FFCP PHASE1:Hg19::chr18:76740152..76740186,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27164 | |EntrezGene=27164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10527 | |HGNC=10527 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXY4,Q9BXA9 | |UniProt=F5GXY4,Q9BXA9 | ||
|association_with_transcript=-88bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | |association_with_transcript=-88bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | ||
|cluster_id=chr18:76740152..76740186,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_2_at_SALL3_5end | |description=CAGE_peak_2_at_SALL3_5end | ||
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|ontology_enrichment_celltype=CL:0000047!3.62e-15!8;CL:0002322!9.75e-14!5;CL:0000540!1.19e-10!6;CL:0000031!1.19e-10!6;CL:0000404!1.19e-10!6;CL:0002319!1.72e-10!25;CL:0000128!3.35e-08!7;CL:0000126!3.35e-08!7;CL:0000127!3.35e-08!7;CL:0002453!3.35e-08!7;CL:0002605!6.40e-08!3;CL:0000133!2.23e-07!59 | |ontology_enrichment_celltype=CL:0000047!3.62e-15!8;CL:0002322!9.75e-14!5;CL:0000540!1.19e-10!6;CL:0000031!1.19e-10!6;CL:0000404!1.19e-10!6;CL:0002319!1.72e-10!25;CL:0000128!3.35e-08!7;CL:0000126!3.35e-08!7;CL:0000127!3.35e-08!7;CL:0002453!3.35e-08!7;CL:0002605!6.40e-08!3;CL:0000133!2.23e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.24e-46;5!CL:0000047;4.13e-19;2!CL:0002319;1.04e-15;25!CL:0002321;1.59e-15;15!CL:0000540;2.04e-14;6!CL:0000404;2.04e-14;6!CL:0002605;9.42e-13;3!CL:0000039;1.80e-12;7!CL:0000586;1.80e-12;7!CL:0000148;5.60e-09;10 | |ontology_enrichment_celltype_v019=CL:0002322;1.24e-46;5!CL:0000047;4.13e-19;2!CL:0002319;1.04e-15;25!CL:0002321;1.59e-15;15!CL:0000540;2.04e-14;6!CL:0000404;2.04e-14;6!CL:0002605;9.42e-13;3!CL:0000039;1.80e-12;7!CL:0000586;1.80e-12;7!CL:0000148;5.60e-09;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.08e-46,5;CL:0000047,1.99e-28,8;CL:0002319,1.21e-15,25;CL:0000540,2.19e-14,6;CL:0000031,2.19e-14,6;CL:0000404,2.19e-14,6;CL:0000133,2.04e-13,59;CL:0002605,1.35e-12,3;CL:0000039,1.91e-12,7;CL:0000586,1.91e-12,7;CL:0000221,8.52e-11,72;CL:0000148,5.53e-09,10;CL:0000541,5.53e-09,10 | |||
|ontology_enrichment_development_v019=CL:0000031;2.04e-14;6!UBERON:0005425;3.45e-10;1!CL:0000133;2.59e-09;59!UBERON:0009117;6.95e-09;10!UBERON:0005564;6.95e-09;10 | |ontology_enrichment_development_v019=CL:0000031;2.04e-14;6!UBERON:0005425;3.45e-10;1!CL:0000133;2.59e-09;59!UBERON:0009117;6.95e-09;10!UBERON:0005564;6.95e-09;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000473;5.58e-11;8!UBERON:0000922;1.08e-10;49!UBERON:0000941;3.45e-10;1!UBERON:0001785;3.45e-10;1!UBERON:0002464;3.45e-10;1!UBERON:0004904;3.45e-10;1!UBERON:0001021;3.45e-10;1!UBERON:0003135;4.04e-08;11 | |ontology_enrichment_uberon_v019=UBERON:0000473;5.58e-11;8!UBERON:0000922;1.08e-10;49!UBERON:0000941;3.45e-10;1!UBERON:0001785;3.45e-10;1!UBERON:0002464;3.45e-10;1!UBERON:0004904;3.45e-10;1!UBERON:0001021;3.45e-10;1!UBERON:0003135;4.04e-08;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.87e-11,8;UBERON:0000941,3.29e-10,1;UBERON:0001785,3.29e-10,1;UBERON:0002464,3.29e-10,1;UBERON:0004904,3.29e-10,1;UBERON:0001021,3.29e-10,1;UBERON:0003902,3.29e-10,1;UBERON:0005425,3.29e-10,1;UBERON:0003135,4.19e-08,11 | |||
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| ||
|short_description=p2@SALL3 | |short_description=p2@SALL3 | ||
}} | }} |
Latest revision as of 19:13, 24 September 2015
Short description: | p2@SALL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SALL3_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -88bp_to_ENST00000536229, ENST00000537592, ENST00000543056, NM_171999, uc002lmt.2_5end |
EntrezGene: | SALL3 |
HGNC: | 10527 |
UniProt: | F5GXY4Q9BXA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.08e-46 | 5 |
neuronal stem cell | 1.99e-28 | 8 |
neural cell | 1.21e-15 | 25 |
neuron | 2.19e-14 | 6 |
neuroblast | 2.19e-14 | 6 |
electrically signaling cell | 2.19e-14 | 6 |
neurectodermal cell | 2.04e-13 | 59 |
astrocyte of the cerebral cortex | 1.35e-12 | 3 |
germ line cell | 1.91e-12 | 7 |
germ cell | 1.91e-12 | 7 |
ectodermal cell | 8.52e-11 | 72 |
melanocyte | 5.53e-09 | 10 |
melanoblast | 5.53e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 5.87e-11 | 8 |
cranial nerve II | 3.29e-10 | 1 |
cranial nerve | 3.29e-10 | 1 |
nerve trunk | 3.29e-10 | 1 |
nerve connecting eye with brain | 3.29e-10 | 1 |
nerve | 3.29e-10 | 1 |
retinal neural layer | 3.29e-10 | 1 |
presumptive neural retina | 3.29e-10 | 1 |
male reproductive organ | 4.19e-08 | 11 |