FFCP PHASE1:Hg19::chr5:77845080..77845099,-: Difference between revisions
From FANTOM5_SSTAR
Created page with "{{FFCP
|id=chr5:77845080..77845099,-
|short_description=p10@LHFPL2
|description=CAGE_peak_10_at_LHFPL2_5end
|association_with_transcript=-106bp_to_ENST00000515007_5end
|E..." |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10184 | |EntrezGene=10184 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6588 | |HGNC=6588 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-106bp_to_ENST00000515007_5end | |||
|cluster_id=chr5:77845080..77845099,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_10_at_LHFPL2_5end | |||
|id=chr5:77845080..77845099,- | |||
|ontology_enrichment_celltype=CL:0000766!2.53e-65!76;CL:0002194!5.26e-62!63;CL:0000576!5.26e-62!63;CL:0000040!5.26e-62!63;CL:0000559!5.26e-62!63;CL:0002009!1.72e-59!65;CL:0002057!1.06e-58!42;CL:0000839!8.34e-56!70;CL:0000557!9.75e-55!71;CL:0000860!1.11e-53!45;CL:0000763!1.61e-47!112;CL:0000049!1.61e-47!112;CL:0000738!3.67e-32!140;CL:0002087!1.27e-30!119;CL:0000037!1.20e-28!172;CL:0000566!1.20e-28!172;CL:0002032!1.05e-27!165;CL:0000837!1.05e-27!165;CL:0002031!3.43e-26!124;CL:0000988!9.34e-26!182;CL:0002393!4.90e-12!9;CL:0002397!4.90e-12!9;CL:0000094!4.72e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.28e-94;33!CL:0002057;1.28e-94;33!CL:0000473;7.94e-90;39!CL:0000234;7.94e-90;39!CL:0000576;2.54e-72;48!CL:0000766;1.63e-45;69!CL:0000763;2.51e-23;100!CL:0000738;1.67e-15;136!CL:0002087;1.74e-15;104!CL:0000235;3.87e-14;6!CL:0002393;1.24e-08;6!CL:0002397;1.24e-08;6!CL:0000988;2.31e-08;177!CL:0000219;9.33e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.60e-125,48;CL:0000234,3.60e-125,48;CL:0002194,7.08e-124,59;CL:0000576,7.08e-124,59;CL:0000040,7.08e-124,59;CL:0000559,7.08e-124,59;CL:0002009,1.60e-119,61;CL:0000766,3.96e-113,72;CL:0000860,8.70e-112,42;CL:0002057,8.70e-112,42;CL:0000839,8.94e-110,66;CL:0000557,5.36e-108,67;CL:0000763,4.69e-75,108;CL:0000049,4.69e-75,108;CL:0002087,1.08e-58,115;CL:0002031,8.31e-56,120;CL:0000738,6.06e-55,136;CL:0002032,1.01e-46,161;CL:0000837,1.01e-46,161;CL:0000037,2.63e-44,168;CL:0000988,1.76e-41,177;CL:0000134,5.60e-15,354;CL:0002320,1.84e-14,361;CL:0000235,4.10e-14,6;CL:0000219,1.20e-12,386;CL:0002393,5.56e-12,9;CL:0002397,5.56e-12,9;CL:0000048,1.98e-10,427;CL:0000723,4.00e-10,433;CL:0000034,9.93e-10,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.67e-82;42!CL:0000049;5.05e-22;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.97e-53!102;UBERON:0003061!4.97e-53!102;UBERON:0002193!1.06e-50!112;UBERON:0002371!2.45e-46!80;UBERON:0001474!1.01e-41!86;UBERON:0002405!1.99e-34!115;UBERON:0004765!6.81e-34!101;UBERON:0001434!6.81e-34!101;UBERON:0007023!4.70e-23!115;UBERON:0003081!1.86e-19!216;UBERON:0002204!5.31e-16!167;UBERON:0001049!3.31e-10!57;UBERON:0005068!3.31e-10!57;UBERON:0006241!3.31e-10!57;UBERON:0007135!3.31e-10!57;UBERON:0002616!5.95e-08!59;UBERON:0000178!1.20e-07!15;UBERON:0000179!1.20e-07!15;UBERON:0000463!1.20e-07!15;UBERON:0002780!6.17e-07!41;UBERON:0001890!6.17e-07!41;UBERON:0006240!6.17e-07!41;UBERON:0000062!9.02e-07!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.48e-94,76;UBERON:0002390,1.96e-87,98;UBERON:0003061,1.96e-87,98;UBERON:0001474,1.81e-86,82;UBERON:0002193,2.36e-78,108;UBERON:0004765,6.89e-78,90;UBERON:0002405,4.79e-75,93;UBERON:0001434,4.52e-69,100;UBERON:0003081,4.02e-38,203;UBERON:0002204,4.65e-37,167;UBERON:0000926,2.06e-20,315;UBERON:0004120,2.06e-20,315;UBERON:0006603,2.06e-20,315;UBERON:0002384,9.27e-14,371;UBERON:0000923,2.79e-07,560;UBERON:0010316,2.79e-07,560;UBERON:0005291,2.79e-07,560;UBERON:0006598,2.79e-07,560;UBERON:0010317,2.79e-07,560;UBERON:0002532,2.79e-07,560;UBERON:0002050,3.83e-07,564 | |||
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| ||
|short_description=p10@LHFPL2 | |||
}} | }} | ||
Latest revision as of 20:37, 18 September 2015
| Short description: | p10@LHFPL2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_10_at_LHFPL2_5end |
| Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
| Association with transcript: | -106bp_to_ENST00000515007_5end |
| EntrezGene: | LHFPL2 |
| HGNC: | 6588 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 4.48e-94 | 76 |
| hematopoietic system | 1.96e-87 | 98 |
| blood island | 1.96e-87 | 98 |
| bone element | 1.81e-86 | 82 |
| hemolymphoid system | 2.36e-78 | 108 |
| skeletal element | 6.89e-78 | 90 |
| immune system | 4.79e-75 | 93 |
| skeletal system | 4.52e-69 | 100 |
| lateral plate mesoderm | 4.02e-38 | 203 |
| musculoskeletal system | 4.65e-37 | 167 |
| mesoderm | 2.06e-20 | 315 |
| mesoderm-derived structure | 2.06e-20 | 315 |
| presumptive mesoderm | 2.06e-20 | 315 |
| connective tissue | 9.27e-14 | 371 |
| germ layer | 2.79e-07 | 560 |
| germ layer / neural crest | 2.79e-07 | 560 |
| embryonic tissue | 2.79e-07 | 560 |
| presumptive structure | 2.79e-07 | 560 |
| germ layer / neural crest derived structure | 2.79e-07 | 560 |
| epiblast (generic) | 2.79e-07 | 560 |
| embryonic structure | 3.83e-07 | 564 |