FFCP PHASE1:Mm9::chr1:194681917..194681930,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=214791 | |EntrezGene=214791 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=A7DTG3 | |UniProt=A7DTG3 | ||
|association_with_transcript=-2bp_to_ENSMUST00000016406_5end | |association_with_transcript=-2bp_to_ENSMUST00000016406_5end | ||
|cluster_id=chr1:194681917..194681930,- | |||
|description=CAGE_peak_4_at_Sertad4_5end | |description=CAGE_peak_4_at_Sertad4_5end | ||
|id=chr1:194681917..194681930,- | |id=chr1:194681917..194681930,- | ||
|ontology_enrichment_celltype=CL:0000117!2.81e-13!23;CL:0000337!2.81e-13!23;CL:0000540!1.22e-07!33;CL:0000047!1.22e-07!33;CL:0000031!1.22e-07!33;CL:0000404!1.22e-07!33;CL:0000393!1.54e-07!39;CL:0000211!1.54e-07!39;CL:0000221!4.21e-07!44;CL:0000133!4.21e-07!44;CL:0002319!4.41e-07!43 | |ontology_enrichment_celltype=CL:0000117!2.81e-13!23;CL:0000337!2.81e-13!23;CL:0000540!1.22e-07!33;CL:0000047!1.22e-07!33;CL:0000031!1.22e-07!33;CL:0000404!1.22e-07!33;CL:0000393!1.54e-07!39;CL:0000211!1.54e-07!39;CL:0000221!4.21e-07!44;CL:0000133!4.21e-07!44;CL:0002319!4.41e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-33,23;CL:0000337,3.48e-33,23;CL:0000540,3.25e-24,33;CL:0000047,3.25e-24,33;CL:0000031,3.25e-24,33;CL:0000404,3.25e-24,33;CL:0000393,1.44e-21,39;CL:0000211,1.44e-21,39;CL:0002319,2.71e-19,43;CL:0000221,1.00e-18,44;CL:0000133,1.00e-18,44;CL:0002321,5.93e-16,70;CL:0002609,6.03e-14,6;CL:0000723,7.78e-09,91;CL:0000048,7.78e-09,91;CL:0002608,3.09e-08,3;CL:0000034,6.34e-08,97;CL:0000120,7.83e-08,3;CL:0000068,7.08e-07,3;CL:0002202,7.08e-07,3;CL:0000069,7.08e-07,3;CL:0002632,7.08e-07,3;CL:0002368,7.08e-07,3;CL:0000307,7.08e-07,3;CL:0000377,7.08e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.80e-12,34;UBERON:0001017,2.30e-11,73;UBERON:0000073,5.97e-11,54;UBERON:0001016,6.64e-11,75;UBERON:0001049,5.43e-09,52;UBERON:0005068,5.43e-09,52;UBERON:0006241,5.43e-09,52;UBERON:0007135,5.43e-09,52;UBERON:0002420,1.25e-08,8;UBERON:0007245,1.25e-08,8;UBERON:0010009,1.25e-08,8;UBERON:0010011,1.25e-08,8;UBERON:0000454,1.25e-08,8;UBERON:0003528,2.36e-08,29;UBERON:0002791,2.36e-08,29;UBERON:0001893,2.36e-08,29;UBERON:0004121,2.11e-07,95;UBERON:0000924,2.11e-07,95;UBERON:0006601,2.11e-07,95;UBERON:0002102,2.87e-07,7;UBERON:0004710,2.87e-07,7;UBERON:0005419,2.87e-07,7;UBERON:0005417,2.87e-07,7;UBERON:0005729,2.87e-07,7;UBERON:0000369,5.27e-07,5;UBERON:0002435,5.27e-07,5;UBERON:0000204,5.27e-07,5;UBERON:0010082,5.27e-07,5;UBERON:0003126,7.08e-07,3;UBERON:0001005,7.08e-07,3;UBERON:0007196,7.08e-07,3;UBERON:0001558,7.08e-07,3 | |||
|phase1_expression=3.20297694209588,0.348975407639361,0.454999239389536,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0.612508068787107,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0.550640256485045,1.56478268869608,0,0.219686182734472,0.194429899074283,0.419959264876088,0,0,0,0,1.02903774414379,0,0,3.43937983461316,3.1739458756322,1.90149421051854,0.677689064138264,1.77858959222228,0,0,0,0.599200221036809,0.384218305321555,2.07379224616955,1.4850653216486,1.68259969081106,1.14260393761521,0.883474163806454,3.55223317723367,6.3258010872036,4.5960939330501,0,1.40456071893706,1.53606533256243,1.18697658957174,3.01909223887952,1.04182674111352,1.11673199600552,1.12552522006336,0.45