FF:10075-102A3: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	lung, right lower lobe, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11786
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	29 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A511335
catalog number	Cat:RtHAN: Lung
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004910

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11786		CAGE		DRX008680		DRR009552

Accession ID Hg19

Library id		BAM		CTSS
CNhs11786		DRZ000977		DRZ002362

Accession ID Hg38

Library id		BAM		CTSS
CNhs11786		DRZ012327		DRZ013712

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0303
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.151
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.326
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.542
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.151
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.151
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0.542
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.591
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.351
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.151
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0.151
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.19
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.151
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.882
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.151
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.151
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.565
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.075
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.364
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.105
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.151
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.428
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.608
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.659
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0753
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.262
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.151
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.151
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.151
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.151
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.424
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.635
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.183
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.151
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.351
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.232
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.262
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.262
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.351
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	1.255
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11786

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.442
MA0003.1	MA0003.1	0.157
MA0004.1	MA0004.1	0.0309
MA0006.1	MA0006.1	0.0997
MA0007.1	MA0007.1	0.581
MA0009.1	MA0009.1	0.0221
MA0014.1	MA0014.1	0.54
MA0017.1	MA0017.1	0.751
MA0018.2	MA0018.2	0.146
MA0019.1	MA0019.1	0.896
MA0024.1	MA0024.1	0.00181
MA0025.1	MA0025.1	0.973
MA0027.1	MA0027.1	0.78
MA0028.1	MA0028.1	2.35599e-7
MA0029.1	MA0029.1	0.362
MA0030.1	MA0030.1	0.0301
MA0031.1	MA0031.1	0.0547
MA0035.2	MA0035.2	0.153
MA0038.1	MA0038.1	0.0039
MA0039.2	MA0039.2	0.68
MA0040.1	MA0040.1	0.683
MA0041.1	MA0041.1	0.502
MA0042.1	MA0042.1	0.763
MA0043.1	MA0043.1	0.182
MA0046.1	MA0046.1	0.643
MA0047.2	MA0047.2	4.12116e-4
MA0048.1	MA0048.1	0.163
MA0050.1	MA0050.1	2.48694e-4
MA0051.1	MA0051.1	0.0865
MA0052.1	MA0052.1	0.24
MA0055.1	MA0055.1	0.00313
MA0057.1	MA0057.1	0.617
MA0058.1	MA0058.1	0.0113
MA0059.1	MA0059.1	0.00783
MA0060.1	MA0060.1	3.04975e-9
MA0061.1	MA0061.1	0.00308
MA0062.2	MA0062.2	1.08027e-6
MA0065.2	MA0065.2	0.197
MA0066.1	MA0066.1	0.108
MA0067.1	MA0067.1	0.407
MA0068.1	MA0068.1	0.128
MA0069.1	MA0069.1	0.929
MA0070.1	MA0070.1	0.241
MA0071.1	MA0071.1	0.0564
MA0072.1	MA0072.1	0.0233
MA0073.1	MA0073.1	0.723
MA0074.1	MA0074.1	0.67
MA0076.1	MA0076.1	8.27028e-9
MA0077.1	MA0077.1	0.542
MA0078.1	MA0078.1	0.217
MA0079.2	MA0079.2	0.145
MA0080.2	MA0080.2	6.80449e-5
MA0081.1	MA0081.1	0.479
MA0083.1	MA0083.1	0.526
MA0084.1	MA0084.1	0.326
MA0087.1	MA0087.1	0.543
MA0088.1	MA0088.1	0.00359
MA0090.1	MA0090.1	0.469
MA0091.1	MA0091.1	0.529
MA0092.1	MA0092.1	0.973
MA0093.1	MA0093.1	0.0212
MA0099.2	MA0099.2	5.13609e-25
MA0100.1	MA0100.1	0.198
MA0101.1	MA0101.1	7.23512e-4
MA0102.2	MA0102.2	0.0493
MA0103.1	MA0103.1	0.0122
MA0104.2	MA0104.2	4.99195e-5
MA0105.1	MA0105.1	2.17698e-4
MA0106.1	MA0106.1	0.0451
MA0107.1	MA0107.1	7.70634e-4
MA0108.2	MA0108.2	0.0165
MA0111.1	MA0111.1	0.99
MA0112.2	MA0112.2	0.772
MA0113.1	MA0113.1	0.563
MA0114.1	MA0114.1	0.198
MA0115.1	MA0115.1	0.912
MA0116.1	MA0116.1	0.284
MA0117.1	MA0117.1	0.0376
MA0119.1	MA0119.1	0.837
MA0122.1	MA0122.1	0.421
MA0124.1	MA0124.1	0.527
MA0125.1	MA0125.1	0.69
MA0131.1	MA0131.1	0.467
MA0135.1	MA0135.1	0.254
MA0136.1	MA0136.1	0.26
MA0137.2	MA0137.2	0.234
MA0138.2	MA0138.2	0.567
MA0139.1	MA0139.1	0.461
MA0140.1	MA0140.1	0.0112
MA0141.1	MA0141.1	0.102
MA0142.1	MA0142.1	0.0588
MA0143.1	MA0143.1	0.366
MA0144.1	MA0144.1	0.186
MA0145.1	MA0145.1	0.196
MA0146.1	MA0146.1	0.678
MA0147.1	MA0147.1	7.44523e-6
MA0148.1	MA0148.1	0.0175
MA0149.1	MA0149.1	0.285
MA0150.1	MA0150.1	3.43554e-6
MA0152.1	MA0152.1	0.59
MA0153.1	MA0153.1	0.00546
MA0154.1	MA0154.1	0.498
MA0155.1	MA0155.1	0.723
MA0156.1	MA0156.1	0.731
MA0157.1	MA0157.1	0.493
MA0159.1	MA0159.1	0.754
MA0160.1	MA0160.1	0.108
MA0162.1	MA0162.1	0.624
MA0163.1	MA0163.1	2.74875e-4
MA0164.1	MA0164.1	0.288
MA0258.1	MA0258.1	0.733
MA0259.1	MA0259.1	0.00172

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11786

Novel motif	Logo	P-value
1	1	0.235
10	10	0.109
100	100	0.317
101	101	0.379
102	102	0.879
103	103	0.198
104	104	0.433
105	105	0.617
106	106	0.121
107	107	0.0131
108	108	0.618
109	109	0.132
11	11	0.398
110	110	0.699
111	111	0.767
112	112	0.289
113	113	0.104
114	114	0.681
115	115	0.0796
116	116	0.782
117	117	0.0296
118	118	0.13
119	119	0.746
12	12	0.325
120	120	0.111
121	121	0.75
122	122	0.448
123	123	0.17
124	124	0.642
125	125	0.531
126	126	0.553
127	127	0.448
128	128	0.149
129	129	0.0409
13	13	0.232
130	130	0.315
131	131	0.452
