FF:10075-102A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004910 | ||
|accession_numbers=CAGE;DRX008680;DRR009552;DRZ000977;DRZ002362;DRZ012327;DRZ013712 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0002171,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0006518,UBERON:0008949,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000101,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0002167 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010019 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10075-102A3 | |id=FF:10075-102A3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010019;;UBERON:0002171 | ||
|is_obsolete= | |||
|library_id=CNhs11786 | |||
|library_id_phase_based=2:CNhs11786 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10075 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10075 | |||
|name=lung, right lower lobe, adult, donor1 | |name=lung, right lower lobe, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11786,LSID820,release009,COMPLETED | |profile_hcage=CNhs11786,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat:RtHAN: Lung | |rna_catalog_number=Cat:RtHAN: Lung | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.58262477156385e-283!GO:0005737;cytoplasm;5.04082276950778e-155!GO:0044444;cytoplasmic part;3.29362416190282e-98!GO:0043226;organelle;1.13640858125451e-95!GO:0043229;intracellular organelle;2.25345403237813e-95!GO:0043227;membrane-bound organelle;4.39749342721154e-93!GO:0043231;intracellular membrane-bound organelle;5.07557033243098e-93!GO:0005515;protein binding;2.53880636131999e-92!GO:0044422;organelle part;2.86283700532016e-64!GO:0044446;intracellular organelle part;5.72984749497374e-63!GO:0032991;macromolecular complex;2.89366965467455e-50!GO:0019538;protein metabolic process;2.8309792287169e-42!GO:0030529;ribonucleoprotein complex;5.51593529364937e-40!GO:0016043;cellular component organization and biogenesis;1.70119392816198e-39!GO:0044237;cellular metabolic process;9.8790193210615e-39!GO:0044238;primary metabolic process;1.26884591648522e-38!GO:0031090;organelle membrane;4.24298216496884e-37!GO:0003723;RNA binding;1.64243418637656e-36!GO:0044260;cellular macromolecule metabolic process;4.06849168830251e-36!GO:0043170;macromolecule metabolic process;4.24163967684841e-36!GO:0044267;cellular protein metabolic process;9.84446086629167e-36!GO:0033036;macromolecule localization;2.70864815194287e-35!GO:0015031;protein transport;2.32541563686391e-34!GO:0008104;protein localization;1.9364535522014e-33!GO:0045184;establishment of protein localization;1.9364535522014e-33!GO:0043233;organelle lumen;2.43687784833192e-31!GO:0031974;membrane-enclosed lumen;2.43687784833192e-31!GO:0044428;nuclear part;2.22050884885631e-30!GO:0005739;mitochondrion;4.52089488339274e-30!GO:0005829;cytosol;1.92841844538054e-28!GO:0006412;translation;2.16750853109371e-27!GO:0043234;protein complex;7.38325396435522e-27!GO:0005840;ribosome;7.00789482498691e-25!GO:0046907;intracellular transport;8.61360866714826e-25!GO:0006886;intracellular protein transport;5.24115971969963e-24!GO:0031967;organelle envelope;1.12402729320382e-22!GO:0031975;envelope;1.88015304904499e-22!GO:0005634;nucleus;2.3771874922857e-22!GO:0009059;macromolecule biosynthetic process;3.17420686908433e-22!GO:0003735;structural constituent of ribosome;3.67718208554813e-22!GO:0065003;macromolecular complex assembly;7.28926289879752e-22!GO:0044429;mitochondrial part;2.18753596768552e-21!GO:0016071;mRNA metabolic process;3.71609666280472e-21!GO:0009058;biosynthetic process;3.96712740583692e-21!GO:0033279;ribosomal subunit;3.97697523283028e-20!GO:0022607;cellular component assembly;2.25379204441537e-19!GO:0016192;vesicle-mediated transport;2.35952767223588e-19!GO:0008380;RNA splicing;6.26266693247876e-19!GO:0044249;cellular biosynthetic process;7.01628022874055e-19!GO:0005794;Golgi apparatus;1.85837924847008e-18!GO:0031981;nuclear lumen;3.45187037276651e-18!GO:0048770;pigment granule;4.73688984555915e-18!GO:0042470;melanosome;4.73688984555915e-18!GO:0006396;RNA processing;5.82668379659836e-18!GO:0051641;cellular localization;1.19145565279623e-17!GO:0051649;establishment of cellular localization;1.37043140309e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.8677506065661e-17!GO:0012505;endomembrane system;1.86776277549912e-17!GO:0006119;oxidative phosphorylation;2.03154782970756e-17!GO:0008134;transcription factor binding;5.44308252856578e-17!GO:0006397;mRNA processing;9.33911004106172e-17!GO:0005783;endoplasmic reticulum;7.58329398199778e-16!GO:0048523;negative regulation of cellular process;9.71875159712215e-16!GO:0043283;biopolymer metabolic process;5.66225064561145e-15!GO:0012501;programmed cell death;7.85290916518752e-15!GO:0005773;vacuole;8.08558162137698e-15!GO:0006915;apoptosis;1.33757124474736e-14!GO:0005740;mitochondrial envelope;1.6016166303351e-14!GO:0031966;mitochondrial membrane;3.20782265081043e-14!GO:0008219;cell death;4.02609257667259e-14!GO:0016265;death;4.02609257667259e-14!GO:0048519;negative regulation of biological process;6.12482769719614e-14!GO:0000323;lytic vacuole;7.80516560205979e-14!GO:0005764;lysosome;7.80516560205979e-14!GO:0005681;spliceosome;8.29004730770073e-14!GO:0019866;organelle inner membrane;1.184230459124e-13!GO:0044445;cytosolic part;2.45570710454228e-13!GO:0043412;biopolymer modification;2.45656238420008e-13!GO:0006793;phosphorus metabolic process;3.40724221254223e-13!GO:0006796;phosphate metabolic process;3.40724221254223e-13!GO:0006464;protein modification process;3.84227775770108e-13!GO:0005654;nucleoplasm;5.91430025631757e-13!GO:0000166;nucleotide binding;9.53342430251608e-13!GO:0006996;organelle organization and biogenesis;1.45403703376118e-12!GO:0010467;gene expression;2.06909468610905e-12!GO:0005743;mitochondrial inner membrane;2.28842713756898e-12!GO:0005746;mitochondrial respiratory chain;3.05178579121971e-12!GO:0030036;actin cytoskeleton organization and biogenesis;4.25651219610078e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.25651219610078e-12!GO:0019941;modification-dependent protein catabolic process;8.95567042871764e-12!GO:0043632;modification-dependent macromolecule catabolic process;8.95567042871764e-12!GO:0043687;post-translational protein modification;9.84300757758534e-12!GO:0044257;cellular protein catabolic process;1.07802549391823e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20915194592227e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.21704855101908e-11!GO:0044265;cellular macromolecule catabolic process;1.61052062630048e-11!GO:0006605;protein targeting;2.4842794231386e-11!GO:0044451;nucleoplasm