FF:10408-106B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005224 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007923;DRR008795;DRZ000220;DRZ001605;DRZ011570;DRZ012955 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:299 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0101120,FF:0100167,FF:0101911,FF:0100762,FF:0102877 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aPC-14.CNhs10726.10408-106B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aPC-14.CNhs10726.10408-106B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aPC-14.CNhs10726.10408-106B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aPC-14.CNhs10726.10408-106B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aPC-14.CNhs10726.10408-106B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10408-106B3 | |id=FF:10408-106B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102877 | ||
|is_obsolete= | |||
|library_id=CNhs10726 | |||
|library_id_phase_based=2:CNhs10726 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10408 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10408 | |||
|name=lung adenocarcinoma cell line:PC-14 | |name=lung adenocarcinoma cell line:PC-14 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10726,LSID691,release008,COMPLETED | |profile_hcage=CNhs10726,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.11583863179761,0,0,0,0,-0.160318030086386,0.231677263595219,0.0375678491577509,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.257950695041208,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0639218908611994,0,0,0,0,0,0,0,0,0.386820618727579,0,0,0,0,0,0,0.231677263595219,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231677263595219,0,0,0,0,0,0,0,0,0.103921357615866,0,0,0,0.173230436783393,-0.211197402695869,0,0,0,0,0.283915018346448,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290289387363753,0,0,0,-0.0485707522809905,-0.0868816749872555,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.283915018346448,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.0921358491678544,0.0881621210717467,0,0,-0.311440455111961,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,0.181264712005904,0,0,0,0,0,0.276507003669502,0,-0.0584194293519005,0.513634973490541,0,0,0,0,-0.0385634057391058,0,0.110797779801478,-0.0827201683234173,0.60045969157802,-0.329261857556813,-0.04680465889238,0,0,0,-0.488442543947862,0.436279782892699,0,0,0.069195333040203,-0.181349618560659,0,0,-0.391044581551635,0,-0.182962566810491,-0.133029418584644,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.166392078447429,0,0.231677263595219,0.231677263595219,0,0.600197602643705,0,0,0.784819466205187,0.223748698641537,-0.0173682558365182,0.16489850281037,0,-0.0707124634146946,-0.0294031690575919,0.447189613910873,-0.384692633610302,-0.147401849371139,0.0416955440453713,0.225817370495149,-0.161950409544578,0.0357986505668154,0.288090422229645,0.113867448438803,0.122953530247881,-0.167991626632473,0.750675689640838,0,0.231677263595219,0.231677263595219,-0.109613980489895,0,0.403703146614736,-0.490114714476774,0.358619575418935,0.338176030152668,0.583395130213467,-0.0477259019039351,0.101137627466713,0.593820790392742,-0.225759189301376,0,-0.230597140111623,0,0,0.0491986996589772,0.0642256538074821,0.62348881947118,-0.03384693861077,0,-0.483977461810981,-0.0683442610773682,0,-0.494330408777798,0.0741409839846547,0,0,-0.347099967276193,0,0,0,0,0,0.0517291950302852,0.0424870915377428,-0.232855561555545,0,0.100258354330297,0.097109881028478,-0.0505957427893875,0,0.0617514007356293,-0.146009897457394,-0.097063018513593,0.0654722642481831,0,-0.0378538096928028,0.0217476478591226,0.111925286171716,-0.422394805391737,0.173230436783393,-0.0749421270281965,0.0100288650569103,0.201921964080858,0.218064766016361,0.106588670732638,-0.0881268324752877,0,0.369685650245524,0.43383863506808,0,-0.108486514028344,0,0.0742814649640271,0,0.001375866314415,0,0.0958230891848287,-0.54043375147324,-0.207612110985468,0.11562092710389,0,-0.262610443524147,-0.788130937773974,0,0.0992485680042776,-0.0973496896005021,0.381950369584154,0.0813101802605793,0.208000107621173,-0.211650427864589,0.267838792402369,0,0.388790372175159,0,0,-0.058039470275074,-0.235476037764389,0,0.394205907714804,-0.0272236796454871,-0.372538777600076,0.115706190160285,0,0,0.51