FFCP PHASE1:Hg19::chr1:209792111..209792127,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3914 | |EntrezGene=3914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6490 | |HGNC=6490 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=15bp_to_ENST00000455193_5end | |association_with_transcript=15bp_to_ENST00000455193_5end | ||
|cluster_id=chr1:209792111..209792127,- | |||
|description=CAGE_peak_8_at_LAMB3_5end | |description=CAGE_peak_8_at_LAMB3_5end | ||
|id=chr1:209792111..209792127,- | |id=chr1:209792111..209792127,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.09e-23;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;6.78e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.78e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0001950!8.21e-39!20;UBERON:0001869!3.38e-36!32;UBERON:0002619!3.40e-35!22;UBERON:0001893!6.36e-34!34;UBERON:0002020!1.00e-33!34;UBERON:0003528!1.00e-33!34;UBERON:0002780!2.51e-31!41;UBERON:0001890!2.51e-31!41;UBERON:0006240!2.51e-31!41;UBERON:0000956!8.22e-31!25;UBERON:0000203!8.22e-31!25;UBERON:0002791!1.31e-30!33;UBERON:0003080!1.65e-30!42;UBERON:0001017!2.29e-24!82;UBERON:0001049!2.45e-24!57;UBERON:0005068!2.45e-24!57;UBERON:0006241!2.45e-24!57;UBERON:0007135!2.45e-24!57;UBERON:0000955!4.01e-24!69;UBERON:0006238!4.01e-24!69;UBERON:0002616!2.17e-23!59;UBERON:0005743!4.96e-23!86;UBERON:0002346!2.49e-22!90;UBERON:0000200!5.09e-21!6;UBERON:0000073!1.97e-20!94;UBERON:0001016!1.97e-20!94;UBERON:0003056!5.59e-20!61;UBERON:0007023!3.05e-18!115;UBERON:0003075!7.54e-17!86;UBERON:0007284!7.54e-17!86;UBERON:0001872!1.01e-16!5;UBERON:0002771!1.42e-15!3;UBERON:0000924!6.66e-14!173;UBERON:0006601!6.66e-14!173;UBERON:0000033!3.37e-13!123;UBERON:0000153!2.22e-12!129;UBERON:0007811!2.22e-12!129;UBERON:0004121!1.77e-10!169;UBERON:0001871!2.35e-10!7;UBERON:0002021!3.55e-10!5;UBERON:0002079!8.81e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002079;2.09e-23;1!UBERON:0002346;3.29e-23;4!UBERON:0000923;3.29e-23;4!UBERON:0010316;3.29e-23;4!UBERON:0005291;3.29e-23;4!UBERON:0002050;8.66e-19;5!UBERON:0005423;8.66e-19;5!UBERON:0002021;1.93e-18;5!UBERON:0001950;4.85e-17;20!UBERON:0002619;1.34e-15;22!UBERON:0000956;7.46e-14;25!UBERON:0000203;7.46e-14;25!UBERON:0002081;2.07e-12;2!UBERON:0002360;2.90e-12;2!UBERON:0000094;2.90e-12;2!UBERON:0010743;2.90e-12;2!UBERON:0002791;4.30e-11;32!UBERON:0001869;4.30e-11;32!UBERON:0001893;9.47e-11;34!UBERON:0003528;8.30e-09;34!UBERON:0002020;8.30e-09;34!UBERON:0004151;1.04e-08;3!UBERON:0001870;1.30e-08;3!UBERON:0002780;1.83e-08;41!UBERON:0001890;1.83e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002079,2.10e-23,1;UBERON:0002021,1.77e-18,5;UBERON:0001950,5.06e-17,20;UBERON:0002619,1.39e-15,22;UBERON:0000956,7.72e-14,25;UBERON:0000203,7.72e-14,25;UBERON:0002081,2.07e-12,2;UBERON:0010227,2.07e-12,2;UBERON:0002360,2.59e-12,2;UBERON:0000094,2.59e-12,2;UBERON:0010743,2.59e-12,2;UBERON:0002791,5.42e-11,32;UBERON:0001869,5.42e-11,32;UBERON:0003528,2.18e-10,34;UBERON:0002020,2.18e-10,34;UBERON:0001893,2.18e-10,34;UBERON:0002346,4.27e-09,86;UBERON:0002780,1.02e-08,41;UBERON:0001890,1.02e-08,41;UBERON:0003080,1.02e-08,41;UBERON:0006240,1.02e-08,41;UBERON:0004151,1.04e-08,3;UBERON:0001870,1.51e-08,3;UBERON:0007023,6.77e-07,114;UBERON:0000073,7.51e-07,53;UBERON:0002616,7.51e-07,53;UBERON:0001017,9.67e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,10.5036788809903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,1.09692698576986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01297273529406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485996453264197,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.88922316233871,4.70955904184208,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0,1.02558182120378,0,0.691572524642179,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.887821342714695,0.546974809018219,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0,0.789273282754189,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08786384305464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,10.5036788809903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,1.09692698576986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01297273529406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485996453264197,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.88922316233871,4.70955904184208,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0,1.02558182120378,0,0.691572524642179,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.887821342714695,0.546974809018219,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0,0.789273282754189,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08786384305464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@LAMB3 | |short_description=p8@LAMB3 | ||
}} | }} |
Latest revision as of 19:23, 24 September 2015
Short description: | p8@LAMB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LAMB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000455193_5end |
EntrezGene: | LAMB3 |
HGNC: | 6490 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
left cardiac atrium | 2.10e-23 | 1 |
occipital lobe | 1.77e-18 | 5 |
neocortex | 5.06e-17 | 20 |
regional part of cerebral cortex | 1.39e-15 | 22 |
cerebral cortex | 7.72e-14 | 25 |
pallium | 7.72e-14 | 25 |
cardiac atrium | 2.07e-12 | 2 |
future cardiac atrium | 2.07e-12 | 2 |
meninx | 2.59e-12 | 2 |
membrane organ | 2.59e-12 | 2 |
meningeal cluster | 2.59e-12 | 2 |
regional part of telencephalon | 5.42e-11 | 32 |
cerebral hemisphere | 5.42e-11 | 32 |
brain grey matter | 2.18e-10 | 34 |
gray matter | 2.18e-10 | 34 |
telencephalon | 2.18e-10 | 34 |
neurectoderm | 4.27e-09 | 86 |
regional part of forebrain | 1.02e-08 | 41 |
forebrain | 1.02e-08 | 41 |
anterior neural tube | 1.02e-08 | 41 |
future forebrain | 1.02e-08 | 41 |
cardiac chamber | 1.04e-08 | 3 |
frontal cortex | 1.51e-08 | 3 |
adult organism | 6.77e-07 | 114 |
regional part of nervous system | 7.51e-07 | 53 |
regional part of brain | 7.51e-07 | 53 |
central nervous system | 9.67e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.78e-10 | 10 |