FF:10012-101C3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005144 | ||
|HumanCAGEScanFiles=NCig10014;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008626;DRR009498;DRZ000923;DRZ002308;DRZ012273;DRZ013658 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010012 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10012-101C3 | |id=FF:10012-101C3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010012 | ||
|is_obsolete= | |||
|library_id=CNhs10617 | |||
|library_id_phase_based=2:CNhs10617 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10012 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10012 | |||
|name=brain, adult, pool1 | |name=brain, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10014,,, | |profile_cagescan=NCig10014,,, | ||
|profile_hcage=CNhs10617,LSID656,release008,COMPLETED | |profile_hcage=CNhs10617,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -3 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -3 | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.05864812377812e-289!GO:0005737;cytoplasm;8.54777079006291e-162!GO:0044444;cytoplasmic part;2.52944941255435e-107!GO:0043226;organelle;1.29120359901031e-91!GO:0043229;intracellular organelle;4.21163670191857e-91!GO:0043227;membrane-bound organelle;2.13009926266318e-86!GO:0043231;intracellular membrane-bound organelle;3.40262707960153e-86!GO:0005515;protein binding;1.95940625471574e-72!GO:0044422;organelle part;6.41889303833206e-65!GO:0044446;intracellular organelle part;6.74587701909167e-64!GO:0032991;macromolecular complex;1.64142186930361e-63!GO:0016043;cellular component organization and biogenesis;1.18506525083597e-47!GO:0030529;ribonucleoprotein complex;2.46010836224681e-43!GO:0005739;mitochondrion;1.45367107988882e-42!GO:0033036;macromolecule localization;5.39865240938586e-40!GO:0015031;protein transport;1.75920134507325e-39!GO:0003723;RNA binding;3.33346097496622e-39!GO:0031090;organelle membrane;9.36774194282277e-38!GO:0008104;protein localization;6.27020981573927e-37!GO:0045184;establishment of protein localization;5.07132171429744e-36!GO:0043234;protein complex;1.28069136717291e-35!GO:0044429;mitochondrial part;7.8798711802619e-32!GO:0046907;intracellular transport;1.0096274955406e-30!GO:0043233;organelle lumen;2.59975482845209e-29!GO:0031974;membrane-enclosed lumen;2.59975482845209e-29!GO:0051649;establishment of cellular localization;4.08951351873201e-29!GO:0051641;cellular localization;4.30068490034418e-29!GO:0044428;nuclear part;6.57783723762772e-28!GO:0016192;vesicle-mediated transport;1.93132249106508e-27!GO:0031975;envelope;7.22381277983092e-27!GO:0031967;organelle envelope;9.33120823834943e-27!GO:0005829;cytosol;1.87320723756155e-26!GO:0005840;ribosome;2.61680732582484e-25!GO:0019538;protein metabolic process;4.09145189282916e-25!GO:0016071;mRNA metabolic process;9.01085219997292e-24!GO:0044238;primary metabolic process;7.15564989332978e-23!GO:0006886;intracellular protein transport;1.13690978028739e-22!GO:0008380;RNA splicing;3.04511348991571e-22!GO:0044260;cellular macromolecule metabolic process;7.71933567473178e-22!GO:0005740;mitochondrial envelope;8.62592258551866e-22!GO:0006396;RNA processing;1.04258556256258e-21!GO:0006119;oxidative phosphorylation;1.61117759327899e-21!GO:0044237;cellular metabolic process;1.69785688403149e-21!GO:0031966;mitochondrial membrane;2.44711973354196e-21!GO:0044267;cellular protein metabolic process;3.3375110744285e-21!GO:0031982;vesicle;5.17342087741164e-21!GO:0003735;structural constituent of ribosome;7.55830949870165e-21!GO:0006397;mRNA processing;2.40695978926406e-20!GO:0006412;translation;2.77309275065465e-20!GO:0031410;cytoplasmic vesicle;3.47458675930109e-20!GO:0043170;macromolecule metabolic process;3.93865116692189e-20!GO:0031988;membrane-bound vesicle;9.08918070710617e-20!GO:0006996;organelle organization and biogenesis;3.95125395109285e-19!GO:0016023;cytoplasmic membrane-bound vesicle;5.19077505080757e-19!GO:0005794;Golgi apparatus;5.48909091132173e-19!GO:0019866;organelle inner membrane;6.9362195613427e-19!GO:0065003;macromolecular complex assembly;8.56962611015139e-19!GO:0005743;mitochondrial inner membrane;1.90425502472092e-18!GO:0009058;biosynthetic process;1.93198830194373e-17!GO:0033279;ribosomal subunit;2.07297168135666e-17!GO:0005634;nucleus;5.51728672867476e-17!GO:0022607;cellular component assembly;1.37981124359547e-16!GO:0044455;mitochondrial membrane part;5.1844746853698e-16!GO:0031981;nuclear lumen;1.08911167129939e-15!GO:0005746;mitochondrial respiratory chain;1.9427817963277e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.63516231937314e-15!GO:0005681;spliceosome;3.83814402278321e-15!GO:0016462;pyrophosphatase activity;4.71990502828184e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.76694605506987e-15!GO:0000166;nucleotide binding;1.08767120935946e-14!GO:0009059;macromolecule biosynthetic process;1.13834805551128e-14!GO:0044249;cellular biosynthetic process;1.36287632059464e-14!GO:0048770;pigment granule;1.85396649262405e-14!GO:0042470;melanosome;1.85396649262405e-14!GO:0012505;endomembrane system;2.18758222635683e-14!GO:0017111;nucleoside-triphosphatase activity;3.63711987252316e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.85906770791572e-14!GO:0003954;NADH dehydrogenase activity;4.85906770791572e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.85906770791572e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.98233576220366e-14!GO:0006512;ubiquitin cycle;7.80885910793742e-14!GO:0045045;secretory pathway;1.4995224599924e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.45287025011201e-13!GO:0044445;cytosolic part;6.44050207842584e-13!