part;2.64451395338434e-11!GO:0044455;mitochondrial membrane part;2.72980256479431e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.72980256479431e-11!GO:0003954;NADH dehydrogenase activity;2.72980256479431e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.72980256479431e-11!GO:0006461;protein complex assembly;3.53188175194499e-11!GO:0043228;non-membrane-bound organelle;4.64738025341748e-11!GO:0043232;intracellular non-membrane-bound organelle;4.64738025341748e-11!GO:0048193;Golgi vesicle transport;5.3146032877036e-11!GO:0015935;small ribosomal subunit;5.70915284247345e-11!GO:0016310;phosphorylation;7.02965452274072e-11!GO:0022618;protein-RNA complex assembly;1.16904579552564e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.38207020208548e-10!GO:0043285;biopolymer catabolic process;1.76976660084351e-10!GO:0030029;actin filament-based process;3.92151380225066e-10!GO:0015934;large ribosomal subunit;3.97817177141031e-10!GO:0003712;transcription cofactor activity;4.20963830908953e-10!GO:0044432;endoplasmic reticulum part;4.3990476627445e-10!GO:0006913;nucleocytoplasmic transport;4.96510699586336e-10!GO:0005768;endosome;6.71536408162549e-10!GO:0031982;vesicle;7.73472997586342e-10!GO:0051169;nuclear transport;1.01038244069335e-09!GO:0008092;cytoskeletal protein binding;1.07157707674115e-09!GO:0030163;protein catabolic process;1.63495381324107e-09!GO:0030964;NADH dehydrogenase complex (quinone);1.8309970547971e-09!GO:0045271;respiratory chain complex I;1.8309970547971e-09!GO:0005747;mitochondrial respiratory chain complex I;1.8309970547971e-09!GO:0016874;ligase activity;2.04132847807738e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.25713289058971e-09!GO:0017076;purine nucleotide binding;2.32315565360356e-09!GO:0051246;regulation of protein metabolic process;2.37907964248278e-09!GO:0031410;cytoplasmic vesicle;2.50398283747314e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.03934395816248e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.06107498534331e-09!GO:0042773;ATP synthesis coupled electron transport;3.06107498534331e-09!GO:0006457;protein folding;3.42931919143525e-09!GO:0032553;ribonucleotide binding;3.58826946329748e-09!GO:0032555;purine ribonucleotide binding;3.58826946329748e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.69309811430552e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.90791943735938e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08073077096059e-09!GO:0006512;ubiquitin cycle;4.7089439853565e-09!GO:0007243;protein kinase cascade;4.969478378049e-09!GO:0008565;protein transporter activity;5.16504034565521e-09!GO:0031980;mitochondrial lumen;5.71080129734435e-09!GO:0005759;mitochondrial matrix;5.71080129734435e-09!GO:0005793;ER-Golgi intermediate compartment;5.75243007848542e-09!GO:0044248;cellular catabolic process;6.65766521250201e-09!GO:0006366;transcription from RNA polymerase II promoter;6.76889078071965e-09!GO:0016044;membrane organization and biogenesis;6.78982835063963e-09!GO:0019829;cation-transporting ATPase activity;7.3414239962233e-09!GO:0031988;membrane-bound vesicle;7.47098917499183e-09!GO:0050794;regulation of cellular process;9.37135635436191e-09!GO:0042981;regulation of apoptosis;1.0759421897427e-08!GO:0005635;nuclear envelope;1.11259539395933e-08!GO:0048518;positive regulation of biological process;1.20880000737792e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.21826059470784e-08!GO:0009057;macromolecule catabolic process;1.32459070849513e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.32809344984586e-08!GO:0043067;regulation of programmed cell death;1.48734402728238e-08!GO:0051186;cofactor metabolic process;1.82930339394235e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.90313525462078e-08!GO:0008639;small protein conjugating enzyme activity;2.37049595110622e-08!GO:0048522;positive regulation of cellular process;2.61190191401104e-08!GO:0006950;response to stress;3.55222890277443e-08!GO:0004842;ubiquitin-protein ligase activity;3.77411857436653e-08!GO:0019899;enzyme binding;3.77411857436653e-08!GO:0016462;pyrophosphatase activity;4.12110652810241e-08!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.39123381899555e-08!GO:0016564;transcription repressor activity;4.45674125225876e-08!GO:0008135;translation factor activity, nucleic acid binding;5.26176763906993e-08!GO:0044431;Golgi apparatus part;5.79879518821845e-08!GO:0016817;hydrolase activity, acting on acid anhydrides;6.28786772965177e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.38156724088339e-08!GO:0017111;nucleoside-triphosphatase activity;8.84734394626496e-08!GO:0050789;regulation of biological process;9.4485572369296e-08!GO:0031965;nuclear membrane;1.07051935781066e-07!GO:0031252;leading edge;1.22661237725818e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.23172616977384e-07!GO:0007264;small GTPase mediated signal transduction;1.23390610407236e-07!GO:0016604;nuclear body;1.48642219064904e-07!GO:0005789;endoplasmic reticulum membrane;1.55791851580159e-07!GO:0015986;ATP synthesis coupled proton transport;1.56582785842892e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.56582785842892e-07!GO:0006446;regulation of translational initiation;1.69698333827043e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.71324480379858e-07!GO:0006897;endocytosis;1.80427434658618e-07!GO:0010324;membrane invagination;1.80427434658618e-07!GO:0007242;intracellular signaling cascade;1.80427434658618e-07!GO:0006732;coenzyme metabolic process;2.40688573563941e-07!GO:0005770;late endosome;2.93694181256296e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.93694181256296e-07!GO:0000375;RNA splicing, via transesterification reactions;2.93694181256296e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.93694181256296e-07!GO:0019787;small conjugating protein ligase activity;3.10453870847587e-07!GO:0017038;protein import;3.78728162424376e-07!GO:0006413;translational initiation;5.01092950598581e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.02395425924146e-07!GO:0003743;translation initiation factor activity;5.70567096947598e-07!GO:0043069;negative regulation of programmed cell death;5.95050218456161e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.16853843388554e-07!GO:0043066;negative regulation of apoptosis;8.72678055551967e-07!GO:0051082;unfolded protein binding;1.14073107090128e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14353945248659e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14353945248659e-06!GO:0008361;regulation of cell size;1.65277803896778e-06!GO:0030554;adenyl nucleotide