132	132	0.039
133	133	0.147
134	134	0.786
135	135	0.415
136	136	0.215
137	137	0.476
138	138	0.505
139	139	0.587
14	14	0.242
140	140	0.704
141	141	0.206
142	142	0.175
143	143	0.258
144	144	0.818
145	145	0.365
146	146	0.882
147	147	0.715
148	148	0.983
149	149	0.239
15	15	0.287
150	150	0.982
151	151	0.692
152	152	0.0364
153	153	0.276
154	154	0.608
155	155	0.914
156	156	0.189
157	157	0.563
158	158	0.916
159	159	0.394
16	16	0.752
160	160	0.894
161	161	0.136
162	162	0.241
163	163	0.0972
164	164	0.316
165	165	0.0233
166	166	0.806
167	167	0.036
168	168	0.58
169	169	0.248
17	17	0.861
18	18	0.0144
19	19	0.299
2	2	0.028
20	20	0.156
21	21	0.702
22	22	0.824
23	23	0.204
24	24	0.868
25	25	0.323
26	26	0.717
27	27	0.611
28	28	0.968
29	29	0.0479
3	3	0.855
30	30	0.11
31	31	0.846
32	32	0.953
33	33	0.227
34	34	0.107
35	35	0.415
36	36	0.119
37	37	0.468
38	38	0.646
39	39	0.076
4	4	0.0439
40	40	0.205
41	41	0.166
42	42	0.414
43	43	0.736
44	44	0.423
45	45	0.177
46	46	0.538
47	47	0.249
48	48	0.265
49	49	0.348
5	5	0.377
50	50	0.486
51	51	0.711
52	52	0.094
53	53	0.457
54	54	0.818
55	55	0.525
56	56	0.82
57	57	0.381
58	58	0.988
59	59	0.698
6	6	0.514
60	60	0.271
61	61	0.911
62	62	0.542
63	63	0.61
64	64	0.367
65	65	0.389
66	66	1.53588e-4
67	67	0.877
68	68	0.474
69	69	0.691
7	7	0.508
70	70	0.846
71	71	0.324
72	72	0.965
73	73	0.626
74	74	0.322
75	75	0.0104
76	76	0.204
77	77	0.0736
78	78	0.451
79	79	0.531
8	8	0.894
80	80	0.776
81	81	0.728
82	82	0.39
83	83	0.91
84	84	0.869
85	85	0.226
86	86	0.548
87	87	0.0296
88	88	0.519
89	89	0.842
9	9	0.384
90	90	0.0241
91	91	0.659
92	92	0.619
93	93	0.031
94	94	0.552
95	95	0.191
96	96	0.504
97	97	0.952
98	98	0.217
99	99	0.425

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11786

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010019 human lung - adult sample
UBERON:0002171 lower lobe of right lung

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0002171 (lower lobe of right lung)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0006518 (right lung lobe)
0008949 (lower lobe of lung)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000101 (lobe of lung)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0002167 (right lung)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010019 (human lung - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004910
-|accession_numbers=CAGE;DRX008680;DRR009552;DRZ000977;DRZ002362
+|accession_numbers=CAGE;DRX008680;DRR009552;DRZ000977;DRZ002362;DRZ012327;DRZ013712
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0002171,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0006518,UBERON:0008949,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000101,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0002167
