Personal tools

FF:11224-116B9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|DRA_sample_Accession=CAGE@SAMD00005512
|DRA_sample_Accession=CAGE@SAMD00005512
|HumanCAGEScanFiles=NCig10040;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.pairs.bed.gz
|HumanCAGEScanFiles=NCig10040;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520Monocytes%252c%2520donor1.NCig10040.11224-116B9.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008126;DRR008998;DRZ000423;DRZ001808
|accession_numbers=CAGE;DRX008126;DRR008998;DRZ000423;DRZ001808;DRZ011773;DRZ013158
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
Line 66: Line 66:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10008,,,
|profile_srnaseq=SRhi10008,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.367478412259189,0.0681306452555639,0,0.191449731291012,0.635882918321575,-0.160318030086386,0.191449731291012,0.358520786128061,-0.186678694931436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.038126720942584,0,0,0,0.344119467239484,0,-0.0979578962680575,0,0.5697217069788,-0.132956589778862,0,0,0,0.191449731291012,0,0,0,0.88354475051838,0,0.191449731291012,0,0,0.177968997683022,0,0,0,0,0.095724865645506,0,0.323868714649035,0,0.0715098445326715,0,0,0,0.323868714649035,0,0,0,0.0944573700484065,0,1.13804660674969,0.0941061040779147,0,0.968946468215534,0,0,0,0,0.815574699308565,0,0,0,1.64006031959327,0,0,0.88354475051838,0,0,0,0.333099650378221,0.095724865645506,0,0,0.250342230875413,0,0,-0.20688797480098,0,0,0,0.246878104536486,-0.049263045371351,0,0,0.799830634944575,0,0.815881253175497,0.0741257011464785,0,0,0,0,0,0.541031816433245,0,0,0,0,0,0,0.257659222970024,0,0,0,0,0.116229308024913,0.191449731291012,0,0,0.116365956750941,0.304859658015526,0,0.323868714649035,0,0,0,0
|repeat_enrich_byfamily=0,0,0.367478412259189,0.0681306452555639,0,0.191449731291012,0.635882918321575,-0.160318030086386,0.191449731291012,0.358520786128061,-0.186678694931436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.038126720942584,0,0,0,0.344119467239484,0,-0.0979578962680575,0,0.5697217069788,-0.132956589778862,0,0,0,0.191449731291012,0,0,0,0.88354475051838,0,0.191449731291012,0,0,0.177968997683022,0,0,0,0,0.095724865645506,0,0.323868714649035,0,0.0715098445326715,0,0,0,0.323868714649035,0,0,0,0.0944573700484065,0,1.13804660674969,0.0941061040779147,0,0.968946468215534,0,0,0,0,0.815574699308565,0,0,0,1.64006031959327,0,0,0.88354475051838,0,0,0,0.333099650378221,0.095724865645506,0,0,0.250342230875413,0,0,-0.20688797480098,0,0,0,0.246878104536486,-0.049263045371351,0,0,0.799830634944575,0,0.815881253175497,0.0741257011464785,0,0,0,0,0,0.541031816433245,0,0,0,0,0,0,0.257659222970024,0,0,0,0,0.116229308024913,0.191449731291012,0,0,0.116365956750941,0.304859658015526,0,0.323868714649035,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.815881253175497,0,0,0.191449731291012,0,0.191449731291012,0,0,0,0,0,0,-0.0557291439945528,0,-0.282636487460997,0.281690661371275,0.253656779954274,0.323868714649035,-0.00183504083963851,0,0,0,0,0.323868714649035,0,0.191449731291012,0.425205803894747,0,0.0633298643384469,0.191449731291012,-0.0504125515893149,0,0.191449731291012,0,0,0.077099584561655,0.814703381120484,0.323868714649035,-0.078533195504004,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0,-0.405633195104471,0.451601063127367,0,0,0,-0.212710631150145,-0.241245198968463,0,0,0.196161607408914,0.58237335733042,0,0,-0.391044581551635,0,-0.085797384309162,0.065228471468892,0,-0.0406984276023844,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.690792502533608,-0.0304099808375785,0,0,0,-0.251361085130802,0,-0.0138323107379372,-0.373286155956567,-0.0652471236285346,0.110338029535667,0.373255501048197,0,1.38463602740587,0.302138157257111,0.713332823091133,0.339722989815257,-0.147401849371139,-0.189981719549847,0,-0.20688797480098,0.0646154630258525,0.0639972183877167