FFCP PHASE1:Hg19::chr7:102553430..102553456,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10234 | |EntrezGene=10234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16895 | |HGNC=16895 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N6Y2 | |UniProt=Q8N6Y2 | ||
|association_with_transcript=0bp_to_ENST00000249377,ENST00000339431,ENST00000498487_5end | |association_with_transcript=0bp_to_ENST00000249377,ENST00000339431,ENST00000498487_5end | ||
|cluster_id=chr7:102553430..102553456,+ | |||
|coexpression_cluster_id=C4637 | |||
|description=CAGE_peak_1_at_LRRC17_5end | |description=CAGE_peak_1_at_LRRC17_5end | ||
|id=chr7:102553430..102553456,+ | |id=chr7:102553430..102553456,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.72e-37!180;CL:0000680!1.72e-30!57;CL:0000056!1.72e-30!57;CL:0000355!1.72e-30!57;CL:0000183!5.05e-29!59;CL:0000187!9.80e-29!54;CL:0000393!9.18e-27!60;CL:0000211!9.18e-27!60;CL:0000192!2.04e-23!42;CL:0000514!2.04e-23!42;CL:0000359!5.45e-19!32;CL:0000222!3.03e-15!119;CL:0002494!1.18e-10!16;CL:0000057!2.37e-09!75;CL:0000220!2.55e-08!246;CL:0002321!6.10e-08!248;CL:0002539!6.31e-08!10 | |ontology_enrichment_celltype=CL:0000055!4.72e-37!180;CL:0000680!1.72e-30!57;CL:0000056!1.72e-30!57;CL:0000355!1.72e-30!57;CL:0000183!5.05e-29!59;CL:0000187!9.80e-29!54;CL:0000393!9.18e-27!60;CL:0000211!9.18e-27!60;CL:0000192!2.04e-23!42;CL:0000514!2.04e-23!42;CL:0000359!5.45e-19!32;CL:0000222!3.03e-15!119;CL:0002494!1.18e-10!16;CL:0000057!2.37e-09!75;CL:0000220!2.55e-08!246;CL:0002321!6.10e-08!248;CL:0002539!6.31e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.63e-20;32!CL:0000192;1.02e-19;43!CL:0000187;2.70e-18;55!CL:0000393;2.06e-15;61!CL:0000211;2.06e-15;61!CL:0002494;5.06e-12;16!CL:0000134;2.70e-09;55!CL:0002539;7.03e-09;10!CL:0000723;7.78e-09;61!CL:0000048;8.86e-09;58!CL:0000034;8.05e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.62e-35,58;CL:0000056,1.62e-35,58;CL:0000355,1.62e-35,58;CL:0000187,1.72e-33,55;CL:0000393,2.24e-30,61;CL:0000211,2.24e-30,61;CL:0000192,2.37e-27,43;CL:0000514,2.37e-27,43;CL:0000359,1.32e-21,32;CL:0000222,3.79e-17,121;CL:0002494,5.11e-12,16;CL:0000048,1.24e-10,427;CL:0000723,8.96e-10,433;CL:0000057,4.24e-09,76;CL:0002539,6.97e-09,10;CL:0000034,1.07e-08,441;CL:0002321,7.05e-08,250 | |||
|ontology_enrichment_development_v019=CL:0000514;1.02e-19;43!CL:0000355;2.50e-18;58 | |||
