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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004925
|accession_numbers=CAGE;DRX008744;DRR009616;DRZ001041;DRZ002426;DRZ012391;DRZ013776
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000341,UBERON:0000974,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000153,UBERON:0007811
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000341,UBERON:0000974,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000153,UBERON:0007811
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.15!140.22!PAX8;;chr9:100615499..100615519,+!p1@FOXE1!2.13!134.03!FOXE1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.82!65.71!PEG3;;chr15:42749722..42749739,-!p2@ZFP106!1.77!101.89!ZFP106;;chr19:46801639..46801699,+!p1@HIF3A!1.77!57.85!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!1.77!57.85!MYOG;;chr20:62680984..62680999,-!p1@SOX18!1.67!59.99!SOX18;;chr1:201979703..201979721,+!p2@ELF3!1.66!45.23!ELF3;;chr19:46800289..46800327,+!p2@HIF3A!1.66!44.52!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.65!44.04!EHF;;chr8:25902876..25902936,-!p1@EBF2!1.65!43.57!EBF2;;chr6:19837592..19837621,+!p1@ID4!1.62!237.59!ID4;;chr2:122042770..122042785,-!p1@TFCP2L1!1.60!38.80!TFCP2L1;;chr4:57547454..57547469,-!p1@HOPX!1.59!38.33!HOPX;;chr17:53342311..53342400,+!p1@HLF!1.57!40.95!HLF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.95!ZBED1;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.18!PROX1;;chr10:94449703..94449718,+!p1@HHEX!1.52!121.17!HHEX;;chr10:131762504..131762555,-!p1@EBF3!1.49!29.76!EBF3;;chr1:40105299..40105326,-!p1@HEYL!1.48!29.28!HEYL;;chr8:10588010..10588030,-!p1@SOX7!1.47!28.33!SOX7;;chr2:19558373..19558392,-!p1@OSR1!1.44!70.47!OSR1;;chr1:201979743..201979762,+!p1@ELF3!1.44!26.66!ELF3;;chr5:158526917..158526932,-!p1@EBF1!1.42!61.66!EBF1;;chr12:52437488..52437507,+!p2@NR4A1!1.42!25.23!NR4A1;;chr21:39870339..39870443,-!p1@ERG!1.38!22.85!ERG;;chr7:15726296..15726315,-!p1@MEOX2!1.37!22.62!MEOX2;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.33!NFATC2;;chr17:74137321..74137337,-!p1@FOXJ1!1.35!21.43!FOXJ1;;chr8:102504651..102504683,+!p1@GRHL2!1.34!20.71!GRHL2;;chr1:170632285..170632309,+!p1@PRRX1!1.33!22.85!PRRX1;;chr5:133451294..133451310,+!p2@TCF7!1.31!19.28!TCF7;;chr16:79634624..79634642,-!p1@MAF!1.29!72.13!MAF;;chr19:2867325..2867348,+!p1@ZNF556!1.29!18.33!ZNF556;;chr6:1312325..1312340,+!p1@FOXQ1!1.28!29.28!FOXQ1;;chr8:106330656..106330684,+!p1@ZFPM2!1.25!43.33!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!1.25!28.81!FOXP2;;chr22:19748231..19748317,+!p1@TBX1!1.25!16.66!TBX1;;chr5:134369879..134369898,-!p2@PITX1!1.24!16.19!PITX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!23.09!ZBTB16;;chr12:96588368..96588394,+!p3@ELK3!1.22!41.42!ELK3;;chr20:51588873..51588953,+!p1@TSHZ2!1.20!19.52!TSHZ2;;chr6:28321971..28321995,-!p1@ZNF323!1.20!15.00!ZNF323;;chr12:81110684..81110700,+!p1@MYF5!1.20!14.76!MYF5;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.71!