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.08580983265951e-12!GO:0031980;mitochondrial lumen;1.31600204291932e-12!GO:0005759;mitochondrial matrix;1.31600204291932e-12!GO:0006457;protein folding;1.53838400889698e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.60994764253083e-12!GO:0045271;respiratory chain complex I;3.60994764253083e-12!GO:0005747;mitochondrial respiratory chain complex I;3.60994764253083e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.46482008328721e-12!GO:0042773;ATP synthesis coupled electron transport;5.46482008328721e-12!GO:0022618;protein-RNA complex assembly;6.8112735837135e-12!GO:0006810;transport;8.00887098817837e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.32692185618784e-12!GO:0007264;small GTPase mediated signal transduction;1.29882728216458e-11!GO:0048193;Golgi vesicle transport;1.83270902046787e-11!GO:0003924;GTPase activity;1.91626573642382e-11!GO:0043412;biopolymer modification;2.45070363655176e-11!GO:0016874;ligase activity;2.45070363655176e-11!GO:0032553;ribonucleotide binding;3.29118029126141e-11!GO:0032555;purine ribonucleotide binding;3.29118029126141e-11!GO:0030135;coated vesicle;4.0153089403219e-11!GO:0043687;post-translational protein modification;5.39719461782993e-11!GO:0006464;protein modification process;5.89998873677092e-11!GO:0019829;cation-transporting ATPase activity;9.81240379899401e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.14831192351587e-10!GO:0008135;translation factor activity, nucleic acid binding;1.16897603753431e-10!GO:0008092;cytoskeletal protein binding;1.31158094463596e-10!GO:0015935;small ribosomal subunit;1.56223185259588e-10!GO:0017076;purine nucleotide binding;2.33693556077376e-10!GO:0006605;protein targeting;2.85770866012353e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;3.07061716899614e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.87508254525346e-10!GO:0000502;proteasome complex (sensu Eukaryota);4.17923089981073e-10!GO:0043228;non-membrane-bound organelle;4.77266875292454e-10!GO:0043232;intracellular non-membrane-bound organelle;4.77266875292454e-10!GO:0019941;modification-dependent protein catabolic process;5.17349490824475e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.17349490824475e-10!GO:0043283;biopolymer metabolic process;5.63509126346364e-10!GO:0005783;endoplasmic reticulum;5.69144274842671e-10!GO:0051179;localization;6.29299030100062e-10!GO:0005768;endosome;6.34991366562258e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.42964105414261e-10!GO:0005525;GTP binding;6.62160477049105e-10!GO:0051082;unfolded protein binding;6.65909261431587e-10!GO:0044257;cellular protein catabolic process;7.00754937307654e-10!GO:0005654;nucleoplasm;1.01700255637353e-09!GO:0044265;cellular macromolecule catabolic process;1.59417961691877e-09!GO:0051234;establishment of localization;1.81611927073248e-09!GO:0032940;secretion by cell;3.35591786252866e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.35591786252866e-09!GO:0016044;membrane organization and biogenesis;3.45270217152175e-09!GO:0008134;transcription factor binding;3.63106759260877e-09!GO:0007399;nervous system development;4.60445406136241e-09!GO:0008565;protein transporter activity;5.75920034416069e-09!GO:0044431;Golgi apparatus part;5.91612206021096e-09!GO:0015986;ATP synthesis coupled proton transport;1.07314358070394e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.07314358070394e-08!GO:0043005;neuron projection;1.1106866658034e-08!GO:0006793;phosphorus metabolic process;1.16831171363702e-08!GO:0006796;phosphate metabolic process;1.16831171363702e-08!GO:0044451;nucleoplasm part;1.20448857634251e-08!GO:0051186;cofactor metabolic process;1.49766315437446e-08!GO:0007010;cytoskeleton organization and biogenesis;2.30210485716241e-08!GO:0030695;GTPase regulator activity;2.58085842631557e-08!GO:0043285;biopolymer catabolic process;2.59004588336996e-08!GO:0032561;guanyl ribonucleotide binding;2.75934276141822e-08!GO:0019001;guanyl nucleotide binding;2.75934276141822e-08!GO:0044248;cellular catabolic process;2.96257586886607e-08!GO:0030163;protein catabolic process;3.17532244800722e-08!GO:0003743;translation initiation factor activity;5.17349010460528e-08!GO:0006461;protein complex assembly;5.27843126386729e-08!GO:0005083;small GTPase regulator activity;5.32862474610883e-08!GO:0030136;clathrin-coated vesicle;7.25530271454747e-08!GO:0015934;large ribosomal subunit;7.81653449719442e-08!GO:0006413;translational initiation;8.83682520606322e-08!GO:0005761;mitochondrial ribosome;9.82893071786074e-08!GO:0000313;organellar ribosome;9.82893071786074e-08!GO:0010467;gene expression;1.01004024677705e-07!GO:0008639;small protein conjugating enzyme activity;1.20951120619561e-07!GO:0006446;regulation of translational initiation;1.38249973318572e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.49196777887582e-07!GO:0009057;macromolecule catabolic process;1.95291827847944e-07!GO:0046034;ATP metabolic process;1.97318143657955e-07!GO:0019717;synaptosome;2.07535749661256e-07!GO:0004842;ubiquitin-protein ligase activity;2.52927371029577e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.63964781305217e-07!GO:0000375;RNA splicing, via transesterification reactions;2.63964781305217e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.63964781305217e-07!GO:0019787;small conjugating protein ligase activity;2.71485907356178e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.04354789182157e-07!GO:0015631;tubulin binding;3.73341813818756e-07!GO:0009060;aerobic respiration;4.25653284803675e-07!GO:0006754;ATP biosynthetic process;4.57104253788392e-07!GO:0006753;nucleoside phosphate metabolic process;4.57104253788392e-07!GO:0045333;cellular respiration;4.84333732196669e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.182384255717e-07!GO:0009141;nucleoside triphosphate metabolic process;7.89741239803221e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.16410605103571e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.16410605103571e-07!GO:0016604;nuclear body;8.18336303887863e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.38762942277565e-07!GO:0006163;purine nucleotide metabolic process;8.38762942277565e-07!GO:0048471;perinuclear region of cytoplasm;8.97444734619579e-07!GO:0000139;Golgi membrane;9.97055225305426e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.12846765692903e-06!GO:0030029;actin filament-based process;1.21808007716643e-06!GO:0009150;purine ribonucleotide metabolic process;1.25691172689495e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.29464516254468e-06!GO:0016607;nuclear speck;1.35377057245948e-06!GO:0006913;nucleocytoplasmic transport;1.4407958910923e-06!GO:0006164;purine nucleotide biosynthetic process;1.44926739000541e-06!GO:0044440;endosomal part;1.79124284774954e-06!GO:0010008;endosome