FFCP PHASE1:Hg19::chr19:5914187..5914198,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=828 | |EntrezGene=828 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1487 | |HGNC=1487 | ||
|TSSclassifier=strong | |||
|UniProt=Q13938,Q96ET4 | |UniProt=Q13938,Q96ET4 | ||
|association_with_transcript=0bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end | |association_with_transcript=0bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end | ||
|cluster_id=chr19:5914187..5914198,+ | |||
|description=CAGE_peak_2_at_CAPS_5end | |description=CAGE_peak_2_at_CAPS_5end | ||
|id=chr19:5914187..5914198,+ | |id=chr19:5914187..5914198,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.29e-21;19!CL:0000244;6.34e-21;4!CL:0000731;6.34e-21;4!CL:0002577;4.08e-17;3!CL:0002536;2.85e-12;2!CL:0002602;1.66e-11;2!CL:0002537;4.61e-10;5!CL:0000138;1.59e-08;6!CL:0000346;5.93e-08;3!CL:1000428;5.93e-08;3!CL:0000313;4.71e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.51e-22,19;CL:0000244,7.25e-21,4;CL:0000731,7.25e-21,4;CL:0002577,5.22e-17,3;CL:0002536,2.85e-12,2;CL:0002602,1.38e-11,2;CL:0002537,3.17e-10,5;CL:0000058,1.70e-08,6;CL:0000138,1.70e-08,6;CL:0000346,5.64e-08,3;CL:1000428,5.64e-08,3;CL:0000313,4.58e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;4.71e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,4.58e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.48e-13!115;UBERON:0005631!8.74e-13!14;UBERON:0000158!8.74e-13!14;UBERON:0003124!3.55e-09!7;UBERON:0000064!1.87e-08!219;UBERON:0000478!3.21e-08!24;UBERON:0002298!2.54e-07!8;UBERON:0004121!5.17e-07!169;UBERON:0000058!9.96e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.53e-19;7!UBERON:0005631;5.77e-19;10!UBERON:0000158;5.77e-19;10!UBERON:0000478;8.66e-17;24!UBERON:0000365;8.76e-17;5!UBERON:0001896;9.17e-17;3!UBERON:0005290;9.17e-17;3!UBERON:0005910;5.11e-14;6!UBERON:0001987;5.75e-13;4!UBERON:0006444;1.66e-11;2!UBERON:0001995;1.66e-11;2!UBERON:0004715;1.66e-11;2!UBERON:0002298;1.26e-08;6!UBERON:0002418;5.93e-08;3!UBERON:0004755;5.93e-08;3!UBERON:0000412;5.93e-08;3!UBERON:0001992;5.93e-08;3!UBERON:0000486;4.57e-07;12!UBERON:0004911;4.71e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.57e-30,14;UBERON:0000158,4.57e-30,14;UBERON:0000305,2.24e-19,7;UBERON:0004871,6.28e-17,8;UBERON:0000478,6.83e-17,24;UBERON:0001896,9.44e-17,3;UBERON:0005290,9.44e-17,3;UBERON:0010096,9.44e-17,3;UBERON:0000365,9.74e-17,5;UBERON:0005910,5.58e-14,6;UBERON:0001987,6.90e-13,4;UBERON:0004340,6.90e-13,4;UBERON:0003124,9.94e-13,7;UBERON:0006444,1.38e-11,2;UBERON:0001995,1.38e-11,2;UBERON:0004715,1.38e-11,2;UBERON:0006554,2.33e-11,47;UBERON:0001008,4.44e-11,48;UBERON:0004923,2.17e-09,66;UBERON:0002298,1.28e-08,6;UBERON:0002418,5.25e-08,3;UBERON:0004755,5.25e-08,3;UBERON:0000412,5.64e-08,3;UBERON:0001992,5.64e-08,3;UBERON:0004175,2.59e-07,25;UBERON:0004911,4.58e-07,1 | |||
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| ||
|short_description=p2@CAPS | |short_description=p2@CAPS | ||
}} | }} |
Latest revision as of 14:34, 24 September 2015
Short description: | p2@CAPS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAPS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000222125, ENST00000452990, NM_004058, NM_080590, uc002mdt.2, uc002mdu.2_5end |
EntrezGene: | CAPS |
HGNC: | 1487 |
UniProt: | Q13938Q96ET4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.51e-22 | 19 |
transitional epithelial cell | 7.25e-21 | 4 |
urothelial cell | 7.25e-21 | 4 |
placental epithelial cell | 5.22e-17 | 3 |
amniotic epithelial cell | 2.85e-12 | 2 |
annulus pulposus cell | 1.38e-11 | 2 |
amnion mesenchymal stem cell | 3.17e-10 | 5 |
chondroblast | 1.70e-08 | 6 |
chondrocyte | 1.70e-08 | 6 |
hair follicle dermal papilla cell | 5.64e-08 | 3 |
stem cell of epidermis | 5.64e-08 | 3 |
serous secreting cell | 4.58e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.57e-30 | 14 |
membranous layer | 4.57e-30 | 14 |
amnion | 2.24e-19 | 7 |
somatic layer of lateral plate mesoderm | 6.28e-17 | 8 |
extraembryonic structure | 6.83e-17 | 24 |
medulla oblongata | 9.44e-17 | 3 |
myelencephalon | 9.44e-17 | 3 |
future myelencephalon | 9.44e-17 | 3 |
urothelium | 9.74e-17 | 5 |
transitional epithelium | 5.58e-14 | 6 |
placenta | 6.90e-13 | 4 |
allantois | 6.90e-13 | 4 |
chorion | 9.94e-13 | 7 |
annulus fibrosus | 1.38e-11 | 2 |
fibrocartilage | 1.38e-11 | 2 |
annulus fibrosus disci intervertebralis | 1.38e-11 | 2 |
urinary system structure | 2.33e-11 | 47 |
renal system | 4.44e-11 | 48 |
organ component layer | 2.17e-09 | 66 |
brainstem | 1.28e-08 | 6 |
cartilage tissue | 5.25e-08 | 3 |
skeletal tissue | 5.25e-08 | 3 |
dermal papilla | 5.64e-08 | 3 |
papillary layer of dermis | 5.64e-08 | 3 |
internal genitalia | 2.59e-07 | 25 |
epithelium of female gonad | 4.58e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 4.58e-07 | 1 |