839474333043,1.47314292736834,1.56608848879013,1.1183966749518,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.280888840263504,1.70430322578058,0.519572009205738,1.41335829804136,0.281686839553361,1.28326477414318,0,0,1.08245520505607,2.02687892380079,1.51657333504435,0.22836775943812,0,0.29688427812965,0.867426633830679,0,0,0.904335843315735,0.587943535678524,0.753999547978053,0,0,0,0.970601099684455,0,0.484875253135222,0,0,0.209446706813455,0.255457055208591,0,0,0,0.149790639404823,0.915001205637253,4.14659361972453,0,0.255715457330331,0.41557608911912,0,0.712875546952214,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.884474488967262,0.384341160854549,0.562210347358373,0,1.07783996466421,0.756424320671277,1.93546236580344,1.97276159184817,1.39023624612799,1.39300866608867,0.823128545631774,0,0,0,0,0.207125772535502,1.40715635988658,0.900310307305074,0.710234206755631,0.393528463494808,0.771335564436891,1.16266972375204,0,0.233530684734339,0.493679549740441,0.492502392237286,0.0810688095458557,0.292399974850665,0,0.268412837520744,0.210289948564127,0.720332286654991,0,0.264450566663544,0.426576501070468,0.696710015581316,0.257734922644187,0.605050573870028,0,0.190225626112559,0,0,0,0.198956472041151,0.58489226135736,0,0,0.199141273254367,0,0.685491075658373,0,0.203651327845314,0.775809948670503,0.771494018793504,0.189709611372772,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.977789858652155,0,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0.163863314715738,0.690739927463582,0,0,0,0,0,0.321101179975584,0.468846746368813,0.327869890753351,0.252470927204373,0,0,0,0,0,0,0.809621403349789,0,0,0.642642632843614,0.425820255624806,0.534196811001766,0.651547837414304,0.329940245945071,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0,0.356497378384721,0,0,0,0,0.720244376125241,0.388076051348264,0.857348140126369,0.886701168211368,1.07021290561242,0.658196082408484,0.304464949114599,0.23467170806371,0.21183207086382,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0.835606408021955,0.328281799490123,0,0,0,0,0.185194527369712,0,0.136694227721025,0,0.169978429993855,0,0,0,0.474503990371703,0.406638934253697,0.756037385752609,0.209088296014469,0,0.134864346384821,0.743881101528023,0.26175594198403,0.129614973291793,0,0,0.747582730219894,0.496375471371293,0.972255941720238,0.387479470433193,0.506868376472335,0.469428954583016,0.651021924219751,0.314578033277133,0,0.288030006257865,0,0,0.205421914329655,0,0,0,0.120195449519969,0,0.403865799792591,0.15241361331,0.302478555410522,0,0,0.116876902181569,0,0,0.179427713218951,0,0.386379188064381,0,0.36630324853453,0.214368379079066,0,0.564751842617067,0.460325236507177,0,0.515559547031063,0,0,0,0,0,0,1.45302286617847,0,1.36586884603307,0.243106717068294,1.04806581313991,0.735374033800057,0.222246727801615,0,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.768301828858431,0.976402972245426,0.952587382566147,0.811190281613988,0.77163688185482,0.824171801606613,0.441596760403192,0,0.887379030796687,0.953744759789284,0,0.376437521661322,0.338458431566706,0.365855945745545,0.263069711437843,0.407412341537585,0,0.355905054372522,0.29551344712669,0.409231043169689,1.23949472948773,0.192906610981141,1.74867404556562,0.701794825336225,0.214871054048298,0.57386499620653,0.441182838239031,0 | |phase1_expression=3.20297694209588,0.348975407639361,0.454999239389536,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0.612508068787107,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0.550640256485045,1.56478268869608,0,0.219686182734472,0.194429899074283,0.419959264876088,0,0,0,0,1.02903774414379,0,0,3.43937983461316,3.1739458756322,1.90149421051854,0.677689064138264,1.77858959222228,0,0,0,0.599200221036809,0.384218305321555,2.07379224616955,1.4850653216486,1.68259969081106,1.14260393761521,0.883474163806454,3.55223317723367,6.3258010872036,4.5960939330501,0,1.40456071893706,1.53606533256243,1.18697658957174,3.01909223887952,1.04182674111352,1.11673199600552,1.12552522006336,0.45839474333043,1.47314292736834,1.56608848879013,1.1183966749518,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.280888840263504,1.70430322578058,0.519572009205738,1.41335829804136,0.281686839553361,1.28326477414318,0,0,1.08245520505607,2.02687892380079,1.51657333504435,0.22836775943812,0,0.29688427812965,0.867426633830679,0,0,0.904335843315735,0.587943535678524,0.753999547978053,0,0,0,0.970601099684455,0,0.484875253135222,0,0,0.209446706813455,0.255457055208591,0,0,0,0.149790639404823,0.915001205637253,4.14659361972453,0,0.255715457330331,0.41557608911912,0,0.712875546952214,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.884474488967262,0.384341160854549,0.562210347358373,0,1.07783996466421,0.756424320671277,1.93546236580344,1.97276159184817,1.39023624612799,1.39300866608867,0.823128545631774,0,0,0,0,0.207125772535502,1.40715635988658,0.900310307305074,0.710234206755631,0.393528463494808,0.771335564436891,1.16266972375204,0,0.233530684734339,0.493679549740441,0.492502392237286,0.0810688095458557,0.292399974850665,0,0.268412837520744,0.210289948564127,0.720332286654991,0,0.264450566663544,0.426576501070468,0.696710015581316,0.257734922644187,0.605050573870028,0,0.190225626112559,0,0,0,0.198956472041151,0.58489226135736,0,0,0.199141273254367,0,0.685491075658373,0,0.203651327845314,0.775809948670503,0.771494018793504,0.189709611372772,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.977789858652155,0,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0.163863314715738,0.690739927463582,0,0,0,0,0,0.321101179975584,0.468846746368813,0.327869890753351,0.252470927204373,0,0,0,0,0,0,0.809621403349789,0,0,0.642642632843614,0.425820255624806,0.534196811001766,0.651547837414304,0.329940245945071,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0,0.356497378384721,0,0,0,0,0.720244376125241,0.388076051348264,0.857348140126369,0.886701168211368,1.07021290561242,0.658196082408484,0.304464949114599,0.23467170806371,0.21183207086382,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0.835606408021955,0.328281799490123,0,0,0,0,0.185194527369712,0,0.136694227721025,0,0.169978429993855,0,0,0,0.474503990371703,0.406638934253697,0.756037385752609,0.209088296014469,0,0.134864346384821,0.743881101528023,0.26175594198403,0.129614973291793,0,0,0.747582730219894,0.496375471371293,0.972255941720238,0.387479470433193,0.506868376472335,0.469428954583016,0.651021924219751,0.314578033277133,0,0.288030006257865,0,0,0.205421914329655,0,0,0,0.120195449519969,0,0.403865799792591,0.15241361331,0.302478555410522,0,0,0.116876902181569