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.19!26.19!MAF;;chr17:80797886..80797906,-!p1@ZNF750!1.18!14.05!ZNF750;;chr3:114819124..114819200,-!p3@ZBTB20!1.17!32.14!ZBTB20;;chr5:158527104..158527135,-!p4@EBF1!1.17!13.81!EBF1;;chr1:61548225..61548299,+!p1@NFIA!1.16!175.69!NFIA;;chr1:209979467..209979494,-!p1@IRF6!1.16!15.24!IRF6;;chr1:61548374..61548415,+!p4@NFIA!1.15!24.52!NFIA;;chr2:145277882..145277967,-!p3@ZEB2!1.14!21.90!ZEB2;;chr15:57511609..57511651,+!p2@TCF12!1.14!21.66!TCF12;;chr18:53068911..53068935,-!p4@TCF4!1.14!14.52!TCF4;;chr1:170633348..170633399,+!p2@PRRX1!1.13!16.90!PRRX1;;chr14:36990416..36990438,-!p4@NKX2-1!1.13!12.62!NKX2-1;;chr14:61116183..61116208,-!p1@SIX1!1.12!45.95!SIX1;;chr12:115122005..115122016,-!p3@TBX3!1.12!14.52!TBX3;;chr6:144329384..144329405,-!p1@PLAGL1!1.11!136.65!PLAGL1;;chr7:19157248..19157268,-!p1@TWIST1!1.10!32.61!TWIST1;;chr2:60780753..60780800,-!p1@BCL11A!1.09!55.95!BCL11A;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.14!NFIA;;chr1:151804244..151804310,-!p1@RORC!1.08!10.95!RORC;;chr20:30433396..30433414,-!p1@FOXS1!1.08!10.95!FOXS1;;chr12:81101404..81101421,+!p1@MYF6!1.08!10.95!MYF6;;chr17:1959369..1959388,+!p2@HIC1!1.06!28.09!HIC1;;chr1:61548069..61548102,+!p3@NFIA!1.06!25.71!NFIA;;chr19:20278043..20278054,+!p2@ZNF486!1.06!10.47!ZNF486;;chr16:51185318..51185348,-!p2@SALL1!1.05!10.24!SALL1;;chr22:31739291..31739311,-!p2@PATZ1!1.05!10.24!PATZ1;;chr5:2751762..2751784,-!p1@IRX2!1.05!10.24!IRX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.05!10.24!PKNOX2;;chr1:164528410..164528428,+!p1@PBX1!1.04!74.99!PBX1;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.43!PRRX1;;chr22:38380543..38380569,-!p1@SOX10!1.04!10.00!SOX10;;chr11:16629261..16629284,-!p1@SOX6!1.04!10.00!SOX6;;chr4:174451370..174451387,-!p1@HAND2!1.03!9.76!HAND2;;chr3:12330560..12330579,+!p1@PPARG!1.02!10.95!PPARG;;chr11:128457446..128457461,-!p4@ETS1!1.02!9.52!ETS1;;chr12:81101472..81101483,+!p2@MYF6!1.02!9.52!MYF6;;chr7:15726243..15726293,-!p2@MEOX2!1.02!9.52!MEOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.01!73.32!MEF2C;;chr15:96873984..96873999,+!p3@NR2F2!1.01!69.51!NR2F2;;chr2:166326200..166326216,+!p1@CSRNP3!1.01!13.57!CSRNP3;;chr14:37131058..37131139,+!p1@PAX9!1.01!9.28!PAX9;;chrX:591524..591527,+!p1@SHOX!1.00!9.05!SHOX;;chr4:149363494..149363543,-!p1@NR3C2!1.00!9.05!NR3C2;;chr12:115121962..115121987,-!p1@TBX3!0.99!74.99!TBX3;;chr10:70320074..70320106,+!p1@TET1!0.99!18.09!TET1;;chr13:72441315..72441454,-!p1@DACH1!0.98!17.38!DACH1;;chr3:169381420..169381535,-!p1@MECOM!0.98!10.00!MECOM;;chr2:24714729..24714761,+!p1@NCOA1!0.98!8.57!NCOA1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000341
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/throat%252c%2520fetal%252c%2520donor1.CNhs11770.10061-101H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/throat%252c%2520fetal%252c%2520donor1.CNhs11770.10061-101H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/throat%252c%2520fetal%252c%2520donor1.CNhs11770.10061-101H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/throat%252c%2520fetal%252c%2520donor1.CNhs11770.10061-101H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/throat%252c%2520fetal%252c%2520donor1.CNhs11770.10061-101H7.hg38.nobarcode.ctss.bed.gz
|id=FF:10061-101H7
|id=FF:10061-101H7
|is_a=EFO:0002091;;FF:0010061
|is_a=EFO:0002091;;FF:0010061
|is_obsolete=
|is_obsolete=
|library_id=CNhs11770
