FF:10189-103D9: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	appendix, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12842
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	29
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234006-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005897

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12842		CAGE		DRX008620		DRR009492

Accession ID Hg19

Library id		BAM		CTSS
CNhs12842		DRZ000917		DRZ002302

Accession ID Hg38

Library id		BAM		CTSS
CNhs12842		DRZ012267		DRZ013652

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.144
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.191
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.106
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.191
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.3
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.106
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.323
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.467
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.262
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.106
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.106
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.457
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.377
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.35
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0359
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.046
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.106
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.262
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.517
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.284
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.106
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.106
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0497
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.106
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00113
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.467
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0927
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.106
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.106
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0883
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.106
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.363
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.106
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.227
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.425
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.262
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.106
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.106
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12842

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.332
MA0003.1	MA0003.1	0.178
MA0004.1	MA0004.1	0.121
MA0006.1	MA0006.1	0.309
MA0007.1	MA0007.1	0.549
MA0009.1	MA0009.1	0.896
MA0014.1	MA0014.1	0.317
MA0017.1	MA0017.1	0.175
MA0018.2	MA0018.2	0.998
MA0019.1	MA0019.1	0.314
MA0024.1	MA0024.1	0.106
MA0025.1	MA0025.1	0.865
MA0027.1	MA0027.1	0.402
MA0028.1	MA0028.1	0.195
MA0029.1	MA0029.1	0.184
MA0030.1	MA0030.1	0.00382
MA0031.1	MA0031.1	0.0777
MA0035.2	MA0035.2	0.415
MA0038.1	MA0038.1	0.374
MA0039.2	MA0039.2	0.188
MA0040.1	MA0040.1	0.946
MA0041.1	MA0041.1	0.908
MA0042.1	MA0042.1	0.565
MA0043.1	MA0043.1	0.409
MA0046.1	MA0046.1	3.65488e-10
MA0047.2	MA0047.2	0.0572
MA0048.1	MA0048.1	0.0308
MA0050.1	MA0050.1	9.52587e-11
MA0051.1	MA0051.1	8.22093e-6
MA0052.1	MA0052.1	0.0703
MA0055.1	MA0055.1	6.57389e-4
MA0057.1	MA0057.1	0.966
MA0058.1	MA0058.1	0.0563
MA0059.1	MA0059.1	0.00115
MA0060.1	MA0060.1	0.539
MA0061.1	MA0061.1	0.418
MA0062.2	MA0062.2	0.715
MA0065.2	MA0065.2	0.166
MA0066.1	MA0066.1	0.00127
MA0067.1	MA0067.1	0.278
MA0068.1	MA0068.1	7.14068e-5
MA0069.1	MA0069.1	0.366
MA0070.1	MA0070.1	0.184
MA0071.1	MA0071.1	0.0283
MA0072.1	MA0072.1	0.151
MA0073.1	MA0073.1	0.826
MA0074.1	MA0074.1	0.293
MA0076.1	MA0076.1	0.791
MA0077.1	MA0077.1	0.72
MA0078.1	MA0078.1	0.0775
MA0079.2	MA0079.2	0.0456
MA0080.2	MA0080.2	6.37867e-10
MA0081.1	MA0081.1	0.025
MA0083.1	MA0083.1	0.00117
MA0084.1	MA0084.1	0.274
MA0087.1	MA0087.1	0.349
MA0088.1	MA0088.1	0.0881
MA0090.1	MA0090.1	0.141
MA0091.1	MA0091.1	0.295
MA0092.1	MA0092.1	0.757
MA0093.1	MA0093.1	0.121
MA0099.2	MA0099.2	3.10524e-17
MA0100.1	MA0100.1	0.282
MA0101.1	MA0101.1	0.968
MA0102.2	MA0102.2	0.214
MA0103.1	MA0103.1	0.0544
MA0104.2	MA0104.2	0.00119
MA0105.1	MA0105.1	9.66562e-5
MA0106.1	MA0106.1	0.00181
MA0107.1	MA0107.1	0.748
MA0108.2	MA0108.2	7.99201e-12
MA0111.1	MA0111.1	0.977
MA0112.2	MA0112.2	0.0115
MA0113.1	MA0113.1	0.422
MA0114.1	MA0114.1	0.978
MA0115.1	MA0115.1	0.602
MA0116.1	MA0116.1	0.00769
MA0117.1	MA0117.1	0.187
MA0119.1	MA0119.1	0.0253
MA0122.1	MA0122.1	0.248
MA0124.1	MA0124.1	0.642
MA0125.1	MA0125.1	0.299
MA0131.1	MA0131.1	0.78
MA0135.1	MA0135.1	0.0525
MA0136.1	MA0136.1	2.66906e-9
MA0137.2	MA0137.2	0.0444
MA0138.2	MA0138.2	0.603
MA0139.1	MA0139.1	0.0747
MA0140.1	MA0140.1	0.0629
MA0141.1	MA0141.1	0.00356
MA0142.1	MA0142.1	0.757
MA0143.1	MA0143.1	0.245
MA0144.1	MA0144.1	0.526
MA0145.1	MA0145.1	0.753
MA0146.1	MA0146.1	0.39
MA0147.1	MA0147.1	4.50961e-4
MA0148.1	MA0148.1	0.51
MA0149.1	MA0149.1	0.0741
MA0150.1	MA0150.1	1.37824e-7
MA0152.1	MA0152.1	0.457
MA0153.1	MA0153.1	5.96661e-7
MA0154.1	MA0154.1	0.14
MA0155.1	MA0155.1	0.916
MA0156.1	MA0156.1	2.5227e-6
MA0157.1	MA0157.1	0.768
MA0159.1	MA0159.1	0.0797
MA0160.1	MA0160.1	0.0349
MA0162.1	MA0162.1	0.45
MA0163.1	MA0163.1	2.9967e-8
MA0164.1	MA0164.1	0.289
MA0258.1	MA0258.1	0.0225
MA0259.1	MA0259.1	0.0137

