FFCP PHASE1:Hg19::chr12:66218378..66218401,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | |UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | ||
|association_with_transcript=138bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | |association_with_transcript=138bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | ||
|cluster_id=chr12:66218378..66218401,+ | |||
|coexpression_cluster_id=C749 | |coexpression_cluster_id=C749 | ||
|description=CAGE_peak_6_at_HMGA2_5end | |description=CAGE_peak_6_at_HMGA2_5end | ||
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|ontology_enrichment_celltype=CL:0002321!2.20e-25!248;CL:0000220!1.82e-24!246;CL:0000055!1.02e-22!180;CL:0000012!2.53e-20!682;CL:0000548!8.58e-20!679;CL:0000004!8.58e-20!679;CL:0000255!8.58e-20!679;CL:0000066!3.17e-18!254;CL:0002371!6.99e-15!591;CL:0000144!1.73e-14!625;CL:0000393!9.73e-12!60;CL:0000211!9.73e-12!60;CL:0000680!1.97e-11!57;CL:0000056!1.97e-11!57;CL:0000355!1.97e-11!57;CL:0000183!4.39e-11!59;CL:0000003!1.03e-10!722;CL:0000222!2.10e-10!119;CL:0000187!2.17e-10!54;CL:0000223!5.73e-09!59;CL:0000057!2.03e-08!75;CL:0002076!2.59e-08!43;CL:0000192!1.62e-07!42;CL:0000514!1.62e-07!42 | |ontology_enrichment_celltype=CL:0002321!2.20e-25!248;CL:0000220!1.82e-24!246;CL:0000055!1.02e-22!180;CL:0000012!2.53e-20!682;CL:0000548!8.58e-20!679;CL:0000004!8.58e-20!679;CL:0000255!8.58e-20!679;CL:0000066!3.17e-18!254;CL:0002371!6.99e-15!591;CL:0000144!1.73e-14!625;CL:0000393!9.73e-12!60;CL:0000211!9.73e-12!60;CL:0000680!1.97e-11!57;CL:0000056!1.97e-11!57;CL:0000355!1.97e-11!57;CL:0000183!4.39e-11!59;CL:0000003!1.03e-10!722;CL:0000222!2.10e-10!119;CL:0000187!2.17e-10!54;CL:0000223!5.73e-09!59;CL:0000057!2.03e-08!75;CL:0002076!2.59e-08!43;CL:0000192!1.62e-07!42;CL:0000514!1.62e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.70e-07;15!CL:1000497;2.11e-07;17!CL:0002518;2.11e-07;17!CL:0000187;3.31e-07;55 | |ontology_enrichment_celltype_v019=CL:1000449;1.70e-07;15!CL:1000497;2.11e-07;17!CL:0002518;2.11e-07;17!CL:0000187;3.31e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.82e-22,250;CL:0000066,2.63e-15,253;CL:0000680,9.24e-12,58;CL:0000056,9.24e-12,58;CL:0000355,9.24e-12,58;CL:0000393,1.76e-11,61;CL:0000211,1.76e-11,61;CL:0000187,1.24e-10,55;CL:0000222,9.80e-10,121;CL:0000192,8.36e-08,43;CL:0000514,8.36e-08,43;CL:0000223,1.32e-07,58;CL:1000449,2.33e-07,15;CL:1000497,2.42e-07,17;CL:0002518,2.42e-07,17;CL:0000057,2.62e-07,76;CL:0000359,7.26e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;3.60e-07;58 | |ontology_enrichment_development_v019=CL:0000355;3.60e-07;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.38e-15!143;UBERON:0000486!2.46e-14!82;UBERON:0002100!2.36e-13!216;UBERON:0000914!3.16e-13!83;UBERON:0002329!3.16e-13!83;UBERON:0003077!3.16e-13!83;UBERON:0003059!3.16e-13!83;UBERON:0007282!3.16e-13!83;UBERON:0009618!3.16e-13!83;UBERON:0007285!3.16e-13!83;UBERON:0003914!1.59e-12!118;UBERON:0003104!3.75e-12!238;UBERON:0009142!3.75e-12!238;UBERON:0000490!1.07e-11!138;UBERON:0000119!3.49e-11!312;UBERON:0004290!3.95e-11!70;UBERON:0000481!1.36e-10!347;UBERON:0000483!1.87e-10!309;UBERON:0000475!2.78e-10!365;UBERON:0002049!2.14e-09!79;UBERON:0007798!2.14e-09!79;UBERON:0001134!2.41e-09!61;UBERON:0002036!2.41e-09!61;UBERON:0003082!2.41e-09!61;UBERON:0002385!1.07e-08!63;UBERON:0001015!1.07e-08!63;UBERON:0000383!1.07e-08!63;UBERON:0000