|library_id_phase_based=2:CNhs11770
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10061
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10061
|name=throat, fetal, donor1
|name=throat, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11770,LSID820,release009,COMPLETED
|profile_hcage=CNhs11770,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 84: Line 100:
|top_motifs=MEF2{A,B,C,D}:4.15116208778;ZNF384:3.91640936039;MYBL2:3.09895486916;HOX{A4,D4}:2.79698051754;SPZ1:2.58302879695;TGIF1:2.49203911724;SOX5:2.3343367086;MAZ:2.32883940431;IKZF2:2.29592656067;TAL1_TCF{3,4,12}:2.25636778738;HMGA1,2:2.13100996522;TBP:2.0858957283;PAX6:1.98704983596;HIC1:1.94559210094;GCM1,2:1.94526767579;POU3F1..4:1.90997601167;ZIC1..3:1.90072237726;LMO2:1.79146145848;CDC5L:1.77590019315;PAX5:1.77057916247;KLF4:1.7332640335;BPTF:1.6176458952;PATZ1:1.60519473547;RFX2..5_RFXANK_RFXAP:1.58618990389;MYOD1:1.57861284823;FOXP1:1.55831619468;MZF1:1.54143816735;RBPJ:1.520956569;NR5A1,2:1.50755890299;NKX6-1,2:1.50096531339;SP1:1.49583781116;PRDM1:1.46904314798;CDX1,2,4:1.46802542399;NKX2-3_NKX2-5:1.46220991139;TFAP2{A,C}:1.46108325652;FOXL1:1.44970094048;SMAD1..7,9:1.43342469515;FOXP3:1.42883231177;SNAI1..3:1.42091915791;MED-1{core}:1.419713458;FOXO1,3,4:1.38884041134;ESR1:1.37596929805;NR1H4:1.36300744738;VSX1,2:1.3350921463;NHLH1,2:1.31024142676;GLI1..3:1.24365770219;RFX1:1.24157551856;IKZF1:1.21958177719;SRF:1.19743740569;EP300:1.19064824687;TLX2:1.18014303675;TFAP2B:1.1557015509;GATA4:1.15326433847;GTF2I:1.1245911936;NR6A1:1.11256643031;NKX2-1,4:1.10729770233;NFATC1..3:1.10613096558;TEAD1:1.10217403215;RREB1:1.10047143325;TBX4,5:1.09896714734;EGR1..3:1.08894714299;XBP1:1.07193771986;TFAP4:1.06290321644;MTF1:1.05666865116;MTE{core}:1.03654086589;TLX1..3_NFIC{dimer}:1.01401794188;ALX1:1.00642315658;POU6F1:0.995917831195;GFI1B:0.981641095091;XCPE1{core}:0.955755896784;ZBTB16:0.942904579334;FOXD3:0.939265694946;SOX{8,9,10}:0.934947749866;GFI1:0.933940244573;CUX2:0.927193470179;TFCP2:0.919638988237;FOXN1:0.917684431086;ZEB1:0.900610765337;HMX1:0.892609252424;BREu{core}:0.846493900584;SOX2:0.834194771233;NFIX:0.825280335197;FOX{D1,D2}:0.814914652354;POU1F1:0.790730778634;NR3C1:0.789698758813;ZFP161:0.783893718381;ATF2:0.753163054284;POU5F1:0.752889303363;RORA:0.748929426224;GTF2A1,2:0.735293804859;NKX3-1:0.710703414531;LHX3,4:0.692939312091;HOX{A6,A7,B6,B7}:0.692816422233;NANOG{mouse}:0.68926704999;RXRA_VDR{dimer}:0.680609733007;MYFfamily:0.651411181257;FOXA2:0.631857455649;UFEwm:0.598338359674;HSF1,2:0.572364051032;AIRE:0.568621579759;TOPORS:0.542431477844;ZNF238:0.542293359511;FOXM1:0.54149989643;REST:0.533974456093;PBX1:0.470333874238;ZNF423:0.461406768841;FOXQ1:0.440732335365;SOX17:0.431926474273;NKX3-2:0.428326067934;DBP:0.421474321036;ZNF143:0.375200565382;TEF:0.294572297682;HBP1_HMGB_SSRP1_UBTF:0.294037821104;STAT1,3:0.289757661432;ZNF148:0.221363341695;PAX3,7:0.198899069452;ATF6:0.159979321929;NFY{A,B,C}:0.143391484916;YY1:0.135148682872;HAND1,2:0.113918986068;ARID5B:0.0979431644466;IRF7:0.0912956500984;NRF1:0.079870231066;STAT5{A,B}:0.06780926698;ALX4:0.0672587119971;GZF1:0.0670373962903;PITX1..3:0.0594139788839;EVI1:0.0543236657771;E2F1..5:-0.0138855277834;AR:-0.0322523968682