240528416903,0,0,0.507408702871574,-0.0198027254215894,1.20792583308185,-0.253326341486756,-0.0204287115470821,0.00721582234335401,0,0,-0.177527765965176,0,-0.317083526864289,0,0,-0.134042664801214,-0.116628112990133,0,0,0,-0.00429050576568729,0,-0.0589565109853561,0,0,0,0,0,0.0443404945921595,-0.123156066621229,0,0.104325490856963,0,0,0,0,0,0,0,0,-0.770259559138849,-0.00321930327886574,-0.12301741567642,0,0,0,0,-0.215723402553475,0.17871380748943,0,0.450116528070277,0,0,0,0,0.145536273806007,0,0,0,0,-0.057730457053664,-0.195318889083183,0,0,0,-0.27695440160179,0,0,0,0,0.323303527327489,0,0,-0.267281608105221,0,-0.259144939844555,0.150095384048377,0,0.00625809955196099,-0.311681327978863,0.990883484595065,0,0,0.23203354333651,0,0,-0.453965087065338,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.383638570110824,-0.0922240566585104,0.098219820170671,0,0,0,0,0,0,0.166869161713174,0.451876780718762,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0.231677263595219,0,0.231677263595219,-0.564807121153884,0,0,0.304617102374395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108358177559771,0.0375678491577509,0,0,0,0,0,0.231677263595219,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.126880878806062,0,-0.160318030086386,0,0,0,0,0,0.231677263595219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.042774648717226,0,0,0,0,0,0.0140619849301572,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0.231677263595219,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.317918255310107,-0.283220399823148,0.0393218928664431,0,0,0,-0.054385572482455,0,0,0,0.231677263595219,0.164899876176317,0,0,0,0,0,0,0,0,0.231677263595219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381950369584154,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.231677263595219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0185910339381749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.318826778920494,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.231677263595219,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.0639218908611994,0,0,0,0,0,0,0,0,0,0,0,0,0.170357084445092,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0.822071279680827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499341770373463,-0.0868816749872555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11583863179761,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=45.90775 | |rna_weight_ug=45.90775 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0446 | |sample_cell_catalog=RCB0446 | ||
|sample_cell_line=PC-14 | |sample_cell_line=PC-14 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.59354467106604e-230!GO:0005737;cytoplasm;8.25625799692094e-180!GO:0043226;organelle;6.62261281954206e-178!GO:0043229;intracellular organelle;2.3452714650508e-177!GO:0043231;intracellular membrane-bound organelle;2.6590996342774e-175!GO:0043227;membrane-bound organelle;3.41085971894959e-175!GO:0044422;organelle part;4.88235103967004e-138!GO:0044446;intracellular organelle part;1.77224878972893e-136!GO:0044444;cytoplasmic part;1.03352086997124e-117!GO:0032991;macromolecular complex;5.40917282902624e-89!GO:0044237;cellular metabolic process;6.66454524930428e-80!GO:0030529;ribonucleoprotein complex;5.77524643225723e-78!GO:0044238;primary metabolic process;1.76840787676066e-77!GO:0005634;nucleus;2.65826469267234e-71!GO:0043170;macromolecule metabolic process;2.65826469267234e-71!GO:0044428;nuclear part;6.80322361615016e-69!GO:0043233;organelle lumen;3.0696876271179e-68!GO:0031974;membrane-enclosed lumen;3.0696876271179e-68!GO:0003723;RNA binding;2.53278923462848e-67!GO:0005515;protein binding;7.8625136746978e-66!GO:0005739;mitochondrion;7.97404671951845e-59!GO:0006396;RNA processing;1.01399541433692e-46!GO:0031090;organelle membrane;1.24097055544761e-46!GO:0005840;ribosome;3.45149705830319e-46!GO:0016043;cellular component organization and biogenesis;9.65235879056281e-45!GO:0033036;macromolecule localization;1.42529470660713e-44!GO:0006412;translation;3.54084800024215e-44!GO:0043234;protein complex;4.31447798997073e-44!GO:0019538;protein metabolic process;5.35884754385013e-44!GO:0015031;protein transport;1.15417219295466e-42!GO:0031981;nuclear lumen;2.32760451795624e-41!GO:0044267;cellular protein metabolic process;1.21932619325972e-40!GO:0008104;protein