|ontology_enrichment_disease=DOID:2394!6.42e-08!14 | |ontology_enrichment_disease=DOID:2394!6.42e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;4.61e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.68e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0001134!5.49e-30!61;UBERON:0002036!5.49e-30!61;UBERON:0003082!5.49e-30!61;UBERON:0002385!8.88e-30!63;UBERON:0001015!8.88e-30!63;UBERON:0000383!8.88e-30!63;UBERON:0000914!1.46e-29!83;UBERON:0002329!1.46e-29!83;UBERON:0003077!1.46e-29!83;UBERON:0003059!1.46e-29!83;UBERON:0007282!1.46e-29!83;UBERON:0009618!1.46e-29!83;UBERON:0007285!1.46e-29!83;UBERON:0004290!5.42e-29!70;UBERON:0004872!9.95e-26!84;UBERON:0000486!2.40e-23!82;UBERON:0005256!1.98e-21!143;UBERON:0002049!2.03e-21!79;UBERON:0007798!2.03e-21!79;UBERON:0004535!1.45e-19!110;UBERON:0001637!2.78e-19!42;UBERON:0003509!2.78e-19!42;UBERON:0004572!2.78e-19!42;UBERON:0001009!6.43e-19!113;UBERON:0003914!4.16e-18!118;UBERON:0001981!1.15e-17!60;UBERON:0007500!1.15e-17!60;UBERON:0004537!1.15e-17!60;UBERON:0006965!1.15e-17!60;UBERON:0000490!1.53e-17!138;UBERON:0004573!3.74e-17!33;UBERON:0004571!3.74e-17!33;UBERON:0000119!4.85e-16!312;UBERON:0000055!1.22e-15!69;UBERON:0000483!5.73e-15!309;UBERON:0000468!1.50e-14!659;UBERON:0000481!1.90e-14!347;UBERON:0000475!1.02e-13!365;UBERON:0000922!2.38e-12!612;UBERON:0002100!2.41e-12!216;UBERON:0002050!3.69e-12!605;UBERON:0005423!3.69e-12!605;UBERON:0000923!7.31e-12!604;UBERON:0005291!7.31e-12!604;UBERON:0006598!7.31e-12!604;UBERON:0002532!7.31e-12!604;UBERON:0000467!9.88e-12!625;UBERON:0000477!1.36e-11!286;UBERON:0000480!1.53e-11!626;UBERON:0000948!2.54e-11!24;UBERON:0005498!2.54e-11!24;UBERON:0004140!2.54e-11!24;UBERON:0009881!2.54e-11!24;UBERON:0004141!2.54e-11!24;UBERON:0003084!2.54e-11!24;UBERON:0007005!2.54e-11!24;UBERON:0004139!2.54e-11!24;UBERON:0004291!2.54e-11!24;UBERON:0000479!7.74e-11!787;UBERON:0007100!5.94e-10!27;UBERON:0000947!6.61e-10!21;UBERON:0010191!6.61e-10!21;UBERON:0004111!1.01e-09!241;UBERON:0000025!2.32e-09!194;UBERON:0001135!3.62e-09!15;UBERON:0003104!8.89e-09!238;UBERON:0009142!8.89e-09!238;UBERON:0000926!5.23e-08!448;UBERON:0004120!5.23e-08!448;UBERON:0006603!5.23e-08!448;UBERON:0004237!6.31e-08!10;UBERON:0004695!6.31e-08!10;UBERON:0002111!6.31e-08!10;UBERON:0004178!6.31e-08!10;UBERON:0002200!7.12e-07!11;UBERON:0006876!7.12e-07!11;UBERON:0003103!8.89e-07!69 | |ontology_enrichment_uberon=UBERON:0001134!5.49e-30!61;UBERON:0002036!5.49e-30!61;UBERON:0003082!5.49e-30!61;UBERON:0002385!8.88e-30!63;UBERON:0001015!8.88e-30!63;UBERON:0000383!8.88e-30!63;UBERON:0000914!1.46e-29!83;UBERON:0002329!1.46e-29!83;UBERON:0003077!1.46e-29!83;UBERON:0003059!1.46e-29!83;UBERON:0007282!1.46e-29!83;UBERON:0009618!1.46e-29!83;UBERON:0007285!1.46e-29!83;UBERON:0004290!5.42e-29!70;UBERON:0004872!9.95e-26!84;UBERON:0000486!2.40e-23!82;UBERON:0005256!1.98e-21!143;UBERON:0002049!2.03e-21!79;UBERON:0007798!2.03e-21!79;UBERON:0004535!1.45e-19!110;UBERON:0001637!2.78e-19!42;UBERON:0003509!2.78e-19!42;UBERON:0004572!2.78e-19!42;UBERON:0001009!6.43e-19!113;UBERON