membrane;1.79124284774954e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.97971097273987e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.07626012349517e-06!GO:0016310;phosphorylation;2.12655306697207e-06!GO:0005905;coated pit;2.14622585948663e-06!GO:0009055;electron carrier activity;2.2013801067071e-06!GO:0051169;nuclear transport;2.21619488119052e-06!GO:0048475;coated membrane;2.36510066842376e-06!GO:0030117;membrane coat;2.36510066842376e-06!GO:0007242;intracellular signaling cascade;2.5906220996301e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.72495528409682e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.72495528409682e-06!GO:0006732;coenzyme metabolic process;2.72495528409682e-06!GO:0009259;ribonucleotide metabolic process;2.75549077570406e-06!GO:0008287;protein serine/threonine phosphatase complex;2.88081674351967e-06!GO:0031252;leading edge;2.90078754347769e-06!GO:0005730;nucleolus;3.72463786392841e-06!GO:0016881;acid-amino acid ligase activity;3.78181494306121e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.82520191914238e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.82520191914238e-06!GO:0005635;nuclear envelope;3.93670602705265e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.93670602705265e-06!GO:0019899;enzyme binding;4.24288468181973e-06!GO:0031965;nuclear membrane;4.35925820466318e-06!GO:0003779;actin binding;5.51713643055155e-06!GO:0006897;endocytosis;7.22761009823731e-06!GO:0010324;membrane invagination;7.22761009823731e-06!GO:0048523;negative regulation of cellular process;7.72935377910669e-06!GO:0044432;endoplasmic reticulum part;8.13151478203866e-06!GO:0009260;ribonucleotide biosynthetic process;8.17142680680166e-06!GO:0032559;adenyl ribonucleotide binding;9.37333566774045e-06!GO:0006099;tricarboxylic acid cycle;9.37333566774045e-06!GO:0046356;acetyl-CoA catabolic process;9.37333566774045e-06!GO:0005770;late endosome;9.41506197660465e-06!GO:0045259;proton-transporting ATP synthase complex;9.46280035719172e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02790825288564e-05!GO:0015630;microtubule cytoskeleton;1.11154064530711e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.50472252704953e-05!GO:0005769;early endosome;1.95283278309697e-05!GO:0009109;coenzyme catabolic process;2.34669182267933e-05!GO:0005524;ATP binding;2.34669182267933e-05!GO:0030425;dendrite;2.39750617371007e-05!GO:0042623;ATPase activity, coupled;2.66653185789431e-05!GO:0005798;Golgi-associated vesicle;2.8075488555511e-05!GO:0017038;protein import;2.88063371884919e-05!GO:0007265;Ras protein signal transduction;2.91417008456194e-05!GO:0051246;regulation of protein metabolic process;3.40431650751341e-05!GO:0006084;acetyl-CoA metabolic process;3.66270938797127e-05!GO:0003712;transcription cofactor activity;3.88411307140245e-05!GO:0016887;ATPase activity;4.02921966100688e-05!GO:0030554;adenyl nucleotide binding;4.42344912845076e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.50057997297099e-05!GO:0051187;cofactor catabolic process;4.58905364319098e-05!GO:0030120;vesicle coat;4.94574555187056e-05!GO:0030662;coated vesicle membrane;4.94574555187056e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.03928851920152e-05!GO:0008654;phospholipid biosynthetic process;6.02531217656571e-05!GO:0005789;endoplasmic reticulum membrane;6.02531217656571e-05!GO:0032446;protein modification by small protein conjugation;6.3465092265685e-05!GO:0005874;microtubule;7.34941526990223e-05!GO:0009056;catabolic process;7.39729470499371e-05!GO:0005773;vacuole;7.62966345330798e-05!GO:0008021;synaptic vesicle;7.94049323427794e-05!GO:0000902;cell morphogenesis;8.25579656828835e-05!GO:0032989;cellular structure morphogenesis;8.25579656828835e-05!GO:0006613;cotranslational protein targeting to membrane;9.5535948852582e-05!GO:0048519;negative regulation of biological process;9.76044075383853e-05!GO:0016567;protein ubiquitination;0.000101127522575191!GO:0008017;microtubule binding;0.00010569099601304!GO:0030133;transport vesicle;0.000110141017639769!GO:0008047;enzyme activator activity;0.000112388454457446!GO:0048489;synaptic vesicle transport;0.000120459408056747!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000136250585402991!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000145358817446372!GO:0000245;spliceosome assembly;0.000147675261837626!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000152466258293026!GO:0015399;primary active transmembrane transporter activity;0.000152466258293026!GO:0046467;membrane lipid biosynthetic process;0.000165678648547717!GO:0005793;ER-Golgi intermediate compartment;0.000187829563241608!GO:0006650;glycerophospholipid metabolic process;0.000250472127947813!GO:0005741;mitochondrial outer membrane;0.000256512141754642!GO:0019226;transmission of nerve impulse;0.000271204190069543!GO:0030027;lamellipodium;0.000277814197003103!GO:0006888;ER to Golgi vesicle-mediated transport;0.000300891186610525!GO:0045055;regulated secretory pathway;0.000325217815090106!GO:0044453;nuclear membrane part;0.000332677334107455!GO:0043566;structure-specific DNA binding;0.000346913633915923!GO:0003729;mRNA binding;0.000350901677109858!GO:0016564;transcription repressor activity;0.000363019397949246!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000397076499129777!GO:0043492;ATPase activity, coupled to movement of substances;0.000405058883199535!GO:0005096;GTPase activator activity;0.000406573706736825!GO:0031968;organelle outer membrane;0.000421189213361553!GO:0019867;outer membrane;0.000448683717664292!GO:0006752;group transfer coenzyme metabolic process;0.000449825315028305!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000458106945604698!GO:0005643;nuclear pore;0.000491206381490032!GO:0051188;cofactor biosynthetic process;0.000498490872178621!GO:0006323;DNA packaging;0.000498490872178621!GO:0006403;RNA localization;0.000501423986013486!GO:0051056;regulation of small GTPase mediated signal transduction;0.000520115254473208!