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{{f5samples
{{f5samples
|id=FF:10063-101H9
|DRA_sample_Accession=CAGE@SAMD00005719
|name=temporal lobe, fetal, donor1
|accession_numbers=CAGE;DRX008737;DRR009609;DRZ001034;DRZ002419;DRZ012384;DRZ013769!CAGE;DRX008738;DRR009610;DRZ001035;DRZ002420;DRZ012385;DRZ013770
|sample_id=10063
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409
|rna_tube_id=101H9
|rna_box=101
|rna_position=H9
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Biochain
|rna_lot_number=A702181
|rna_catalog_number=Cat:RtHFN: Brain temporal lobe
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=22 weeks fetus
|sample_tissue=temporal lobe
|sample_donor(cell lot)=1
|sample_sex=female
|sample_age=
|sample_ethnicity=A?
|rna_rin=7.1
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=50
|rna_concentration=2.5
|sample_note=/
|profile_hcage=Cnhs11772,LSID820,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000160,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001007,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002108,UBERON:0002114,UBERON:0002532,UBERON:0004119,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010063
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr20:43935474..43935490,+!p1@RBPJL!2.40!249.17!RBPJL;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.50!TCF21;;chr1:201979743..201979762,+!p1@ELF3!2.04!108.98!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!1.93!84.64!NR0B2;;chr4:174451370..174451387,-!p1@HAND2!1.89!76.71!HAND2;;chr1:201979703..201979721,+!p2@ELF3!1.87!72.48!ELF3;;chr16:85932760..85932775,+!p1@IRF8!1.86!71.95!IRF8;;chr5:149546334..149546364,+!p1@CDX1!1.81!63.48!CDX1;;chr8:76319876..76319926,+!p1@HNF4G!1.81!62.95!HNF4G;;chr19:4153613..4153652,+!p1@CREB3L3!1.79!61.37!CREB3L3;;chr13:28494130..28494168,+!p1@PDX1!1.75!55.02!PDX1;;chr1:214161272..214161322,+!p1@PROX1!1.65!60.31!PROX1;;chr20:62680984..62680999,-!p1@SOX18!1.65!57.66!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.65!43.91!EHF;;chr16:86544113..86544145,+!p1@FOXF1!1.62!50.26!FOXF1;;chr13:72441315..72441454,-!p1@DACH1!1.61!76.71!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!39.15!SPDEF;;chr2:182545234..182545252,-!p1@NEUROD1!1.59!38.09!NEUROD1;;chr20:42984330..42984364,+!p2@HNF4A!1.59!37.56!HNF4A;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.97!HEYL;;chr8:11561684..11561751,+!p1@GATA4!1.54!33.33!GATA4;;chr16:79634595..79634620,-!p2@MAF!1.52!58.19!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.14!FOXQ1;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.86!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.49!30.15!ERG;;chr19:46801639..46801699,+!p1@HIF3A!1.49!29.63!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.45!38.09!GATA6;;chr15:53082521..53082549,-!p1@ONECUT1!1.43!25.92!ONECUT1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.92!SOX6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.39!ZBED1;;chr2:145277882..145277967,-!p3@ZEB2!1.41!41.79!ZEB2;;chr18:55102628..55102646,+!p2@ONECUT2!1.41!24.86!ONECUT2;;chr19:50922187..50922204,+!p1@SPIB!1.40!24.34!SPIB;;chr20:43029862..43029900,+!p1@HNF4A!1.40!24.34!HNF4A;;chr8:76452097..76452126,+!p2@HNF4G!1.40!24.34!HNF4G;;chr10:23481233..23481249,+!p1@PTF1A!1.39!23.81!PTF1A;;chr12:100897130..100897149,+!p3@NR1H4!1.38!22.75!NR1H4;;chr7:15726296..15726315,-!p1@MEOX2!1.37!22.22!MEOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.36!21.69!HIF3A;;chr1:151804244..151804310,-!p1@RORC!1.35!21.16!RORC;;chr18:55102598..55102623,+!p1@ONECUT2!1.35!21.16!ONECUT2;;chr16:79634624..79634642,-!p1@MAF!1.34!80.94!MAF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.32!20.10!PEG3;;chr20:20348740..20348757,+!p1@INSM1!1.31!19.57!INSM1;;chr18:19749541..19749557,+!p1@GATA6!1.30!58.19!GATA6;;chr1:42801540..42801562,-!p4@FOXJ3!1.29!18.52!FOXJ3;;chr13:28543431..28543487,-!p1@CDX2!1.29!18.52!CDX2;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.34!FOXP1;;chr3:169381420..169381535,-!p1@MECOM!1.27!20.63!MECOM;;chr2:166326200..166326216,+!p1@CSRNP3!1.26!24.86!CSRNP3;;chr11:61520075..61520136,+!p1@C11orf9!1.25!34.92!C11orf9;;chr13:28543285..28543314,-!p2@CDX2!1.25!16.93!CDX2;;chr17:36105042..36105060,-!p1@HNF1B!1.25!16.93!HNF1B;;chrX:25034067..25034088,-!p1@ARX!1.24!16.40!ARX;;chr15:57511609..57511651,+!p2@TCF12!1.23!26.45!TCF12;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.28!NFATC2;;chr1:2985760..2985774,+!p1@PRDM16!1.23!15.87!PRDM16;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.87!SOX10;;chr12:52445218..52445237,+!p1@NR4A1!1.22!194.15!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!1.20!61.37!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.20!14.81!NR1I2;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.81!MNX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.20!14.81!MLXIPL;;chr7:15726243..15726293,-!p2@MEOX2!1.18!14.28!MEOX2;;chr10:101292684..101292706,+!p1@NKX2-3!1.18!14.28!NKX2-3;;chr2:68592406..68592424,+!p1@PLEK!1.17!13.75!PLEK;;chr1:200011711..200011752,+!p3@NR5A2!1.17!13.75!NR5A2;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.52!FOXF2;;chr13:73633131..73633149,+!p1@KLF5!1.15!139.13!KLF5;;chr12:96588368..96588394,+!p3@ELK3!1.15!35.44!ELK3;;chr5:50679228..50679288,+!p1@ISL1!1.15!13.23!ISL1;;chr16:79634581..79634592,-!p4@MAF!1.15!13.23!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.14!16.93!TSHZ2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.70!FOXA3;;chr6:391743..391759,+!p1@IRF4!1.14!12.70!IRF4;;chr5:88178983..88179012,-!p1@MEF2C!1.13!95.75!MEF2C;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.17!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.12!12.17!FOXA2;;chr11:47400078..47400106,-!p1@SPI1!1.12!12.17!SPI1;;chr4:109087445..109087463,-!p1@LEF1!1.12!12.17!LEF1;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.93!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.10!13.23!PPARG;;chr1:199996733..199996781,+!p1@NR5A2!1.10!11.64!NR5A2;;chr7:113726357..113726443,+!p1@FOXP2!1.09!19.57!FOXP2;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.92!ZBTB20;;chr3:27763807..27763822,-!p1@EOMES!1.06!10.58!EOMES;;chr7:115608319..115608352,-!p4@TFEC!1.06!10.58!TFEC;;chr8:102504651..102504683,+!p1@GRHL2!1.06!10.58!GRHL2;;chr13:28494109..28494122,+!p2@PDX1!1.06!10.58!PDX1;;chr2:19558373..19558392,-!p1@OSR1!1.05!28.04!