FFCP PHASE1:Hg19::chr3:119813131..119813152,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:119813131..119813152,-
|short_description=p3@GSK3B
|description=CAGE_peak_3_at_GSK3B_5end
|association_with_transcript=111bp_to_ENST00000264235,NM_00114615...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2932 | |EntrezGene=2932 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4617 | |HGNC=4617 | ||
|TSSclassifier=strong | |||
|UniProt=P49841,Q6FI27 | |UniProt=P49841,Q6FI27 | ||
|association_with_transcript=111bp_to_ENST00000264235,NM_001146156,NM_002093,uc003edn.2,uc003edo.2_5end | |||
|cluster_id=chr3:119813131..119813152,- | |||
|coexpression_cluster_id=C1611 | |||
|description=CAGE_peak_3_at_GSK3B_5end | |||
|id=chr3:119813131..119813152,- | |||
|ontology_enrichment_celltype=CL:0002057!1.41e-19!42;CL:0000766!2.88e-18!76;CL:0000860!2.86e-17!45;CL:0002139!6.13e-17!24;CL:0000115!4.17e-16!35;CL:0000763!4.28e-16!112;CL:0000049!4.28e-16!112;CL:0000037!1.36e-15!172;CL:0000566!1.36e-15!172;CL:0000557!3.58e-15!71;CL:0000738!3.71e-15!140;CL:0002032!9.47e-15!165;CL:0000837!9.47e-15!165;CL:0000988!1.69e-13!182;CL:0000839!4.08e-13!70;CL:0000071!4.32e-13!18;CL:0002546!4.32e-13!18;CL:0002009!6.56e-13!65;CL:0002194!1.32e-12!63;CL:0000576!1.32e-12!63;CL:0000040!1.32e-12!63;CL:0000559!1.32e-12!63;CL:0002087!2.50e-11!119;CL:0002031!3.50e-11!124;CL:0002078!1.44e-10!44;CL:0000213!1.75e-08!57;CL:0000215!1.75e-08!57;CL:1000413!2.52e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.23e-19;24!CL:0000860;9.30e-18;33!CL:0002057;9.30e-18;33!CL:0000115;1.02e-16;36!CL:0000071;1.23e-14;18!CL:0000576;3.04e-13;48!CL:0000473;1.54e-12;39!CL:0000234;1.54e-12;39!CL:0000766;8.04e-11;69!CL:0002078;4.19e-09;45!CL:1000413;4.16e-08;9!CL:0000763;7.29e-08;100!CL:0000213;1.71e-07;58!CL:0000215;1.71e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.31e-23,72;CL:0000860,9.97e-22,42;CL:0002057,9.97e-22,42;CL:0000763,6.50e-21,108;CL:0000049,6.50e-21,108;CL:0000115,2.18e-19,36;CL:0000557,3.51e-19,67;CL:0002139,8.97e-19,24;CL:0000473,1.39e-18,48;CL:0000234,1.39e-18,48;CL:0000037,2.61e-18,168;CL:0002032,3.82e-17,161;CL:0000837,3.82e-17,161;CL:0000738,3.98e-17,136;CL:0000839,6.57e-17,66;CL:0002009,1.61e-16,61;CL:0002194,3.41e-16,59;CL:0000576,3.41e-16,59;CL:0000040,3.41e-16,59;CL:0000559,3.41e-16,59;CL:0000988,5.80e-16,177;CL:0000071,1.83e-14,18;CL:0002546,1.83e-14,18;CL:0002078,2.08e-13,45;CL:0002087,2.23e-12,115;CL:0002031,2.29e-12,120;CL:0000213,8.91e-12,58;CL:0000215,8.91e-12,58;CL:1000413,5.15e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.72e-16;42!CL:0002546;1.23e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.59e-17!112;UBERON:0003081!1.02e-16!216;UBERON:0002390!1.02e-14!102;UBERON:0003061!1.02e-14!102;UBERON:0001986!4.32e-13!18;UBERON:0004638!4.32e-13!18;UBERON:0004852!4.32e-13!18;UBERON:0002405!1.34e-12!115;UBERON:0002371!7.19e-12!80;UBERON:0001474!9.72e-11!86;UBERON:0000055!1.13e-09!69;UBERON:0000487!1.43e-09!22;UBERON:0001009!1.27e-08!113;UBERON:0004535!2.11e-08!110;UBERON:0007023!3.08e-08!115;UBERON:0004765!1.43e-07!101;UBERON:0001434