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000536710789631271!GO:0050657;nucleic acid transport;0.000583979956308621!GO:0051236;establishment of RNA localization;0.000583979956308621!GO:0050658;RNA transport;0.000583979956308621!GO:0007269;neurotransmitter secretion;0.000588932983897366!GO:0000159;protein phosphatase type 2A complex;0.000628624579068567!GO:0000323;lytic vacuole;0.000646339871573431!GO:0005764;lysosome;0.000646339871573431!GO:0003697;single-stranded DNA binding;0.000657851773870066!GO:0000151;ubiquitin ligase complex;0.000726606122903417!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000737936733713709!GO:0008219;cell death;0.000745548970179415!GO:0016265;death;0.000745548970179415!GO:0030118;clathrin coat;0.000749009492315031!GO:0008601;protein phosphatase type 2A regulator activity;0.00077401273805697!GO:0015980;energy derivation by oxidation of organic compounds;0.000813144713804504!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000823265308220127!GO:0019208;phosphatase regulator activity;0.000865752642609628!GO:0007019;microtubule depolymerization;0.000879287963477346!GO:0016197;endosome transport;0.000921371014716761!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107408773345663!GO:0005839;proteasome core complex (sensu Eukaryota);0.00117361632043602!GO:0003714;transcription corepressor activity;0.00125724722479521!GO:0006643;membrane lipid metabolic process;0.00128618325110355!GO:0006606;protein import into nucleus;0.00129765587264253!GO:0051170;nuclear import;0.00134269395510617!GO:0045786;negative regulation of progression through cell cycle;0.00143221283771575!GO:0030384;phosphoinositide metabolic process;0.00143404971258278!GO:0031072;heat shock protein binding;0.00147485983389992!GO:0012501;programmed cell death;0.00151389718654061!GO:0008154;actin polymerization and/or depolymerization;0.00152594464459225!GO:0019902;phosphatase binding;0.00152594464459225!GO:0006915;apoptosis;0.00159303921894721!GO:0030427;site of polarized growth;0.00159303921894721!GO:0009966;regulation of signal transduction;0.00165310717274608!GO:0030532;small nuclear ribonucleoprotein complex;0.00167919312502457!GO:0005516;calmodulin binding;0.00171381394004799!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0017455008582248!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00177876297121181!GO:0051087;chaperone binding;0.00178658333653207!GO:0030426;growth cone;0.00179201636420606!GO:0043623;cellular protein complex assembly;0.00184335196559375!GO:0016568;chromatin modification;0.00184697161951076!GO:0003724;RNA helicase activity;0.00185895556823321!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0019249908095265!GO:0016311;dephosphorylation;0.00195240948407204!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00216375975415674!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00216375975415674!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00216375975415674!GO:0050767;regulation of neurogenesis;0.00216999397892246!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00218522531654266!GO:0022406;membrane docking;0.00221529895050524!GO:0048278;vesicle docking;0.00221529895050524!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00224762592453401!GO:0004667;prostaglandin-D synthase activity;0.00224762592453401!GO:0050802;circadian sleep/wake cycle, sleep;0.00224762592453401!GO:0022410;circadian sleep/wake cycle process;0.00224762592453401!GO:0042749;regulation of circadian sleep/wake cycle;0.00224762592453401!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00224762592453401!GO:0004721;phosphoprotein phosphatase activity;0.00232447088048186!GO:0008026;ATP-dependent helicase activity;0.00237726640323383!GO:0048487;beta-tubulin binding;0.00240540333702462!GO:0043069;negative regulation of programmed cell death;0.00241833705323694!GO:0001505;regulation of neurotransmitter levels;0.00244281169477963!GO:0016050;vesicle organization and biogenesis;0.00245988737640599!GO:0019888;protein phosphatase regulator activity;0.00249674632344917!GO:0006612;protein targeting to membrane;0.00251624288845431!GO:0006904;vesicle docking during exocytosis;0.00251624288845431!GO:0005869;dynactin complex;0.00253698236187708!GO:0006916;anti-apoptosis;0.00254101833525321!GO:0031902;late endosome membrane;0.00273498814247534!GO:0043066;negative regulation of apoptosis;0.00273498814247534!GO:0005938;cell cortex;0.00276794349574218!GO:0006259;DNA metabolic process;0.00284282754054008!GO:0031114;regulation of microtubule depolymerization;0.00292996300061372!GO:0007026;negative regulation of microtubule depolymerization;0.00292996300061372!GO:0006892;post-Golgi vesicle-mediated transport;0.0030015747932663!GO:0016791;phosphoric monoester hydrolase activity;0.00321344555997847!GO:0007266;Rho protein signal transduction;0.00324382212353917!GO:0048468;cell development;0.00327434919094033!GO:0043021;ribonucleoprotein binding;0.00328271160418336!GO:0006607;NLS-bearing substrate import into nucleus;0.00328405646595282!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00328405646595282!GO:0009108;coenzyme biosynthetic process;0.00330535246785938!GO:0012506;vesicle membrane;0.00355940600196441!GO:0042254;ribosome biogenesis and assembly;0.00355940600196441!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00356371366081991!GO:0048167;regulation of synaptic plasticity;0.00356371366081991!GO:0006333;chromatin assembly or disassembly;0.00361186307021401!GO:0031901;early endosome membrane;0.00364342330098171!GO:0005048;signal sequence binding;0.00368871900776977!GO:0005085;guanyl-nucleotide exchange factor activity;0.00372510027784114!GO:0016126;sterol biosynthetic process;0.00378699880980912!GO:0008361;regulation of cell size;0.00380359181413105!GO:0006470;protein amino acid dephosphorylation;0.00391173753483244!GO:0043209;myelin sheath;0.00401613667098423!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00403711831574626!GO:0004812;aminoacyl-tRNA ligase activity;0.00403711831574626!