localization;2.32390129231694e-40!GO:0044260;cellular macromolecule metabolic process;3.31087516733273e-40!GO:0045184;establishment of protein localization;3.32381745133841e-39!GO:0016071;mRNA metabolic process;3.39217501365758e-39!GO:0043283;biopolymer metabolic process;3.69950978598009e-39!GO:0003735;structural constituent of ribosome;4.15532940152638e-39!GO:0005829;cytosol;5.035910899097e-39!GO:0044429;mitochondrial part;5.98573401973257e-38!GO:0031967;organelle envelope;2.64902185134188e-36!GO:0043228;non-membrane-bound organelle;2.91036874137648e-36!GO:0043232;intracellular non-membrane-bound organelle;2.91036874137648e-36!GO:0031975;envelope;5.74477884129166e-36!GO:0008380;RNA splicing;7.16461661108323e-36!GO:0010467;gene expression;7.95158416235039e-35!GO:0009058;biosynthetic process;1.12033223775031e-34!GO:0033279;ribosomal subunit;2.38438352681197e-34!GO:0044249;cellular biosynthetic process;2.53830600378008e-34!GO:0009059;macromolecule biosynthetic process;3.90044421392254e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.43740730193847e-34!GO:0006996;organelle organization and biogenesis;1.7004754518587e-33!GO:0006397;mRNA processing;1.16949410426911e-32!GO:0046907;intracellular transport;2.32112117684374e-30!GO:0006259;DNA metabolic process;7.68652462245708e-30!GO:0006886;intracellular protein transport;4.85899445410141e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.08186991194099e-27!GO:0065003;macromolecular complex assembly;2.14480296152214e-27!GO:0005681;spliceosome;1.90530319408182e-25!GO:0005654;nucleoplasm;8.98214604160821e-25!GO:0000166;nucleotide binding;1.09019359260561e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.19029158965574e-24!GO:0005740;mitochondrial envelope;2.30153206868013e-23!GO:0022607;cellular component assembly;2.53709541763534e-23!GO:0019866;organelle inner membrane;5.64309714175066e-23!GO:0007049;cell cycle;6.47698555200346e-22!GO:0031966;mitochondrial membrane;1.46734210434294e-21!GO:0012505;endomembrane system;1.74884773256366e-21!GO:0016462;pyrophosphatase activity;2.01429197813565e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.99271958356174e-21!GO:0005743;mitochondrial inner membrane;3.577182434768e-21!GO:0017111;nucleoside-triphosphatase activity;3.85642354959803e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.91229914927415e-21!GO:0044445;cytosolic part;7.26791183516585e-21!GO:0044451;nucleoplasm part;7.0411853891207e-20!GO:0051649;establishment of cellular localization;1.9464696660398e-19!GO:0051641;cellular localization;3.54384718335636e-19!GO:0006119;oxidative phosphorylation;4.90165173163455e-19!GO:0005730;nucleolus;1.05563314268896e-18!GO:0003676;nucleic acid binding;1.05563314268896e-18!GO:0022618;protein-RNA complex assembly;4.65905237188676e-18!GO:0015935;small ribosomal subunit;6.6435072641204e-18!GO:0031980;mitochondrial lumen;9.18984539196352e-18!GO:0005759;mitochondrial matrix;9.18984539196352e-18!GO:0044265;cellular macromolecule catabolic process;1.55881267706623e-17!GO:0015934;large ribosomal subunit;1.66898541631497e-17!GO:0006457;protein folding;6.35031438620309e-17!GO:0032553;ribonucleotide binding;7.96687139105214e-17!GO:0032555;purine ribonucleotide binding;7.96687139105214e-17!GO:0017076;purine nucleotide binding;1.43852741139516e-16!GO:0044455;mitochondrial membrane part;2.37900895185105e-16!GO:0005783;endoplasmic reticulum;4.24667344230434e-16!GO:0016874;ligase activity;5.18464864823948e-16!GO:0051276;chromosome organization and biogenesis;8.59538033262853e-16!GO:0051186;cofactor metabolic process;1.54892101448172e-15!GO:0022402;cell cycle process;2.59435430186092e-15!GO:0005524;ATP binding;2.98758756406277e-15!GO:0006605;protein targeting;3.03571648963881e-15!GO:0008134;transcription factor binding;3.14707111702402e-15!GO:0032559;adenyl ribonucleotide binding;3.52939559941961e-15!GO:0016070;RNA metabolic process;4.98423926473064e-15!GO:0043285;biopolymer catabolic process;7.02939922300438e-15!GO:0005694;chromosome;8.75529417903679e-15!GO:0030554;adenyl nucleotide binding;8.80035855832007e-15!GO:0044432;endoplasmic reticulum part;8.96527739880658e-15!GO:0005794;Golgi apparatus;1.05602867939454e-14!GO:0000278;mitotic cell cycle;1.30344532258317e-14!GO:0044248;cellular catabolic process;1.39834471752036e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.46383521684694e-14!GO:0006974;response