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.04!25.39!EBF1;;chr12:52437488..52437507,+!p2@NR4A1!1.04!10.05!NR4A1;;chrX:85403445..85403479,+!p2@DACH2!1.04!10.05!DACH2;;chr20:30433396..30433414,-!p1@FOXS1!1.04!10.05!FOXS1;;chr17:41739283..41739297,-!p1@MEOX1!1.04!10.05!MEOX1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.16!TOX;;chr1:164528410..164528428,+!p1@PBX1!1.02!72.48!PBX1;;chr10:48355030..48355090,+!p1@ZNF488!1.02!12.17!ZNF488;;chr13:28543388..28543406,-!p3@CDX2!1.02!9.52!CDX2;;chr17:46671108..46671147,-!p1@HOXB5!1.02!9.52!HOXB5;;chr3:128212033..128212051,-!p1@GATA2!1.02!9.52!GATA2;;chr4:149363494..149363543,-!p1@NR3C2!1.00!8.99!NR3C2;;chr11:125034605..125034636,+!p2@PKNOX2!1.00!8.99!PKNOX2;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.99!NR5A2;;chr5:71803177..71803255,-!p1@ZNF366!1.00!8.99!ZNF366;;chr6:144289132..144289134,-!p3@PLAGL1!0.99!20.63!PLAGL1;;chr17:1959369..1959388,+!p2@HIC1!0.98!23.28!HIC1;;chr18:19749517..19749531,+!p3@GATA6!0.98!15.34!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.46!PKNOX2;;chr5:133451294..133451310,+!p2@TCF7!0.98!8.46!TCF7;;chr19:46806868..46806883,+!p3@HIF3A!0.98!8.46!HIF3A;;chr1:199996702..199996732,+!p5@NR5A2!0.98!8.46!NR5A2;;chr2:66662249..66662267,+!p2@MEIS1!0.97!32.80!MEIS1;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.28!NCOA2;;chr3:18486354..18486377,-!p2@SATB1!0.97!10.58!SATB1;;chr11:47279248..47279264,+!p3@NR1H3!0.97!9.52!NR1H3;;chr5:134369905..134369972,-!p1@PITX1!0.96!12.70!PITX1;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.94!HAND1;;chr7:27170359..27170381,-!p1@HOXA4!0.95!7.94!HOXA4;;chr8:76452129..76452159,+!p5@HNF4G!0.95!7.94!HNF4G;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.94!OVOL1;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.94!HAND2;;chr1:10754477..10754517,-!p1@CASZ1!0.93!12.70!CASZ1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.28!THRB;;chr6:117198400..117198441,+!p1@RFX6!0.92!7.41!RFX6;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.41!SOX17;;chr6:19837592..19837621,+!p1@ID4!0.91!46.03!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.91!37.03!BCL11A;;chr6:91006518..91006570,-!p1@BACH2!0.91!16.93!BACH2;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.70!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.90!8.46!MEIS2;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.46!GATA3;;chr17:53342311..53342400,+!p1@HLF!0.90!7.94!HLF;;chr4:94749897..94749909,+!p1@ATOH1!0.90!6.88!ATOH1;;chr7:27183291..27183324,-!p1@HOXA5!0.90!6.88!HOXA5;;chr8:10588010..10588030,-!p1@SOX7!0.90!6.88!SOX7;;chr8:41508327..41508355,-!p1@NKX6-3!0.90!6.88!NKX6-3;;chr20:22565370..22565388,-!p2@FOXA2!0.90!6.88!FOXA2;;chr20:61051039..61051057,-!p1@GATA5!0.90!6.88!GATA5;;chr10:131762504..131762555,-!p1@EBF3!0.90!6.88!EBF3;;chr11:31839488..31839515,-!p3@PAX6!0.90!6.88!PAX6;;chr11:66188503..66188511,+!p1@NPAS4!0.90!6.88!NPAS4;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.88!DACH1;;chr2:100759037..100759058,-!p2@AFF3!0.90!6.88!AFF3;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.21!MXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.15!ZNF521;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.34!MEIS1;;chr2:192015701..192015743,-!p1@STAT4!0.89!9.52!STAT4;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.42!SOX9;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.97!CREB3L1;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!8.99!DNMT3A;;chr9:14314131..14314147,-!p2@NFIB!0.87!38.09!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!0.87!14.81!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!0.87!8.46!NFATC2;;chr19:54041669..54041697,+!p2@ZNF331!0.87!6.35!ZNF331;;chr1:63788229..63788250,+!p1@FOXD3!0.87!6.35!FOXD3;;chr11:34645791..34645836,+!p3@EHF!0.87!6.35!EHF;;chr13:28543253..28543276,-!p5@CDX2!0.87!6.35!CDX2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.87!6.35!TFCP2L1;;chr2:16080659..16080685,+!p1@MYCN!0.87!6.35!MYCN;;chr7:27183263..27183284,-!p2@HOXA5!0.87!6.35!HOXA5;;chr18:53089538..53089578,-!p14@TCF4!0.87!6.35!TCF4;;chr19:58220517..58220583,-!p1@ZNF154!0.86!20.63!ZNF154;;chr11:47279504..47279563,+!p1@NR1H3!0.86!14.81!NR1H3;;chr20:39317868..39317884,-!p1@MAFB!0.85!76.71!MAFB;;chr15:37392616..37392638,-!p2@MEIS2!0.85!20.10!MEIS2;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.46!ZNF711;;chr2:60780607..60780624,-!p2@BCL11A!0.84!19.04!BCL11A;;chr18:77155922..77155939,+!p1@NFATC1!0.84!16.93!NFATC1;;chr9:117150254..117150271,-!p1@AKNA!0.84!16.93!AKNA;;chr13:73636516..73636532,+!p3@KLF5!0.84!6.88!KLF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.83!71.95!PLAGL1;;chr15:96873984..96873999,+!p3@NR2F2!0.83!45.50!NR2F2;;chr1:221052840..221052875,+!p4@HLX!0.83!6.88!HLX;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.82!RUNX3;;chr17:6926362..6926377,+!p1@BCL6B!0.83!5.82!BCL6B;;chr11:125034586..125034604,+!p3@PKNOX2!0.83!5.82!PKNOX2;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.82!SOX6;;chr11:34535297..34535317,-!p1@ELF5!0.83!5.82!ELF5;;chr11:71955210..71955227,-!p1@PHOX2A!0.83!5.82!PHOX2A;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.82!FOXA1;;chr3:114819101..114819121,-!p7@ZBTB20!0.83!5.82!ZBTB20;;chr3:141043050..141043063,+!p22@ZBTB38!0.83!5.82!ZBTB38;;chr7:27170274..27170308,-!p3@HOXA4!0.83!5.82!HOXA4;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!0.83!5.82!IKZF1;;chr10:35484053..35484076,+!p1@C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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg38.nobarcode.ctss.bed.gz
|id=FF:10063-101H9
|is_a=EFO:0002091;;FF:0010063
|is_obsolete=
|library_id=CNhs11772!CNhs12996
|library_id_phase_based=2:CNhs12996
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10063
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10063
|name=temporal lobe, fetal, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11772 & CNhs12996,LSID820,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.153138668363065,0,0.558906195697881,0.58125992045901,0,0,0,0.184415109078388,0,0,0,0,0,0,0,0,0,0.160133688101024,0,0,0,0,0,0.314852049850485,0,0,0.539435738570506,0,0,0,0,0,0,0,0,0,0,0.184415109078388,0,0.309035770105126,0.313456698449451,0,0,0,0,0,0,0,-0.0242150211128343,0,0.0242234416815272,0,0,0,0.0410639094477264,0.184415109078388,0.0874227478357833,0,0,0.0870714818652914,0,0,0,0,0,0,0,0,0.313456698449451,0,0,0,0,0,0,0,0.0170225752628867,0,0.092207554539194,0,0,0,0,0.0455015822156712,0.199583743784558,0.339013760738378,0.184415109078388,0.0896130880872471,0.0918326172908954,0.305492170636263,0.092207554539194,0.412809946118542,0.092207554539194,0,0.086379757840682,0.323827198789748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283884448706436,0,0,0,0.433820030808007,0.747103756678948,0.184415109078388,0,0.0248387220359314,0,0,0
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|rna_box=101
|rna_catalog_number=Cat:RtHFN: Brain temporal lobe
|rna_concentration=2.5
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=A702181
|rna_od260/230=
|rna_od260/280=
|rna_position=H9
|rna_rin=7.1
|rna_sample_type=total RNA
|rna_tube_id=101H9
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Biochain
|sample_description=
|sample_dev_stage=22 weeks fetus
|sample_disease=normal
|sample_donor(cell lot)=1
|sample_ethnicity=A?
