FFCP PHASE1:Hg19::chr17:18266797..18266817,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6470 | |EntrezGene=6470 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10850 | |HGNC=10850 | ||
|TSSclassifier=strong | |||
|UniProt=P34896,B4DPM9 | |UniProt=P34896,B4DPM9 | ||
|association_with_transcript=0bp_to_ENST00000316694,ENST00000539052_5end | |association_with_transcript=0bp_to_ENST00000316694,ENST00000539052_5end | ||
|cluster_id=chr17:18266797..18266817,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SHMT1_5end | |description=CAGE_peak_3_at_SHMT1_5end | ||
|id=chr17:18266797..18266817,- | |id=chr17:18266797..18266817,- | ||
|ontology_enrichment_celltype=CL:0000066!4.20e-17!254;CL:0000223!3.13e-07!59 | |ontology_enrichment_celltype=CL:0000066!4.20e-17!254;CL:0000223!3.13e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.61e-16,253;CL:0000223,4.34e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0006595;3.46e-07;86!UBERON:0008947;7.36e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.23e-13!106;DOID:0050687!2.97e-09!143;DOID:162!3.94e-08!235;DOID:14566!1.40e-07!239 | |ontology_enrichment_disease=DOID:305!2.23e-13!106;DOID:0050687!2.97e-09!143;DOID:162!3.94e-08!235;DOID:14566!1.40e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.74e-14,106;DOID:0050687,8.49e-10,143;DOID:162,1.61e-07,235;DOID:14566,5.19e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.08e-14!129;UBERON:0004185!1.08e-14!129;UBERON:0001007!1.36e-14!155;UBERON:0001555!1.36e-14!155;UBERON:0007026!1.36e-14!155;UBERON:0000077!4.03e-13!130;UBERON:0000063!4.66e-13!97;UBERON:0004119!7.12e-13!169;UBERON:0000925!7.12e-13!169;UBERON:0006595!7.12e-13!169;UBERON:0000481!9.96e-13!347;UBERON:0001041!1.13e-12!98;UBERON:0000064!5.88e-12!219;UBERON:0005177!1.09e-11!107;UBERON:0003104!2.95e-11!238;UBERON:0009142!2.95e-11!238;UBERON:0000072!1.02e-10!46;UBERON:0000475!1.43e-09!365;UBERON:0001048!1.53e-09!168;UBERON:0009569!2.88e-09!113;UBERON:0000466!4.71e-09!126;UBERON:0001004!5.81e-09!72;UBERON:0000065!1.28e-08!53;UBERON:0008947!1.55e-08!38;UBERON:0003258!1.55e-08!38;UBERON:0000464!1.18e-07!104;UBERON:0000062!1.34e-07!511;UBERON:0005172!1.85e-07!55;UBERON:0005173!1.85e-07!55;UBERON:0001557!6.27e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;5.30e-08;37!UBERON:0001737;1.53e-07;9!UBERON:0001557;1.53e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.16e-17,145;UBERON:0001555,8.16e-17,145;UBERON:0007026,8.16e-17,145;UBERON:0004921,1.58e-16,118;UBERON:0001041,3.02e-15,87;UBERON:0004119,6.84e-14,160;UBERON:0000925,6.84e-14,160;UBERON:0006595,6.84e-14,160;UBERON:0005177,4.82e-11,101;UBERON:0001048,5.71e-11,160;UBERON:0000072,1.23e-10,47;UBERON:0009569,3.03e-10,112;UBERON:0011216,1.10e-09,223;UBERON:0008947,2.26e-09,38;UBERON:0003258,2.26e-09,38;UBERON:0001004,1.84e-08,74;UBERON:0000065,2.72e-08,54;UBERON:0001737,1.83e-07,9;UBERON:0005172,2.16e-07,54;UBERON:0005173,2.16e-07,54;UBERON:0001557,2.46e-07,19;UBERON:0002100,3.88e-07,199;UBERON:0002417,5.77e-07,60;UBERON:0000916,5.77e-07,60 | |||
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| ||
|short_description=p3@SHMT1 | |short_description=p3@SHMT1 | ||
}} | }} |
Latest revision as of 23:04, 18 September 2015
Short description: | p3@SHMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHMT1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000316694, ENST00000539052_5end |
EntrezGene: | SHMT1 |
HGNC: | 10850 |
UniProt: | P34896B4DPM9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.61e-16 | 253 |
endodermal cell | 4.34e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
digestive system | 8.16e-17 | 145 |
digestive tract | 8.16e-17 | 145 |
primitive gut | 8.16e-17 | 145 |
subdivision of digestive tract | 1.58e-16 | 118 |
foregut | 3.02e-15 | 87 |
endoderm-derived structure | 6.84e-14 | 160 |
endoderm | 6.84e-14 | 160 |
presumptive endoderm | 6.84e-14 | 160 |
trunk region element | 4.82e-11 | 101 |
primordium | 5.71e-11 | 160 |
segment of respiratory tract | 1.23e-10 | 47 |
subdivision of trunk | 3.03e-10 | 112 |
organ system subdivision | 1.10e-09 | 223 |
respiratory primordium | 2.26e-09 | 38 |
endoderm of foregut | 2.26e-09 | 38 |
respiratory system | 1.84e-08 | 74 |
respiratory tract | 2.72e-08 | 54 |
larynx | 1.83e-07 | 9 |
abdomen element | 2.16e-07 | 54 |
abdominal segment element | 2.16e-07 | 54 |
upper respiratory tract | 2.46e-07 | 19 |
trunk | 3.88e-07 | 199 |
abdominal segment of trunk | 5.77e-07 | 60 |
abdomen | 5.77e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.74e-14 | 106 |
cell type cancer | 8.49e-10 | 143 |
cancer | 1.61e-07 | 235 |
disease of cellular proliferation | 5.19e-07 | 239 |