to DNA damage stimulus;1.57782654092639e-14!GO:0008135;translation factor activity, nucleic acid binding;1.79690602491252e-14!GO:0009057;macromolecule catabolic process;1.92397838846824e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.09468144673258e-14!GO:0016887;ATPase activity;2.14903264822759e-14!GO:0005746;mitochondrial respiratory chain;2.75922528528534e-14!GO:0019941;modification-dependent protein catabolic process;2.75922528528534e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.75922528528534e-14!GO:0044257;cellular protein catabolic process;3.83551451403917e-14!GO:0006512;ubiquitin cycle;4.61229850074778e-14!GO:0042623;ATPase activity, coupled;5.33023770766111e-14!GO:0000502;proteasome complex (sensu Eukaryota);7.46081360723342e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;8.02774154534168e-14!GO:0005635;nuclear envelope;1.25815277231435e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.72493151693684e-13!GO:0016604;nuclear body;1.89469641920324e-13!GO:0005761;mitochondrial ribosome;2.38529865807057e-13!GO:0000313;organellar ribosome;2.38529865807057e-13!GO:0006732;coenzyme metabolic process;2.45320721362138e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.96496436198731e-13!GO:0000375;RNA splicing, via transesterification reactions;2.96496436198731e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.96496436198731e-13!GO:0006323;DNA packaging;3.28909311296407e-13!GO:0048770;pigment granule;3.30107266145841e-13!GO:0042470;melanosome;3.30107266145841e-13!GO:0044427;chromosomal part;4.29951556423842e-13!GO:0043412;biopolymer modification;5.16209870928915e-13!GO:0050136;NADH dehydrogenase (quinone) activity;8.49432269708528e-13!GO:0003954;NADH dehydrogenase activity;8.49432269708528e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.49432269708528e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.02734865291874e-12!GO:0031965;nuclear membrane;1.21364456580493e-12!GO:0006281;DNA repair;2.8878704858628e-12!GO:0048193;Golgi vesicle transport;3.45620832159711e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.71415563666632e-12!GO:0022403;cell cycle phase;9.87050709907786e-12!GO:0030163;protein catabolic process;1.43112653861929e-11!GO:0000087;M phase of mitotic cell cycle;1.54777173533639e-11!GO:0007067;mitosis;1.58110345865173e-11!GO:0051082;unfolded protein binding;1.72148516507896e-11!GO:0051301;cell division;1.98189043390392e-11!GO:0016192;vesicle-mediated transport;1.98860736360953e-11!GO:0006446;regulation of translational initiation;1.98860736360953e-11!GO:0006913;nucleocytoplasmic transport;2.19679885100557e-11!GO:0006464;protein modification process;3.90614401903536e-11!GO:0009719;response to endogenous stimulus;4.858576234297e-11!GO:0016607;nuclear speck;4.89084665855641e-11!GO:0051169;nuclear transport;5.375900370427e-11!GO:0006413;translational initiation;6.05201053898625e-11!GO:0004386;helicase activity;6.77062272855467e-11!GO:0042775;organelle ATP synthesis coupled electron transport;7.39321922775493e-11!GO:0042773;ATP synthesis coupled electron transport;7.39321922775493e-11!GO:0044453;nuclear membrane part;8.53748518327341e-11!GO:0030964;NADH dehydrogenase complex (quinone);8.74029431199329e-11!GO:0045271;respiratory chain complex I;8.74029431199329e-11!GO:0005747;mitochondrial respiratory chain complex I;8.74029431199329e-11!GO:0042254;ribosome biogenesis and assembly;1.31240363189502e-10!GO:0003743;translation initiation factor activity;1.34111039951597e-10!GO:0012501;programmed cell death;1.44482457665388e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.7267569787688e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.89807101189386e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.04541925670982e-10!GO:0006915;apoptosis;2.37991494288165e-10!GO:0005789;endoplasmic reticulum membrane;2.94144174674024e-10!GO:0000279;M phase;6.02445048749836e-10!GO:0008026;ATP-dependent helicase activity;6.16112081863429e-10!GO:0006260;DNA replication;9.46570248895802e-10!GO:0016568;chromatin modification;1.13851158089143e-09!GO:0000785;chromatin;1.45409028467823e-09!GO:0008219;cell death;1.88528635609899e-09!GO:0016265;death;1.88528635609899e-09!GO:0005793;ER-Golgi intermediate compartment;2.1835492813891e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.19092500443152e-09!GO:0005643;nuclear