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.19379541418768e-251!GO:0005737;cytoplasm;1.80673840108635e-169!GO:0043226;organelle;2.286973712112e-113!GO:0043229;intracellular organelle;4.18084112962639e-113!GO:0044444;cytoplasmic part;2.31958271387102e-111!GO:0043227;membrane-bound organelle;3.16835956566826e-106!GO:0043231;intracellular membrane-bound organelle;3.58230995804835e-106!GO:0005515;protein binding;6.30308996709508e-87!GO:0044422;organelle part;2.04515724153827e-79!GO:0044446;intracellular organelle part;6.12799905195391e-78!GO:0032991;macromolecular complex;6.71463800207869e-54!GO:0044238;primary metabolic process;2.45151763016378e-52!GO:0044237;cellular metabolic process;5.27386924166368e-51!GO:0030529;ribonucleoprotein complex;3.8805540900259e-45!GO:0043170;macromolecule metabolic process;2.35386171684865e-44!GO:0003723;RNA binding;2.13207933784638e-40!GO:0043233;organelle lumen;5.12940374468456e-40!GO:0031974;membrane-enclosed lumen;5.12940374468456e-40!GO:0019538;protein metabolic process;7.98984123344461e-40!GO:0031090;organelle membrane;2.17685860280618e-39!GO:0016043;cellular component organization and biogenesis;2.19625573339592e-39!GO:0005739;mitochondrion;6.21194029248645e-39!GO:0044428;nuclear part;6.49660764770318e-36!GO:0033036;macromolecule localization;8.00462037868618e-36!GO:0044260;cellular macromolecule metabolic process;1.68817976834161e-34!GO:0044267;cellular protein metabolic process;4.22858680311529e-34!GO:0008104;protein localization;3.62059417511564e-33!GO:0045184;establishment of protein localization;1.08628952562734e-32!GO:0015031;protein transport;2.24399999085053e-32!GO:0005829;cytosol;4.58309612804909e-29!GO:0044429;mitochondrial part;6.84034663275636e-28!GO:0031967;organelle envelope;1.23866818302896e-27!GO:0043234;protein complex;1.24972221352462e-27!GO:0031975;envelope;2.08470602373296e-27!GO:0005840;ribosome;2.19488921512826e-27!GO:0005634;nucleus;1.52533285310126e-26!GO:0016071;mRNA metabolic process;8.01602219025334e-26!GO:0046907;intracellular transport;2.12162502094571e-25!GO:0006412;translation;8.07351115856309e-25!GO:0003735;structural constituent of ribosome;2.10071894562522e-24!GO:0009059;macromolecule biosynthetic process;3.55075260036362e-24!GO:0008380;RNA splicing;4.45857093232169e-24!GO:0065003;macromolecular complex assembly;1.03140944854423e-22!GO:0033279;ribosomal subunit;1.59624789448362e-22!GO:0006396;RNA processing;2.52010842882285e-22!GO:0009058;biosynthetic process;5.7481327916634e-22!GO:0006397;mRNA processing;1.88371124638178e-21!GO:0006886;intracellular protein transport;1.89380453446965e-21!GO:0031981;nuclear lumen;4.35790765395035e-21!GO:0022607;cellular component assembly;1.25060138760118e-20!GO:0051641;cellular localization;2.00113864385819e-20!GO:0051649;establishment of cellular localization;4.47563019514894e-20!GO:0019866;organelle inner membrane;5.92514317920159e-20!GO:0005740;mitochondrial envelope;3.32452571370415e-19!GO:0031966;mitochondrial membrane;6.74704363976233e-19!GO:0005743;mitochondrial inner membrane;1.31651030928065e-18!GO:0005794;Golgi apparatus;2.73086246078243e-18!GO:0006996;organelle organization and biogenesis;4.44376413143376e-18!GO:0044249;cellular biosynthetic process;5.96514755153294e-18!GO:0005783;endoplasmic reticulum;7.33757337815496e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.59925742567997e-18!GO:0012505;endomembrane system;1.26926749555552e-17!GO:0006119;oxidative phosphorylation;1.36075206900932e-17!GO:0008134;transcription factor binding;2.0095304861162e-17!GO:0016192;vesicle-mediated transport;1.31859598743716e-16!GO:0043283;biopolymer metabolic process;4.01108569977916e-16!GO:0005681;spliceosome;5.09851568027432e-16!GO:0048770;pigment granule;3.04977032758123e-15!GO:0042470;melanosome;3.04977032758123e-15!GO:0043228;non-membrane-bound organelle;3.3154428208414e-15!GO:0043232;intracellular non-membrane-bound organelle;3.3154428208414e-15!GO:0044445;cytosolic part;5.79252395522947e-15!GO:0031982;vesicle;5.10610881442286e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.44144876702696e-14!GO:0044455;mitochondrial membrane part;5.61181436576263e-14!GO:0010467;gene expression;6.16452021865356e-14!GO:0031410;cytoplasmic vesicle;1.45247288714595e-13!GO:0005654;nucleoplasm;2.95327988642978e-13!GO:0005746;mitochondrial respiratory chain;4.16336905330694e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.16336905330694e-13!GO:0003954;NADH dehydrogenase activity;4.16336905330694e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.16336905330694e-13!GO:0048193;Golgi vesicle transport;7.86940665355166e-13!GO:0000166;nucleotide binding;1.60800779049518e-12!GO:0044432;endoplasmic reticulum part;2.43723436518674e-12!GO:0044265;cellular macromolecule catabolic process;2.71680211927442e-12!GO:0031980;mitochondrial lumen;6.4840518114418e-12!GO:0005759;mitochondrial matrix;6.4840518114418e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.17901558029387e-12!GO:0015935;small ribosomal subunit;8.2747965698444e-12!GO:0015934;large ribosomal subunit;1.39058498094398e-11!GO:0044451;nucleoplasm part;1.89103417193019e-11!GO:0044248;cellular catabolic process;2.81261362556234e-11!GO:0003712;transcription cofactor activity;2.83049014291085e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.60727645053264e-11!GO:0045271;respiratory chain complex I;4.60727645053264e-11!GO:0005747;mitochondrial respiratory chain complex I;4.60727645053264e-11!GO:0031988;membrane-bound vesicle;5.24330274810289e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.7181243186086e-11!GO:0042773;ATP synthesis coupled electron transport;6.7181243186086e-11!GO:0006457;protein folding;1.2430743059706e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.3476927375003e-10!GO:0016023;cytoplasmic membrane-bound vesicle;1.45251631123925e-10!GO:0048523;negative regulation of cellular process;1.5786749037783e-10!GO:0022618;protein-RNA complex assembly;1.92168767822955e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.31660561305014e-10!GO:0030036;actin cytoskeleton organization and biogenesis;3.75601180236773e-10!GO:0044257;cellular protein catabolic process;4.09018060314293e-10!GO:0016462;pyrophosphatase activity;4.2110064787544e-10!GO:0005793;ER-Golgi intermediate compartment;4.87782476769951e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.76582270142656e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;6.42267078997926e-10!GO:0006461;protein complex assembly;8.34093555485423e-10!GO:0000502;proteasome complex (sensu Eukaryota);8.68341250048417e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;8.78264847236791e-10!GO:0043285;biopolymer catabolic process;9.79278095143378e-10!GO:0019941;modification-dependent protein catabolic process;9.79278095143378e-10!GO:0043632;modification-dependent macromolecule catabolic process;9.79278095143378e-10!GO:0009057;macromolecule catabolic process;9.93172578011445e-10!GO:0006605;protein targeting;1.10989462855202e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.1477754073723e-09!GO:0006366;transcription from RNA polymerase II promoter;1.28916798351987e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.76420452995777e-09!GO:0009055;electron carrier activity;1.82950678786354e-09!GO:0012501;programmed cell death;2.11601882616677e-09!GO:0008092;cytoskeletal protein binding;2.27192262501365e-09!GO:0006915;apoptosis;2.56429801450096e-09!GO:0009056;catabolic process;2.78122050492686e-09!GO:0043412;biopolymer modification;3.99911864735538e-09!GO:0008219;cell death;4.11824256656496e-09!GO:0016265;death;4.11824256656496e-09!GO:0017111;nucleoside-triphosphatase activity;4.20826441602573e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.69324920305685e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;7.076621618366e-09!GO:0000375;RNA splicing, via transesterification reactions;7.076621618366e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.076621618366e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.73728975679553e-09!GO:0051082;unfolded protein binding;8.79833668827941e-09!GO:0006464;protein modification process;8.95583036711321e-09!GO:0005635;nuclear envelope;9.07701524633687e-09!GO:0048519;negative regulation of biological process;9.5514616574698e-09!GO:0016604;nuclear body;1.23628032949705e-08!GO:0016874;ligase activity;1.30265066602611e-08!GO:0030163;protein catabolic process;1.54358226777284e-08!GO:0030029;actin