;IRF1,2:-0.0347482944509;OCT4_SOX2{dimer}:-0.0354710669325;ONECUT1,2:-0.0370579123759;RXR{A,B,G}:-0.0517352507717;LEF1_TCF7_TCF7L1,2:-0.0551477998538;TP53:-0.0620913498787;PRRX1,2:-0.0867211201429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.102684257242;ETS1,2:-0.13551743164;DMAP1_NCOR{1,2}_SMARC:-0.160869531248;GATA6:-0.165892574563;FOX{I1,J2}:-0.18930991981;ELF1,2,4:-0.195848866134;SREBF1,2:-0.200663968515;JUN:-0.212402757687;EN1,2:-0.242976898318;PAX4:-0.267026870616;STAT2,4,6:-0.274845304378;EBF1:-0.290379949466;ZBTB6:-0.298624269686;SPI1:-0.310690083592;NANOG:-0.387502008982;FOX{F1,F2,J1}:-0.392627161659;MAFB:-0.3938737986;PDX1:-0.395688279111;T:-0.396018905278;HNF4A_NR2F1,2:-0.401989353436;PAX1,9:-0.408006600711;ESRRA:-0.417271465132;TFDP1:-0.428639822483;SPIB:-0.430665781317;HES1:-0.442353454778;CREB1:-0.484174811206;PAX2:-0.538620110541;HNF1A:-0.578098933297;CRX:-0.595134267791;ATF4:-0.626901716712;NKX2-2,8:-0.63530178169;NFIL3:-0.645084983141;NFE2L1:-0.649883360488;HIF1A:-0.666528918339;ADNP_IRX_SIX_ZHX:-0.673748679085;HOXA9_MEIS1:-0.695080871277;NFKB1_REL_RELA:-0.730098403681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.736412958037;RUNX1..3:-0.764353502169;HLF:-0.824084378297;FOSL2:-0.833818730169;ELK1,4_GABP{A,B1}:-0.871936788394;AHR_ARNT_ARNT2:-0.909418202468;FOS_FOS{B,L1}_JUN{B,D}:-1.0506927738;ATF5_CREB3:-1.05841964027;MYB:-1.06150266035;POU2F1..3:-1.10632421351;HOX{A5,B5}:-1.12465260136;BACH2:-1.14873482176;NFE2:-1.15819177442;CEBPA,B_DDIT3:-1.16860224223;NFE2L2:-1.44998330922;PAX8:-1.51231357873;bHLH_family:-1.66149427794;PPARG:-1.68436384075
|top_motifs=MEF2{A,B,C,D}:4.15116208778;ZNF384:3.91640936039;MYBL2:3.09895486916;HOX{A4,D4}:2.79698051754;SPZ1:2.58302879695;TGIF1:2.49203911724;SOX5:2.3343367086;MAZ:2.32883940431;IKZF2:2.29592656067;TAL1_TCF{3,4,12}:2.25636778738;HMGA1,2:2.13100996522;TBP:2.0858957283;PAX6:1.98704983596;HIC1:1.94559210094;GCM1,2:1.94526767579;POU3F1..4:1.90997601167;ZIC1..3:1.90072237726;LMO2:1.79146145848;CDC5L:1.77590019315;PAX5:1.77057916247;KLF4:1.7332640335;BPTF:1.6176458952;PATZ1:1.60519473547;RFX2..5_RFXANK_RFXAP:1.58618990389;MYOD1:1.57861284823;FOXP1:1.55831619468;MZF1:1.54143816735;RBPJ:1.520956569;NR5A1,2:1.50755890299;NKX6-1,2:1.50096531339;SP1:1.49583781116;PRDM1:1.46904314798;CDX1,2,4:1.46802542399;NKX2-3_NKX2-5:1.46220991139;TFAP2{A,C}:1.46108325652;FOXL1:1.44970094048;SMAD1..7,9:1.43342469515;FOXP3:1.42883231177;SNAI1..3:1.42091915791;MED-1{core}:1.419713458;FOXO1,3,4:1.38884041134;ESR1:1.37596929805;NR1H4:1.36300744738;VSX1,2:1.3350921463;NHLH1,2:1.31024142676;GLI1..3:1.24365770219;RFX1:1.24157551856;IKZF1:1.21958177719;SRF:1.19743740569;EP300:1.19064824687;TLX2:1.18014303675;TFAP2B:1.1557015509;GATA4:1.15326433847;GTF2I:1.1245911936;NR6A1:1.11256643031;NKX2-1,4:1.10729770233;NFATC1..3:1.10613096558;TEAD1:1.10217403215;RREB1:1.10047143325;TBX4,5:1.09896714734;EGR1..3:1.08894714299;XBP1:1.07193771986;TFAP4:1.06290321644;MTF1:1.05666865116;MTE{core}:1.03654086589;TLX1..3_NFIC{dimer}:1.01401794188;ALX1:1.00642315658;POU6F1:0.995917831195;GFI1B:0.981641095091;XCPE1{core}:0.955755896784;ZBTB16:0.942904579334;FOXD3:0.939265694946;SOX{8,9,10}:0.934947749866;GFI1:0.933940244573;CUX2:0