:0003914!4.16e-18!118;UBERON:0001981!1.15e-17!60;UBERON:0007500!1.15e-17!60;UBERON:0004537!1.15e-17!60;UBERON:0006965!1.15e-17!60;UBERON:0000490!1.53e-17!138;UBERON:0004573!3.74e-17!33;UBERON:0004571!3.74e-17!33;UBERON:0000119!4.85e-16!312;UBERON:0000055!1.22e-15!69;UBERON:0000483!5.73e-15!309;UBERON:0000468!1.50e-14!659;UBERON:0000481!1.90e-14!347;UBERON:0000475!1.02e-13!365;UBERON:0000922!2.38e-12!612;UBERON:0002100!2.41e-12!216;UBERON:0002050!3.69e-12!605;UBERON:0005423!3.69e-12!605;UBERON:0000923!7.31e-12!604;UBERON:0005291!7.31e-12!604;UBERON:0006598!7.31e-12!604;UBERON:0002532!7.31e-12!604;UBERON:0000467!9.88e-12!625;UBERON:0000477!1.36e-11!286;UBERON:0000480!1.53e-11!626;UBERON:0000948!2.54e-11!24;UBERON:0005498!2.54e-11!24;UBERON:0004140!2.54e-11!24;UBERON:0009881!2.54e-11!24;UBERON:0004141!2.54e-11!24;UBERON:0003084!2.54e-11!24;UBERON:0007005!2.54e-11!24;UBERON:0004139!2.54e-11!24;UBERON:0004291!2.54e-11!24;UBERON:0000479!7.74e-11!787;UBERON:0007100!5.94e-10!27;UBERON:0000947!6.61e-10!21;UBERON:0010191!6.61e-10!21;UBERON:0004111!1.01e-09!241;UBERON:0000025!2.32e-09!194;UBERON:0001135!3.62e-09!15;UBERON:0003104!8.89e-09!238;UBERON:0009142!8.89e-09!238;UBERON:0000926!5.23e-08!448;UBERON:0004120!5.23e-08!448;UBERON:0006603!5.23e-08!448;UBERON:0004237!6.31e-08!10;UBERON:0004695!6.31e-08!10;UBERON:0002111!6.31e-08!10;UBERON:0004178!6.31e-08!10;UBERON:0002200!7.12e-07!11;UBERON:0006876!7.12e-07!11;UBERON:0003103!8.89e-07!69 | ||
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| ||
|short_description=p1@LRRC17 | |short_description=p1@LRRC17 | ||
}} | }} |
Latest revision as of 19:15, 24 September 2015
Short description: | p1@LRRC17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC17_5end |
Coexpression cluster: | C4637_Smooth_leiomyoma_mesenchymal_Iris_glioblastoma_Lens_Ciliary |
Association with transcript: | 0bp_to_ENST00000249377, ENST00000339431, ENST00000498487_5end |
EntrezGene: | LRRC17 |
HGNC: | 16895 |
UniProt: | Q8N6Y2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.62e-35 | 58 |
myoblast | 1.62e-35 | 58 |
multi-potent skeletal muscle stem cell | 1.62e-35 | 58 |
muscle cell | 1.72e-33 | 55 |
electrically responsive cell | 2.24e-30 | 61 |
electrically active cell | 2.24e-30 | 61 |
smooth muscle cell | 2.37e-27 | 43 |
smooth muscle myoblast | 2.37e-27 | 43 |
vascular associated smooth muscle cell | 1.32e-21 | 32 |
mesodermal cell | 3.79e-17 | 121 |
cardiocyte | 5.11e-12 | 16 |
multi fate stem cell | 1.24e-10 | 427 |
somatic stem cell | 8.96e-10 | 433 |
fibroblast | 4.24e-09 | 76 |
aortic smooth muscle cell | 6.97e-09 | 10 |
stem cell | 1.07e-08 | 441 |
embryonic cell | 7.05e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.68e-09 | 14 |