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.59!389.80!HOPX;;chr6:134210243..134210257,+!p1@TCF21!2.24!172.32!TCF21;;chr20:62680984..62680999,-!p1@SOX18!2.08!156.17!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.97!92.79!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.94!85.33!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!1.92!100.66!FOXF1;;chr3:128212033..128212051,-!p1@GATA2!1.81!63.38!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.85!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.68!53.44!PPARG;;chr5:2751762..2751784,-!p1@IRX2!1.68!46.39!IRX2;;chr3:169381420..169381535,-!p1@MECOM!1.67!53.44!MECOM;;chr11:34642612..34642646,+!p1@EHF!1.66!45.15!EHF;;chr2:46524537..46524553,+!p1@EPAS1!1.63!3832.54!EPAS1;;chr16:54320617..54320643,-!p3@IRX3!1.63!53.44!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.01!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.34!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!1.61!39.77!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.61!39.35!TFCP2L1;;chr21:39870339..39870443,-!p1@ERG!1.55!34.80!ERG;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.38!ELF3;;chr16:54320646..54320672,-!p2@IRX3!1.51!47.22!IRX3;;chr16:85932760..85932775,+!p1@IRF8!1.49!30.24!IRF8;;chr2:68592406..68592424,+!p1@PLEK!1.48!29.00!PLEK;;chr17:74137321..74137337,-!p1@FOXJ1!1.47!28.58!FOXJ1;;chr5:2751785..2751808,-!p2@IRX2!1.44!26.51!IRX2;;chr11:47400062..47400077,-!p2@SPI1!1.43!26.10!SPI1;;chr17:53342311..53342400,+!p1@HLF!1.41!28.17!HLF;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.85!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.39!42.25!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.38!22.78!TFEC;;chr1:151804244..151804310,-!p1@RORC!1.38!22.78!RORC;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.50!DACH1;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.95!FOXA1;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.54!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.87!NR4A3;;chr2:46524865..46524870,+!p9@EPAS1!1.34!24.44!EPAS1;;chr8:55370487..55370503,+!p1@SOX17!1.34!20.71!SOX17;;chr17:59529743..59529798,+!p1@TBX4!1.33!20.30!TBX4;;chr1:201979703..201979721,+!p2@ELF3!1.33!20.30!ELF3;;chr12:52445218..52445237,+!p1@NR4A1!1.31!239.02!NR4A1;;chr22:41763452..41763466,+!p2@TEF!1.31!19.47!TEF;;chr2:180610565..180610578,-!p9@ZNF385B!1.31!19.47!ZNF385B;;chr8:102504651..102504683,+!p1@GRHL2!1.30!19.05!GRHL2;;chr15:66994523..66994541,+!p5@SMAD6!1.29!18.64!SMAD6;;chr16:79634624..79634642,-!p1@MAF!1.28!70.42!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.23!DACH1;;chrX:106960285..106960299,-!p1@TSC22D3!1.26!447.38!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.40!KDM5D;;chr14:74256787..74256858,-!p6@C14orf43!1.26!17.40!C14orf43;;chr17:59477233..59477263,+!p1@TBX2!1.23!49.29!TBX2;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.74!SPDEF;;chr2:85981107..85981120,+!p3@ATOH8!1.22!15.74!ATOH8;;chr14:36988564..36988601,-!p7@NKX2-1!1.22!15.74!NKX2-1;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.34!ZFP106;;chr19:16435625..16435682,+!p1@KLF2!1.20!466.43!KLF2;;chr11:61520075..61520136,+!p1@C11orf9!1.20!31.48!C11orf9;;chr17:59477197..59477212,+!p2@TBX2!1.20!25.68!TBX2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.30!FOXF2;;chr2:145277882..145277967,-!p3@ZEB2!1.19!24.85!ZEB2;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.50!ZNF366;;chr16:54320675..54320715,-!p1@IRX3!1.17!29.41!IRX3;;chr11:125034640..125034655,+!p1@PKNOX2!1.17!13.67!PKNOX2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.47!NFATC2;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.54!FOXQ1;;chr19:16435705..16435726,+!p3@KLF2!1.15!13.26!KLF2;;chr15:66994561..66994597,+!p2@SMAD6!1.14!30.65!SMAD6;;chr17:6926362..6926377,+!p1@BCL6B!1.14!12.84!BCL6B;;chr11:113930401..113930422,+!p3@ZBTB16!1.14!12.84!ZBTB16;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.84!SPI1;;chr15:96873984..96873999,+!p3@NR2F2!1.13!92.38!NR2F2;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.31!OSR1;;chr7:128577972..128578047,+!p1@IRF5!1.11!18.64!IRF5;;chr7:50344289..50344323,+!p1@IKZF1!1.11!12.01!