pore;2.73209585090371e-09!GO:0003712;transcription cofactor activity;4.22449259794151e-09!GO:0009060;aerobic respiration;4.3790088690629e-09!GO:0006403;RNA localization;5.70097353833219e-09!GO:0050657;nucleic acid transport;6.42203047797951e-09!GO:0051236;establishment of RNA localization;6.42203047797951e-09!GO:0050658;RNA transport;6.42203047797951e-09!GO:0006366;transcription from RNA polymerase II promoter;6.42203047797951e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.98886247886313e-09!GO:0008639;small protein conjugating enzyme activity;1.80000097930645e-08!GO:0043687;post-translational protein modification;1.80943184312442e-08!GO:0006399;tRNA metabolic process;1.83596075251488e-08!GO:0016787;hydrolase activity;1.98937968861927e-08!GO:0009056;catabolic process;2.02510513984336e-08!GO:0017038;protein import;2.02510513984336e-08!GO:0051188;cofactor biosynthetic process;2.157048537753e-08!GO:0006333;chromatin assembly or disassembly;2.23084642368652e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.93451740946451e-08!GO:0009055;electron carrier activity;3.63484160134052e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.77636320555729e-08!GO:0004842;ubiquitin-protein ligase activity;5.30334388495224e-08!GO:0009259;ribonucleotide metabolic process;5.8572157679128e-08!GO:0046930;pore complex;1.12400578560567e-07!GO:0006461;protein complex assembly;1.24577352047771e-07!GO:0006163;purine nucleotide metabolic process;1.27835452999266e-07!GO:0015986;ATP synthesis coupled proton transport;1.35890754953889e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.35890754953889e-07!GO:0019787;small conjugating protein ligase activity;1.36026465655833e-07!GO:0006164;purine nucleotide biosynthetic process;1.45621959097612e-07!GO:0016881;acid-amino acid ligase activity;1.45802018174401e-07!GO:0009260;ribonucleotide biosynthetic process;1.46414528067238e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.84662867810596e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.84662867810596e-07!GO:0044431;Golgi apparatus part;1.86734601701689e-07!GO:0043566;structure-specific DNA binding;2.47595245070773e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.60414029776914e-07!GO:0019829;cation-transporting ATPase activity;2.79000625352345e-07!GO:0016072;rRNA metabolic process;2.96385593398939e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.97661350838984e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.97661350838984e-07!GO:0009150;purine ribonucleotide metabolic process;3.12091513431617e-07!GO:0051028;mRNA transport;3.17159089561617e-07!GO:0045333;cellular respiration;3.27488857225585e-07!GO:0006099;tricarboxylic acid cycle;3.4068246313994e-07!GO:0046356;acetyl-CoA catabolic process;3.4068246313994e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.43740804589645e-07!GO:0008565;protein transporter activity;3.51389415370457e-07!GO:0051726;regulation of cell cycle;3.65420252965536e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.7808878654961e-07!GO:0032446;protein modification by small protein conjugation;3.7808878654961e-07!GO:0009108;coenzyme biosynthetic process;4.01736074621494e-07!GO:0006364;rRNA processing;4.09679477191702e-07!GO:0000245;spliceosome assembly;4.24610062291416e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.32649315862477e-07!GO:0015630;microtubule cytoskeleton;4.47922600724737e-07!GO:0005768;endosome;4.52175043347769e-07!GO:0000074;regulation of progression through cell cycle;5.10310352453757e-07!GO:0050794;regulation of cellular process;5.40541738831271e-07!GO:0016567;protein ubiquitination;5.73718128927715e-07!GO:0009141;nucleoside triphosphate metabolic process;6.04384089753307e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.82436383962181e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.82436383962181e-07!GO:0016740;transferase activity;7.31157080196715e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.35034063609957e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.00536153207028e-06!GO:0065002;intracellular protein transport across a membrane;1.1427693080846e-06!GO:0006754;ATP biosynthetic process;1.19618369852302e-06!GO:0006753;nucleoside phosphate metabolic process;1.19618369852302e-06!GO:0006084;acetyl-CoA metabolic