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12842

Novel motif	Logo	P-value
1	1	0.0164
10	10	0.088
100	100	0.1
101	101	0.853
102	102	0.504
103	103	0.12
104	104	0.986
105	105	0.499
106	106	0.563
107	107	0.768
108	108	0.947
109	109	0.0525
11	11	0.111
110	110	0.0969
111	111	0.215
112	112	0.994
113	113	0.232
114	114	0.00105
115	115	0.837
116	116	0.21
117	117	0.0932
118	118	0.0601
119	119	0.865
12	12	0.947
120	120	0.238
121	121	0.514
122	122	0.707
123	123	0.903
124	124	0.885
125	125	0.15
126	126	0.48
127	127	0.587
128	128	0.878
129	129	0.0772
13	13	0.0634
130	130	0.629
131	131	0.618
132	132	0.173
133	133	0.00393
134	134	0.0841
135	135	0.12
136	136	0.936
137	137	0.913
138	138	0.931
139	139	0.137
14	14	0.707
140	140	0.275
141	141	0.276
142	142	0.641
143	143	0.344
144	144	0.897
145	145	0.944
146	146	0.683
147	147	0.575
148	148	0.516
149	149	0.977
15	15	0.0359
150	150	0.321
151	151	0.365
152	152	0.972
153	153	0.881
154	154	0.606
155	155	0.73
156	156	0.298
157	157	0.0436
158	158	0.14
159	159	0.473
16	16	0.0551
160	160	0.325
161	161	0.878
162	162	0.912
163	163	0.51
164	164	0.0301
165	165	0.751
166	166	0.276
167	167	0.0444
168	168	0.0019
169	169	0.11
17	17	0.473
18	18	0.0191
19	19	0.66
2	2	0.1
20	20	0.0704
21	21	0.311
22	22	0.586
23	23	0.944
24	24	0.572
25	25	0.99
26	26	0.298
27	27	0.392
28	28	0.903
29	29	0.0301
3	3	0.357
30	30	0.0954
31	31	0.63
32	32	0.135
33	33	0.152
34	34	0.34
35	35	0.105
36	36	0.0395
37	37	0.0269
38	38	0.737
39	39	0.76
4	4	0.347
40	40	0.101
41	41	0.18
42	42	0.415
43	43	0.119
44	44	0.536
45	45	0.357
46	46	0.0882
47	47	0.113
48	48	0.132
49	49	0.131
5	5	0.263
50	50	0.662
51	51	0.905
52	52	0.451
53	53	0.393
54	54	0.982
55	55	0.6
56	56	0.693
57	57	0.109
58	58	0.774
59	59	0.786
6	6	0.385
60	60	0.944
61	61	0.951
62	62	0.542
63	63	0.355
64	64	0.194
65	65	0.603
66	66	0.0815
67	67	0.225
68	68	0.81
69	69	0.146
7	7	0.66
70	70	0.0172
71	71	0.0308
72	72	0.369
73	73	0.18
74	74	0.883
75	75	0.0371
76	76	0.216
77	77	0.588
78	78	0.46
79	79	0.0533
8	8	0.147
80	80	0.0196
81	81	0.87
82	82	0.292
83	83	0.238
84	84	0.00636
85	85	0.185
86	86	0.962
87	87	0.936
88	88	0.657
89	89	0.408
9	9	0.36
90	90	0.122
91	91	0.451
92	92	0.622
93	93	0.221
94	94	0.0573
95	95	0.0518
96	96	0.716
97	97	0.418
98	98	0.0987
99	99	0.7