binding;1.73247224179672e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.73514509343505e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73514509343505e-06!GO:0009055;electron carrier activity;1.78056011596355e-06!GO:0031324;negative regulation of cellular metabolic process;1.81263571452825e-06!GO:0003779;actin binding;1.90723770378065e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.0494958485962e-06!GO:0016049;cell growth;2.1150468927696e-06!GO:0006606;protein import into nucleus;2.14759874166823e-06!GO:0032559;adenyl ribonucleotide binding;2.21766074527869e-06!GO:0051170;nuclear import;2.28029292159928e-06!GO:0006916;anti-apoptosis;2.40586614730355e-06!GO:0005524;ATP binding;2.68438644612567e-06!GO:0005761;mitochondrial ribosome;2.69661456770022e-06!GO:0000313;organellar ribosome;2.69661456770022e-06!GO:0016607;nuclear speck;2.73496790783099e-06!GO:0009966;regulation of signal transduction;2.91454901575979e-06!GO:0009060;aerobic respiration;3.15503639691968e-06!GO:0009892;negative regulation of metabolic process;3.28990887114207e-06!GO:0000139;Golgi membrane;3.628707274159e-06!GO:0003714;transcription corepressor activity;3.66488377169799e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.88326285389174e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.88326285389174e-06!GO:0065007;biological regulation;4.15552927728023e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.43982232179546e-06!GO:0006754;ATP biosynthetic process;5.50211602956146e-06!GO:0006753;nucleoside phosphate metabolic process;5.50211602956146e-06!GO:0045333;cellular respiration;5.5693161895372e-06!GO:0016881;acid-amino acid ligase activity;6.39718682389477e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.02364860018935e-06!GO:0009141;nucleoside triphosphate metabolic process;7.26981630604923e-06!GO:0045786;negative regulation of progression through cell cycle;7.95088930902694e-06!GO:0030120;vesicle coat;8.26483661574463e-06!GO:0030662;coated vesicle membrane;8.26483661574463e-06!GO:0009150;purine ribonucleotide metabolic process;8.38562279652449e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.0930039860036e-05!GO:0005730;nucleolus;1.33266369724077e-05!GO:0048475;coated membrane;1.39954038051068e-05!GO:0030117;membrane coat;1.39954038051068e-05!GO:0009056;catabolic process;1.58440998453941e-05!GO:0030695;GTPase regulator activity;1.62424246728599e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.69991232345762e-05!GO:0016481;negative regulation of transcription;1.8537735205058e-05!GO:0044453;nuclear membrane part;1.9085826335522e-05!GO:0042802;identical protein binding;1.94456810685206e-05!GO:0009259;ribonucleotide metabolic process;1.98452336668833e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.0265800248248e-05!GO:0046034;ATP metabolic process;2.44906655187731e-05!GO:0001558;regulation of cell growth;2.49140888717045e-05!GO:0006163;purine nucleotide metabolic process;2.56438137993076e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.83697649377329e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.22299934139061e-05!GO:0005525;GTP binding;3.50570243833623e-05!GO:0006164;purine nucleotide biosynthetic process;3.70742510852628e-05!GO:0006099;tricarboxylic acid cycle;3.73395844183177e-05!GO:0046356;acetyl-CoA catabolic process;3.73395844183177e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.44220286636075e-05!GO:0009260;ribonucleotide biosynthetic process;4.8733968439802e-05!GO:0045259;proton-transporting ATP synthase complex;5.98440090145457e-05!GO:0005083;small GTPase regulator activity;6.87329945259856e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.18779551808841e-05!GO:0003713;transcription coactivator activity;9.12577410710477e-05!GO:0008047;enzyme activator activity;9.39832911832328e-05!GO:0044440;endosomal part;9.49808297691598e-05!GO:0010008;endosome membrane;9.49808297691598e-05!GO:0007010;cytoskeleton organization and biogenesis;0.00010625827786268!GO:0009615;response to virus;0.000109221776682106!GO:0048471;perinuclear region of cytoplasm;0.000110503169452627!GO:0051674;localization of cell;0.000116574438469371!GO:0006928;cell motility;0.000116574438469371!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000119180960737636!GO:0006613;cotranslational protein targeting to membrane;0.000120101884537618!GO:0032446;protein modification by small protein conjugation;0.000123395521806705!GO:0005774;vacuolar membrane;0.000128159482600431!GO:0009967;positive regulation of signal transduction;0.000136657665913869!GO:0016567;protein ubiquitination;0.000142301312585499!GO:0016563;transcription activator activity;0.000147381455544461!GO:0005643;nuclear pore;0.000152738306132173!GO:0005791;rough endoplasmic reticulum;0.000161398534802665!GO:0000151;ubiquitin ligase complex;0.000170098154494654!GO:0032561;guanyl ribonucleotide binding;0.000180823677576538!GO:0019001;guanyl nucleotide binding;0.000180823677576538!GO:0051188;cofactor biosynthetic process;0.000181051707773854!GO:0004298;threonine endopeptidase activity;0.00018803468407694!GO:0016197;endosome transport;0.000192542020325204!GO:0006084;acetyl-CoA metabolic process;0.000209615430484587!GO:0003924;GTPase activity;0.000214676384480797!GO:0007265;Ras protein signal transduction;0.000237718779155954!GO:0006259;DNA metabolic process;0.000240296760538575!GO:0030027;lamellipodium;0.00024092452057078!GO:0045892;negative regulation of transcription, DNA-dependent;0.00036559545367735!GO:0001726;ruffle;0.000372173056516894!GO:0007167;enzyme linked receptor protein signaling pathway;0.000376633891424294!GO:0016887;ATPase activity;0.000382113580987785!GO:0040008;regulation of growth;0.000396911042621692!GO:0005798;Golgi-associated vesicle;0.000396911042621692!GO:0005765;lysosomal membrane;0.000404870599129342!GO:0051187;cofactor catabolic process;0.000428820842348064!GO:0043566;structure-specific DNA binding;0.000444335114873662!GO:0009109;coenzyme catabolic process;0.000452310547887354!GO:0005096;GTPase activator activity;0.000483683957379062!GO:0030532;small nuclear ribonucleoprotein complex;0.000484081949001415!GO:0005769;early endosome;0.000487525543737906!GO:0051789;response to protein stimulus;0.000527354659748787!GO:0006986;response to unfolded protein;0.000527354659748787!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000551204739695321!GO:0048468;cell development;0.00057754410450771!GO:0009108;coenzyme biosynthetic process;0.000624285928315637!GO:0005100;Rho GTPase activator activity;0.000625898128736733!GO:0005885;Arp2/3 protein complex;0.000641197400354469!GO:0051128;regulation of cellular component organization and biogenesis;0.000641197400354469!GO:0030133;transport vesicle;0.000658806879872426!GO:0000245;spliceosome assembly;0.000659014300153449!GO:0044437;vacuolar part;0.0006692455960095!GO:0030041;actin filament polymerization;0.0006839709900195!GO:0045926;negative regulation of growth;0.00069749505454789!GO:0065009;regulation of a molecular function;0.000703537042837553!