filament-based process;1.89109887865225e-08!GO:0008565;protein transporter activity;1.94082370133689e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.07403772085482e-08!GO:0005789;endoplasmic reticulum membrane;3.13220261375248e-08!GO:0032553;ribonucleotide binding;3.58603092167604e-08!GO:0032555;purine ribonucleotide binding;3.58603092167604e-08!GO:0006793;phosphorus metabolic process;6.50049499411386e-08!GO:0006796;phosphate metabolic process;6.50049499411386e-08!GO:0016607;nuclear speck;6.77882381101752e-08!GO:0017076;purine nucleotide binding;6.96008308230184e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.54835019350049e-08!GO:0008135;translation factor activity, nucleic acid binding;1.05915208656551e-07!GO:0051186;cofactor metabolic process;1.11794582244562e-07!GO:0006913;nucleocytoplasmic transport;1.17463668189105e-07!GO:0016564;transcription repressor activity;1.33438232042547e-07!GO:0006446;regulation of translational initiation;1.76621062215395e-07!GO:0031965;nuclear membrane;2.54410306482178e-07!GO:0005761;mitochondrial ribosome;2.60473418674717e-07!GO:0000313;organellar ribosome;2.60473418674717e-07!GO:0019829;cation-transporting ATPase activity;2.61830368929666e-07!GO:0051169;nuclear transport;2.71930101363451e-07!GO:0009060;aerobic respiration;3.94343463552524e-07!GO:0006259;DNA metabolic process;4.08051474591707e-07!GO:0005730;nucleolus;5.12963318771269e-07!GO:0003779;actin binding;5.32507652681904e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.70683740055088e-07!GO:0031252;leading edge;5.78541443932085e-07!GO:0045333;cellular respiration;8.12771601289944e-07!GO:0050794;regulation of cellular process;9.06506769654875e-07!GO:0016310;phosphorylation;9.06506769654875e-07!GO:0030120;vesicle coat;9.73423073258104e-07!GO:0030662;coated vesicle membrane;9.73423073258104e-07!GO:0043687;post-translational protein modification;1.12435299149007e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.13464868433465e-06!GO:0007010;cytoskeleton organization and biogenesis;1.42674536908104e-06!GO:0003714;transcription corepressor activity;1.80829426477338e-06!GO:0006512;ubiquitin cycle;1.88828420544639e-06!GO:0005773;vacuole;2.17406577634338e-06!GO:0048475;coated membrane;2.25216064892081e-06!GO:0030117;membrane coat;2.25216064892081e-06!GO:0050789;regulation of biological process;2.27466539252059e-06!GO:0016563;transcription activator activity;2.30198036783292e-06!GO:0044431;Golgi apparatus part;3.03694803796581e-06!GO:0008639;small protein conjugating enzyme activity;3.12788432923765e-06!GO:0006099;tricarboxylic acid cycle;3.26306754142489e-06!GO:0046356;acetyl-CoA catabolic process;3.26306754142489e-06!GO:0004842;ubiquitin-protein ligase activity;3.73521147842259e-06!GO:0019899;enzyme binding;3.76363797366879e-06!GO:0006732;coenzyme metabolic process;3.87109089063234e-06!GO:0003743;translation initiation factor activity;4.04256083929343e-06!GO:0007264;small GTPase mediated signal transduction;4.12353608085871e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.28892030484316e-06!GO:0015986;ATP synthesis coupled proton transport;4.89711202174213e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.89711202174213e-06!GO:0005768;endosome;5.00136017003736e-06!GO:0006413;translational initiation;6.41946816742521e-06!GO:0005788;endoplasmic reticulum lumen;6.43063107792886e-06!GO:0032559;adenyl ribonucleotide binding;8.26713513357967e-06!GO:0005524;ATP binding;8.26713513357967e-06!GO:0051187;cofactor catabolic process;8.43404331298597e-06!GO:0045259;proton-transporting ATP synthase complex;1.0870740985939e-05!GO:0016887;ATPase activity;1.214716696209e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.35664819601716e-05!GO:0051246;regulation of protein metabolic process;1.42284378541378e-05!GO:0042623;ATPase activity, coupled;1.52187698699228e-05!GO:0019787;small conjugating protein ligase activity;1.61300217065837e-05!GO:0030554;adenyl nucleotide binding;1.77882338586126e-05!GO:0003713;transcription coactivator activity;1.84254713662278e-05!GO:0045893;positive regulation of transcription, DNA-dependent;1.87711328916562e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.93244075295501e-05!GO:0048522;positive regulation of cellular process;1.93590444171493e-05!GO:0009892;negative regulation of metabolic process;1.99046765597992e-05!GO:0005083;small GTPase regulator activity;2.01550466502031e-05!GO:0017038;protein import;2.09982213547283e-05!GO:0044453;nuclear membrane part;2.13697811392586e-05!GO:0006084;acetyl-CoA metabolic process;2.25797177201075e-05!GO:0000323;lytic vacuole;2.43732601477578e-05!GO:0005764;lysosome;2.43732601477578e-05!GO:0042802;identical protein binding;2.456630263244e-05!GO:0031324;negative regulation of cellular metabolic process;2.71420019363857e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.91641322207732e-05!GO:0007265;Ras protein signal transduction;3.05265574735845e-05!GO:0003676;nucleic acid binding;3.14102820540048e-05!GO:0009109;coenzyme catabolic process;3.14102820540048e-05!GO:0043566;structure-specific DNA binding;3.37865032033314e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.81396422469957e-05!GO:0016787;hydrolase activity;4.04294667070322e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.07458928831207e-05!GO:0042981;regulation of apoptosis;5.01972835772697e-05!GO:0045941;positive regulation of transcription;5.01972835772697e-05!GO:0048518;positive regulation of biological process;6.17809407004775e-05!GO:0000245;spliceosome assembly;6.29747418050857e-05!GO:0043067;regulation of programmed cell death;6.77039522145893e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.77039522145893e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.87120663198904e-05!GO:0043069;negative regulation of programmed cell death;7.12791268769274e-05!GO:0004298;threonine endopeptidase activity;7.1760922221196e-05!GO:0016070;RNA metabolic process;7.27337450868032e-05!GO:0016481;negative regulation of transcription;7.53446073241348e-05!GO:0032940;secretion by cell;7.65391609571641e-05!GO:0006613;cotranslational protein targeting to membrane;7.67189178631735e-05!GO:0030695;GTPase regulator activity;7.8754442419965e-05!GO:0009150;purine ribonucleotide metabolic process;8.29394740232848e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.40887021546135e-05!GO:0045045;secretory pathway;0.000100815558184675!GO:0043066;negative regulation of apoptosis;0.000100839852147495!GO:0006323;DNA packaging;0.000111861906952302!GO:0006754;ATP biosynthetic process;0.000113735251295408!GO:0006753;nucleoside phosphate metabolic process;0.000113735251295408!GO:0003702;RNA polymerase II transcription factor activity;0.000114450829973633!GO:0000139;Golgi membrane;0.000118395641632872!GO:0048471;perinuclear region of cytoplasm;0.000119870891440398!GO:0009152;purine ribonucleotide biosynthetic process;0.000122895296823589!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000127059312138759!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000127059312138759!GO:0008154;actin polymerization and/or depolymerization;0.000141963587184143!GO:0009142;nucleoside triphosphate biosynthetic process;0.000146081633278534!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000146081633278534!GO:0006163;purine nucleotide metabolic process;0.000146648835572757!GO:0009259;ribonucleotide metabolic process;0.000151345338533212!GO:0009141;nucleoside triphosphate metabolic process;0.000153454481289145!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000155882019683386!GO:0009144;purine nucleoside triphosphate metabolic process;0.000155882019683386!GO:0007049;cell cycle;0.00015679490316763!GO:0006333;chromatin assembly or disassembly;0.000160994942001234!GO:0009199;ribonucleoside triphosphate metabolic process;0.000171913233749503!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000176086632080038!GO:0046034;ATP metabolic process;0.000186093791089857!GO:0016044;membrane organization and biogenesis;0.000187155204813763!GO:0005770;late endosome;0.00018911217260144!GO:0005798;Golgi-associated vesicle;0.000193685314423833!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000198447523377151!GO:0015399;primary active transmembrane transporter activity;0.000198447523377151!