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12842

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010189 human appendix - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0001154 (vermiform appendix)
0000160 (intestine)
0001153 (caecum)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009854 (digestive tract diverticulum)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010189 (human appendix - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0001045 (midgut)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005897
-|accession_numbers=CAGE;DRX008620;DRR009492;DRZ000917;DRZ002302
+|accession_numbers=CAGE;DRX008620;DRR009492;DRZ000917;DRZ002302;DRZ012267;DRZ013652
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0001154,UBERON:0000160,UBERON:0001153,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009854,UBERON:0010317,UBERON:0009856,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.31!201.41!POU2AF1;;chr19:50922187..50922204,+!p1@SPIB!2.24!173.23!SPIB;;chr16:85932760..85932775,+!p1@IRF8!2.13!135.10!IRF8;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!2.03!104.99!MEF2B;;chr6:391743..391759,+!p1@IRF4!1.91!79.57!IRF4;;chr11:47400078..47400106,-!p1@SPI1!1.80!61.61!SPI1;;chr20:50159198..50159299,-!p1@NFATC2!1.67!65.76!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.31!TCF21;;chr1:201979743..201979762,+!p1@ELF3!1.63!42.00!ELF3;;chr2:100759010..100759035,-!p1@AFF3!1.62!40.61!AFF3;;chr2:100759037..100759058,-!p2@AFF3!1.61!40.06!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.60!39.23!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.60!38.96!SP140;;chr5:149546334..149546364,+!p1@CDX1!1.59!37.85!CDX1;;chr16:86544113..86544145,+!p1@FOXF1!1.57!44.76!FOXF1;;chr20:50179368..50179392,-!p2@NFATC2!1.56!45.59!NFATC2;;chr20:62680984..62680999,-!p1@SOX18!1.55!45.59!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.54!33.98!EHF;;chr17:46682321..46682362,-!p1@HOXB6!1.53!32.88!HOXB6;;chr2:68592406..68592424,+!p1@PLEK!1.52!31.77!PLEK;;chr12:52445218..52445237,+!p1@NR4A1!1.51!375.19!NR4A1;;chr3:12330560..12330579,+!p1@PPARG!1.51!35.64!PPARG;;chr13:28543431..28543487,-!p1@CDX2!1.50!30.39!CDX2;;chr19:46801639..46801699,+!p1@HIF3A!1.50!30.39!HIF3A;;chr17:38020557..38020572,-!p4@IKZF3!1.50!30.39!IKZF3;;chr7:50348268..50348366,+!p4@IKZF1!1.49!30.11!IKZF1;;chr19:42636586..42636607,-!p1@POU2F2!1.48!78.74!POU2F2;;chr4:174451370..174451387,-!p1@HAND2!1.48!29.29!HAND2;;chr5:133451294..133451310,+!p2@TCF7!1.47!28.46!TCF7;;chr2:231090471..231090504,+!p2@SP140!1.47!28.18!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.46!63.27!BACH2;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.52!AKNA;;chr17:38020392..38020477,-!p1@IKZF3!1.40!24.31!IKZF3;;chr8:55370487..55370503,+!p1@SOX17!1.36!22.10!SOX17;;chr5:88120151..88120177,-!p6@MEF2C!1.36!21.83!MEF2C;;chr19:45971246..45971265,+!p1@FOSB!1.35!388.18!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.80!MEF2C;;chr9:37034186..37034216,-!p2@PAX5!1.35!21.27!PAX5;;chr7:27192185..27192209,-!p1@HOXA3!1.34!21.00!HOXA3;;chr7:50343634..50343717,+!p2@IKZF1!1.34!20.72!