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000704857811774656!GO:0015399;primary active transmembrane transporter activity;0.000704857811774656!GO:0042623;ATPase activity, coupled;0.000726123021363853!GO:0008283;cell proliferation;0.000772041882338991!GO:0008154;actin polymerization and/or depolymerization;0.000782923552224683!GO:0045121;lipid raft;0.000816723745200792!GO:0050657;nucleic acid transport;0.000821795951017563!GO:0051236;establishment of RNA localization;0.000821795951017563!GO:0050658;RNA transport;0.000821795951017563!GO:0006403;RNA localization;0.000840649737534573!GO:0046930;pore complex;0.000963164646405025!GO:0031902;late endosome membrane;0.000963164646405025!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00103668443030207!GO:0006417;regulation of translation;0.00105207613529719!GO:0006752;group transfer coenzyme metabolic process;0.00109288995239517!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00113392459985783!GO:0019843;rRNA binding;0.00114711602004751!GO:0019904;protein domain specific binding;0.00117549684270717!GO:0030308;negative regulation of cell growth;0.00119581015416529!GO:0045792;negative regulation of cell size;0.00120599598231124!GO:0005788;endoplasmic reticulum lumen;0.00120599598231124!GO:0030867;rough endoplasmic reticulum membrane;0.00129052585607669!GO:0060090;molecular adaptor activity;0.00129639810135425!GO:0043065;positive regulation of apoptosis;0.0014262828398079!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00145876775274164!GO:0045893;positive regulation of transcription, DNA-dependent;0.00150548317998801!GO:0006091;generation of precursor metabolites and energy;0.00155144077165982!GO:0008286;insulin receptor signaling pathway;0.001650427796919!GO:0005905;coated pit;0.00165369986201963!GO:0009893;positive regulation of metabolic process;0.00165991947507465!GO:0008654;phospholipid biosynthetic process;0.00167504004115344!GO:0045941;positive regulation of transcription;0.00175155142476552!GO:0016491;oxidoreductase activity;0.00181866210757584!GO:0043623;cellular protein complex assembly;0.00181866210757584!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00181866210757584!GO:0004576;oligosaccharyl transferase activity;0.00182004943659556!GO:0043068;positive regulation of programmed cell death;0.00184765941144511!GO:0051726;regulation of cell cycle;0.00186337049662384!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186337049662384!GO:0006468;protein amino acid phosphorylation;0.00196169669578872!GO:0006612;protein targeting to membrane;0.00198032385184775!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00198923092049935!GO:0003697;single-stranded DNA binding;0.00198923092049935!GO:0043492;ATPase activity, coupled to movement of substances;0.00200520347169281!GO:0016301;kinase activity;0.0020169778493306!GO:0005667;transcription factor complex;0.00212332138686359!GO:0008250;oligosaccharyl transferase complex;0.00218643858968549!GO:0016070;RNA metabolic process;0.00231460766728016!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00232457779526334!GO:0000074;regulation of progression through cell cycle;0.00233095815588394!GO:0033673;negative regulation of kinase activity;0.0024975504768165!GO:0006469;negative regulation of protein kinase activity;0.0024975504768165!GO:0006643;membrane lipid metabolic process;0.00253042594431583!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.002547438313399!GO:0030100;regulation of endocytosis;0.00268947506778212!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00272049072571138!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00282692535012093!GO:0050900;leukocyte migration;0.00283016842713173!GO:0005057;receptor signaling protein activity;0.00302359060985722!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00317834827624526!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00317834827624526!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00317834827624526!GO:0030118;clathrin coat;0.00317834827624526!GO:0065002;intracellular protein transport across a membrane;0.00329107896078946!GO:0046983;protein dimerization activity;0.00338839408706395!GO:0032940;secretion by cell;0.00338839408706395!GO:0045045;secretory pathway;0.00343434400504287!GO:0016791;phosphoric monoester hydrolase activity;0.00358182545170981!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00365917083092948!GO:0030031;cell projection biogenesis;0.00371381968018534!GO:0005741;mitochondrial outer membrane;0.00375581867686228!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00379813512328942!GO:0007229;integrin-mediated signaling pathway;0.00384407057032259!GO:0016311;dephosphorylation;0.00405632641902156!GO:0051028;mRNA transport;0.00408343678751012!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00415942865243106!GO:0005070;SH3/SH2 adaptor activity;0.00420708120211155!GO:0046456;icosanoid biosynthetic process;0.00421129287360898!GO:0051168;nuclear export;0.00425356548859754!GO:0051427;hormone receptor binding;0.00446938575479304!GO:0006650;glycerophospholipid metabolic process;0.00452629800346989!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00454418319814178!GO:0051348;negative regulation of transferase activity;0.00457307461980595!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00463210463562157!GO:0006402;mRNA catabolic process;0.00470012152756711!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00484261702776576!GO:0009117;nucleotide metabolic process;0.00498599121812802!GO:0001944;vasculature development;0.00500851309096181!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00528742427160786!GO:0006693;prostaglandin metabolic process;0.00533936345898226!GO:0006692;prostanoid metabolic process;0.00533936345898226!GO:0030139;endocytic vesicle;0.00534664147947759!GO:0000902;cell morphogenesis;0.00550862728123714!GO:0032989;cellular structure morphogenesis;0.00550862728123714!GO:0003690;double-stranded DNA binding;0.00551848514303693!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00553924671070705!GO:0051920;peroxiredoxin activity;0.00566851019273892!GO:0019867;outer membrane;0.00598778791566351!GO:0016568;chromatin modification;0.00607090740953715!GO:0001568;blood vessel development;0.00608720861222866!GO:0031968;organelle outer membrane;0.00622037223222592!GO:0006323;DNA packaging;0.00639954099369614!GO:0051270;regulation of cell motility;0.00648104614946337!