,0.284658724764879,-0.0638061967873848,-0.45427479386268,0.0205107556734117,0,0,0,-0.188805081667367,0,0,0.198124220002195,0.360503048977476,-0.287093218045175,0.157179627798629,-0.389293859982711,-0.148016140194891,-0.0395325284566706,0.277520371621784,0,-0.325847459258194,0,0,0.22201932692135,0.053713007204714,0.231868992105254,1.11804135646694,0,0.399567288707399,-0.0683442610773682,0,0.022966438022743,0.0931184535999303,0,0,0.390169237344122,0,0,0,0,0,-0.225913450584272,0.0368465625398963,0.09101315309349,0,0.0353527302976018,-0.0319453789309593,0.159672221854016,0,0.311266518494055,0.177858817191641,0,0.283704900973827,0,-0.16629428988762,-0.696661868948113,0.0264590349520088,-0.422394805391737,0.133002904479186,0.994422720075565,0.142507440389539,-0.140430832092562,0.205109964317814,-0.101364614532639,-0.0881268324752877,0,0,1.56480015572604,0.125122327329851,-0.370927002282198,0,-0.161167836587301,0,0.348591518613892,0.255221416728599,0.405182535147692,-0.0331201915646913,0.732433722074267,0.307224581165159,0,-0.109632853573678,-0.788130937773974,0,-0.0809346418809688,0.0300852006194656,0,-0.150367083334639,-0.506246235221571,0.497977388636805,-0.138989456679195,0,-0.790080158389657,0,0,-0.221421889241166,0.088392676884646,0,0.279547049039197,0.333099650378221,0.497321516878769,0.309234730459813,0,0,-0.454250606701713,0,0,-0.60592806381803,0,-0.428333592667622,1.22100301743628,0,0.103980092493118,0,0,0.0139219653258359,0,0.0116695060494864,0,0.323868714649035,-0.154156430953318,0,0,0.788240133249906,0,0.14885377668172,0,0,0,0,0,0,0,-0.250985285454276,0.070372473678299,0,0.114071798774997,0,0,0,0,0,0,0,0,-1.01599213324961,-0.100594796458383,0.0684323156145913,0,0,0,0,-0.215723402553475,0.790813267013316,0.191449731291012,0.504020211823943,0,0,0,0,0.237727724859823,0,0.688238934478968,0,0.388566857212213,-0.057730457053664,0.0336385767299072,0.323868714649035,0,0,0.148251402292957,0.323868714649035,0,0,0,0.576939156724669,0,0,-0.440480442095368,0,0.250486808215028,-0.0815818795468414,0,0.162481697929347,-0.0234409489171412,-0.985751625999427,0,0,0.374535786531688,0,0,0.0257310065151362,0,0,0,0,0,0.388566857212213,0,0,1.59966126988915,-0.022864781108744,0,0,0,0,0,0.323868714649035,0,0,0,0,0,0.268700150027172,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.0163786676851775,0,0,0.124576822933932,0,0,0,0,0,0.164456978658333,0,0,0,0,0,0.0944573700484065,0,0.635882918321575,0.635882918321575,0.734956824518378,-0.373357389862872,0,1.08206363286649,0.358520786128061,0,0.0745891498308152,0,0,0,0,0,0,0,0,0,0,0,0.0681306452555639,0.386965203050546,0,0,0,0,0,0.191449731291012,0,0.0490354164429443,0,0,0,0,-0.113884373708977,0,0,0,0.0866533465018552,0,-0.160318030086386,0.191449731291012,0.688238934478968,0,0.49702491455402,0,0.191449731291012,0.095724865645506,0,0,0,0,0,0,0,0.413666324806294,0,0.815574699308565,0,0,0,0,-0.346498056199782,0,0,0.065515456914409,0,0,-0.232628352633041,0,0.099613237644357,0,0,0.191449731291012,0.930766921507304,-0.031340424028527,0,0,0,0.191449731291012,0,0,0.257659222970024,0,0.095724865645506,1.74265876506443,0.095724865645506,0.437436193537233,0.603706732583708,0,0,0,0,0.323868714649035,0.191449731291012,0,0,0.913916604413204,0,0.425205803894747,0,0.462110134996578,0,0,0,0,0,0,0,-0.0979578962680575,0,0,1.5298755739316,0,0,0,0,0,0,0.029964618504078,-0.12128604249863,-0.0067005114281205,0,0,0,-0.054385572482455,0.323868714649035,0,-0.0118061081378333,0,-0.0667773874189013,0,0,1.23212835282513,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.038126720942584,0,0,0,0,0,0,0.57760559594609,0,0,0,0,0,0.161934357324517,0.450103710109549,0,0,0,0,0,0,0,0,0,0,0.323868714649035,0,0.323868714649035,0.850888092139864,0.161934357324517,0,0.471151282295808,0,0.308327767592879,0,0.323868714649035,1.08349470532013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253656779954274,0,0,0,0,-0.0800184