.927193470179;TFCP2:0.919638988237;FOXN1:0.917684431086;ZEB1:0.900610765337;HMX1:0.892609252424;BREu{core}:0.846493900584;SOX2:0.834194771233;NFIX:0.825280335197;FOX{D1,D2}:0.814914652354;POU1F1:0.790730778634;NR3C1:0.789698758813;ZFP161:0.783893718381;ATF2:0.753163054284;POU5F1:0.752889303363;RORA:0.748929426224;GTF2A1,2:0.735293804859;NKX3-1:0.710703414531;LHX3,4:0.692939312091;HOX{A6,A7,B6,B7}:0.692816422233;NANOG{mouse}:0.68926704999;RXRA_VDR{dimer}:0.680609733007;MYFfamily:0.651411181257;FOXA2:0.631857455649;UFEwm:0.598338359674;HSF1,2:0.572364051032;AIRE:0.568621579759;TOPORS:0.542431477844;ZNF238:0.542293359511;FOXM1:0.54149989643;REST:0.533974456093;PBX1:0.470333874238;ZNF423:0.461406768841;FOXQ1:0.440732335365;SOX17:0.431926474273;NKX3-2:0.428326067934;DBP:0.421474321036;ZNF143:0.375200565382;TEF:0.294572297682;HBP1_HMGB_SSRP1_UBTF:0.294037821104;STAT1,3:0.289757661432;ZNF148:0.221363341695;PAX3,7:0.198899069452;ATF6:0.159979321929;NFY{A,B,C}:0.143391484916;YY1:0.135148682872;HAND1,2:0.113918986068;ARID5B:0.0979431644466;IRF7:0.0912956500984;NRF1:0.079870231066;STAT5{A,B}:0.06780926698;ALX4:0.0672587119971;GZF1:0.0670373962903;PITX1..3:0.0594139788839;EVI1:0.0543236657771;E2F1..5:-0.0138855277834;AR:-0.0322523968682;IRF1,2:-0.0347482944509;OCT4_SOX2{dimer}:-0.0354710669325;ONECUT1,2:-0.0370579123759;RXR{A,B,G}:-0.0517352507717;LEF1_TCF7_TCF7L1,2:-0.0551477998538;TP53:-0.0620913498787;PRRX1,2:-0.0867211201429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.102684257242;ETS1,2:-0.13551743164;DMAP1_NCOR{1,2}_SMARC:-0.160869531248;GATA6:-0.165892574563;FOX{I1,J2}:-0.18930991981;ELF1,2,4:-0.195848866134;SREBF1,2:-0.200663968515;JUN:-0.212402757687;EN1,2:-0.242976898318;PAX4:-0.267026870616;STAT2,4,6:-0.274845304378;EBF1:-0.290379949466;ZBTB6:-0.298624269686;SPI1:-0.310690083592;NANOG:-0.387502008982;FOX{F1,F2,J1}:-0.392627161659;MAFB:-0.3938737986;PDX1:-0.395688279111;T:-0.396018905278;HNF4A_NR2F1,2:-0.401989353436;PAX1,9:-0.408006600711;ESRRA:-0.417271465132;TFDP1:-0.428639822483;SPIB:-0.430665781317;HES1:-0.442353454778;CREB1:-0.484174811206;PAX2:-0.538620110541;HNF1A:-0.578098933297;CRX:-0.595134267791;ATF4:-0.626901716712;NKX2-2,8:-0.63530178169;NFIL3:-0.645084983141;NFE2L1:-0.649883360488;HIF1A:-0.666528918339;ADNP_IRX_SIX_ZHX:-0.673748679085;HOXA9_MEIS1:-0.695080871277;NFKB1_REL_RELA:-0.730098403681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.736412958037;RUNX1..3:-0.764353502169;HLF:-0.824084378297;FOSL2:-0.833818730169;ELK1,4_GABP{A,B1}:-0.871936788394;AHR_ARNT_ARNT2:-0.909418202468;FOS_FOS{B,L1}_JUN{B,D}:-1.0506927738;ATF5_CREB3:-1.05841964027;MYB:-1.06150266035;POU2F1..3:-1.10632421351;HOX{A5,B5}:-1.12465260136;BACH2:-1.14873482176;NFE2:-1.15819177442;CEBPA,B_DDIT3:-1.16860224223;NFE2L2:-1.44998330922;PAX8:-1.51231357873;bHLH_family:-1.66149427794;PPARG:-1.68436384075
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10061-101H7;search_select_hide=table117:FF:10061-101H7
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:throat, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11770
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethroat
dev stage25 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB212133