process;1.33237396129353e-06!GO:0005788;endoplasmic reticulum lumen;1.40032654654938e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.5320244162053e-06!GO:0003724;RNA helicase activity;2.49861496422403e-06!GO:0016779;nucleotidyltransferase activity;2.6776753015204e-06!GO:0016491;oxidoreductase activity;2.77723682743122e-06!GO:0051246;regulation of protein metabolic process;2.89203222451816e-06!GO:0009109;coenzyme catabolic process;2.92397984048633e-06!GO:0043067;regulation of programmed cell death;3.08743930348597e-06!GO:0065004;protein-DNA complex assembly;3.27629232853557e-06!GO:0000151;ubiquitin ligase complex;3.31877581182258e-06!GO:0042981;regulation of apoptosis;3.34732037020797e-06!GO:0046034;ATP metabolic process;3.79391673129544e-06!GO:0051170;nuclear import;3.80362676936048e-06!GO:0043623;cellular protein complex assembly;3.8249693635182e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.83486412815319e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.83486412815319e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.83486412815319e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.94297358356993e-06!GO:0003697;single-stranded DNA binding;4.00519512852696e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.25357633864869e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.78107855127626e-06!GO:0019899;enzyme binding;5.04098854707292e-06!GO:0051187;cofactor catabolic process;5.37022627834035e-06!GO:0007005;mitochondrion organization and biogenesis;5.54729800360032e-06!GO:0043038;amino acid activation;5.58094841640403e-06!GO:0006418;tRNA aminoacylation for protein translation;5.58094841640403e-06!GO:0043039;tRNA aminoacylation;5.58094841640403e-06!GO:0006606;protein import into nucleus;6.48384465985091e-06!GO:0030120;vesicle coat;6.67395610539048e-06!GO:0030662;coated vesicle membrane;6.67395610539048e-06!GO:0005819;spindle;7.47990318042957e-06!GO:0000139;Golgi membrane;7.61819923519821e-06!GO:0016853;isomerase activity;7.81980231261006e-06!GO:0006402;mRNA catabolic process;7.870643715518e-06!GO:0003682;chromatin binding;8.20589176426804e-06!GO:0009117;nucleotide metabolic process;8.56775969705663e-06!GO:0045259;proton-transporting ATP synthase complex;9.69788233347251e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.16252006862721e-05!GO:0048475;coated membrane;1.50973439488965e-05!GO:0030117;membrane coat;1.50973439488965e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.55981683631219e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.68242341526215e-05!GO:0016563;transcription activator activity;1.71167937523892e-05!GO:0006793;phosphorus metabolic process;1.71167937523892e-05!GO:0006796;phosphate metabolic process;1.71167937523892e-05!GO:0007051;spindle organization and biogenesis;2.16805621663946e-05!GO:0003924;GTPase activity;2.67022352399676e-05!GO:0005773;vacuole;2.80285758455471e-05!GO:0005813;centrosome;2.90757617738657e-05!GO:0016859;cis-trans isomerase activity;3.08357415759831e-05!GO:0003713;transcription coactivator activity;3.60987234990954e-05!GO:0007264;small GTPase mediated signal transduction;3.62301292242997e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.12193803274954e-05!GO:0005667;transcription factor complex;4.33182401795252e-05!GO:0000314;organellar small ribosomal subunit;4.36146622443526e-05!GO:0005763;mitochondrial small ribosomal subunit;4.36146622443526e-05!GO:0005815;microtubule organizing center;4.56086794394336e-05!GO:0004298;threonine endopeptidase activity;5.29078540311043e-05!GO:0006401;RNA catabolic process;5.40292289335558e-05!GO:0006613;cotranslational protein targeting to membrane;5.75212917036315e-05!GO:0043021;ribonucleoprotein binding;6.06026362145034e-05!GO:0042802;identical protein binding;6.10837726335389e-05!GO:0048523;negative regulation of cellular process;6.1960373083059e-05!GO:0016310;phosphorylation;6.53262842385698e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.53262842385698e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.76000299619594e-05!GO:0006091;generation of precursor metabolites and energy;6.8433694500503e-05!GO:0005762;mitochondrial large ribosomal subunit;6.9669378776077e-05!GO:0000315;organellar large ribosomal subunit;6.9669378776077e-05!GO:0031324;negative regulation of cellular metabolic process;7.04252585536475e-05!GO:0044440;endosomal