682686384,0,0,0,1.3743068970997,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,1.18763014423517,0,0,0,0,0,0.507313559908549,0,0.329527957567984,0,0,0,0,0,0,0,0,0,0.88354475051838,0,0,0,-0.0482220752390542,0,0.107073099060985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792940505132802,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.102251486259942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0621608769974935,0,0,0.0565087805489361,0,0,0,0,0,0,0,0,0,0,0,0,0.262548535498908,0,0,0,0,0,0,0,0,0,0,0.143019689065343,0,0.161934357324517,1.297450681695,0,0.191449731291012,0.323868714649035,0,0,0.191449731291012,0,0,0,0,0,0,0.44177237525919,0.323868714649035,0.635882918321575,0,0,0,0,1.64006031959327,0,0,0,0.850888092139864,0,0,0,0.139613644979107,0.304859658015526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.815574699308565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.688238934478968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0338427811048142,0.425444046069932,0.44177237525919,0,0,0,0,0,0,0,0.288169352785031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317941459160787,0,0,0,0,0,-0.0296969223726757,0.541826132739306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,-0.428946687458592,0,0,0,0,0,0,0,0,0.191449731291012,0,0.751906816893766,0,0.323868714649035,0.913916604413204,0,0,0,0,0.576338705570063,0,0.191449731291012,0,0,0,0,0,0,0.942302564591617,0,0,0,0,0,0,0,0,0,0,0,0,0.635882918321575,0,0.323868714649035,0,0,0,0,0.191449731291012,0,1.12837437498312,0,0,0.507313559908549,0,0,0,0.095724865645506,0,0,0,0,0.88354475051838,0.576338705570063,0,0,0.036926308272821,0,0.232458616049825,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0.926839608436767,0,0,0.850888092139864,0,0.425205803894747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760656499691829,0,0,0,0,0,0,0,0.0687537342940107,0,0,0,0,0,0,0,0,0,0,0,0.734956824518378,0,0,0,0,0.095724865645506,1.64006031959327,0,0.415591137278792,0.095724865645506,0.074784444666621,0,0.323868714649035,0.191449731291012,0.807214923513396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0.88354475051838,0,0,0,0.191449731291012,0.256452766736648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323868714649035,0,0.683754184243182,0.191449731291012,0,0,0,0,0.095724865645506,0.095724865645506,0,0.850888092139864,0,0.6552148258534,0,0,0,0,0,0,0.291917246530216,0.191449731291012,0,0.72572880881507,0,0,0,0,0,0,0,0,0.0941061040779147,0,0,1.13804660674969,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0.815574699308565,0.425205803894747,0,0,0,0,0,0,0.323868714649035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34938164559978,0,0,0,0.0616145441506535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43984433288499,0,0,0,0,0,0.308327767592879,0,0,0.191449731291012,0.450834272210819,0,0.323868714649035,0,0,0,0,0,0.367478412259189,0.507313559908549,0,0.212406688426467,0.585861548327475,0,0,0.968946468215534,0.576338705570063,0,0,0,0,0,0,0,0,0,0.0343073680744806,0.388566857212213,0,0.734956824518378,0.0121999911091959,0,0,-0.0422874684771159,0,0.106321748745116,0.202753322768045,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0,0.332541227667185,0,0.161934357324517,-0.137338502423895,0.191449731291012,0,0,0.191449731291012,0.191449731291012,0,0,0,0,0,0,0,0.191449731291012,0,0,0,1.08206363286649,0,0,0.095724865645506,0,0,0.72038985621411,0.535502603985599,0,0.16518478205233,0.38005902590241,0,0,0.0902207420267522,0,0.0297679747946453,0,0.323868714649035,0,1.68844538343488,0.670863450635661,0,0,0.191449731291012,0.815574699308565,0,0,0,0.898730677465792,0.323868714649035,0,0.507313559908549,0,0.257659222970024,0.344119467239484,0,0,0,0,0.45045461374595,0.23783792431398,0,-0.378836254350424,0,0,-0.026613491942967,0,0,0,-0.0959594073735869