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00665084962588622!GO:0006917;induction of apoptosis;0.00665180218027969!GO:0001666;response to hypoxia;0.00687632010567191!GO:0035257;nuclear hormone receptor binding;0.00719951166362269!GO:0007266;Rho protein signal transduction;0.00726598220831111!GO:0002376;immune system process;0.00727331040888874!GO:0003676;nucleic acid binding;0.0073479022475476!GO:0045454;cell redox homeostasis;0.00742383136425984!GO:0004721;phosphoprotein phosphatase activity;0.00742383136425984!GO:0017166;vinculin binding;0.00822493683892193!GO:0051049;regulation of transport;0.00843175025104726!GO:0050828;regulation of liquid surface tension;0.0090339184327788!GO:0004674;protein serine/threonine kinase activity;0.00955340945213985!GO:0012502;induction of programmed cell death;0.00959907025593781!GO:0019838;growth factor binding;0.00961254894629102!GO:0007040;lysosome organization and biogenesis;0.00979659864976071!GO:0006644;phospholipid metabolic process;0.00980075983396698!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00981376881565908!GO:0015980;energy derivation by oxidation of organic compounds;0.0098376055188001!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00987364920043791!GO:0004812;aminoacyl-tRNA ligase activity;0.00987364920043791!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00987364920043791!GO:0005912;adherens junction;0.0102976930616906!GO:0030658;transport vesicle membrane;0.0105526575205089!GO:0006470;protein amino acid dephosphorylation;0.0106103012247439!GO:0055092;sterol homeostasis;0.0107439761556379!GO:0042632;cholesterol homeostasis;0.0107439761556379!GO:0001516;prostaglandin biosynthetic process;0.0107470837436299!GO:0046457;prostanoid biosynthetic process;0.0107470837436299!GO:0031326;regulation of cellular biosynthetic process;0.0107640652236031!GO:0005762;mitochondrial large ribosomal subunit;0.0111678804322522!GO:0000315;organellar large ribosomal subunit;0.0111678804322522!GO:0018193;peptidyl-amino acid modification;0.0114396102734574!GO:0043488;regulation of mRNA stability;0.0114967597039046!GO:0043487;regulation of RNA stability;0.0114967597039046!GO:0030132;clathrin coat of coated pit;0.0116304401899809!GO:0048660;regulation of smooth muscle cell proliferation;0.0117504314644238!GO:0001525;angiogenesis;0.0121129211745131!GO:0030134;ER to Golgi transport vesicle;0.0121307088781392!GO:0016740;transferase activity;0.0124146802304016!GO:0040011;locomotion;0.0124715477830112!GO:0007049;cell cycle;0.0128949543230841!GO:0005099;Ras GTPase activator activity;0.0130040815281204!GO:0016787;hydrolase activity;0.0130809700622061!GO:0009889;regulation of biosynthetic process;0.0131267387388261!GO:0048514;blood vessel morphogenesis;0.0131898900174146!GO:0006401;RNA catabolic process;0.0131898900174146!GO:0030659;cytoplasmic vesicle membrane;0.0138485000405344!GO:0006979;response to oxidative stress;0.013909562239016!GO:0048500;signal recognition particle;0.0139469177002989!GO:0050790;regulation of catalytic activity;0.0140078973108418!GO:0045637;regulation of myeloid cell differentiation;0.0140167118070566!GO:0003729;mRNA binding;0.0142987281492727!GO:0008287;protein serine/threonine phosphatase complex;0.0150412876657814!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0151167613700013!GO:0030127;COPII vesicle coat;0.0151167613700013!GO:0012507;ER to Golgi transport vesicle membrane;0.0151167613700013!GO:0018196;peptidyl-asparagine modification;0.0151167613700013!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0151167613700013!GO:0006607;NLS-bearing substrate import into nucleus;0.0155682643753987!GO:0030119;AP-type membrane coat adaptor complex;0.0156948872190446!GO:0006818;hydrogen transport;0.0158100685110911!GO:0040012;regulation of locomotion;0.0159001568325949!GO:0051271;negative regulation of cell motility;0.0162333113968858!GO:0015992;proton transport;0.0162491672208984!GO:0007033;vacuole organization and biogenesis;0.0165100929667018!GO:0004672;protein kinase activity;0.0165514471716574!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0167222448685798!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0174529687934022!GO:0005048;signal sequence binding;0.0174530581271084!GO:0051252;regulation of RNA metabolic process;0.0174796075100028!GO:0016584;nucleosome positioning;0.0174850888151111!GO:0043038;amino acid activation;0.0182697853243045!GO:0006418;tRNA aminoacylation for protein translation;0.0182697853243045!GO:0043039;tRNA aminoacylation;0.0182697853243045!GO:0055088;lipid homeostasis;0.0182819827953353!GO:0030155;regulation of cell adhesion;0.0182819827953353!GO:0009611;response to wounding;0.0185008575432489!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0185919527607016!GO:0033043;regulation of organelle organization and biogenesis;0.0185919527607016!GO:0030131;clathrin adaptor complex;0.0189684386617722!GO:0006516;glycoprotein catabolic process;0.0192601165057534!GO:0012506;vesicle membrane;0.0193033794803904!GO:0005813;centrosome;0.0195082679348067!GO:0022890;inorganic cation transmembrane transporter activity;0.0195179896415263!GO:0001889;liver development;0.019918591108136!GO:0008026;ATP-dependent helicase activity;0.0201138690212109!GO:0043021;ribonucleoprotein binding;0.021237128726056!GO:0045603;positive regulation of endothelial cell differentiation;0.0212603229645561!GO:0006891;intra-Golgi vesicle-mediated transport;0.021797876963655!GO:0001725;stress fiber;0.0223467115364969!GO:0032432;actin filament bundle;0.0223467115364969!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0223862374864031!GO:0004386;helicase activity;0.0224416420442215!GO:0031325;positive regulation of cellular metabolic process;0.0224875594746839!GO:0006509;membrane protein ectodomain proteolysis;0.0225220564129971!GO:0033619;membrane protein proteolysis;0.0225220564129971!GO:0003724;RNA helicase activity;0.0225790919314227!GO:0006611;protein export from nucleus;0.0225821990622454!GO:0006892;post-Golgi vesicle-mediated transport;0.0225821990622454!GO:0048487;beta-tubulin binding;0.0226882481428198!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0227156186467335!GO:0051235;maintenance of localization;0.0227210188728046!GO:0051287;NAD binding;0.0229055810753274!GO:0051020;GTPase binding;0.0229739542241424!GO:0044255;cellular lipid metabolic process;0.0229739542241424!