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.10!11.60!IKZF1;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.61!EGR2;;chr3:71355163..71355209,-!p5@FOXP1!1.09!15.74!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.09!11.18!NR3C2;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.18!SPI1;;chr6:391743..391759,+!p1@IRF4!1.09!11.18!IRF4;;chr2:46612334..46612349,+!p6@EPAS1!1.08!14.50!EPAS1;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.05!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.65!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!1.07!10.77!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!1.07!10.77!MEOX2;;chr14:36989427..36989442,-!p1@NKX2-1!1.07!10.77!NKX2-1;;chrX:131623044..131623089,-!p1@MBNL3!1.06!43.50!MBNL3;;chr7:14028488..14028516,-!p2@ETV1!1.06!11.60!ETV1;;chr7:27170359..27170381,-!p1@HOXA4!1.06!10.36!HOXA4;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.36!SPIB;;chr17:36105042..36105060,-!p1@HNF1B!1.06!10.36!HNF1B;;chr2:157189180..157189290,-!p1@NR4A2!1.05!53.44!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!1.05!39.77!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.98!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.50!KLF15;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.48!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.51!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.40!FOXP2;;chr16:79634464..79634493,-!p5@MAF!1.04!9.94!MAF;;chr11:111249993..111250006,-!p1@POU2AF1!1.04!9.94!POU2AF1;;chr12:52448420..52448460,+!p5@NR4A1!1.04!9.94!NR4A1;;chr1:47697539..47697573,-!p3@TAL1!1.04!9.94!TAL1;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.60!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!1.01!1190.94!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.60!KLF15;;chr2:145277640..145277771,-!p1@ZEB2!1.00!124.27!ZEB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.00!33.14!BHLHE41;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!29.83!ZMAT1;;chr1:10754477..10754517,-!p1@CASZ1!1.00!15.33!CASZ1;;chr7:149470540..149470596,-!p2@ZNF467!1.00!12.01!ZNF467;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.11!ZFY;;chr14:36990061..36990072,-!p11@NKX2-1!1.00!9.11!NKX2-1;;chr9:110252035..110252057,-!p1@KLF4!0.99!142.08!KLF4;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!56.34!CSRNP1;;chr15:66994663..66994680,+!p1@SMAD6!0.99!21.13!SMAD6;;chr12:52448338..52448401,+!p7@NR4A1!0.99!8.70!NR4A1;;chr18:77155922..77155939,+!p1@NFATC1!0.97!23.20!NFATC1;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.28!FOXA2;;chr2:180427261..180427297,-!p6@ZNF385B!0.97!8.28!ZNF385B;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.28!ZNF727;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.74!RUNX3;;chr2:46524878..46524891,+!p3@EPAS1!0.95!14.08!EPAS1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.84!MEF2C;;chr2:231090433..231090469,+!p1@SP140!0.95!7.87!SP140;;chr3:169381183..169381205,-!p4@MECOM!0.95!7.87!