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000220125401130227!GO:0003697;single-stranded DNA binding;0.000220891531553776!GO:0050657;nucleic acid transport;0.00022472310166184!GO:0051236;establishment of RNA localization;0.00022472310166184!GO:0050658;RNA transport;0.00022472310166184!GO:0006164;purine nucleotide biosynthetic process;0.000225200139775444!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000227155230298563!GO:0006403;RNA localization;0.00024522770544826!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000262918320240536!GO:0006606;protein import into nucleus;0.000265044050614723!GO:0065007;biological regulation;0.000265044050614723!GO:0051170;nuclear import;0.000271182196677652!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00027324117493175!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000279300300476411!GO:0007243;protein kinase cascade;0.000284102027594953!GO:0051128;regulation of cellular component organization and biogenesis;0.000299264443888025!GO:0005643;nuclear pore;0.000302197880724519!GO:0016881;acid-amino acid ligase activity;0.000360105097356745!GO:0044255;cellular lipid metabolic process;0.000360264361077791!GO:0009260;ribonucleotide biosynthetic process;0.000395033102353493!GO:0015980;energy derivation by oxidation of organic compounds;0.000430337420889405!GO:0005525;GTP binding;0.000430337420889405!GO:0051276;chromosome organization and biogenesis;0.000432387474548991!GO:0045786;negative regulation of progression through cell cycle;0.000444088743298822!GO:0000785;chromatin;0.000456789401062765!GO:0030867;rough endoplasmic reticulum membrane;0.000507067327636554!GO:0046930;pore complex;0.000532229579350306!GO:0006916;anti-apoptosis;0.000561487654509232!GO:0003924;GTPase activity;0.000576880810765917!GO:0044440;endosomal part;0.000576880810765917!GO:0010008;endosome membrane;0.000576880810765917!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000667536167550718!GO:0004812;aminoacyl-tRNA ligase activity;0.000667536167550718!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000667536167550718!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000667536167550718!GO:0043492;ATPase activity, coupled to movement of substances;0.000677195915327227!GO:0004386;helicase activity;0.000740638428005875!GO:0001726;ruffle;0.000804700199324427!GO:0006629;lipid metabolic process;0.000890735955641064!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000913710419434207!GO:0009966;regulation of signal transduction;0.000947548834679081!GO:0065004;protein-DNA complex assembly;0.000965197759558823!GO:0016197;endosome transport;0.000975307289448678!GO:0003724;RNA helicase activity;0.00107347440436194!GO:0008047;enzyme activator activity;0.00109018147077016!GO:0043038;amino acid activation;0.0011571507797285!GO:0006418;tRNA aminoacylation for protein translation;0.0011571507797285!GO:0043039;tRNA aminoacylation;0.0011571507797285!GO:0008250;oligosaccharyl transferase complex;0.00116412285722782!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00116879416829138!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118302077363694!GO:0005791;rough endoplasmic reticulum;0.00118812712909785!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00121201228363081!GO:0006066;alcohol metabolic process;0.00123716654328592!GO:0007266;Rho protein signal transduction;0.00126985691713595!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00127584043696767!GO:0006334;nucleosome assembly;0.0013008134583465!GO:0051427;hormone receptor binding;0.00132705062150266!GO:0003729;mRNA binding;0.00136483944754881!GO:0065002;intracellular protein transport across a membrane;0.00136952043654539!GO:0051726;regulation of cell cycle;0.00140571810143125!GO:0000074;regulation of progression through cell cycle;0.00141791091568743!GO:0032561;guanyl ribonucleotide binding;0.00142673819381336!GO:0019001;guanyl nucleotide binding;0.00142673819381336!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00142673819381336!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00142673819381336!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00142673819381336!GO:0004576;oligosaccharyl transferase activity;0.00142997940909168!GO:0030133;transport vesicle;0.00146406359690424!GO:0007242;intracellular signaling cascade;0.0015005379570091!GO:0030027;lamellipodium;0.00151683810864959!GO:0032446;protein modification by small protein conjugation;0.00152080630574594!GO:0005905;coated pit;0.00161704100608645!GO:0043623;cellular protein complex assembly;0.00163382423595347!GO:0051920;peroxiredoxin activity;0.00180630305722255!GO:0051028;mRNA transport;0.00180706031310638!GO:0022890;inorganic cation transmembrane transporter activity;0.0018314135903879!GO:0006091;generation of precursor metabolites and energy;0.00189019999653327!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00191149276432112!GO:0051789;response to protein stimulus;0.00191670969056933!GO:0006986;response to unfolded protein;0.00191670969056933!GO:0005885;Arp2/3 protein complex;0.00215088715162248!GO:0000151;ubiquitin ligase complex;0.00218278268933586!GO:0003690;double-stranded DNA binding;0.00218278268933586!GO:0016491;oxidoreductase activity;0.00221420871699931!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00222770225592369!GO:0006487;protein amino acid N-linked glycosylation;0.00223651700280338!GO:0043021;ribonucleoprotein binding;0.00233935884042902!GO:0035257;nuclear hormone receptor binding;0.00235669129804173!GO:0051188;cofactor biosynthetic process;0.0024325591073245!GO:0016853;isomerase activity;0.00245281991432709!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00248586797280368!GO:0051287;NAD binding;0.00248679165236384!GO:0012506;vesicle membrane;0.00250757382883655!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00259567807026524!GO:0030658;transport vesicle membrane;0.00262015869093662!GO:0046983;protein dimerization activity;0.00265636535985991!GO:0015629;actin cytoskeleton;0.00265636535985991!GO:0006612;protein targeting to membrane;0.00271053863709074!GO:0033116;ER-Golgi intermediate compartment membrane;0.00271053863709074!GO:0005762;mitochondrial large ribosomal subunit;0.00279601277846834!GO:0000315;organellar large ribosomal subunit;0.00279601277846834!GO:0045892;negative regulation of transcription, DNA-dependent;0.00281176563238205!GO:0006897;endocytosis;0.00286496231767775!GO:0010324;membrane invagination;0.00286496231767775!GO:0016363;nuclear matrix;0.00294025378215175!GO:0016567;protein ubiquitination;0.00309206089528809!GO:0048468;cell development;0.00310859708516591!GO:0019904;protein domain specific binding;0.00317693383134299!GO:0008654;phospholipid biosynthetic process;0.00321803095322815!GO:0030134;ER to Golgi transport vesicle;0.00324407719165941!GO:0030127;COPII vesicle coat;0.00352262828634655!GO:0012507;ER to Golgi transport vesicle membrane;0.00352262828634655!GO:0006752;group transfer coenzyme metabolic process;0.00360862911817242!GO:0006891;intra-Golgi vesicle-mediated transport;0.0036572942992328!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00372316504210652!GO:0030118;clathrin coat;0.00384627240597831!GO:0005667;transcription factor complex;0.0040214325779548!GO:0044433;cytoplasmic vesicle part;0.00407223834379912!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00410238661486325!GO:0044262;cellular carbohydrate metabolic process;0.00413444974383513!GO:0031497;chromatin assembly;0.00414640619458557!GO:0016568;chromatin modification;0.00417855839281104!GO:0042254;ribosome biogenesis and assembly;0.00444029165940642!GO:0051179;localization;0.00468923120843695!GO:0030659;cytoplasmic vesicle membrane;0.00503342730960843!GO:0005769;early endosome;0.00521307053316018!GO:0030041;actin filament polymerization;0.00527877173936997!GO:0016740;transferase activity;0.00530212166850822!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00549908331125727!GO:0008026;ATP-dependent helicase activity;0.00583285412860757!GO:0006974;response to DNA damage stimulus;0.00620231781935977!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00631253619246433!GO:0009108;coenzyme biosynthetic process;0.00636399388323132!GO:0006082;organic acid metabolic process;0.00639021337858282!GO:0006402;mRNA catabolic process;0.00701346875488436!GO:0016859;cis-trans isomerase activity;0.00701346875488436!GO:0001666;response to hypoxia;0.00701950237138969!GO:0051017;actin filament bundle formation;0.00711067239976095!GO:0030663;COPI coated vesicle membrane;0.00720052302153585!GO:0030126;COPI vesicle coat;0.00720052302153585!GO:0035258;steroid hormone receptor binding;0.00720052302153585!GO:0019843;rRNA binding;0.00733327256782243!GO:0007015;actin filament organization;0.00736773256777586!