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0229825959647679!GO:0005938;cell cortex;0.0232402529846404!GO:0007005;mitochondrion organization and biogenesis;0.0232897322501145!GO:0030674;protein binding, bridging;0.0237602359552881!GO:0046822;regulation of nucleocytoplasmic transport;0.0237602359552881!GO:0006414;translational elongation;0.0240400738704013!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0244423073030228!GO:0015002;heme-copper terminal oxidase activity;0.0244423073030228!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0244423073030228!GO:0004129;cytochrome-c oxidase activity;0.0244423073030228!GO:0050811;GABA receptor binding;0.0253517288983676!GO:0031901;early endosome membrane;0.0253517288983676!GO:0016859;cis-trans isomerase activity;0.0254426444352434!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0255995714851168!GO:0007162;negative regulation of cell adhesion;0.0255995714851168!GO:0006672;ceramide metabolic process;0.025665692757524!GO:0030660;Golgi-associated vesicle membrane;0.0266014652845926!GO:0008139;nuclear localization sequence binding;0.0270783397124997!GO:0031349;positive regulation of defense response;0.0271774282820039!GO:0050729;positive regulation of inflammatory response;0.0271774282820039!GO:0022415;viral reproductive process;0.0275990753615668!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0277095034862615!GO:0045047;protein targeting to ER;0.0277095034862615!GO:0004185;serine carboxypeptidase activity;0.0282482504300492!GO:0003702;RNA polymerase II transcription factor activity;0.0282482504300492!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0287800363487964!GO:0004860;protein kinase inhibitor activity;0.0288334134614912!GO:0008610;lipid biosynthetic process;0.0290276445651903!GO:0008305;integrin complex;0.0292632898696529!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0298476042905566!GO:0044433;cytoplasmic vesicle part;0.0300064928785272!GO:0002253;activation of immune response;0.0301493827384775!GO:0043407;negative regulation of MAP kinase activity;0.0304670657579917!GO:0051101;regulation of DNA binding;0.0304734053220373!GO:0046467;membrane lipid biosynthetic process;0.0310894889745265!GO:0004722;protein serine/threonine phosphatase activity;0.0312431735948477!GO:0008234;cysteine-type peptidase activity;0.0316337480971497!GO:0042127;regulation of cell proliferation;0.0317909520548501!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0317909520548501!GO:0017048;Rho GTPase binding;0.0317909520548501!GO:0030833;regulation of actin filament polymerization;0.0321033801645476!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0327296602236871!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0329572054933094!GO:0004177;aminopeptidase activity;0.0331049828535398!GO:0051338;regulation of transferase activity;0.0333546586079876!GO:0000059;protein import into nucleus, docking;0.0334789983416353!GO:0015630;microtubule cytoskeleton;0.0334915464267744!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0339133820538283!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0339133820538283!GO:0030663;COPI coated vesicle membrane;0.0340083609299459!GO:0030126;COPI vesicle coat;0.0340083609299459!GO:0003725;double-stranded RNA binding;0.0351074910491762!GO:0040013;negative regulation of locomotion;0.0352746359955359!GO:0009607;response to biotic stimulus;0.036258631500104!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0367042540448363!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0367042540448363!GO:0065004;protein-DNA complex assembly;0.0373913443732116!GO:0046474;glycerophospholipid biosynthetic process;0.0373913443732116!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0375658977955947!GO:0007034;vacuolar transport;0.0380934126053529!GO:0048659;smooth muscle cell proliferation;0.0382350944458952!GO:0031589;cell-substrate adhesion;0.0387430043264421!GO:0030125;clathrin vesicle coat;0.0390254508111057!GO:0030665;clathrin coated vesicle membrane;0.0390254508111057!GO:0004197;cysteine-type endopeptidase activity;0.0390254508111057!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0394372299169075!GO:0015629;actin cytoskeleton;0.0401299850860259!GO:0004563;beta-N-acetylhexosaminidase activity;0.0401299850860259!GO:0031267;small GTPase binding;0.0401299850860259!GO:0006026;aminoglycan catabolic process;0.0401299850860259!GO:0006027;glycosaminoglycan catabolic process;0.0401299850860259!GO:0000314;organellar small ribosomal subunit;0.0401703749842958!GO:0005763;mitochondrial small ribosomal subunit;0.0401703749842958!GO:0035035;histone acetyltransferase binding;0.0404420926655931!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.041009858863597!GO:0005637;nuclear inner membrane;0.0423744053939883!GO:0030832;regulation of actin filament length;0.0436026570391113!GO:0006898;receptor-mediated endocytosis;0.0444985571054851!GO:0045730;respiratory burst;0.0446387009602957!GO:0017091;AU-rich element binding;0.0450598199578232!GO:0050779;RNA destabilization;0.0450598199578232!GO:0000289;poly(A) tail shortening;0.0450598199578232!GO:0007041;lysosomal transport;0.0450598199578232!GO:0051248;negative regulation of protein metabolic process;0.0460090215958571!GO:0051087;chaperone binding;0.0466104409356388!GO:0032535;regulation of cellular component size;0.0471125991014625!GO:0008147;structural constituent of bone;0.0474826402584135!GO:0030384;phosphoinositide metabolic process;0.0475063158793463!GO:0030176;integral to endoplasmic reticulum membrane;0.0475973445462229!GO:0019834;phospholipase A2 inhibitor activity;0.0480489286538026!GO:0006633;fatty acid biosynthetic process;0.0480971283349039!GO:0006954;inflammatory response;0.0485860936905861!GO:0042254;ribosome biogenesis and assembly;0.0486033485618083!GO:0006690;icosanoid metabolic process;0.0486033485618083!GO:0045639;positive regulation of myeloid cell differentiation;0.0488120897115108!GO:0051015;actin filament binding;0.0488120897115108!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0490498942987631!GO:0046813;virion attachment, binding of host cell surface receptor;0.0490498942987631!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0490498942987631!GO:0006333;chromatin assembly or disassembly;0.0493889909261358!GO:0045646;regulation of erythrocyte differentiation;0.0493889909261358 | |||