468!1.09e-08!659;UBERON:0001444!1.97e-07!48;UBERON:0000922!3.11e-07!612;UBERON:0001981!3.67e-07!60;UBERON:0007500!3.67e-07!60;UBERON:0004537!3.67e-07!60;UBERON:0006965!3.67e-07!60;UBERON:0003102!5.27e-07!95;UBERON:0000019!6.96e-07!19;UBERON:0000047!6.96e-07!19;UBERON:0004088!6.96e-07!19;UBERON:0003072!6.96e-07!19;UBERON:0003071!6.96e-07!19;UBERON:0004128!6.96e-07!19;UBERON:0001637!7.14e-07!42;UBERON:0003509!7.14e-07!42;UBERON:0004572!7.14e-07!42;UBERON:0000467!7.46e-07!625;UBERON:0000055!7.53e-07!69;UBERON:0000466!9.75e-07!126 | |ontology_enrichment_uberon=UBERON:0005256!1.38e-15!143;UBERON:0000486!2.46e-14!82;UBERON:0002100!2.36e-13!216;UBERON:0000914!3.16e-13!83;UBERON:0002329!3.16e-13!83;UBERON:0003077!3.16e-13!83;UBERON:0003059!3.16e-13!83;UBERON:0007282!3.16e-13!83;UBERON:0009618!3.16e-13!83;UBERON:0007285!3.16e-13!83;UBERON:0003914!1.59e-12!118;UBERON:0003104!3.75e-12!238;UBERON:0009142!3.75e-12!238;UBERON:0000490!1.07e-11!138;UBERON:0000119!3.49e-11!312;UBERON:0004290!3.95e-11!70;UBERON:0000481!1.36e-10!347;UBERON:0000483!1.87e-10!309;UBERON:0000475!2.78e-10!365;UBERON:0002049!2.14e-09!79;UBERON:0007798!2.14e-09!79;UBERON:0001134!2.41e-09!61;UBERON:0002036!2.41e-09!61;UBERON:0003082!2.41e-09!61;UBERON:0002385!1.07e-08!63;UBERON:0001015!1.07e-08!63;UBERON:0000383!1.07e-08!63;UBERON:0000468!1.09e-08!659;UBERON:0001444!1.97e-07!48;UBERON:0000922!3.11e-07!612;UBERON:0001981!3.67e-07!60;UBERON:0007500!3.67e-07!60;UBERON:0004537!3.67e-07!60;UBERON:0006965!3.67e-07!60;UBERON:0003102!5.27e-07!95;UBERON:0000019!6.96e-07!19;UBERON:0000047!6.96e-07!19;UBERON:0004088!6.96e-07!19;UBERON:0003072!6.96e-07!19;UBERON:0003071!6.96e-07!19;UBERON:0004128!6.96e-07!19;UBERON:0001637!7.14e-07!42;UBERON:0003509!7.14e-07!42;UBERON:0004572!7.14e-07!42;UBERON:0000467!7.46e-07!625;UBERON:0000055!7.53e-07!69;UBERON:0000466!9.75e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.70e-07;15!UBERON:0004819;1.70e-07;15!UBERON:0001285;1.70e-07;15!UBERON:0007684;1.70e-07;15!UBERON:0000019;5.03e-07;19!UBERON:0000047;5.03e-07;19!UBERON:0004088;5.03e-07;19!UBERON:0010230;5.03e-07;19!UBERON:0003914;5.72e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0006555;1.70e-07;15!UBERON:0004819;1.70e-07;15!UBERON:0001285;1.70e-07;15!UBERON:0007684;1.70e-07;15!UBERON:0000019;5.03e-07;19!UBERON:0000047;5.03e-07;19!UBERON:0004088;5.03e-07;19!UBERON:0010230;5.03e-07;19!UBERON:0003914;5.72e-07;74 | ||
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| ||
|short_description=p6@HMGA2 | |short_description=p6@HMGA2 | ||
}} | }} |
Latest revision as of 23:20, 19 September 2015
Short description: | p6@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | 138bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.82e-22 | 250 |
epithelial cell | 2.63e-15 | 253 |
muscle precursor cell | 9.24e-12 | 58 |
myoblast | 9.24e-12 | 58 |
multi-potent skeletal muscle stem cell | 9.24e-12 | 58 |
electrically responsive cell | 1.76e-11 | 61 |
electrically active cell | 1.76e-11 | 61 |
muscle cell | 1.24e-10 | 55 |
mesodermal cell | 9.80e-10 | 121 |
smooth muscle cell | 8.36e-08 | 43 |
smooth muscle myoblast | 8.36e-08 | 43 |
endodermal cell | 1.32e-07 | 58 |
epithelial cell of nephron | 2.33e-07 | 15 |
kidney cell | 2.42e-07 | 17 |
kidney epithelial cell | 2.42e-07 | 17 |
fibroblast | 2.62e-07 | 76 |
vascular associated smooth muscle cell | 7.26e-07 | 32 |