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00736773256777586!GO:0009893;positive regulation of metabolic process;0.00762355887112161!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00782054375193993!GO:0051674;localization of cell;0.00788349851865988!GO:0006928;cell motility;0.00788349851865988!GO:0030660;Golgi-associated vesicle membrane;0.00788349851865988!GO:0019752;carboxylic acid metabolic process;0.00814141658138158!GO:0008186;RNA-dependent ATPase activity;0.00826912984762231!GO:0005096;GTPase activator activity;0.00855712022122483!GO:0005938;cell cortex;0.00861545412300717!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00883792725285752!GO:0017040;ceramidase activity;0.00891320543058855!GO:0015630;microtubule cytoskeleton;0.00891895607047112!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00897162650022383!GO:0033043;regulation of organelle organization and biogenesis;0.00897162650022383!GO:0009719;response to endogenous stimulus;0.00903197948205432!GO:0018196;peptidyl-asparagine modification;0.00903197948205432!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00903197948205432!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0097512412756295!GO:0009100;glycoprotein metabolic process;0.0100492603524979!GO:0017166;vinculin binding;0.0102891930116812!GO:0048500;signal recognition particle;0.0104658491416519!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0106472265982387!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0107116656611533!GO:0060090;molecular adaptor activity;0.0107652074052757!GO:0005048;signal sequence binding;0.0109459021557713!GO:0051252;regulation of RNA metabolic process;0.0110210379324422!GO:0045454;cell redox homeostasis;0.0113247025669354!GO:0005996;monosaccharide metabolic process;0.0114561506657539!GO:0019318;hexose metabolic process;0.0114852602956183!GO:0006892;post-Golgi vesicle-mediated transport;0.0115210699464417!GO:0004177;aminopeptidase activity;0.0118354948377024!GO:0006401;RNA catabolic process;0.0121709240162834!GO:0004364;glutathione transferase activity;0.0121866337797068!GO:0006950;response to stress;0.0125218982093401!GO:0008139;nuclear localization sequence binding;0.0127210473466836!GO:0006508;proteolysis;0.0133829541398608!GO:0007005;mitochondrion organization and biogenesis;0.0135842016359327!GO:0005975;carbohydrate metabolic process;0.0138856690681828!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0138856690681828!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0138856690681828!GO:0030137;COPI-coated vesicle;0.0140097222924049!GO:0016584;nucleosome positioning;0.0140325581301245!GO:0009117;nucleotide metabolic process;0.0147550345112683!GO:0005813;centrosome;0.0148474164305213!GO:0022402;cell cycle process;0.0155193892968146!GO:0006869;lipid transport;0.0155193892968146!GO:0043488;regulation of mRNA stability;0.0155193892968146!GO:0043487;regulation of RNA stability;0.0155193892968146!GO:0006509;membrane protein ectodomain proteolysis;0.0168509565678624!GO:0033619;membrane protein proteolysis;0.0168509565678624!GO:0033673;negative regulation of kinase activity;0.0170230847370459!GO:0006469;negative regulation of protein kinase activity;0.0170230847370459!GO:0051168;nuclear export;0.017285590822355!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0174820733052842!GO:0051270;regulation of cell motility;0.0177421943320188!GO:0006607;NLS-bearing substrate import into nucleus;0.0187294684848691!GO:0032535;regulation of cellular component size;0.0190739446245164!GO:0030832;regulation of actin filament length;0.0192195719497859!GO:0006414;translational elongation;0.0196965243796146!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0205312732668755!GO:0005912;adherens junction;0.0206510184876927!GO:0004004;ATP-dependent RNA helicase activity;0.020715290174238!GO:0006595;polyamine metabolic process;0.0207266123351767!GO:0005070;SH3/SH2 adaptor activity;0.0216558996234381!GO:0004197;cysteine-type endopeptidase activity;0.0216558996234381!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0218562715351278!GO:0031325;positive regulation of cellular metabolic process;0.0218675299585372!GO:0051101;regulation of DNA binding;0.0223091698137605!GO:0005815;microtubule organizing center;0.0225242179229365!GO:0030132;clathrin coat of coated pit;0.022601844879023!GO:0030139;endocytic vesicle;0.0249200323381861!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0249200323381861!GO:0045047;protein targeting to ER;0.0249200323381861!GO:0030100;regulation of endocytosis;0.0249661281673445!GO:0051539;4 iron, 4 sulfur cluster binding;0.0250201609225144!GO:0000314;organellar small ribosomal subunit;0.0251006347970718!GO:0005763;mitochondrial small ribosomal subunit;0.0251006347970718!GO:0019867;outer membrane;0.0261609215288353!GO:0001725;stress fiber;0.0263899810487074!GO:0032432;actin filament bundle;0.0263899810487074!GO:0005694;chromosome;0.0264581043033016!GO:0043034;costamere;0.0267935040088122!GO:0031968;organelle outer membrane;0.0268294224449619!GO:0005774;vacuolar membrane;0.0268294224449619!GO:0006260;DNA replication;0.0280875998814599!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0284305264120026!GO:0008022;protein C-terminus binding;0.0289160036867168!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0291838628639929!GO:0030031;cell projection biogenesis;0.0293163203156743!GO:0006643;membrane lipid metabolic process;0.029347968004999!GO:0050662;coenzyme binding;0.029875041862504!GO:0006644;phospholipid metabolic process;0.030549252501055!GO:0007167;enzyme linked receptor protein signaling pathway;0.030549252501055!GO:0008601;protein phosphatase type 2A regulator activity;0.0307803837272865!GO:0005741;mitochondrial outer membrane;0.0314542087318832!GO:0005586;collagen type III;0.0316108821845211!GO:0016301;kinase activity;0.0317728911101448!GO:0003756;protein disulfide isomerase activity;0.0327435045862542!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0327435045862542!GO:0007039;vacuolar protein catabolic process;0.0328628571735552!GO:0006518;peptide metabolic process;0.0329454811924882!GO:0008147;structural constituent of bone;0.0332634886346788!GO:0043681;protein import into mitochondrion;0.0333731961382822!GO:0004185;serine carboxypeptidase activity;0.0336921002982958!GO:0005684;U2-dependent spliceosome;0.0337799543677211!GO:0009101;glycoprotein biosynthetic process;0.0345298374339441!GO:0040011;locomotion;0.0345368966150049!GO:0051348;negative regulation of transferase activity;0.0350825786107787!GO:0050425;carboxypeptidase B activity;0.0353934657625055!GO:0044420;extracellular matrix part;0.036586764396899!GO:0016791;phosphoric monoester hydrolase activity;0.0366337409518613!GO:0006376;mRNA splice site selection;0.0366337409518613!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0366337409518613!GO:0051087;chaperone binding;0.0367631622984232!GO:0003746;translation elongation factor activity;0.0382915365526056!GO:0051235;maintenance of localization;0.0384184245209108!GO:0031529;ruffle organization and biogenesis;0.0385815917195667!GO:0030521;androgen receptor signaling pathway;0.0385815917195667!GO:0040012;regulation of locomotion;0.0390034793200618!GO:0030119;AP-type membrane coat adaptor complex;0.0398896607788196!GO:0015631;tubulin binding;0.0399690674701394!GO:0044427;chromosomal part;0.0416304059801644!GO:0030135;coated vesicle;0.042363276004372!GO:0005637;nuclear inner membrane;0.0434411797263232!GO:0008312;7S RNA binding;0.0436640425710898!GO:0006979;response to oxidative stress;0.0440690626236193!GO:0022415;viral reproductive process;0.0442730276596055!GO:0051056;regulation of small GTPase mediated signal transduction;0.0452720714100011!GO:0001889;liver development;0.0457335807698817!GO:0016408;C-acyltransferase activity;0.0457335807698817!GO:0006693;prostaglandin metabolic process;0.0457335807698817!GO:0006692;prostanoid metabolic process;0.0457335807698817!GO:0019208;phosphatase regulator activity;0.0457782206407145!GO:0003988;acetyl-CoA C-acyltransferase activity;0.045800546788478!GO:0008287;protein serine/threonine phosphatase complex;0.0468329043580025!GO:0030032;lamellipodium biogenesis;0.0474045042881467!GO:0006635;fatty acid beta-oxidation;0.0475256898910724!GO:0046903;secretion;0.0480730086316426!GO:0005099;Ras GTPase activator activity;0.0491570624439978!GO:0030131;clathrin adaptor complex;0.0498545248210836!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0499677949329744