|repeat_enrich_byname=0,0,0,0,0.815881253175497,0,0,0.191449731291012,0,0.191449731291012,0,0,0,0,0,0,-0.0557291439945528,0,-0.282636487460997,0.281690661371275,0.253656779954274,0.323868714649035,-0.00183504083963851,0,0,0,0,0.323868714649035,0,0.191449731291012,0.425205803894747,0,0.0633298643384469,0.191449731291012,-0.0504125515893149,0,0.191449731291012,0,0,0.077099584561655,0.814703381120484,0.323868714649035,-0.078533195504004,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0,-0.405633195104471,0.451601063127367,0,0,0,-0.212710631150145,-0.241245198968463,0,0,0.196161607408914,0.58237335733042,0,0,-0.391044581551635,0,-0.085797384309162,0.065228471468892,0,-0.0406984276023844,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.690792502533608,-0.0304099808375785,0,0,0,-0.251361085130802,0,-0.0138323107379372,-0.373286155956567,-0.0652471236285346,0.110338029535667,0.373255501048197,0,1.38463602740587,0.302138157257111,0.713332823091133,0.339722989815257,-0.147401849371139,-0.189981719549847,0,-0.20688797480098,0.0646154630258525,0.0639972183877167,0.284658724764879,-0.0638061967873848,-0.45427479386268,0.0205107556734117,0,0,0,-0.188805081667367,0,0,0.198124220002195,0.360503048977476,-0.287093218045175,0.157179627798629,-0.389293859982711,-0.148016140194891,-0.0395325284566706,0.277520371621784,0,-0.325847459258194,0,0,0.22201932692135,0.053713007204714,0.231868992105254,1.11804135646694,0,0.399567288707399,-0.0683442610773682,0,0.022966438022743,0.0931184535999303,0,0,0.390169237344122,0,0,0,0,0,-0.225913450584272,0.0368465625398963,0.09101315309349,0,0.0353527302976018,-0.0319453789309593,0.159672221854016,0,0.311266518494055,0.177858817191641,0,0.283704900973827,0,-0.16629428988762,-0.696661868948113,0.0264590349520088,-0.422394805391737,0.133002904479186,0.994422720075565,0.142507440389539,-0.140430832092562,0.205109964317814,-0.101364614532639,-0.0881268324752877,0,0,1.56480015572604,0.125122327329851,-0.370927002282198,0,-0.161167836587301,0,0.348591518613892,0.255221416728599,0.405182535147692,-0.0331201915646913,0.732433722074267,0.307224581165159,0,-0.109632853573678,-0.788130937773974,0,-0.0809346418809688,0.0300852006194656,0,-0.150367083334639,-0.506246235221571,0.497977388636805,-0.138989456679195,0,-0.790080158389657,0,0,-0.221421889241166,0.088392676884646,0,0.279547049039197,0.333099650378221,0.497321516878769,0.309234730459813,0,0,-0.454250606701713,0,0,-0.60592806381803,0,-0.428333592667622,1.22100301743628,0,0.103980092493118,0,0,0.0139219653258359,0,0.0116695060494864,0,0.323868714649035,-0.154156430953318,0,0,0.788240133249906,0,0.14885377668172,0,0,0,0,0,0,0,-0.250985285454276,0.070372473678299,0,0.114071798774997,0,0,0,0,0,0,0,0,-1.01599213324961,-0.100594796458383,0.0684323156145913,0,0,0,0,-0.215723402553475,0.790813267013316,0.191449731291012,0.504020211823943,0,0,0,0,0.237727724859823,0,0.688238934478968,0,0.388566857212213,-0.057730457053664,0.0336385767299072,0.323868714649035,0,0,0.148251402292957,0.323868714649035,0,0,0,0.576939156724669,0,0,-0.440480442095368,0,0.250486808215028,-0.0815818795468414,0,0.162481697929347,-0.0234409489171412,-0.985751625999427,0,0,0.374535786531688,0,0,0.0257310065151362,0,0,0,0,0,0.388566857212213,0,0,1.59966126988915,-0.022864781108744,0,0,0,0,0,0.323868714649035,0,0,0,0,0,0.268700150027172,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.0163786676851775,0,0,0.124576822933932,0,0,0,0,0,0.164456978658333,0,0,0,0,0,0.0944573700484065,0,0.635882918321575,0.635882918321575,0.734956824518378,-0.373357389862872,0,1.08206363286649,0.358520786128061,0,0.0745891498308152,0,0,0,0,0,0,0,0,0,0,0,0.0681306452555639,0.386965203050546,0,0,0,0,0,0.191449731291012,0,0.0490354164429443,0,0,0,0,-0.113884373708977,0,0,0,0.0866533465018552,0,-0.160318030086386,0.191449731291012,0.688238934478968,0,0.49702491455402,0,0.191449731291012,0.095724865645506,0,0,0,0,0,0,0,0.413666324806294,0,0.815574699308565,0,0,0,0,-0.346498056