catalog numberCat:RtHFN: Throat
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004925
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11770 CAGE DRX008744 DRR009616
Accession ID Hg19

Library idBAMCTSS
CNhs11770 DRZ001041 DRZ002426
Accession ID Hg38

Library idBAMCTSS
CNhs11770 DRZ012391 DRZ013776
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0448
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0813
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.58
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0.0927
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0194
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.625
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.385
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0232
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.947
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.159
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0337
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.117
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.234
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.0927
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0661
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0927
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.637
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0927
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.287
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0927
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.157
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0927
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.234
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0927
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0927
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0.0927
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0589
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0927
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.291
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.385
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.637
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0927
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0554
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0.385
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.202
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.529
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0927
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.579
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.0927
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.291
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.234
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11770

Jaspar motifP-value
MA0002.23.67495e-5
MA0003.10.353
MA0004.10.0271
MA0006.10.859
MA0007.10.139
MA0009.10.0562
MA0014.10.666
MA0017.10.0821
MA0018.20.487
MA0019.10.579
MA0024.10.274
MA0025.10.187
MA0027.10.963
MA0028.10.0106
MA0029.10.371
MA0030.10.461
MA0031.10.679
MA0035.20.0276
MA0038.10.87
MA0039.20.384
MA0040.10.524
MA0041.10.474
MA0042.10.932
MA0043.10.053
MA0046.10.00801
MA0047.20.85
MA0048.10.195
MA0050.10.0188
MA0051.10.0756
MA0052.18.46409e-14