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.87!SPI1;;chr16:54964740..54964789,+!p1@IRX5!0.94!11.18!IRX5;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.84!CEBPB;;chr2:46602879..46602899,+!p8@EPAS1!0.93!9.11!EPAS1;;chr3:114343039..114343085,-!p8@ZBTB20!0.93!7.46!ZBTB20;;chr20:48808064..48808086,+!p15@CEBPB!0.93!7.46!CEBPB;;chr12:52437488..52437507,+!p2@NR4A1!0.93!7.46!NR4A1;;chr16:54320322..54320343,-!p7@IRX3!0.93!7.46!IRX3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.46!ZBTB7C;;chr19:16435735..16435773,+!p4@KLF2!0.93!7.46!KLF2;;chr20:39317868..39317884,-!p1@MAFB!0.92!91.13!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.92!21.13!TSC22D3;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.30!ELK3;;chr16:54320158..54320200,-!p5@IRX3!0.92!10.77!IRX3;;chr17:59477275..59477286,+!p3@TBX2!0.92!9.94!TBX2;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.28!TCF4;;chr18:53254566..53254567,-!p8@TCF4!0.91!12.01!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!0.91!7.04!ZNF750;;chr12:52448515..52448538,+!p9@NR4A1!0.91!7.04!NR4A1;;chr5:122424918..122424944,+!p1@PRDM6!0.91!7.04!PRDM6;;chr5:122424955..122424988,+!p2@PRDM6!0.91!7.04!PRDM6;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.91!7.04!HOXA5;;chr3:12392932..12392962,+!p8@PPARG!0.91!7.04!PPARG;;chr20:30433396..30433414,-!p1@FOXS1!0.91!7.04!FOXS1;;chr3:69788576..69788648,+!p1@MITF!0.90!38.52!MITF;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.94!PROX1;;chr2:46602901..46602926,+!p7@EPAS1!0.90!9.53!EPAS1;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.70!SATB1;;chr1:61548225..61548299,+!p1@NFIA!0.89!91.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.17!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.89!27.34!HHEX;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.44!MEIS1;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.94!HEY1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.88!741.90!ZFP36L2;;chr3:71179699..71179744,-!p2@FOXP1!0.88!51.78!FOXP1;;chrX:106960249..106960260,-!p5@TSC22D3!0.88!10.77!TSC22D3;;chr9:124991204..124991246,-!p1@LHX6!0.88!6.63!LHX6;;chr6:152011654..152011682,+!p1@ESR1!0.88!6.63!ESR1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.63!HES2;;chr3:168865250..168865272,-!p5@MECOM!0.88!6.63!MECOM;;chr11:34535297..34535317,-!p1@ELF5!0.88!6.63!ELF5;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.28!NCOR2;;chr12:24715376..24715432,-!p1@SOX5!0.87!8.28!SOX5;;chr6:106546808..106546833,+!p3@PRDM1!0.87!8.28!PRDM1;;chr8:106330696..106330719,+!p2@ZFPM2!0.87!8.28!ZFPM2;;chr12:54694758..54694805,-!p1@NFE2!0.87!7.87!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.86!792.44!FOS;;chr3:71630980..71631110,-!p3@FOXP1!0.86!22.78!FOXP1;;chr5:139494712..139494759,+!p5@PURA!0.86!10.77!