|sample_id=10063
|sample_note=/
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=temporal lobe
|top_motifs=HNF4A_NR2F1,2:4.8139725593;HNF1A:4.52657227328;RBPJ:3.28359189676;GATA6:3.20948155865;RXRA_VDR{dimer}:3.0707707838;DBP:2.61315944344;SPZ1:2.5774105518;IKZF2:2.46787343628;NR6A1:2.460559289;ONECUT1,2:2.41081781134;TBP:2.28886185678;ALX1:2.27681816163;TLX2:2.25874297633;FOXA2:2.24589502184;NR5A1,2:2.20813494636;SNAI1..3:2.10453064775;LMO2:1.96785794989;RREB1:1.91104531448;MYBL2:1.84250374687;MYFfamily:1.83864234287;ZEB1:1.79368328248;FOXM1:1.70699565802;MYOD1:1.67623212333;ATF6:1.58854918476;EN1,2:1.50519514369;MTF1:1.38925572745;HMX1:1.38741212885;GCM1,2:1.36615770919;SRF:1.32703671068;MAZ:1.32446408081;FOXD3:1.30564058527;TFAP4:1.29964819945;POU6F1:1.22864659931;EP300:1.22797503583;HIC1:1.13771342987;T:1.13018391093;PAX3,7:1.12869529896;TFCP2:1.11878430121;MZF1:1.11290969007;FOX{F1,F2,J1}:1.09980223275;PBX1:1.08956008632;PRDM1:1.08124584122;ZNF384:1.06312633093;TAL1_TCF{3,4,12}:1.04962036554;FOXP1:1.04820924314;UFEwm:1.01457645862;NKX2-3_NKX2-5:1.00751657632;SP1:1.00696196263;FOXO1,3,4:0.982030114867;GTF2I:0.974287139375;HMGA1,2:0.967358569044;ZNF148:0.947732678454;NKX3-2:0.937203345918;PDX1:0.930715502283;HAND1,2:0.92527919678;KLF4:0.921802293617;PATZ1:0.912298201655;MTE{core}:0.904552488611;XCPE1{core}:0.895199072397;ESR1:0.887665941543;XBP1:0.875834470836;MED-1{core}:0.870390437979;GZF1:0.839984806505;FOX{D1,D2}:0.83640550544;GLI1..3:0.793539738007;CDX1,2,4:0.772242890889;REST:0.763874278788;TLX1..3_NFIC{dimer}:0.762519503263;POU3F1..4:0.755451261333;STAT1,3:0.744804058129;ZNF238:0.735102765771;IRF7:0.713960632855;GATA4:0.683502435322;NKX2-1,4:0.678925854451;NHLH1,2:0.649201158711;IRF1,2:0.584928722677;PAX5:0.572433560976;IKZF1:0.563021120144;NKX6-1,2:0.527531908901;TFAP2{A,C}:0.508680487363;CDC5L:0.502725986668;PITX1..3:0.499783838121;GFI1B:0.4942470263;ZNF423:0.484907900698;NR3C1:0.475552790028;ZBTB16:0.457696830979;BREu{core}:0.453864097533;POU5F1:0.444623083773;HOX{A6,A7,B6,B7}:0.424267399641;SOX5:0.422764137178;FOXN1:0.416980626307;TFAP2B:0.411696119812;HOXA9_MEIS1:0.388071682767;EGR1..3:0.372564073015;SMAD1..7,9:0.36156613472;POU1F1:0.342620566042;TBX4,5:0.300202594997;DMAP1_NCOR{1,2}_SMARC:0.283196194455;SOX2:0.281584549705;LHX3,4:0.279935880441;EBF1:0.270920694271;ETS1,2:0.270427536719;ZFP161:0.260023366034;MAFB:0.211428806536;NANOG{mouse}:0.193228192275;ZBTB6:0.186931543035;ALX4:0.183107958309;TEAD1:0.180858011192;ESRRA:0.174035263611;ADNP_IRX_SIX_ZHX:0.168718035641;VSX1,2:0.156580862365;ARID5B:0.141456295235;NKX2-2,8:0.137815940654;NKX3-1:0.133462306859;FOXL1:0.124230744418;NR1H4:0.0819785235873;PAX6:0.0794724883358;CUX2:0.0598520826802;TOPORS:0.0509308499611;ATF2:0.0473555813032;AR:0.0423647096552;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0269758647187;GTF2A1,2:0.0155926992631;JUN:0.00564047745364;SPIB:-0.0206468099186;NFATC1..3:-0.051161994854;RXR{A,B,G}:-0.0571021864762;RUNX1..3:-0.0696326175554;STAT2,4,6:-0.0883076380905;NANOG:-0.0946716458886;SPI1:-0.0960938935034;SOX17:-0.105586183568;ZIC1..3:-0.109346527935;EVI1:-0.111796649814;GFI1:-0.156683359212;FOX{I1,J2}:-0.16885572863;NFY{A,B,C}:-0.20882029946;TGIF1:-0.240776538781;AHR_ARNT_ARNT2:-0.262354229877;LEF1_TCF7_TCF7L1,2:-0.270019348716;BPTF:-0.272198958978;SOX{8,9,10}:-0.296991649267;RFX2..5_RFXANK_RFXAP:-0.304234751525;FOXP3:-0.309469304731;bHLH_family:-0.335011734545;E2F1..5:-0.337391170371;SREBF1,2:-0.338749407385;RFX1:-0.344974218086;ATF5_CREB3:-0.371186268044;ATF4:-0.372960617272;YY1:-0.381662942065;ELF1,2,4:-0.382774884312;NFKB1_REL_RELA:-0.396335831091;AIRE:-0.458514527943;PRRX1,2:-0.45980774765;ZNF143:-0.534668758672;NRF1:-0.591918455874;MEF2{A,B,C,D}:-0.609023908624;HSF1,2:-0.630200293974;PAX1,9:-0.671938913856;FOSL2:-0.759255702715;HLF:-0.798533963017;POU2F1..3:-0.839706917901;OCT4_SOX2{dimer}:-0.840693960056;FOXQ1:-0.858599578736;HES1:-0.886782028249;CREB1:-0.889391609954;RORA:-0.891242845725;TP53:-0.934830344234;HBP1_HMGB_SSRP1_UBTF:-0.959894195969;PAX2:-0.983048064307;TEF:-0.985994563543;CEBPA,B_DDIT3:-1.0778637538;NFE2:-1.08767655368;TFDP1:-1.09808031236;BACH2:-1.14089792319;HOX{A4,D4}:-1.14156131708;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16897794106;FOS_FOS{B,L1}_JUN{B,D}:-1.17325526196;PPARG:-1.19261567162;HOX{A5,B5}:-1.22013774549;NFE2L1:-1.24011485943;NFIL3:-1.31678848387;ELK1,4_GABP{A,B1}:-1.32226482221;CRX:-1.34776315094;PAX4:-1.36964833684;STAT5{A,B}:-1.39718483024;PAX8:-1.43603212971;NFE2L2:-1.48873002776;NFIX:-1.52565045225;MYB:-1.54349983394;HIF1A:-1.89027335561PRRX1,2:4.9037064643;NKX2-3_NKX2-5:4.43838095548;MZF1:4.28954645966;FOXM1:4.24071978795;POU5F1:3.95473056703;SOX2:3.88884783726;HOXA9_MEIS1:3.85950164057;AHR_ARNT_ARNT2:3.82731316301;MED-1{core}:3.7303480966;ZFP161:3.66990383987;OCT4_SOX2{dimer}:3.54947738736;POU1F1:3.49560539871;ZNF384:3.43221210809;BREu{core}:3.42532621511;CDC5L:3.31314660137;FOXP1:3.30681612121;POU6F1:3.24897680292;EGR1..3:3.22150104559;ADNP_IRX_SIX_ZHX:3.19727419294;FOXD3:3.19071741278;PRDM1:3.13386396055;POU3F1..4:3.12148814383;MTE{core}:2.99440746525;PATZ1:2.98077120896;ALX1:2.95398503291;CUX2:2.90300339603;T:2.83158074863;SOX17:2.82283900735;RREB1:2.81065440275;TFDP1:2.68545155459;HMGA1,2:2.663132212;RFX1:2.64899312275;IKZF2:2.64101289825;PAX4:2.62687653055;TFAP2B:2.61329583132;MYFfamily:2.58422379872;PITX1..3:2.57813872037;NKX6-1,2:2.52038823885;GTF2I:2.40278164382;NHLH1,2:2.37406134868;REST:2.34701514644;SOX{8,9,10}:2.30614391462;DBP:2.3040217492;ONECUT1,2:2.27968585997;ZIC1..3:2.2616408028;BPTF:2.21895389611;TOPORS:2.20659959273;PAX5:2.17462148226;GATA4:2.16844944743;LHX3,4:2.13234581822;ATF2:2.0880876215;TGIF1:2.084419156;LEF1_TCF7_TCF7L1,2:2.04678696389;MAZ:1.99112432101;TEF:1.9620402195;HOX{A4,D4}:1.92446629409;ZBTB6:1.9133380816;GFI1B:1.90292024455;SMAD1..7,9:1.85011013127;NRF1:1.83712272424;ARID5B:1.71523129996;KLF4:1.68936842127;SOX5:1.64305398988;EVI1:1.5988904248;HIC1:1.59547974476;RBPJ:1.51620166494;GFI1:1.46141986447;NANOG:1.4571487311;MTF1:1.3919715636;AIRE:1.36928597622;GCM1,2:1.34653517381;LMO2:1.3042821177;YY1:1.2680241486;ZBTB16:1.24053649148;ZNF143:1.18176181207;JUN:0.998988559522;EP300:0.965960067283;FOXL1:0.939049537658;TLX2:0.911274687499;PAX6:0.879105187521;GZF1:0.857621536189;STAT1,3:0.842708041987;NKX3-1:0.831882307701;CDX1,2,4:0.8004291958;RFX2..5_RFXANK_RFXAP:0.771624780399;PAX8:0.751941971994;PBX1:0.749565072082;ZNF423:0.729429114449;RORA:0.7251061959;PAX1,9:0.639128026188;FOXN1:0.618242733668;FOXA2:0.592860077554;UFEwm:0.581176475785;GTF2A1,2:0.504814541939;FOXQ1:0.474847399858;HBP1_HMGB_SSRP1_UBTF:0.460699627296;FOX{F1,F2,J1}:0.436629130647;CREB1:0.384171241828;NFY{A,B,C}:0.362842821784;SPZ1:0.356927593248;PAX3,7:0.338002796219;ATF5_CREB3:0.316743370904;MAFB:0.310165431833;CRX:0.303543323895;SP1:0.29715302688;HAND1,2:0.211772569355;HMX1:0.177636708057;MEF2{A,B,C,D}:0.167157145958;FOXP3:0.154985322103;XCPE1{core}:0.152515914698;POU2F1..3:0.141286151336;XBP1:0.0706030989462;MYOD1:0.0412534426271;GATA6:-0.00173396402615;NKX3-2:-0.0668375958263;MYBL2:-0.0987946483587;NR1H4:-0.104202951874;ELK1,4_GABP{A,B1}:-0.148067520023;ATF4:-0.157779103706;DMAP1_NCOR{1,2}_SMARC:-0.251481649487;ZEB1:-0.254419287074;ZNF238:-0.262199907142;NANOG{mouse}:-0.284755456104;E2F1..5:-0.299739530939;FOX{I1,J2}:-0.329395743963;NKX2-1,4:-0.417396050345;PDX1:-0.432830704822;FOX{D1,D2}:-0.433095531332;NFIL3:-0.45784817485;HOX{A5,B5}:-0.462004601622;EBF1:-0.47131109607;HNF1A:-0.481045211092;TLX1..3_NFIC{dimer}:-0.506765484269;MYB:-0.536225767133;VSX1,2:-0.568204205927;SPIB:-0.593705025178;STAT2,4,6:-0.594428849647;SNAI1..3:-0.600712578318;SREBF1,2:-0.616940118973;PAX2:-0.649829171453;TFAP2{A,C}:-0.720027006021;TAL1_TCF{3,4,12}:-0.728012465836;TEAD1:-0.741568498789;HNF4A_NR2F1,2:-0.767352000104;TFAP4:-0.78210937824;TBP:-0.792847898253;SPI1:-0.793084266928;NR3C1:-0.808201029299;ALX4:-0.832702011545;PPARG:-0.862521565197;bHLH_family:-0.892808526593;NFE2L2:-0.963273724278;HOX{A6,A7,B6,B7}:-0.979326186445;HIF1A:-0.981326770139;IRF7:-1.02207418963;NKX2-2,8:-1.05008289437;RUNX1..3:-1.05546714333;CEBPA,B_DDIT3:-1.07847521838;IRF1,2:-1.08084812896;NFATC1..3:-1.08971389735;NFKB1_REL_RELA:-1.09477866225;HSF1,2:-1.14053744595;AR:-1.15259691671;FOS_FOS{B,L1}_JUN{B,D}:-1.15327807561;FOSL2:-1.15641499403;GLI1..3:-1.16398165843;NR5A1,2:-1.164590776;ZNF148:-1.18152977235;NR6A1:-1.21249681161;ESRRA:-1.22261303012;NFE2:-1.26019746062;NFE2L1:-1.26197667366;FOXO1,3,4:-1.27242932119;ETS1,2:-1.27291559424;EN1,2:-1.29170748984;BACH2:-1.34300484946;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.35391330623;IKZF1:-1.3729456514;TP53:-1.44516870345;STAT5{A,B}:-1.48560263062;TFCP2:-1.53229957881;HES1:-1.56004187949;ESR1:-1.60834429583;ATF6:-1.66037090964;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.71016862372;TBX4,5:-1.74107797012;HLF:-1.78837050465;ELF1,2,4:-1.87658493375;NFIX:-1.92485593461;SRF:-1.93951669512;RXR{A,B,G}:-2.01671933671;RXRA_VDR{dimer}:-2.64846133851