MA0055.10.0411
MA0057.10.792
MA0058.10.0239
MA0059.10.00545
MA0060.10.823
MA0061.17.7185e-5
MA0062.21.53751e-5
MA0065.20.00257
MA0066.10.0641
MA0067.10.0451
MA0068.10.00851
MA0069.10.39
MA0070.10.752
MA0071.10.358
MA0072.10.242
MA0073.10.456
MA0074.10.204
MA0076.10.0166
MA0077.10.827
MA0078.10.548
MA0079.20.791
MA0080.21.82208e-7
MA0081.10.0372
MA0083.10.644
MA0084.10.087
MA0087.10.107
MA0088.10.0362
MA0090.10.422
MA0091.10.652
MA0092.10.482
MA0093.10.0418
MA0099.22.08879e-24
MA0100.10.943
MA0101.11.23014e-4
MA0102.20.00551
MA0103.10.965
MA0104.20.00306
MA0105.14.28877e-9
MA0106.10.0045
MA0107.11.89891e-4
MA0108.22.53625e-9
MA0111.10.726
MA0112.20.0114
MA0113.10.976
MA0114.10.0161
MA0115.10.296
MA0116.13.69892e-5
MA0117.10.13
MA0119.10.615
MA0122.10.291
MA0124.10.595
MA0125.10.22
MA0131.10.831
MA0135.10.512
MA0136.16.01483e-10
MA0137.20.645
MA0138.20.907
MA0139.10.0887
MA0140.10.0113
MA0141.10.0169
MA0142.10.048
MA0143.10.339
MA0144.10.431
MA0145.10.637
MA0146.10.0739
MA0147.10.00119
MA0148.10.885
MA0149.10.0237
MA0150.15.40057e-9
MA0152.10.0278
MA0153.10.982
MA0154.10.00129
MA0155.10.587
MA0156.11.35096e-7
MA0157.10.403
MA0159.10.0823
MA0160.10.00872
MA0162.10.37
MA0163.12.90427e-8
MA0164.10.429
MA0258.10.072
MA0259.10.151



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11770

Novel motifP-value
10.0546
100.0476
1000.408
1010.772
1020.577
1030.0595
1040.551
1050.764
1060.16
1070.978
1080.935
1090.00253
110.0694
1100.166
1110.0604
1120.737
1130.0199
1140.00247
1150.43
1160.86
1170.0147
1180.0467
1190.242
120.426
1200.248
1210.9
1220.112
1230.139
1240.19
1250.302
1260.672
1270.126
1280.534
1290.674
130.215
1300.798
1310.568
1320.0795
1330.302
1340.472
1350.47
1360.325
1370.502
1380.452
1390.137
140.737
1400.652
1410.273
1420.287
1431.3921e-4
1440.85
1450.663
1460.472
1470.315
1480.0574
1490.658
150.0563
1500.42
1510.477
1520.46
1530.606
1540.809
1550.164
1560.626
1570.804
1580.414
1590.81
160.315
1600.522
1610.373
1620.262
1630.0399
1640.208
1650.605
1660.251
1670.0861
1680.829
1690.0117
170.123
180.00571
190.777
20.713
200.139
210.484
220.367
230.576
240.188
250.61
260.0202
270.619
280.551
290.0435
30.126
300.194
310.736
320.191
330.292
340.783
350.183
360.0186
370.0358
380.31
390.734
40.717
400.0643
410.104
420.204
430.047
440.811
450.903
460.0722
470.0424
480.108
490.0495
50.331
500.889
510.345
520.915
530.733
540.382
550.333
560.446
570.265
580.323
590.167
60.759
600.526
610.13
620.22
630.484
640.222
650.28
660.0545
670.415
680.787
690.841
70.623
700.0325
710.0191
720.158
730.102
740.468
750.0152
760.125
770.509
780.0989
790.649
80.0904
800.896
810.404
820.314
830.473
840.781
850.336
860.176
870.00227
880.78
890.526
90.8
900.0868
910.673
920.376
930.974
940.0446
950.00647
960.277
970.965
980.117
990.55



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11770


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000341 (throat)
0000974 (neck)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000153 (anterior region of body)
0007811 (craniocervical region)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010061 (human throat - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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