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.86!6.21!IRX1;;chr2:85981073..85981091,+!p5@ATOH8!0.86!6.21!ATOH8;;chr14:36989940..36989957,-!p2@NKX2-1!0.86!6.21!NKX2-1;;chr19:54058073..54058088,+!p1@ZNF331!0.86!6.21!ZNF331;;chr5:88178983..88179012,-!p1@MEF2C!0.85!50.54!MEF2C;;chr13:41240717..41240735,-!p2@FOXO1!0.85!43.91!FOXO1;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.60!GATA2;;chr10:94449675..94449694,+!p2@HHEX!0.85!16.98!HHEX;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.18!GATA6;;chr2:85980951..85981004,+!p1@ATOH8!0.85!10.36!ATOH8;;chr14:75746722..75746777,+!p2@FOS!0.85!7.87!FOS;;chr3:24536253..24536328,-!p1@THRB!0.84!11.60!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.84!8.2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RG;;chr1:209979449..209979460,-!p3@IRF6!0.42!1.66!IRF6;;chr1:25256439..25256476,-!p3@RUNX3!0.42!1.66!RUNX3;;chr1:3607307..3607317,+!p15@TP73!0.42!1.66!TP73;;chr1:42384343..42384380,-!p4@HIVEP3!0.42!1.66!HIVEP3;;chr1:44513995..44514031,+!p1@KLF17!0.42!1.66!KLF17;;chr1:61548333..61548342,+!p15@NFIA!0.42!1.66!NFIA;;chr20:49547417..49547424,-!p8@ADNP!0.42!1.66!ADNP;;chrX:118740008..118740045,-!p3@NKRF!0.42!1.66!NKRF;;chr9:14314946..14314983,-!p8@NFIB!0.42!1.66!NFIB;;chr9:3525848..3525863,-!p6@RFX3!0.42!1.66!RFX3;;chr10:31607811..31607837,+!p6@ZEB1!0.42!1.66!ZEB1;;chr10:35484090..35484104,+!p6@CREM!0.42!1.66!CREM;;chr11:120110863..120110908,+!p2@POU2F3!0.42!1.66!POU2F3;;chr11:125034586..125034604,+!p3@PKNOX2!0.42!1.66!PKNOX2;;chr11:128331703..128331717,-!p8@ETS1!0.42!1.66!ETS1;;chr11:128392258..128392264,-!p7@ETS1!0.42!1.66!ETS1;;chr11:128457446..128457461,-!p4@ETS1!0.42!1.66!ETS1;;chr11:34535332..34535347,-!p2@ELF5!0.42!1.66!ELF5;;chr11:34642656..34642667,+!p2@EHF!0.42!1.66!EHF;;chr12:3068634..3068656,+!p5@TEAD4!0.42!1.66!TEAD4;;chr12:52451146..52451163,+!p12@NR4A1!0.42!1.66!NR4A1;;chr12:54694653..54694672,-!p2@NFE2!0.42!1.66!NFE2;;chr13:72441047..72441060,-!p11@DACH1!0.42!1.66!DACH1;;chr13:72441259..72441268,-!p8@DACH1!0.42!1.66!DACH1;;chr14:36989358..36989378,-!p3@NKX2-1!0.42!1.66!NKX2-1;;chr14:36989573..36989577,-!p18@NKX2-1!0.42!1.66!NKX2-1;;chr14:37051768..37051779,-!p4@NKX2-8!0.42!1.66!NKX2-8;;chr22:19748231..19748317,+!p1@TBX1!0.42!1.66!TBX1;;chr22:38609570..38609585,+!p6@MAFF!0.42!1.66!MAFF;;chr2:100759010..100759035,-!p1@AFF3!0.42!1.66!AFF3;;chr2:145277833..145277845,-!p16@ZEB2!0.42!1.66!ZEB2;;chr2:180427235..180427244,-!p10@ZNF385B!0.42!1.66!ZNF385B;;chr2:180726040..180726052,-!p2@ZNF385B!0.42!1.66!ZNF385B;;chr2:28635317..28635334,+!p10@FOSL2!0.42!1.66!FOSL2;;chr2:66662510..66662521,+!p6@MEIS1!0.42!1.66!MEIS1;;chr2:66666233..66666240,+!p9@MEIS1!0.42!1.66!MEIS1;;chr2:66666432..66666462,+!p7@MEIS1!0.42!1.66!MEIS1;;chr2:70166258..70166288,+!p5@MXD1!0.42!1.66!MXD1;;chr2:85981969..85982019,+!p6@ATOH8!0.42!1.66!ATOH8;;chr3:114477881..114477914,-!p17@ZBTB20!0.42!1.66!ZBTB20;;chr3:14989186..14989193,+!p10@NR2C2!0.42!1.66!NR2C2;;chr3:169381545..169381557,-!p10@MECOM!0.42!1.66!MECOM;;chr3:193854202..193854232,+!p2@HES1!0.42!1.66!HES1;;chr3:24536332..24536358,-!p2@THRB!0.42!1.66!THRB;;chr3:33431150..33431185,-!p9@UBP1!0.42!1.66!UBP1;;chr3:5022272..5022321,+!p7@BHLHE40!0.42!1.66!BHLHE40;;chr4:57522513..57522548,-!p4@HOPX!0.42!1.66!HOPX;;chr21:36260980..36261011,-!p1@RUNX1!0.41!66.69!RUNX1;;chr19:52598958..52599026,-!p1@ZNF841!0.41!21.95!ZNF841;;chr15:85291544..85291598,+!p2@ZNF592!0.41!13