|sample_id=10075 | |sample_id=10075 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=T:2.67750437093;EP300:2.54244965207;FOXA2:2.43394823451;HBP1_HMGB_SSRP1_UBTF:2.36518028195;RBPJ:2.18031464392;PRDM1:1.9726048157;HMX1:1.84943300332;SP1:1.62084475801;FOXD3:1.53140835867;TLX2:1.51823023672;MAZ:1.47277677713;FOX{D1,D2}:1.45668501446;TFCP2:1.45351464545;STAT2,4,6:1.42972036218;NKX3-2:1.42344225595;PAX6:1.42331804474;FOXP1:1.42173397669;GATA4:1.39970601513;IKZF2:1.37848811707;FOXO1,3,4:1.37379684021;RFX2..5_RFXANK_RFXAP:1.36914471952;FOX{I1,J2}:1.3269483109;AR:1.31820426104;TFAP2{A,C}:1.31410745036;NFATC1..3:1.27171855213;ETS1,2:1.2627019212;TOPORS:1.23175829982;IRF7:1.2276421346;SPZ1:1.21595923767;IRF1,2:1.17734731959;TFAP4:1.16356109261;TLX1..3_NFIC{dimer}:1.16257099427;HIC1:1.16081635297;AIRE:1.15729661245;XCPE1{core}:1.10169719712;MTE{core}:1.07915954504;SNAI1..3:1.07536667327;MED-1{core}:1.05828716778;GZF1:1.03209756147;ZEB1:0.990411819582;MTF1:0.985009817604;TFAP2B:0.983262933256;HAND1,2:0.970134892776;MZF1:0.94719128182;PITX1..3:0.936098668883;ZNF384:0.891799733814;BPTF:0.885437304798;PATZ1:0.877354414246;HOX{A6,A7,B6,B7}:0.836482231206;CDX1,2,4:0.810369966773;SMAD1..7,9:0.809870212122;FOX{F1,F2,J1}:0.791215869915;ESR1:0.784276414673;LMO2:0.782215611163;SPI1:0.76925633996;MYFfamily:0.769127692208;TEF:0.753807288422;TBP:0.721403141589;ZFP161:0.716856212711;GTF2I:0.713882012082;EGR1..3:0.68754723462;DMAP1_NCOR{1,2}_SMARC:0.668131944323;HNF4A_NR2F1,2:0.657587783434;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653979223325;POU2F1..3:0.651318690776;FOXN1:0.645171441433;SPIB:0.627490786846;TEAD1:0.621182352087;FOXL1:0.610273283088;TBX4,5:0.599535529197;ELF1,2,4:0.596444837565;RREB1:0.591549748883;ZBTB16:0.579195391065;XBP1:0.55456754315;ALX1:0.540074827991;RXR{A,B,G}:0.532270138801;FOXQ1:0.497091562092;MYBL2:0.491037605809;SRF:0.451552000445;NFIL3:0.437585160193;RFX1:0.427841139981;GLI1..3:0.423388556961;ATF2:0.413745816124;SOX5:0.39687718083;SREBF1,2:0.355476030272;NR6A1:0.355413530579;NR3C1:0.348138380867;PAX5:0.312042953319;NKX3-1:0.287592166125;FOXP3:0.285851561199;MYOD1:0.275138614924;GTF2A1,2:0.274545396071;TGIF1:0.259854651328;IKZF1:0.252425056959;ZNF423:0.245355415565;EBF1:0.200093330393;UFEwm:0.196842021342;ALX4:0.196781802675;HNF1A:0.167432314616;CEBPA,B_DDIT3:0.16491785608;RUNX1..3:0.153624627829;NKX6-1,2:0.143496253727;NFIX:0.143416630555;NR1H4:0.108204734207;ARID5B:0.0713478814093;POU5F1:0.0654161575821;REST:0.0252032216525;BREu{core}:0.0244436654159;RXRA_VDR{dimer}:0.0218131436076;ZIC1..3:0.0200917901839;KLF4:0.01593565393;MEF2{A,B,C,D}:0.00240338068469;ZNF148:-0.0119072506261;TAL1_TCF{3,4,12}:-0.0209587211177;ATF6:-0.0465232572954;GFI1B:-0.0470941725642;GATA6:-0.0621106895104;HMGA1,2:-0.0666440395651;NKX2-3_NKX2-5:-0.0928577581687;HLF:-0.0947315257588;STAT5{A,B}:-0.117748199352;ATF4:-0.151827057443;NANOG:-0.175996243987;STAT1,3:-0.198286205323;GCM1,2:-0.22248628569;SOX{8,9,10}:-0.23392986476;SOX2:-0.305340679416;CDC5L:-0.310648192044;TFDP1:-0.343843826693;NFKB1_REL_RELA:-0.364856554212;HSF1,2:-0.404166751629;DBP:-0.407088364743;LHX3,4:-0.423651475678;JUN:-0.444176783896;CREB1:-0.445665232988;MAFB:-0.450809544104;ATF5_CREB3:-0.453472139252;NKX2-1,4:-0.459011132757;TP53:-0.461099742013;PPARG:-0.466362089947;EVI1:-0.472745951225;POU3F1..4:-0.530533712686;POU1F1:-0.531506864417;NHLH1,2:-0.544307716598;PAX8:-0.548157987306;AHR_ARNT_ARNT2:-0.565276516888;ZNF238:-0.583330711955;PAX2:-0.591878180925;NANOG{mouse}:-0.662672428301;NFE2L1:-0.702125853186;ZBTB6:-0.715031037919;CUX2:-0.715509626149;FOSL2:-0.738877785953;GFI1:-0.741642429487;ONECUT1,2:-0.743232506365;EN1,2:-0.769118435226;PAX4:-0.788622319248;HIF1A:-0.838812308228;HES1:-0.849574827799;HOX{A4,D4}:-0.850647697598;NFE2:-0.856455268721;ZNF143:-0.887842480288;FOS_FOS{B,L1}_JUN{B,D}:-0.978438654492;PAX3,7:-0.988451770766;PAX1,9:-0.993355356008;PRRX1,2:-0.995577336352;NR5A1,2:-1.06291062288;BACH2:-1.06687063993;NFY{A,B,C}:-1.09508770102;NRF1:-1.09566524142;NFE2L2:-1.10410178979;PBX1:-1.10659343958;OCT4_SOX2{dimer}:-1.15493987139;NKX2-2,8:-1.18001474358;HOXA9_MEIS1:-1.2095836964;POU6F1:-1.22137511159;E2F1..5:-1.24799162201;bHLH_family:-1.29468058772;HOX{A5,B5}:-1.31052954398;ESRRA:-1.33277299076;LEF1_TCF7_TCF7L1,2:-1.39308146125;SOX17:-1.46088139845;MYB:-1.50105749357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.54664940342;FOXM1:-1.58948483212;CRX:-1.63433595765;ADNP_IRX_SIX_ZHX:-1.64025395809;ELK1,4_GABP{A,B1}:-1.68792358782;VSX1,2:-1.78545933958;RORA:-1.87231809356;PDX1:-1.91404920707;YY1:-1.97523221842 | |top_motifs=T:2.67750437093;EP300:2.54244965207;FOXA2:2.43394823451;HBP1_HMGB_SSRP1_UBTF:2.36518028195;RBPJ:2.18031464392;PRDM1:1.9726048157;HMX1:1.84943300332;SP1:1.62084475801;FOXD3:1.53140835867;TLX2:1.51823023672;MAZ:1.47277677713;FOX{D1,D2}:1.45668501446;TFCP2:1.45351464545;STAT2,4,6:1.42972036218;NKX3-2:1.42344225595;PAX6:1.42331804474;FOXP1:1.42173397669;GATA4:1.39970601513;IKZF2:1.37848811707;FOXO1,3,4:1.37379684021;RFX2..5_RFXANK_RFXAP:1.36914471952;FOX{I1,J2}:1.3269483109;AR:1.31820426104;TFAP2{A,C}:1.31410745036;NFATC1..3:1.27171855213;ETS1,2:1.2627019212;TOPORS:1.23175829982;IRF7:1.2276421346;SPZ1:1.21595923767;IRF1,2:1.17734731959;TFAP4:1.16356109261;TLX1..3_NFIC{dimer}:1.16257099427;HIC1:1.16081635297;AIRE:1.15729661245;XCPE1{core}:1.10169719712;MTE{core}:1.07915954504;SNAI1..3:1.07536667327;MED-1{core}:1.05828716778;GZF1:1.03209756147;ZEB1:0.990411819582;MTF1:0.985009817604;TFAP2B:0.983262933256;HAND1,2:0.970134892776;MZF1:0.94719128182;PITX1..3:0.936098668883;ZNF384:0.891799733814;BPTF:0.885437304798;PATZ1:0.877354414246;HOX{A6,A7,B6,B7}:0.836482231206;CDX1,2,4:0.810369966773;SMAD1..7,9:0.809870212122;FOX{F1,F2,J1}:0.791215869915;ESR1:0.784276414673;LMO2:0.782215611163;SPI1:0.76925633996;MYFfamily:0.769127692208;TEF:0.753807288422;TBP:0.721403141589;ZFP161:0.716856212711;GTF2I:0.713882012082;EGR1..3:0.68754723462;DMAP1_NCOR{1,2}_SMARC:0.668131944323;HNF4A_NR2F1,2:0.657587783434;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653979223325;POU2F1..3:0.651318690776;FOXN1:0.645171441433;SPIB:0.627490786846;TEAD1:0.621182352087;FOXL1:0.610273283088;TBX4,5:0.599535529197;ELF1,2,4:0.596444837565;RREB1:0.591549748883;ZBTB16:0.579195391065;XBP1:0.55456754315;ALX1:0.540074827991;RXR{A,B,G}:0.532270138801;FOXQ1:0.497091562092;MYBL2:0.491037605809;SRF:0.451552000445;NFIL3:0.437585160193;RFX1:0.427841139981;GLI1..3:0.423388556961;ATF2:0.413745816124;SOX5:0.39687718083;SREBF1,2:0.355476030272;NR6A1:0.355413530579;NR3C1:0.348138380867;PAX5:0.312042953319;NKX3-1:0.287592166125;FOXP3:0.285851561199;MYOD1:0.275138614924;GTF2A1,2:0.274545396071;TGIF1:0.259854651328;IKZF1:0.252425056959;ZNF423:0.245355415565;EBF1:0.200093330393;UFEwm:0.196842021342;ALX4:0.196781802675;HNF1A:0.167432314616;CEBPA,B_DDIT3:0.16491785608;RUNX1..3:0.153624627829;NKX6-1,2:0.143496253727;NFIX:0.143416630555;NR1H4:0.108204734207;ARID5B:0.0713478814093;POU5F1:0.0654161575821;REST:0.0252032216525;BREu{core}:0.0244436654159;RXRA_VDR{dimer}:0.0218131436076;ZIC1..3:0.0200917901839;KLF4:0.01593565393;MEF2{A,B,C,D}:0.00240338068469;ZNF148:-0.0119072506261;TAL1_TCF{3,4,12}:-0.0209587211177;ATF6:-0.0465232572954;GFI1B:-0.0470941725642;GATA6:-0.0621106895104;HMGA1,2:-0.0666440395651;NKX2-3_NKX2-5:-0.0928577581687;HLF:-0.0947315257588;STAT5{A,B}:-0.117748199352;ATF4:-0.151827057443;NANOG:-0.175996243987;STAT1,3:-0.198286205323;GCM1,2:-0.22248628569;SOX{8,9,10}:-0.23392986476;SOX2:-0.305340679416;CDC5L:-0.310648192044;TFDP1:-0.343843826693;NFKB1_REL_RELA:-0.364856554212;HSF1,2:-0.404166751629;DBP:-0.407088364743;LHX3,4:-0.423651475678;JUN:-0.444176783896;CREB1:-0.445665232988;MAFB:-0.450809544104;ATF5_CREB3:-0.453472139252;NKX2-1,4:-0.459011132757;TP53:-0.461099742013;PPARG:-0.466362089947;EVI1:-0.472745951225;POU3F1..4:-0.530533712686;POU1F1:-0.531506864417;NHLH1,2:-0.544307716598;PAX8:-0.548157987306;AHR_ARNT_ARNT2:-0.565276516888;ZNF238:-0.583330711955;PAX2:-0.591878180925;NANOG{mouse}:-0.662672428301;NFE2L1:-0.702125853186;ZBTB6:-0.715031037919;CUX2:-0.715509626149;FOSL2:-0.738877785953;GFI1:-0.741642429487;ONECUT1,2:-0.743232506365;EN1,2:-0.769118435226;PAX4:-0.788622319248;HIF1A:-0.838812308228;HES1:-0.849574827799;HOX{A4,D4}:-0.850647697598;NFE2:-0.856455268721;ZNF143:-0.887842480288;FOS_FOS{B,L1}_JUN{B,D}:-0.978438654492;PAX3,7:-0.988451770766;PAX1,9:-0.993355356008;PRRX1,2:-0.995577336352;NR5A1,2:-1.06291062288;BACH2:-1.06687063993;NFY{A,B,C}:-1.09508770102;NRF1:-1.09566524142;NFE2L2:-1.10410178979;PBX1:-1.10659343958;OCT4_SOX2{dimer}:-1.15493987139;NKX2-2,8:-1.18001474358;HOXA9_MEIS1:-1.2095836964;POU6F1:-1.22137511159;E2F1..5:-1.24799162201;bHLH_family:-1.29468058772;HOX{A5,B5}:-1.31052954398;ESRRA:-1.33277299076;LEF1_TCF7_TCF7L1,2:-1.39308146125;SOX17:-1.46088139845;MYB:-1.50105749357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.54664940342;FOXM1:-1.58948483212;CRX:-1.63433595765;ADNP_IRX_SIX_ZHX:-1.64025395809;ELK1,4_GABP{A,B1}:-1.68792358782;VSX1,2:-1.78545933958;RORA:-1.87231809356;PDX1:-1.91404920707;YY1:-1.97523221842 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10075-102A3;search_select_hide=table117:FF:10075-102A3 | |||
}} | }} | ||
Latest revision as of 12:20, 3 June 2020
| Name: | lung, right lower lobe, adult, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11786 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11786
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11786
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.235 |
| 10 | 10 | 0.109 |
| 100 | 100 | 0.317 |
| 101 | 101 | 0.379 |
| 102 | 102 | 0.879 |
| 103 | 103 | 0.198 |
| 104 | 104 | 0.433 |
| 105 | 105 | 0.617 |
| 106 | 106 | 0.121 |
| 107 | 107 | 0.0131 |
| 108 | 108 | 0.618 |
| 109 | 109 | 0.132 |
| 11 | 11 | 0.398 |
| 110 | 110 | 0.699 |
| 111 | 111 | 0.767 |
| 112 | 112 | 0.289 |
| 113 | 113 | 0.104 |
| 114 | 114 | 0.681 |
| 115 | 115 | 0.0796 |
| 116 | 116 | 0.782 |
| 117 | 117 | 0.0296 |
| 118 | 118 | 0.13 |
| 119 | 119 | 0.746 |
| 12 | 12 | 0.325 |
| 120 | 120 | 0.111 |
| 121 | 121 | 0.75 |
| 122 | 122 | 0.448 |
| 123 | 123 | 0.17 |
| 124 | 124 | 0.642 |
| 125 | 125 | 0.531 |
| 126 | 126 | 0.553 |
| 127 | 127 | 0.448 |
| 128 | 128 | 0.149 |
| 129 | 129 | 0.0409 |
| 13 | 13 | 0.232 |
| 130 | 130 | 0.315 |
| 131 | 131 | 0.452 |
| 132 | 132 | 0.039 |
| 133 | 133 | 0.147 |
| 134 | 134 | 0.786 |
| 135 | 135 | 0.415 |
| 136 | 136 | 0.215 |
| 137 | 137 | 0.476 |
| 138 | 138 | 0.505 |
| 139 | 139 | 0.587 |
| 14 | 14 | 0.242 |
| 140 | 140 | 0.704 |
| 141 | 141 | 0.206 |
| 142 | 142 | 0.175 |
| 143 | 143 | 0.258 |
| 144 | 144 | 0.818 |
| 145 | 145 | 0.365 |
| 146 | 146 | 0.882 |
| 147 | 147 | 0.715 |
| 148 | 148 | 0.983 |
| 149 | 149 | 0.239 |
| 15 | 15 | 0.287 |
| 150 | 150 | 0.982 |
| 151 | 151 | 0.692 |
| 152 | 152 | 0.0364 |
| 153 | 153 | 0.276 |
| 154 | 154 | 0.608 |
| 155 | 155 | 0.914 |
| 156 | 156 | 0.189 |
| 157 | 157 | 0.563 |
| 158 | 158 | 0.916 |
| 159 | 159 | 0.394 |
| 16 | 16 | 0.752 |
| 160 | 160 | 0.894 |
| 161 | 161 | 0.136 |
| 162 | 162 | 0.241 |
| 163 | 163 | 0.0972 |
| 164 | 164 | 0.316 |
| 165 | 165 | 0.0233 |
| 166 | 166 | 0.806 |
| 167 | 167 | 0.036 |
| 168 | 168 | 0.58 |
| 169 | 169 | 0.248 |
| 17 | 17 | 0.861 |
| 18 | 18 | 0.0144 |
| 19 | 19 | 0.299 |
| 2 | 2 | 0.028 |
| 20 | 20 | 0.156 |
| 21 | 21 | 0.702 |
| 22 | 22 | 0.824 |
| 23 | 23 | 0.204 |
| 24 | 24 | 0.868 |
| 25 | 25 | 0.323 |
| 26 | 26 | 0.717 |
| 27 | 27 | 0.611 |
| 28 | 28 | 0.968 |
| 29 | 29 | 0.0479 |
| 3 | 3 | 0.855 |
| 30 | 30 | 0.11 |
| 31 | 31 | 0.846 |
| 32 | 32 | 0.953 |
| 33 | 33 | 0.227 |
| 34 | 34 | 0.107 |
| 35 | 35 | 0.415 |
| 36 | 36 | 0.119 |
| 37 | 37 | 0.468 |
| 38 | 38 | 0.646 |
| 39 | 39 | 0.076 |
| 4 | 4 | 0.0439 |
| 40 | 40 | 0.205 |
| 41 | 41 | 0.166 |
| 42 | 42 | 0.414 |
| 43 | 43 | 0.736 |
| 44 | 44 | 0.423 |
| 45 | 45 | 0.177 |
| 46 | 46 | 0.538 |
| 47 | 47 | 0.249 |
| 48 | 48 | 0.265 |
| 49 | 49 | 0.348 |
| 5 | 5 | 0.377 |
| 50 | 50 | 0.486 |
| 51 | 51 | 0.711 |
| 52 | 52 | 0.094 |
| 53 | 53 | 0.457 |
| 54 | 54 | 0.818 |
| 55 | 55 | 0.525 |
| 56 | 56 | 0.82 |
| 57 | 57 | 0.381 |
| 58 | 58 | 0.988 |
| 59 | 59 | 0.698 |
| 6 | 6 | 0.514 |
| 60 | 60 | 0.271 |
| 61 | 61 | 0.911 |
| 62 | 62 | 0.542 |
| 63 | 63 | 0.61 |
| 64 | 64 | 0.367 |
| 65 | 65 | 0.389 |
| 66 | 66 | 1.53588e-4 |
| 67 | 67 | 0.877 |
| 68 | 68 | 0.474 |
| 69 | 69 | 0.691 |
| 7 | 7 | 0.508 |
| 70 | 70 | 0.846 |
| 71 | 71 | 0.324 |
| 72 | 72 | 0.965 |
| 73 | 73 | 0.626 |
| 74 | 74 | 0.322 |
| 75 | 75 | 0.0104 |
| 76 | 76 | 0.204 |
| 77 | 77 | 0.0736 |
| 78 | 78 | 0.451 |
| 79 | 79 | 0.531 |
| 8 | 8 | 0.894 |
| 80 | 80 | 0.776 |
| 81 | 81 | 0.728 |
| 82 | 82 | 0.39 |
| 83 | 83 | 0.91 |
| 84 | 84 | 0.869 |
| 85 | 85 | 0.226 |
| 86 | 86 | 0.548 |
| 87 | 87 | 0.0296 |
| 88 | 88 | 0.519 |
| 89 | 89 | 0.842 |
| 9 | 9 | 0.384 |
| 90 | 90 | 0.0241 |
| 91 | 91 | 0.659 |
| 92 | 92 | 0.619 |
| 93 | 93 | 0.031 |
| 94 | 94 | 0.552 |
| 95 | 95 | 0.191 |
| 96 | 96 | 0.504 |
| 97 | 97 | 0.952 |
| 98 | 98 | 0.217 |
| 99 | 99 | 0.425 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11786
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010019 human lung - adult sample
UBERON:0002171 lower lobe of right lung
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0002171 (lower lobe of right lung)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0006518 (right lung lobe)
0008949 (lower lobe of lung)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000101 (lobe of lung)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0002167 (right lung)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010019 (human lung - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