199782,0,0,0.065515456914409,0,0,-0.232628352633041,0,0.099613237644357,0,0,0.191449731291012,0.930766921507304,-0.031340424028527,0,0,0,0.191449731291012,0,0,0.257659222970024,0,0.095724865645506,1.74265876506443,0.095724865645506,0.437436193537233,0.603706732583708,0,0,0,0,0.323868714649035,0.191449731291012,0,0,0.913916604413204,0,0.425205803894747,0,0.462110134996578,0,0,0,0,0,0,0,-0.0979578962680575,0,0,1.5298755739316,0,0,0,0,0,0,0.029964618504078,-0.12128604249863,-0.0067005114281205,0,0,0,-0.054385572482455,0.323868714649035,0,-0.0118061081378333,0,-0.0667773874189013,0,0,1.23212835282513,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.038126720942584,0,0,0,0,0,0,0.57760559594609,0,0,0,0,0,0.161934357324517,0.450103710109549,0,0,0,0,0,0,0,0,0,0,0.323868714649035,0,0.323868714649035,0.850888092139864,0.161934357324517,0,0.471151282295808,0,0.308327767592879,0,0.323868714649035,1.08349470532013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253656779954274,0,0,0,0,-0.0800184682686384,0,0,0,1.3743068970997,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,1.18763014423517,0,0,0,0,0,0.507313559908549,0,0.329527957567984,0,0,0,0,0,0,0,0,0,0.88354475051838,0,0,0,-0.0482220752390542,0,0.107073099060985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792940505132802,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.102251486259942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0621608769974935,0,0,0.0565087805489361,0,0,0,0,0,0,0,0,0,0,0,0,0.262548535498908,0,0,0,0,0,0,0,0,0,0,0.143019689065343,0,0.161934357324517,1.297450681695,0,0.191449731291012,0.323868714649035,0,0,0.191449731291012,0,0,0,0,0,0,0.44177237525919,0.323868714649035,0.635882918321575,0,0,0,0,1.64006031959327,0,0,0,0.850888092139864,0,0,0,0.139613644979107,0.304859658015526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.815574699308565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.688238934478968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0338427811048142,0.425444046069932,0.44177237525919,0,0,0,0,0,0,0,0.288169352785031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317941459160787,0,0,0,0,0,-0.0296969223726757,0.541826132739306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,-0.428946687458592,0,0,0,0,0,0,0,0,0.191449731291012,0,0.751906816893766,0,0.323868714649035,0.913916604413204,0,0,0,0,0.576338705570063,0,0.191449731291012,0,0,0,0,0,0,0.942302564591617,0,0,0,0,0,0,0,0,0,0,0,0,0.635882918321575,0,0.323868714649035,0,0,0,0,0.191449731291012,0,1.12837437498312,0,0,0.507313559908549,0,0,0,0.095724865645506,0,0,0,0,0.88354475051838,0.576338705570063,0,0,0.036926308272821,0,0.232458616049825,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0.926839608436767,0,0,0.850888092139864,0,0.425205803894747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191449731291012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760656499691829,0,0,0,0,0,0,0,0.0687537342940107,0,0,0,0,0,0,0,0,0,0,0,0.734956824518378,0,0,0,0,0.095724865645506,1.64006031959327,0,0.415591137278792,0.095724865645506,0.074784444666621,0,0.323868714649035,0.191449731291012,0.807214923513396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0.88354475051838,0,0,0,0.191449731291012,0.256452766736648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323868714649035,0,0.683754184243182,0.191449731291012,0,0,0,0,0.095724865645506,0.095724865645506,0,0.850888092139864,0,0.6552148258534,0,0,0,0,0,0,0.291917246530216,0.191449731291012,0,0.72572880881507,0,0,0,0,0,0,0,0,0.0941061040779147,0,0,1.13804660674969,0,0,0,0,0,0,0.095724865645506,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0.815574699308565,0.425205803894747,0,0,0,0,0,0,0.323868714649035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34938164559978,0,0,0,0.0616145441506535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43984433288499,0,0,0,0,0,