part;7.3870112985317e-05!GO:0010008;endosome membrane;7.3870112985317e-05!GO:0008186;RNA-dependent ATPase activity;7.65606132599452e-05!GO:0006334;nucleosome assembly;7.75454356446092e-05!GO:0043069;negative regulation of programmed cell death;8.47312219780884e-05!GO:0016564;transcription repressor activity;9.07064525620746e-05!GO:0000323;lytic vacuole;9.14575264068513e-05!GO:0005764;lysosome;9.14575264068513e-05!GO:0006752;group transfer coenzyme metabolic process;9.33520527766361e-05!GO:0003690;double-stranded DNA binding;9.739462554386e-05!GO:0005770;late endosome;9.80971534169162e-05!GO:0031497;chromatin assembly;0.000105339372792639!GO:0003729;mRNA binding;0.000110109587658079!GO:0051168;nuclear export;0.000114658812861833!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00011728654562957!GO:0005657;replication fork;0.000126168137727623!GO:0005798;Golgi-associated vesicle;0.000133669456628996!GO:0007010;cytoskeleton organization and biogenesis;0.000134961203316174!GO:0051252;regulation of RNA metabolic process;0.000142552388268052!GO:0043066;negative regulation of apoptosis;0.000173192017419708!GO:0006916;anti-apoptosis;0.000174170312547784!GO:0006261;DNA-dependent DNA replication;0.00018609118674281!GO:0031252;leading edge;0.000207220151712792!GO:0030036;actin cytoskeleton organization and biogenesis;0.000214705529716422!GO:0048471;perinuclear region of cytoplasm;0.000215114728900446!GO:0051427;hormone receptor binding;0.000217808796705997!GO:0004004;ATP-dependent RNA helicase activity;0.000243909427241729!GO:0003899;DNA-directed RNA polymerase activity;0.000247490135439813!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000260213076367847!GO:0045454;cell redox homeostasis;0.000289005581884189!GO:0000775;chromosome, pericentric region;0.000302568400118383!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000310885080691618!GO:0048519;negative regulation of biological process;0.000322039736188401!GO:0009892;negative regulation of metabolic process;0.000337586472769992!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000390351120409859!GO:0015399;primary active transmembrane transporter activity;0.000390351120409859!GO:0005048;signal sequence binding;0.000414759560390184!GO:0035257;nuclear hormone receptor binding;0.000434014953707213!GO:0033116;ER-Golgi intermediate compartment membrane;0.000489541485709425!GO:0031988;membrane-bound vesicle;0.00050634119809204!GO:0015980;energy derivation by oxidation of organic compounds;0.000519452991260329!GO:0043492;ATPase activity, coupled to movement of substances;0.000614740497565654!GO:0006612;protein targeting to membrane;0.000622851619113792!GO:0016044;membrane organization and biogenesis;0.000638766759077055!GO:0051329;interphase of mitotic cell cycle;0.000646276610358997!GO:0016023;cytoplasmic membrane-bound vesicle;0.000646276610358997!GO:0050789;regulation of biological process;0.000669331367678244!GO:0005525;GTP binding;0.000754572878067437!GO:0007243;protein kinase cascade;0.00079189798303362!GO:0008250;oligosaccharyl transferase complex;0.000818764610032346!GO:0003714;transcription corepressor activity;0.000818764610032346!GO:0016363;nuclear matrix;0.000865409569038112!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000899226839498396!GO:0008234;cysteine-type peptidase activity;0.00090538449762746!GO:0008094;DNA-dependent ATPase activity;0.000906434727231058!GO:0008654;phospholipid biosynthetic process;0.000909446120744288!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000957736166528958!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00101399669626953!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00102042675673181!GO:0000075;cell cycle checkpoint;0.00102376348122971!GO:0005769;early endosome;0.00102376348122971!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0010662621505525!GO:0045786;negative regulation of progression through cell cycle;0.00112926368424248!GO:0006414;translational elongation;0.00117456466468768!GO:0005885;Arp2/3 protein complex;0.00119333737407462!GO:0048522;positive regulation of cellular process;0.00120017520733702!GO:0051325;interphase;0.00121171856666686!