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00403711831574626!GO:0000314;organellar small ribosomal subunit;0.0040976976027817!GO:0005763;mitochondrial small ribosomal subunit;0.0040976976027817!GO:0005875;microtubule associated complex;0.00420609781789604!GO:0009117;nucleotide metabolic process;0.00428487236963425!GO:0046488;phosphatidylinositol metabolic process;0.00430762241392678!GO:0004722;protein serine/threonine phosphatase activity;0.00430762241392678!GO:0046578;regulation of Ras protein signal transduction;0.00431656487029971!GO:0046474;glycerophospholipid biosynthetic process;0.00459074383365959!GO:0030867;rough endoplasmic reticulum membrane;0.00470087054029777!GO:0004298;threonine endopeptidase activity;0.00485253479268974!GO:0005774;vacuolar membrane;0.00511347384990967!GO:0016301;kinase activity;0.00519030936381997!GO:0004386;helicase activity;0.00533002691102651!GO:0005791;rough endoplasmic reticulum;0.00541661540204127!GO:0006891;intra-Golgi vesicle-mediated transport;0.00581474094757291!GO:0048500;signal recognition particle;0.00628608392726377!GO:0007268;synaptic transmission;0.00628608392726377!GO:0043038;amino acid activation;0.00628608392726377!GO:0006418;tRNA aminoacylation for protein translation;0.00628608392726377!GO:0043039;tRNA aminoacylation;0.00628608392726377!GO:0050803;regulation of synapse structure and activity;0.006303829796057!GO:0051028;mRNA transport;0.00639722971945753!GO:0019887;protein kinase regulator activity;0.00647798911530871!GO:0006414;translational elongation;0.00649001599437728!GO:0008610;lipid biosynthetic process;0.0065264508148569!GO:0016049;cell growth;0.00669804082343151!GO:0065002;intracellular protein transport across a membrane;0.0067284468556633!GO:0051261;protein depolymerization;0.00673858283384908!GO:0030041;actin filament polymerization;0.00683361470248941!GO:0001726;ruffle;0.00696882790601007!GO:0007272;ensheathment of neurons;0.00702092889286283!GO:0008366;axon ensheathment;0.00702092889286283!GO:0050839;cell adhesion molecule binding;0.00731532288679477!GO:0051427;hormone receptor binding;0.00739369503814937!GO:0051920;peroxiredoxin activity;0.00755400567939876!GO:0009892;negative regulation of metabolic process;0.00760887087593195!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00760887087593195!GO:0030424;axon;0.00778444906095623!GO:0006366;transcription from RNA polymerase II promoter;0.00799155012212541!GO:0050811;GABA receptor binding;0.00816918113237636!GO:0044433;cytoplasmic vesicle part;0.00850591553724261!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00882508418335873!GO:0055083;monovalent inorganic anion homeostasis;0.00882508418335873!GO:0055064;chloride ion homeostasis;0.00882508418335873!GO:0030644;cellular chloride ion homeostasis;0.00882508418335873!GO:0044448;cell cortex part;0.00890468686950079!GO:0003713;transcription coactivator activity;0.00898255246077855!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00907747422211759!GO:0008180;signalosome;0.00935634283646583!GO:0006644;phospholipid metabolic process;0.00942933903702733!GO:0030660;Golgi-associated vesicle membrane;0.0101894002017416!GO:0019903;protein phosphatase binding;0.0104083318389642!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0105292693398963!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0105292693398963!GO:0003746;translation elongation factor activity;0.0108324513580319!GO:0048699;generation of neurons;0.0110043888858355!GO:0008139;nuclear localization sequence binding;0.0111251155593068!GO:0019904;protein domain specific binding;0.0114061418181694!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0114061418181694!GO:0033673;negative regulation of kinase activity;0.0114148676608435!GO:0006469;negative regulation of protein kinase activity;0.0114148676608435!GO:0005092;GDP-dissociation inhibitor activity;0.0117714708375877!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0118629577251284!GO:0035035;histone acetyltransferase binding;0.0119419075053589!GO:0022008;neurogenesis;0.0119728945239161!GO:0008186;RNA-dependent ATPase activity;0.0120760150609643!GO:0006887;exocytosis;0.0122899474838798!GO:0035257;nuclear hormone receptor binding;0.012426242449304!GO:0007017;microtubule-based process;0.0124982115973587!GO:0005765;lysosomal membrane;0.0129145177987753!GO:0051168;nuclear export;0.0129145177987753!GO:0001508;regulation of action potential;0.012977732897947!GO:0030742;GTP-dependent protein binding;0.0131802961884777!GO:0004674;protein serine/threonine kinase activity;0.0136214979711826!GO:0032011;ARF protein signal transduction;0.0137377299038288!GO:0032012;regulation of ARF protein signal transduction;0.0137377299038288!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0137377299038288!GO:0045047;protein targeting to ER;0.0137377299038288!GO:0008286;insulin receptor signaling pathway;0.0140075739701167!GO:0030658;transport vesicle membrane;0.0148598720404165!GO:0006402;mRNA catabolic process;0.0148946788214107!GO:0008250;oligosaccharyl transferase complex;0.0151628850427079!GO:0006665;sphingolipid metabolic process;0.0153129519888811!GO:0043681;protein import into mitochondrion;0.0157689820388493!GO:0030137;COPI-coated vesicle;0.0158191889287099!GO:0005885;Arp2/3 protein complex;0.0162190417724296!GO:0006695;cholesterol biosynthetic process;0.0163706343829436!GO:0001578;microtubule bundle formation;0.0163706343829436!GO:0030132;clathrin coat of coated pit;0.0163706343829436!GO:0046930;pore complex;0.0170465306758505!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0171608855311868!GO:0005762;mitochondrial large ribosomal subunit;0.0176912583948342!GO:0000315;organellar large ribosomal subunit;0.0176912583948342!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0177776242410229!GO:0044437;vacuolar part;0.017809591185714!GO:0030258;lipid modification;0.0179526972616277!GO:0001558;regulation of cell growth;0.0180808128322561!GO:0019207;kinase regulator activity;0.0183060762719853!GO:0051540;metal cluster binding;0.018530272269983!GO:0051536;iron-sulfur cluster binding;0.018530272269983!GO:0007243;protein kinase cascade;0.0189210162896817!GO:0046489;phosphoinositide biosynthetic process;0.0194784286804014!GO:0009165;nucleotide biosynthetic process;0.019608372965688!GO:0015629;actin cytoskeleton;0.0197817767936848!GO:0051348;negative regulation of transferase activity;0.0198818309967639!GO:0008312;7S RNA binding;0.0200831212870984!GO:0031109;microtubule polymerization or depolymerization;0.0201373487233598!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0201928306580529!GO:0030054;cell junction;0.020202166172231!GO:0051276;chromosome organization and biogenesis;0.020642174462953!