.67!ZNF592;;chr19:21688387..21688432,+!p1@ZNF429!0.41!13.67!ZNF429;;chr16:29816957..29817031,+!p7@MAZ!0.41!9.94!MAZ;;chr19:56135928..56135936,-!p1@ZNF784!0.41!8.28!ZNF784;;chr19:45252008..45252024,+!p2@BCL3!0.41!7.04!BCL3;;chr19:52674696..52674758,-!p1@ZNF836!0.41!6.21!ZNF836;;chr5:178487354..178487408,+!p1@ZNF354C!0.41!6.21!ZNF354C;;chr12:52430894..52430952,+!p3@NR4A1!0.41!3.73!NR4A1;;chr6:157099159..157099185,+!p6@ARID1B!0.41!3.31!ARID1B;;chr1:8483723..8483752,-!p12@RERE!0.41!2.90!RERE;;chr9:32550965..32551031,-!p4@TOPORS!0.41!2.90!TOPORS;;chr14:89878529..89878559,-!p5@FOXN3!0.41!2.49!FOXN3;;chr17:65821795..65821826,+!p3@BPTF!0.41!2.49!BPTF;;chr19:16435523..16435619,+!p2@KLF2!0.41!2.49!KLF2;;chr1:158979680..158979683,+!p9@IFI16!0.41!2.49!IFI16;;chr19:58341656..58341694,+!p5@ZNF587!0.41!2.07!ZNF587;;chr1:67395833..67395851,+!p8@MIER1!0.41!2.07!MIER1;;chr6:135502501..135502546,+!p1@MYB!0.41!2.07!MYB;;chr7:17369649..17369664,+!p4@AHR!0.41!2.07!AHR;;chr8:71316403..71316427,-!p6@NCOA2!0.41!2.07!NCOA2;;chr19:13106214..13106382,+!p1@NFIX!0.40!52.61!NFIX;;chr12:19592602..19592648,+!p1@AEBP2!0.40!25.68!AEBP2;;chr22:31742303..31742350,-!p1@PATZ1!0.40!24.44!PATZ1;;chr19:11998584..11998649,+!p1@ZNF69!0.40!9.53!ZNF69;;chr6:35310363..35310382,+!p3@PPARD!0.40!7.87!PPARD;;chr21:36421535..36421610,-!p2@RUNX1!0.40!7.46!RUNX1;;chr19:2819854..2819891,+!p1@ZNF554!0.40!7.46!ZNF554;;chr3:71179746..71179783,-!p7@FOXP1!0.40!7.04!FOXP1;;chr4:83821835..83821896,+!p1@THAP9!0.40!6.63!THAP9;;chr14:65569101..65569119,-!p3@MAX!0.40!6.63!MAX;;chr8:71315615..71315638,-!p3@NCOA2!0.40!5.39!NCOA2;;chr15:74833584..74833626,+!p1@ARID3B!0.40!4.56!ARID3B;;chr16:8962544..8962584,-!p2@CARHSP1!0.40!4.56!CARHSP1;;chr11:7041554..7041602,-!p1@ZNF214!0.40!3.73!ZNF214;;chr8:116681150..116681164,-!p5@TRPS1!0.40!3.73!TRPS1;;chr19:20150029..20150078,-!p3@ZNF682!0.40!3.31!ZNF682;;chr10:21823218..21823240,+!p3@MLLT10!0.40!3.31!MLLT10;;chr8:71316222..71316259,-!p5@NCOA2!0.40!2.90!NCOA2;;chr17:38465413..38465438,+!p5@RARA!0.40!2.90!RARA;;chr7:104752306..104752335,+!p4@MLL5!0.40!2.49!MLL5;;chr6:108882076..108882087,+!p6@FOXO3!0.40!2.07!FOXO3;;chr8:116681275..116681290,-!p11@TRPS1!0.40!2.07!TRPS1;;chr9:2016758..2016782,+!p11@SMARCA2!0.40!2.07!SMARCA2;;chr4:185395590..185395627,-!p3@IRF2!0.40!2.07!IRF2;;chr17:38465441..38465481,+!p6@RARA!0.40!2.07!RARA;;chr20:48807548..48807572,+!p14@C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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10075-102A3
 |is_a=EFO:0002091;;FF:0010019;;UBERON:0002171
@@ Line 46: / Line 52: @@
 |library_id=CNhs11786
 |library_id_phase_based=2:CNhs11786
-|name="lung, right lower lobe, adult, donor1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10075
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10075
+|name=lung, right lower lobe, adult, donor1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs11786,LSID820,release009,COMPLETED"
+|profile_hcage=CNhs11786,LSID820,release009,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10075-102A3;search_select_hide=table117:FF:10075-102A3
 }}

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FF:10075-102A3: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0