!1.43e-07!101;UBERON:0001981!1.61e-07!60;UBERON:0007500!1.61e-07!60;UBERON:0004537!1.61e-07!60;UBERON:0006965!1.61e-07!60;UBERON:0004872!1.66e-07!84;UBERON:0003915!2.52e-07!9;UBERON:0004700!2.52e-07!9;UBERON:0001917!2.52e-07!9;UBERON:0006914!3.38e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.23e-14;18!UBERON:0001986;1.23e-14;18!UBERON:0004852;1.23e-14;18!UBERON:0000487;9.99e-11;22!UBERON:0006914;3.48e-08;25!UBERON:0003915;4.16e-08;9!UBERON:0004700;4.16e-08;9!UBERON:0001917;4.16e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,8.04e-23,203;UBERON:0002193,5.50e-21,108;UBERON:0002405,9.44e-19,93;UBERON:0002390,1.73e-17,98;UBERON:0003061,1.73e-17,98;UBERON:0002371,4.28e-15,76;UBERON:0004638,1.83e-14,18;UBERON:0001986,1.83e-14,18;UBERON:0004852,1.83e-14,18;UBERON:0001474,1.88e-13,82;UBERON:0004765,6.52e-12,90;UBERON:0000055,9.48e-12,68;UBERON:0000487,1.64e-10,22;UBERON:0001009,3.86e-10,112;UBERON:0004535,6.82e-10,109;UBERON:0007500,5.01e-09,59;UBERON:0001981,5.01e-09,59;UBERON:0004537,5.01e-09,59;UBERON:0006965,5.01e-09,59;UBERON:0004872,1.19e-08,83;UBERON:0000926,1.21e-08,315;UBERON:0004120,1.21e-08,315;UBERON:0006603,1.21e-08,315;UBERON:0001434,1.34e-08,100;UBERON:0007023,1.64e-08,114;UBERON:0006914,5.07e-08,25;UBERON:0003915,5.15e-08,9;UBERON:0004700,5.15e-08,9;UBERON:0001917,5.15e-08,9;UBERON:0002049,9.87e-08,78;UBERON:0007798,9.87e-08,78 | |||
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| ||
|short_description=p3@GSK3B | |||
}} | }} |
Latest revision as of 21:22, 19 September 2015
Short description: | p3@GSK3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GSK3B_5end |
Coexpression cluster: | C1611_Renal_Hepatic_Eosinophils_Endothelial_CD14_heart_Neutrophils |
Association with transcript: | 111bp_to_ENST00000264235, NM_001146156, NM_002093, uc003edn.2, uc003edo.2_5end |
EntrezGene: | GSK3B |
HGNC: | 4617 |
UniProt: | P49841Q6FI27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 8.04e-23 | 203 |
hemolymphoid system | 5.50e-21 | 108 |
immune system | 9.44e-19 | 93 |
hematopoietic system | 1.73e-17 | 98 |
blood island | 1.73e-17 | 98 |
bone marrow | 4.28e-15 | 76 |
blood vessel endothelium | 1.83e-14 | 18 |
endothelium | 1.83e-14 | 18 |
cardiovascular system endothelium | 1.83e-14 | 18 |
bone element | 1.88e-13 | 82 |
skeletal element | 6.52e-12 | 90 |
vessel | 9.48e-12 | 68 |
simple squamous epithelium | 1.64e-10 | 22 |
circulatory system | 3.86e-10 | 112 |
cardiovascular system | 6.82e-10 | 109 |
epithelial tube open at both ends | 5.01e-09 | 59 |
blood vessel | 5.01e-09 | 59 |
blood vasculature | 5.01e-09 | 59 |
vascular cord | 5.01e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 1.19e-08 | 83 |
mesoderm | 1.21e-08 | 315 |
mesoderm-derived structure | 1.21e-08 | 315 |
presumptive mesoderm | 1.21e-08 | 315 |
skeletal system | 1.34e-08 | 100 |
adult organism | 1.64e-08 | 114 |
squamous epithelium | 5.07e-08 | 25 |
endothelial tube | 5.15e-08 | 9 |
arterial system endothelium | 5.15e-08 | 9 |
endothelium of artery | 5.15e-08 | 9 |
vasculature | 9.87e-08 | 78 |
vascular system | 9.87e-08 | 78 |