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.020642174462953!GO:0045296;cadherin binding;0.0210783764119826!GO:0031124;mRNA 3'-end processing;0.0213109762148045!GO:0030182;neuron differentiation;0.0215108443574706!GO:0006818;hydrogen transport;0.0217142682122674!GO:0030659;cytoplasmic vesicle membrane;0.0223848326409547!GO:0000062;acyl-CoA binding;0.0229215051964272!GO:0006661;phosphatidylinositol biosynthetic process;0.0235380472986667!GO:0016740;transferase activity;0.0238107856084448!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0238898479970597!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.024074872679219!GO:0019198;transmembrane receptor protein phosphatase activity;0.024074872679219!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0247291695041035!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0252002647238784!GO:0005868;cytoplasmic dynein complex;0.0255903756556696!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.027046517828518!GO:0031371;ubiquitin conjugating enzyme complex;0.0273848158329082!GO:0004004;ATP-dependent RNA helicase activity;0.0275302983162518!GO:0006672;ceramide metabolic process;0.0281486777879101!GO:0006376;mRNA splice site selection;0.028311669670658!GO:0000389;nuclear mRNA 3'-splice site recognition;0.028311669670658!GO:0030125;clathrin vesicle coat;0.0287973156909749!GO:0030665;clathrin coated vesicle membrane;0.0287973156909749!GO:0015992;proton transport;0.0289055051603775!GO:0005099;Ras GTPase activator activity;0.0295146614635265!GO:0016579;protein deubiquitination;0.0297124304999173!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0297312537584484!GO:0003690;double-stranded DNA binding;0.0308581806638261!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.030921019859811!GO:0033043;regulation of organelle organization and biogenesis;0.030921019859811!GO:0007005;mitochondrion organization and biogenesis;0.0314518694177254!GO:0016859;cis-trans isomerase activity;0.0315144128499406!GO:0005813;centrosome;0.0316715622571521!GO:0019894;kinesin binding;0.0318810768793224!GO:0007034;vacuolar transport;0.032044456877575!GO:0008088;axon cargo transport;0.0320717797740522!GO:0019911;structural constituent of myelin sheath;0.032440619982333!GO:0042802;identical protein binding;0.0329148067483708!GO:0005100;Rho GTPase activator activity;0.0342745062901768!GO:0043087;regulation of GTPase activity;0.0342973144540274!GO:0001666;response to hypoxia;0.0344785277454328!GO:0043488;regulation of mRNA stability;0.0350517467045668!GO:0043487;regulation of RNA stability;0.0350517467045668!GO:0004576;oligosaccharyl transferase activity;0.0354784036540819!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0354784036540819!GO:0006364;rRNA processing;0.035830593327825!GO:0050789;regulation of biological process;0.0362418848143721!GO:0030030;cell projection organization and biogenesis;0.0365331360777854!GO:0048858;cell projection morphogenesis;0.0365331360777854!GO:0032990;cell part morphogenesis;0.0365331360777854!GO:0016481;negative regulation of transcription;0.0365741934708378!GO:0031324;negative regulation of cellular metabolic process;0.0368713860239196!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0371314702232069!GO:0046519;sphingoid metabolic process;0.0371314702232069!GO:0042578;phosphoric ester hydrolase activity;0.0378112198076321!GO:0030880;RNA polymerase complex;0.0384458763697594!GO:0019843;rRNA binding;0.0387311444996128!GO:0016363;nuclear matrix;0.0392930544208439!GO:0051252;regulation of RNA metabolic process;0.0396718701863709!GO:0051287;NAD binding;0.0401160947560366!GO:0007050;cell cycle arrest;0.0406216918716458!GO:0004683;calmodulin-dependent protein kinase activity;0.0410577671747478!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0410577671747478!GO:0015002;heme-copper terminal oxidase activity;0.0410577671747478!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0410577671747478!GO:0004129;cytochrome-c oxidase activity;0.0410577671747478!GO:0043086;negative regulation of catalytic activity;0.0416002981386547!GO:0000059;protein import into nucleus, docking;0.041833998615806!GO:0003725;double-stranded RNA binding;0.0418627230684281!GO:0003711;transcription elongation regulator activity;0.0426868776304389!GO:0051789;response to protein stimulus;0.0429661817075705!GO:0006986;response to unfolded protein;0.0429661817075705!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0438882446900111!GO:0042552;myelination;0.0440225901260975!GO:0006611;protein export from nucleus;0.0440846990097103!GO:0000209;protein polyubiquitination;0.0451862975543123!GO:0035258;steroid hormone receptor binding;0.0453674012670152!GO:0042026;protein refolding;0.0460436981377993!GO:0042995;cell projection;0.0460436981377993!GO:0016584;nucleosome positioning;0.0460436981377993!GO:0051726;regulation of cell cycle;0.0463207380942027!GO:0065009;regulation of a molecular function;0.0463969622981698!GO:0030663;COPI coated vesicle membrane;0.0471404930242925!GO:0030126;COPI vesicle coat;0.0471404930242925!GO:0007006;mitochondrial membrane organization and biogenesis;0.0471404930242925!GO:0019783;small conjugating protein-specific protease activity;0.0472181929385643!GO:0030911;TPR domain binding;0.0476656845685801!GO:0008022;protein C-terminus binding;0.0483530296811338!GO:0016072;rRNA metabolic process;0.0494315517184378!GO:0006378;mRNA polyadenylation;0.0494518725361352!GO:0004860;protein kinase inhibitor activity;0.0495289923844438 | |||