0.308327767592879,0,0,0.191449731291012,0.450834272210819,0,0.323868714649035,0,0,0,0,0,0.367478412259189,0.507313559908549,0,0.212406688426467,0.585861548327475,0,0,0.968946468215534,0.576338705570063,0,0,0,0,0,0,0,0,0,0.0343073680744806,0.388566857212213,0,0.734956824518378,0.0121999911091959,0,0,-0.0422874684771159,0,0.106321748745116,0.202753322768045,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0,0.332541227667185,0,0.161934357324517,-0.137338502423895,0.191449731291012,0,0,0.191449731291012,0.191449731291012,0,0,0,0,0,0,0,0.191449731291012,0,0,0,1.08206363286649,0,0,0.095724865645506,0,0,0.72038985621411,0.535502603985599,0,0.16518478205233,0.38005902590241,0,0,0.0902207420267522,0,0.0297679747946453,0,0.323868714649035,0,1.68844538343488,0.670863450635661,0,0,0.191449731291012,0.815574699308565,0,0,0,0.898730677465792,0.323868714649035,0,0.507313559908549,0,0.257659222970024,0.344119467239484,0,0,0,0,0.45045461374595,0.23783792431398,0,-0.378836254350424,0,0,-0.026613491942967,0,0,0,-0.0959594073735869

Revision as of 20:02, 10 August 2017

Name:CD14+ Monocytes, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10852
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stage47 years old adult
sexmale
age47
cell typemonocyte
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMon725
catalog number3H100-30-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005512
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10852 CAGE DRX008126 DRR008998
Accession ID Hg19

Library idBAMCTSS
CNhs10852 DRZ000423 DRZ001808
Accession ID Hg38

Library idBAMCTSS
CNhs10852 DRZ011773 DRZ013158
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10040downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.576
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0916
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.191
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.425
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.425
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.191
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0974
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.324
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.507
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.816
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.425
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.654
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.555
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.191
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0948
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.324
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.806
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.599
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.239
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.994
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.324
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.158
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.191
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.513
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.975
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.516
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.793
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.818
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.191
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.191
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.507
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.767
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.78
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.851
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.816
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.542
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.636
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.636