,0,0,0.179427713218951,0,0.386379188064381,0,0.36630324853453,0.214368379079066,0,0.564751842617067,0.460325236507177,0,0.515559547031063,0,0,0,0,0,0,1.45302286617847,0,1.36586884603307,0.243106717068294,1.04806581313991,0.735374033800057,0.222246727801615,0,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.768301828858431,0.976402972245426,0.952587382566147,0.811190281613988,0.77163688185482,0.824171801606613,0.441596760403192,0,0.887379030796687,0.953744759789284,0,0.376437521661322,0.338458431566706,0.365855945745545,0.263069711437843,0.407412341537585,0,0.355905054372522,0.29551344712669,0.409231043169689,1.23949472948773,0.192906610981141,1.74867404556562,0.701794825336225,0.214871054048298,0.57386499620653,0.441182838239031,0 | ||
|short_description=p4@Sertad4 | |short_description=p4@Sertad4 | ||
}} | }} |
Latest revision as of 00:33, 27 September 2015
Short description: | p4@Sertad4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sertad4_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -2bp_to_ENSMUST00000016406_5end |
EntrezGene: | Sertad4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.48e-33 | 23 |
neuroblast (sensu Vertebrata) | 3.48e-33 | 23 |
neuron | 3.25e-24 | 33 |
neuronal stem cell | 3.25e-24 | 33 |
neuroblast | 3.25e-24 | 33 |
electrically signaling cell | 3.25e-24 | 33 |
electrically responsive cell | 1.44e-21 | 39 |
electrically active cell | 1.44e-21 | 39 |
neural cell | 2.71e-19 | 43 |
ectodermal cell | 1.00e-18 | 44 |
neurectodermal cell | 1.00e-18 | 44 |
embryonic cell | 5.93e-16 | 70 |
neuron of cerebral cortex | 6.03e-14 | 6 |
somatic stem cell | 7.78e-09 | 91 |
multi fate stem cell | 7.78e-09 | 91 |
hippocampal neuron | 3.09e-08 | 3 |
stem cell | 6.34e-08 | 97 |
granule cell | 7.83e-08 | 3 |
duct epithelial cell | 7.08e-07 | 3 |
epithelial cell of tracheobronchial tree | 7.08e-07 | 3 |
branched duct epithelial cell | 7.08e-07 | 3 |
epithelial cell of lower respiratory tract | 7.08e-07 | 3 |
respiratory epithelial cell | 7.08e-07 | 3 |
tracheal epithelial cell | 7.08e-07 | 3 |
tracheoblast | 7.08e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.80e-12 | 34 |
central nervous system | 2.30e-11 | 73 |
regional part of nervous system | 5.97e-11 | 54 |
nervous system | 6.64e-11 | 75 |
neural tube | 5.43e-09 | 52 |
neural rod | 5.43e-09 | 52 |
future spinal cord | 5.43e-09 | 52 |
neural keel | 5.43e-09 | 52 |
basal ganglion | 1.25e-08 | 8 |
nuclear complex of neuraxis | 1.25e-08 | 8 |
aggregate regional part of brain | 1.25e-08 | 8 |
collection of basal ganglia | 1.25e-08 | 8 |
cerebral subcortex | 1.25e-08 | 8 |
brain grey matter | 2.36e-08 | 29 |
regional part of telencephalon | 2.36e-08 | 29 |
telencephalon | 2.36e-08 | 29 |
ectoderm-derived structure | 2.11e-07 | 95 |
ectoderm | 2.11e-07 | 95 |
presumptive ectoderm | 2.11e-07 | 95 |
forelimb | 2.87e-07 | 7 |
pectoral appendage | 2.87e-07 | 7 |
pectoral appendage bud | 2.87e-07 | 7 |
forelimb bud | 2.87e-07 | 7 |
forelimb/pectoral fin field | 2.87e-07 | 7 |
corpus striatum | 5.27e-07 | 5 |
striatum | 5.27e-07 | 5 |
ventral part of telencephalon | 5.27e-07 | 5 |
future corpus striatum | 5.27e-07 | 5 |
trachea | 7.08e-07 | 3 |
respiratory airway | 7.08e-07 | 3 |
tracheobronchial tree | 7.08e-07 | 3 |
lower respiratory tract | 7.08e-07 | 3 |