|sample_id=10012 | |sample_id=10012 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=REST:4.00392141867;NHLH1,2:3.95683627154;MYFfamily:3.82661671215;ZBTB6:3.47605095004;EGR1..3:3.24464451216;ZFP161:3.19104573424;MTE{core}:3.15335538435;MTF1:3.10417464621;PRRX1,2:3.05421372278;SOX5:3.02441606329;AHR_ARNT_ARNT2:2.98717274392;MED-1{core}:2.94215710474;PAX5:2.91403965885;ATF2:2.87387844209;FOXM1:2.86001905783;CUX2:2.82138457679;GTF2I:2.74800107464;HOXA9_MEIS1:2.70777734688;PAX6:2.66751675057;NKX3-2:2.66428500828;RREB1:2.66177858971;TFAP2B:2.64577350262;SOX2:2.62915978013;NFIX:2.58737745245;PRDM1:2.5547762487;RFX1:2.54544671392;HIC1:2.50045508956;MZF1:2.43508292521;DBP:2.39380293016;OCT4_SOX2{dimer}:2.37467816753;SMAD1..7,9:2.23748355146;MAFB:2.22267186511;PATZ1:2.21768817832;RFX2..5_RFXANK_RFXAP:2.16593907968;SOX{8,9,10}:2.14696612518;JUN:2.12399869755;MAZ:2.11562586773;GATA4:2.11334137302;KLF4:2.091464024;POU5F1:2.06705030131;SOX17:2.04704070061;LMO2:2.03826251136;ARID5B:1.91970427688;EBF1:1.89269513247;GFI1B:1.87121109402;HBP1_HMGB_SSRP1_UBTF:1.85613599229;BREu{core}:1.78971516324;XBP1:1.76262450522;FOXQ1:1.69121066317;TFDP1:1.69079792543;GCM1,2:1.66750135046;POU6F1:1.63300795526;ZNF423:1.60435679984;TGIF1:1.58091769395;CDC5L:1.56979117874;EP300:1.56738083503;ESRRA:1.5509928175;RBPJ:1.37681835282;NRF1:1.36454433408;LEF1_TCF7_TCF7L1,2:1.32696062195;NKX2-3_NKX2-5:1.30678228403;HOX{A4,D4}:1.26176472627;FOX{F1,F2,J1}:1.25729238265;FOXP3:1.21536121253;NFIL3:1.16789720827;POU3F1..4:1.1482447968;T:1.08499986787;GTF2A1,2:1.04690138114;HMGA1,2:1.04508301755;MYOD1:1.03173596465;NANOG:0.98221659772;ZNF384:0.980598565336;STAT1,3:0.954378926914;ZNF238:0.946022334586;CRX:0.928657435639;RORA:0.863502597801;AR:0.851218253105;SPZ1:0.842898435769;HAND1,2:0.828537803525;SP1:0.828060423963;SREBF1,2:0.805555756236;ZEB1:0.799903287086;ZIC1..3:0.797585411995;TFAP2{A,C}:0.78273720096;FOXD3:0.772034382914;NKX6-1,2:0.755727092173;BPTF:0.734603835679;YY1:0.698307496319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.68200314601;MYBL2:0.667170331882;IKZF2:0.66561908564;TLX1..3_NFIC{dimer}:0.645376576579;HMX1:0.616873038274;MEF2{A,B,C,D}:0.608085296525;TLX2:0.59819234902;GZF1:0.596289102607;ZNF143:0.578668837377;NR3C1:0.562006080724;ONECUT1,2:0.516187688967;TBX4,5:0.511021587046;STAT2,4,6:0.475641302522;TEF:0.468335855432;UFEwm:0.451994432396;FOX{D1,D2}:0.444944123428;FOXL1:0.41713751873;GFI1:0.388175797535;CREB1:0.337307612856;ADNP_IRX_SIX_ZHX:0.32533727748;ATF4:0.315352396936;bHLH_family:0.296781813763;PAX4:0.231193549416;IKZF1:0.230455429543;PAX1,9:0.228957277693;PBX1:0.18551043156;NFE2L1:0.140024910098;ALX1:0.126973747371;NANOG{mouse}:0.11515638811;IRF7:0.103692876174;XCPE1{core}:0.0999307093813;ATF5_CREB3:0.0896131878642;FOXN1:0.0676795618661;TFAP4:0.065897459847;HOX{A6,A7,B6,B7}:0.0522136441464;NFE2L2:-0.016260817694;NR1H4:-0.0462701739943;PAX2:-0.0657095561818;ZNF148:-0.06803335277;FOX{I1,J2}:-0.0821133793887;NFY{A,B,C}:-0.0915162228568;PDX1:-0.0950743779937;SNAI1..3:-0.0996608396817;NFATC1..3:-0.172372169082;VSX1,2:-0.174306318706;FOXP1:-0.192250284195;NR5A1,2:-0.224374060842;IRF1,2:-0.238323367691;FOXO1,3,4:-0.309527155323;ESR1:-0.316848371501;DMAP1_NCOR{1,2}_SMARC:-0.373492690869;FOXA2:-0.385744123452;HSF1,2:-0.388879617001;SPI1:-0.39336946299;LHX3,4:-0.401833576899;TFCP2:-0.402581403837;NFE2:-0.403811068505;NKX2-2,8:-0.412014129511;CEBPA,B_DDIT3:-0.441032868989;ATF6:-0.558684742989;SPIB:-0.627764888895;ETS1,2:-0.685165550041;PAX3,7:-0.719186677792;GATA6:-0.731371239131;HNF1A:-0.732203880232;TOPORS:-0.746439269954;TAL1_TCF{3,4,12}:-0.763812197577;TBP:-0.770270069061;TP53:-0.770350750705;POU1F1:-0.777425705525;FOSL2:-0.806499079609;HNF4A_NR2F1,2:-0.828453791748;RXR{A,B,G}:-0.890259120154;PAX8:-0.899739312895;BACH2:-0.930607713076;RUNX1..3:-0.946964625239;FOS_FOS{B,L1}_JUN{B,D}:-1.00887828207;GLI1..3:-1.01395059182;EVI1:-1.04654552829;TEAD1:-1.05647049849;ALX4:-1.07090508143;E2F1..5:-1.15108443157;ZBTB16:-1.18938980068;NFKB1_REL_RELA:-1.19032506545;NKX3-1:-1.20047918226;SRF:-1.28117795882;CDX1,2,4:-1.28224875445;POU2F1..3:-1.2882434316;HLF:-1.29532150501;HIF1A:-1.32278376032;MYB:-1.36781835619;RXRA_VDR{dimer}:-1.38282951087;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40340395981;ELK1,4_GABP{A,B1}:-1.40364703634;NR6A1:-1.52911217582;STAT5{A,B}:-1.53487219856;NKX2-1,4:-1.53623903372;ELF1,2,4:-1.58497440119;PPARG:-1.65161613442;HES1:-1.67703586126;EN1,2:-1.72388557049;PITX1..3:-1.94841013439;AIRE:-2.01257721933;HOX{A5,B5}:-2.79274975738 | |top_motifs=REST:4.00392141867;NHLH1,2:3.95683627154;MYFfamily:3.82661671215;ZBTB6:3.47605095004;EGR1..3:3.24464451216;ZFP161:3.19104573424;MTE{core}:3.15335538435;MTF1:3.10417464621;PRRX1,2:3.05421372278;SOX5:3.02441606329;AHR_ARNT_ARNT2:2.98717274392;MED-1{core}:2.94215710474;PAX5:2.91403965885;ATF2:2.87387844209;FOXM1:2.86001905783;CUX2:2.82138457679;GTF2I:2.74800107464;HOXA9_MEIS1:2.70777734688;PAX6:2.66751675057;NKX3-2:2.66428500828;RREB1:2.66177858971;TFAP2B:2.64577350262;SOX2:2.62915978013;NFIX:2.58737745245;PRDM1:2.5547762487;RFX1:2.54544671392;HIC1:2.50045508956;MZF1:2.43508292521;DBP:2.39380293016;OCT4_SOX2{dimer}:2.37467816753;SMAD1..7,9:2.23748355146;MAFB:2.22267186511;PATZ1:2.21768817832;RFX2..5_RFXANK_RFXAP:2.16593907968;SOX{8,9,10}:2.14696612518;JUN:2.12399869755;MAZ:2.11562586773;GATA4:2.11334137302;KLF4:2.091464024;POU5F1:2.06705030131;SOX17:2.04704070061;LMO2:2.03826251136;ARID5B:1.91970427688;EBF1:1.89269513247;GFI1B:1.87121109402;HBP1_HMGB_SSRP1_UBTF:1.85613599229;BREu{core}:1.78971516324;XBP1:1.76262450522;FOXQ1:1.69121066317;TFDP1:1.69079792543;GCM1,2:1.66750135046;POU6F1:1.63300795526;ZNF423:1.60435679984;TGIF1:1.58091769395;CDC5L:1.56979117874;EP300:1.56738083503;ESRRA:1.5509928175;RBPJ:1.37681835282;NRF1:1.36454433408;LEF1_TCF7_TCF7L1,2:1.32696062195;NKX2-3_NKX2-5:1.30678228403;HOX{A4,D4}:1.26176472627;FOX{F1,F2,J1}:1.25729238265;FOXP3:1.21536121253;NFIL3:1.16789720827;POU3F1..4:1.1482447968;T:1.08499986787;GTF2A1,2:1.04690138114;HMGA1,2:1.04508301755;MYOD1:1.03173596465;NANOG:0.98221659772;ZNF384:0.980598565336;STAT1,3:0.954378926914;ZNF238:0.946022334586;CRX:0.928657435639;RORA:0.863502597801;AR:0.851218253105;SPZ1:0.842898435769;HAND1,2:0.828537803525;SP1:0.828060423963;SREBF1,2:0.805555756236;ZEB1:0.799903287086;ZIC1..3:0.797585411995;TFAP2{A,C}:0.78273720096;FOXD3:0.772034382914;NKX6-1,2:0.755727092173;BPTF:0.734603835679;YY1:0.698307496319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.68200314601;MYBL2:0.667170331882;IKZF2:0.66561908564;TLX1..3_NFIC{dimer}:0.645376576579;HMX1:0.616873038274;MEF2{A,B,C,D}:0.608085296525;TLX2:0.59819234902;GZF1:0.596289102607;ZNF143:0.578668837377;NR3C1:0.562006080724;ONECUT1,2:0.516187688967;TBX4,5:0.511021587046;STAT2,4,6:0.475641302522;TEF:0.468335855432;UFEwm:0.451994432396;FOX{D1,D2}:0.444944123428;FOXL1:0.41713751873;GFI1:0.388175797535;CREB1:0.337307612856;ADNP_IRX_SIX_ZHX:0.32533727748;ATF4:0.315352396936;bHLH_family