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature1.12
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.191
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.191
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.636
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.324
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.735
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.208
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.191
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10852

Jaspar motifP-value
MA0002.22.99369e-9
MA0003.10.825
MA0004.10.585
MA0006.10.676
MA0007.10.956
MA0009.10.205
MA0014.10.964
MA0017.10.553
MA0018.20.00752
MA0019.10.36
MA0024.10.0103
MA0025.13.85989e-4
MA0027.10.782
MA0028.10.0649
MA0029.10.135
MA0030.10.563
MA0031.10.588
MA0035.20.238
MA0038.10.85
MA0039.20.766
MA0040.10.566
MA0041.10.715
MA0042.10.801
MA0043.17.53342e-11
MA0046.10.00557
MA0047.20.897
MA0048.10.518
MA0050.11.39456e-7
MA0051.14.47201e-4
MA0052.10.00367
MA0055.10.312
MA0057.10.252
MA0058.10.445
MA0059.10.667
MA0060.12.8654e-7
MA0061.17.50286e-32
MA0062.20.103
MA0065.20.151
MA0066.10.0868
MA0067.11.11026e-6
MA0068.10.555
MA0069.10.705
MA0070.10.026
MA0071.10.276
MA0072.10.4
MA0073.10.303
MA0074.10.124
MA0076.10.168
MA0077.10.265
MA0078.10.606
MA0079.20.223
MA0080.22.15277e-12
MA0081.14.12756e-4
MA0083.10.704
MA0084.10.946
MA0087.10.945
MA0088.10.258
MA0090.10.319
MA0091.10.608
MA0092.10.426
MA0093.10.703
MA0099.21.21327e-46
MA0100.10.705
MA0101.13.04487e-31
MA0102.21.503e-10
MA0103.10.0114
MA0104.20.441
MA0105.14.18875e-30
MA0106.10.344
MA0107.11.61202e-37
MA0108.20.149
MA0111.10.681
MA0112.20.0048
MA0113.10.845
MA0114.10.782
MA0115.10.226
MA0116.10.00219
MA0117.10.0114
MA0119.10.351
MA0122.10.94
MA0124.10.553
MA0125.10.129
MA0131.10.777
MA0135.10.556
MA0136.11.84649e-13
MA0137.20.493
MA0138.20.017
MA0139.10.171
MA0140.10.176
MA0141.10.274
MA0142.10.917
MA0143.10.732
MA0144.10.246
MA0145.10.661
MA0146.10.762
MA0147.10.603
MA0148.10.571
MA0149.10.413
MA0150.11.62974e-20
MA0152.10.37
MA0153.10.00744
MA0154.11.92985e-4
MA0155.10.738
MA0156.13.47618e-10
MA0157.10.384
MA0159.10.0798
MA0160.10.117
MA0162.10.837
MA0163.15.70376e-5
MA0164.10.653
MA0258.10.0527
MA0259.10.685



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10852

Novel motifP-value
10.31
100.0233
1000.766
1010.946
1020.827
1030.603
1040.452
1050.0501
1060.00146
1070.322
1080.492
1090.476
110.445
1100.354
1110.13
1120.651
1130.176
1140.145
1150.0813
1160.798
1170.0989
1180.224
1190.512
120.241
1200.354
1210.629
1220.604
1230.0112
1240.861
1250.375
1260.263
1270.825
1280.11
1290.846
130.125
1300.33
1310.835
1320.0528
1330.595
1340.857
1350.679
1360.897
1370.0164
1380.34
1390.0711
140.363
1400.583
1410.464
1420.198
1430.0294
1440.607
1450.533
1460.954
1470.619
1480.069
1490.74
150.166
1500.548
1510.219
1520.345
1530.861
1540.545
1550.637
1560.64
1570.724
1580.0606
1590.122
160.803
1600.934
1610.823
1620.116
1630.13
1640.0859
1650.291
1660.7
1670.267
1680.0688
1690.109
170.395
180.253
190.969
20.278
200.278
210.903
220.485
230.0509
240.667
250.393
260.129
270.41
280.412
290.31
30.301
300.234
310.832
320.106
330.27
340.685
350.163
360.0666
370.155
380.41
390.769
40.754
400.176
410.00808
420.451
430.0276
440.278
450.921
460.408
470.984
480.844
490.11
50.244
500.979
510.537
520.464
530.235
540.596
550.93
560.934
570.897
580.242
590.599
60.955
600.086
610.51
620.169
630.655
640.591
650.273
660.0948
670.644
680.286
690.225
70.263
700.0969
710.0504
720.234
730.238
740.0289
750.264
760.0689
770.921
780.304
790.75
80.978
800.0832
810.368
820.335
830.163
840.0436
850.137
860.0545
870.57
880.833
890.887
90.428
900.292
910.259
920.42
930.621
940.0964
950.312
960.479
970.611
980.118
990.00815



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10852


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11224-116B9&oldid=4343636"