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.33!43.10!TOX;;chr11:113930425..113930471,+!p1@ZBTB16!1.30!27.08!ZBTB16;;chr1:25291475..25291511,-!p2@RUNX3!1.30!18.79!RUNX3;;chr16:79634624..79634642,-!p1@MAF!1.28!69.90!MAF;;chr6:91006575..91006602,-!p2@BACH2!1.28!26.80!BACH2;;chr20:42984330..42984364,+!p2@HNF4A!1.28!18.23!HNF4A;;chr4:111544219..111544240,-!p1@PITX2!1.28!17.96!PITX2;;chr18:77155922..77155939,+!p1@NFATC1!1.27!47.24!NFATC1;;chr17:37934204..37934241,-!p3@IKZF3!1.25!16.85!IKZF3;;chr12:52437488..52437507,+!p2@NR4A1!1.24!16.58!NR4A1;;chr6:106534192..106534224,+!p1@PRDM1!1.21!42.27!PRDM1;;chr1:40105299..40105326,-!p1@HEYL!1.19!14.64!HEYL;;chr7:50344289..50344323,+!p1@IKZF1!1.19!14.37!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.62!FOXP1;;chr4:111558135..111558198,-!p2@PITX2!1.18!14.09!PITX2;;chr17:37934365..37934387,-!p2@IKZF3!1.18!14.09!IKZF3;;chr8:76319876..76319926,+!p1@HNF4G!1.16!13.54!HNF4G;;chr16:79634595..79634620,-!p2@MAF!1.15!23.76!MAF;;chr4:149363494..149363543,-!p1@NR3C2!1.15!13.26!NR3C2;;chrX:49121165..49121179,-!p1@FOXP3!1.15!13.26!FOXP3;;chr9:37034469..37034474,-!p1@PAX5!1.15!13.26!PAX5;;chr2:145277882..145277967,-!p3@ZEB2!1.14!22.38!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.13!18.51!LYL1;;chr5:133450365..133450444,+!p1@TCF7!1.12!55.53!TCF7;;chr13:28543285..28543314,-!p2@CDX2!1.12!12.16!CDX2;;chr4:109087445..109087463,-!p1@LEF1!1.12!12.16!LEF1;;chr1:25256756..25256774,-!p1@RUNX3!1.11!22.38!RUNX3;;chr10:101292684..101292706,+!p1@NKX2-3!1.11!11.88!NKX2-3;;chr21:39870339..39870443,-!p1@ERG!1.10!11.60!ERG;;chr14:75745523..75745537,+!p1@FOS!1.09!1351.86!FOS;;chr1:201979703..201979721,+!p2@ELF3!1.09!11.33!ELF3;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.25!KLF5;;chr9:102584159..102584174,+!p2@NR4A3!1.08!19.89!NR4A3;;chr2:60778035..60778060,-!p4@BCL11A!1.08!13.26!BCL11A;;chr2:60781201..60781258,-!p3@BCL11A!1.08!11.05!BCL11A;;chr5:158526756..158526797,-!p3@EBF1!1.08!11.05!EBF1;;chr7:50344251..50344288,+!p3@IKZF1!1.08!11.05!IKZF1;;chr8:86099884..86099918,+!p4@E2F5!1.08!11.05!E2F5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.52!ELF1;;chr6:135502501..135502546,+!p1@MYB!1.07!12.99!MYB;;chr2:122042770..122042785,-!p1@TFCP2L1!1.07!10.78!TFCP2L1;;chr11:128392273..128392308,-!p2@ETS1!1.06!45.03!ETS1;;chr22:38380543..38380569,-!p1@SOX10!1.06!10.50!SOX10;;chr17:38020516..38020544,-!p5@IKZF3!1.06!10.50!IKZF3;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.72!DACH1;;chr3:63953435..63953499,+!p1@ATXN7!1.05!10.22!ATXN7;;chr7:50343895..50343936,+!p5@IKZF1!1.05!10.22!IKZF1;;chrY:21906761..21906810,-!p2@KDM5D!1.05!10.22!KDM5D;;chr5:134369879..134369898,-!p2@PITX1!1.04!9.95!PITX1;;chr11:34642656..34642667,+!p2@EHF!1.03!9.67!EHF;;chr3:18486354..18486377,-!p2@SATB1!1.01!11.60!SATB1;;chr5:153857778..153857794,-!p1@HAND1!1.01!9.12!HAND1;;chr3:169381420..169381535,-!p1@MECOM!1.00!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001046;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0001045,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10189-103D9
 |is_a=EFO:0002091;;FF:0010189
 |is_obsolete=
 |library_id=CNhs12842
-|library_id_phase_based=1:CNhs12842
+|library_id_phase_based=2:CNhs12842
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10189
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10189
 |name=appendix, adult
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12842,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10189-103D9;search_select_hide=table117:FF:10189-103D9
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FF:10189-103D9: Difference between revisions

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Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0