:0.296781813763;PAX4:0.231193549416;IKZF1:0.230455429543;PAX1,9:0.228957277693;PBX1:0.18551043156;NFE2L1:0.140024910098;ALX1:0.126973747371;NANOG{mouse}:0.11515638811;IRF7:0.103692876174;XCPE1{core}:0.0999307093813;ATF5_CREB3:0.0896131878642;FOXN1:0.0676795618661;TFAP4:0.065897459847;HOX{A6,A7,B6,B7}:0.0522136441464;NFE2L2:-0.016260817694;NR1H4:-0.0462701739943;PAX2:-0.0657095561818;ZNF148:-0.06803335277;FOX{I1,J2}:-0.0821133793887;NFY{A,B,C}:-0.0915162228568;PDX1:-0.0950743779937;SNAI1..3:-0.0996608396817;NFATC1..3:-0.172372169082;VSX1,2:-0.174306318706;FOXP1:-0.192250284195;NR5A1,2:-0.224374060842;IRF1,2:-0.238323367691;FOXO1,3,4:-0.309527155323;ESR1:-0.316848371501;DMAP1_NCOR{1,2}_SMARC:-0.373492690869;FOXA2:-0.385744123452;HSF1,2:-0.388879617001;SPI1:-0.39336946299;LHX3,4:-0.401833576899;TFCP2:-0.402581403837;NFE2:-0.403811068505;NKX2-2,8:-0.412014129511;CEBPA,B_DDIT3:-0.441032868989;ATF6:-0.558684742989;SPIB:-0.627764888895;ETS1,2:-0.685165550041;PAX3,7:-0.719186677792;GATA6:-0.731371239131;HNF1A:-0.732203880232;TOPORS:-0.746439269954;TAL1_TCF{3,4,12}:-0.763812197577;TBP:-0.770270069061;TP53:-0.770350750705;POU1F1:-0.777425705525;FOSL2:-0.806499079609;HNF4A_NR2F1,2:-0.828453791748;RXR{A,B,G}:-0.890259120154;PAX8:-0.899739312895;BACH2:-0.930607713076;RUNX1..3:-0.946964625239;FOS_FOS{B,L1}_JUN{B,D}:-1.00887828207;GLI1..3:-1.01395059182;EVI1:-1.04654552829;TEAD1:-1.05647049849;ALX4:-1.07090508143;E2F1..5:-1.15108443157;ZBTB16:-1.18938980068;NFKB1_REL_RELA:-1.19032506545;NKX3-1:-1.20047918226;SRF:-1.28117795882;CDX1,2,4:-1.28224875445;POU2F1..3:-1.2882434316;HLF:-1.29532150501;HIF1A:-1.32278376032;MYB:-1.36781835619;RXRA_VDR{dimer}:-1.38282951087;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40340395981;ELK1,4_GABP{A,B1}:-1.40364703634;NR6A1:-1.52911217582;STAT5{A,B}:-1.53487219856;NKX2-1,4:-1.53623903372;ELF1,2,4:-1.58497440119;PPARG:-1.65161613442;HES1:-1.67703586126;EN1,2:-1.72388557049;PITX1..3:-1.94841013439;AIRE:-2.01257721933;HOX{A5,B5}:-2.79274975738 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10012-101C3;search_select_hide=table117:FF:10012-101C3 | |||
}} | }} | ||
Latest revision as of 12:13, 3 June 2020
| Name: | brain, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10617 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10617
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10617
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0429 |
| 10 | 10 | 0.0284 |
| 100 | 100 | 0.236 |
| 101 | 101 | 0.806 |
| 102 | 102 | 0.731 |
| 103 | 103 | 0.283 |
| 104 | 104 | 0.139 |
| 105 | 105 | 0.147 |
| 106 | 106 | 0.0801 |
| 107 | 107 | 0.18 |
| 108 | 108 | 0.903 |
| 109 | 109 | 0.00779 |
| 11 | 11 | 0.0135 |
| 110 | 110 | 0.0327 |
| 111 | 111 | 0.0633 |
| 112 | 112 | 0.525 |
| 113 | 113 | 0.662 |
| 114 | 114 | 0.123 |
| 115 | 115 | 0.583 |
| 116 | 116 | 0.208 |
| 117 | 117 | 0.00796 |
| 118 | 118 | 0.0985 |
| 119 | 119 | 0.126 |
| 12 | 12 | 0.524 |
| 120 | 120 | 0.188 |
| 121 | 121 | 0.445 |
| 122 | 122 | 0.697 |
| 123 | 123 | 0.26 |
| 124 | 124 | 0.0427 |
| 125 | 125 | 0.277 |
| 126 | 126 | 0.0393 |
| 127 | 127 | 0.545 |
| 128 | 128 | 0.272 |
| 129 | 129 | 0.524 |
| 13 | 13 | 4.20359e-4 |
| 130 | 130 | 0.371 |
| 131 | 131 | 0.0408 |
| 132 | 132 | 0.681 |
| 133 | 133 | 0.00144 |
| 134 | 134 | 0.386 |
| 135 | 135 | 0.0754 |
| 136 | 136 | 0.00548 |
| 137 | 137 | 0.865 |
| 138 | 138 | 0.827 |
| 139 | 139 | 0.12 |
| 14 | 14 | 0.782 |
| 140 | 140 | 0.138 |
| 141 | 141 | 0.377 |
| 142 | 142 | 0.82 |
| 143 | 143 | 0.0144 |
| 144 | 144 | 0.962 |
| 145 | 145 | 0.0805 |
| 146 | 146 | 0.55 |
| 147 | 147 | 0.902 |
| 148 | 148 | 0.457 |
| 149 | 149 | 0.471 |
| 15 | 15 | 0.0581 |
| 150 | 150 | 0.135 |
| 151 | 151 | 0.68 |
| 152 | 152 | 0.135 |
| 153 | 153 | 0.824 |
| 154 | 154 | 0.589 |
| 155 | 155 | 0.448 |
| 156 | 156 | 0.36 |
| 157 | 157 | 0.439 |
| 158 | 158 | 0.924 |
| 159 | 159 | 0.0935 |
| 16 | 16 | 0.0858 |
| 160 | 160 | 0.281 |
| 161 | 161 | 0.18 |
| 162 | 162 | 0.773 |
| 163 | 163 | 0.708 |
| 164 | 164 | 0.0141 |
| 165 | 165 | 0.0747 |
| 166 | 166 | 0.922 |
| 167 | 167 | 0.415 |
| 168 | 168 | 0.629 |
| 169 | 169 | 0.0102 |
| 17 | 17 | 0.17 |
| 18 | 18 | 0.282 |
| 19 | 19 | 0.252 |
| 2 | 2 | 0.913 |
| 20 | 20 | 0.0592 |
| 21 | 21 | 0.0566 |
| 22 | 22 | 0.277 |
| 23 | 23 | 0.533 |
| 24 | 24 | 0.0958 |
| 25 | 25 | 0.466 |
| 26 | 26 | 5.73358e-5 |
| 27 | 27 | 0.885 |
| 28 | 28 | 0.595 |
| 29 | 29 | 0.00891 |
| 3 | 3 | 0.0279 |
| 30 | 30 | 0.57 |
| 31 | 31 | 0.988 |
| 32 | 32 | 0.0589 |
| 33 | 33 | 0.0632 |
| 34 | 34 | 0.836 |
| 35 | 35 | 0.588 |
| 36 | 36 | 0.118 |
| 37 | 37 | 0.0349 |
| 38 | 38 | 0.33 |
| 39 | 39 | 0.298 |
| 4 | 4 | 0.794 |
| 40 | 40 | 0.0403 |
| 41 | 41 | 0.435 |
| 42 | 42 | 0.154 |
| 43 | 43 | 0.118 |
| 44 | 44 | 0.283 |
| 45 | 45 | 0.822 |
| 46 | 46 | 0.061 |
| 47 | 47 | 0.0673 |
| 48 | 48 | 0.049 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.563 |
| 50 | 50 | 0.304 |
| 51 | 51 | 0.553 |
| 52 | 52 | 0.746 |
| 53 | 53 | 0.898 |
| 54 | 54 | 0.493 |
| 55 | 55 | 0.444 |
| 56 | 56 | 0.48 |
| 57 | 57 | 0.192 |
| 58 | 58 | 0.304 |
| 59 | 59 | 0.208 |
| 6 | 6 | 0.666 |
| 60 | 60 | 0.0956 |
| 61 | 61 | 0.0637 |
| 62 | 62 | 0.203 |
| 63 | 63 | 0.16 |
| 64 | 64 | 0.204 |
| 65 | 65 | 0.326 |
| 66 | 66 | 0.175 |
| 67 | 67 | 0.343 |
| 68 | 68 | 0.237 |
| 69 | 69 | 0.547 |
| 7 | 7 | 0.0447 |
| 70 | 70 | 0.0388 |
| 71 | 71 | 0.00707 |
| 72 | 72 | 0.511 |
| 73 | 73 | 0.0362 |
| 74 | 74 | 0.762 |
| 75 | 75 | 0.025 |
| 76 | 76 | 0.263 |
| 77 | 77 | 0.262 |
| 78 | 78 | 0.00168 |
| 79 | 79 | 0.434 |
| 8 | 8 | 0.0746 |
| 80 | 80 | 0.914 |
| 81 | 81 | 0.67 |
| 82 | 82 | 0.6 |
| 83 | 83 | 0.248 |
| 84 | 84 | 0.505 |
| 85 | 85 | 0.295 |
| 86 | 86 | 0.202 |
| 87 | 87 | 0.00542 |
| 88 | 88 | 0.828 |
| 89 | 89 | 0.699 |
| 9 | 9 | 0.539 |
| 90 | 90 | 0.0749 |
| 91 | 91 | 0.558 |
| 92 | 92 | 0.574 |
| 93 | 93 | 0.973 |
| 94 | 94 | 0.0916 |
| 95 | 95 | 0.0176 |
| 96 | 96 | 0.938 |
| 97 | 97 | 0.712 |
| 98 | 98 | 0.202 |
| 99 | 99 | 0.918 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10617
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010012 human brain - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010012 (human brain - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)