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10063-101H9;search_select_hide=table117:FF:10063-101H9
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:temporal lobe, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11772,CNhs12996
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetemporal lobe
dev stage22 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA702181
catalog numberCat:RtHFN: Brain temporal lobe
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005719
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11772 CAGE DRX008737 DRR009609
CNhs12996 CAGE DRX008738 DRR009610
Accession ID Hg19

Library idBAMCTSS
CNhs11772 DRZ001034 DRZ002419
CNhs12996 DRZ001035 DRZ002420
Accession ID Hg38

Library idBAMCTSS
CNhs11772 DRZ012384 DRZ013769
CNhs12996 DRZ012385 DRZ013770
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.968
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0213
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.157
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.363
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.1
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.157
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.157
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.157
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.152
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.152
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.257
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain1.007
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0114
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.178
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.272
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.272
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-7.859471e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.272
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.558
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0961
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.904
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.902
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.363
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.157
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.363
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



No results for this sample



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11772

Jaspar motifP-value
MA0002.28.35727e-4
MA0003.10.174
MA0004.10.458
MA0006.10.263
MA0007.10.157
MA0009.10.105
MA0014.10.581
MA0017.10.00353
MA0018.20.142
MA0019.10.261
MA0024.10.19
MA0025.10.103
MA0027.10.383
MA0028.10.345
MA0029.10.153
MA0030.10.572
MA0031.10.0842
MA0035.20.0457
MA0038.10.15
MA0039.20.127
MA0040.10.615
MA0041.10.476
MA0042.10.614
MA0043.10.781
MA0046.10.0675
MA0047.20.00659
MA0048.10.638
MA0050.12.80604e-5
MA0051.10.00454
MA0052.10.342
MA0055.10.072
MA0057.10.298
MA0058.10.32
MA0059.10.196
MA0060.10.0813
MA0061.10.0153
MA0062.20.0421
MA0065.22.81935e-4
MA0066.10.0148
MA0067.10.877
MA0068.10.167
MA0069.10.338
MA0070.10.396
MA0071.10.0604
MA0072.10.292
MA0073.10.181
MA0074.10.14
MA0076.10.587
MA0077.10.144
MA0078.10.654
MA0079.20.951
MA0080.28.1854e-11
MA0081.10.0532
MA0083.10.00781
MA0084.10.978
MA0087.10.598
MA0088.10.155
MA0090.10.289
MA0091.10.388
MA0092.10.375
MA0093.10.457
MA0099.23.36291e-20
MA0100.10.955
MA0101.10.0058
MA0102.20.0238
MA0103.10.235
MA0104.20.708
MA0105.10.00846
MA0106.10.044
MA0107.10.00713
MA0108.20.574
MA0111.10.625
MA0112.21.77974e-4
MA0113.10.0369
MA0114.10.00528
MA0115.10.318
MA0116.10.0141
MA0117.10.817
MA0119.10.154
MA0122.10.2
MA0124.10.706
MA0125.10.312
MA0131.10.603
MA0135.10.812
MA0136.17.10682e-14
MA0137.20.179
MA0138.20.555
MA0139.10.229
MA0140.10.00253
MA0141.10.00464
MA0142.10.598
MA0143.10.485
MA0144.10.0912
MA0145.10.105
MA0146.10.0162
MA0147.10.605
MA0148.10.0445
MA0149.10.00999
MA0150.13.22729e-5
MA0152.10.366
MA0153.10.184
MA0154.10.0252
MA0155.10.532
MA0156.11.21398e-7
MA0157.10.0493
MA0159.10.00178
MA0160.10.00676
MA0162.10.204
MA0163.11.24466e-4
MA0164.10.881
MA0258.10.00616
MA0259.10.985


library id: CNhs12996This sample isn't target for the analysis



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11772

Novel motifP-value
10.0726
100.0945
1000.53
1010.819
1020.869
1030.0508
1040.105
1050.188
1060.0383
1070.129
1080.999
1094.6965e-4
110.025
1100.163
1110.318
1120.254
1130.283
1140.0553
1150.765
1160.403
1170.0261
1180.254
1190.267
120.563
1200.296
1210.324
1220.577
1230.0924
1240.347
1250.381
1260.0222
1270.216
1280.17
1290.403
130.0054
1300.0672
1310.644
1320.727
1330.356
1340.814
1350.719
1360.00994
1370.423
1380.676
1390.105
140.66
1400.73
1410.425
1420.842
1430.00585
1440.754
1450.305
1460.48
1470.956
1480.0435
1490.105
150.0668
1500.247
1510.437
1520.0454
1530.817
1540.466
1550.636
1560.527
1570.383
1580.816
1590.293
160.0367
1600.247
1610.15
1620.583
1630.393
1640.0925
1650.207
1660.995
1670.635
1680.0478
1690.0109
170.0817
180.216
190.131
20.567
200.538
210.202
220.0937
230.155
240.0309
250.387
260.0276
270.38
280.696
290.0544
30.0489
300.677
310.715
320.052
330.116
340.488
350.545
360.164
370.0149
380.267
390.26
40.988
400.0403
410.246
420.213
430.116
440.198
450.533
460.221
470.0701
480.0838
490.197
50.274
500.322
510.388
520.344
530.948
540.308
550.749
560.386
570.574
580.259
590.0359
60.973
600.0416
610.0463
620.157
630.145
640.44
650.217
660.289
670.548
680.164
690.447
70.0435
700.0233
710.0185
720.146
730.0151
740.901
750.0413
760.584
770.124
780.00884
790.293
80.105
800.139
810.668
820.348
830.00247
840.838
850.0824
860.216
878.98971e-4
880.704
890.182
90.246
900.505
910.853
920.266
930.514
940.142
950.00576
960.385
970.796
980.263
990.563


library id: CNhs12996

Novel motifP-value
10.25
100.181
1000.556
1010.769
1020.359
1030.7
1040.624
1050.119
1060.521
1070.0738
1080.333
1090.0774
110.576
1100.298
1110.43
1120.0648
1130.0118
1140.837
1150.111
1160.368
1170.00875
1180.668
1190.266
120.365
1200.64
1210.277
1220.173
1230.285
1240.476
1250.744
1260.628
1270.205
1280.136
1290.501
130.106
1300.162
1310.758
1320.0133
1330.49
1340.974
1350.0981
1360.499
1370.262
1380.853
1390.858
140.543
1400.921
1410.987
1420.727
1430.16
1440.773
1450.499
1460.647
1470.297
1480.0911
1490.153
150.191
1500.429
1510.489
1520.636
1530.847
1540.656
1550.539
1560.67
1570.574
1580.836
1590.126
160.791
1600.62
1610.688
1620.635
1630.388
1640.561
1650.517
1660.264
1670.579
1680.568
1690.801
170.957
180.0296
190.0251
20.00333
200.0105
210.469
220.716
230.197
240.539
250.592
260.726
270.087
280.573
290.0383
30.389
300.0791
310.489
323.21252e-6
330.362
340.535
350.999
360.0222
370.0818
380.715
390.689
40.477
400.0971
410.0118
420.259
430.914
440.313
450.684
460.902
470.563
480.633
490.615
50.736
500.982
510.644
520.235
530.854
540.762
550.822
560.784
570.234
580.85
590.158
60.872
600.384
610.246
620.909
630.711
640.915
650.654
660.00314
670.134
680.471
690.801
70.938
700.495
710.42
720.78
730.0187
740.21
750.0129
760.0166
770.252
780.582
790.166
80.862
800.284
810.501
820.501
830.979
840.742
850.109
860.177
870.00787
880.747
890.491
90.808
900.0592
910.0548
920.189
930.235
940.0266
950.00667
960.912
970.433
980.333
990.186



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11772
library id: CNhs12996


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002108 (small intestine)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002114 (duodenum)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010063 (human duodenum - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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