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0012794512138805!GO:0030867;rough endoplasmic reticulum membrane;0.00133413120785792!GO:0016481;negative regulation of transcription;0.00134327131106052!GO:0030029;actin filament-based process;0.00135742479982375!GO:0022890;inorganic cation transmembrane transporter activity;0.00141250902786984!GO:0031072;heat shock protein binding;0.00143065354697859!GO:0051920;peroxiredoxin activity;0.00146075026939513!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00147598382999537!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00155481261679768!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00156289430459065!GO:0043488;regulation of mRNA stability;0.00158085117029633!GO:0043487;regulation of RNA stability;0.00158085117029633!GO:0004674;protein serine/threonine kinase activity;0.0016031893756959!GO:0009165;nucleotide biosynthetic process;0.00169776857208208!GO:0006769;nicotinamide metabolic process;0.00170437794251837!GO:0008033;tRNA processing;0.00176291771393148!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00186359662365212!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00193255856109802!GO:0015992;proton transport;0.00193255856109802!GO:0004576;oligosaccharyl transferase activity;0.00194157525733151!GO:0003684;damaged DNA binding;0.00211204076651474!GO:0007265;Ras protein signal transduction;0.00220781296853442!GO:0005083;small GTPase regulator activity;0.00224662372265939!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00229490049346382!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00229490049346382!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00229490049346382!GO:0006818;hydrogen transport;0.00237577346593464!GO:0050662;coenzyme binding;0.00239995680512444!GO:0006302;double-strand break repair;0.0025204276375933!GO:0008139;nuclear localization sequence binding;0.00256891220328158!GO:0065009;regulation of a molecular function;0.00263350184814923!GO:0007052;mitotic spindle organization and biogenesis;0.00264328312940821!GO:0006607;NLS-bearing substrate import into nucleus;0.00274946507358449!GO:0044452;nucleolar part;0.00312351593274645!GO:0006082;organic acid metabolic process;0.00328007887857849!GO:0031982;vesicle;0.00330934533650171!GO:0019752;carboxylic acid metabolic process;0.00337128424055344!GO:0030118;clathrin coat;0.00345568872467156!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00350509536788971!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00350922727812904!GO:0005684;U2-dependent spliceosome;0.00363646350556784!GO:0006284;base-excision repair;0.00369557539835017!GO:0051789;response to protein stimulus;0.0037086099127251!GO:0006986;response to unfolded protein;0.0037086099127251!GO:0019362;pyridine nucleotide metabolic process;0.00379220719870179!GO:0019222;regulation of metabolic process;0.00385819233858307!GO:0005791;rough endoplasmic reticulum;0.00392821594461035!GO:0048500;signal recognition particle;0.00395052984047065!GO:0006338;chromatin remodeling;0.00406224056019979!GO:0030133;transport vesicle;0.00409575084498167!GO:0016584;nucleosome positioning;0.00416591675687567!GO:0003746;translation elongation factor activity;0.00423701178690519!GO:0006767;water-soluble vitamin metabolic process;0.00424282817728109!GO:0001558;regulation of cell growth;0.00440617503172111!GO:0045893;positive regulation of transcription, DNA-dependent;0.0044674110325325!GO:0000776;kinetochore;0.00450306374898537!GO:0006749;glutathione metabolic process;0.00460767211442647!GO:0031410;cytoplasmic vesicle;0.00467302290028458!GO:0043284;biopolymer biosynthetic process;0.00471008198841723!GO:0006733;oxidoreduction coenzyme metabolic process;0.00474791702759695!GO:0030176;integral to endoplasmic reticulum membrane;0.00484057498050993!GO:0006611;protein export from nucleus;0.00494445136379623!GO:0008092;cytoskeletal protein binding;0.00494445136379623!GO:0043681;protein import into mitochondrion;0.00494445136379623!GO:0032561;guanyl ribonucleotide binding;0.00495081355334699!GO:0019001;guanyl nucleotide binding;0.00495081355334699!GO:0006891;intra-Golgi vesicle-mediated transport;0.00495081355334699!GO:0048487;beta-tubulin binding;0.00503279858614225!GO:0030132;clathrin coat of coated pit;0.00514595880702277!GO:0006383;transcription from RNA polymerase III promoter;0.00526568913508034!GO:0048037;cofactor binding;0.0053744585376876!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00545164480160475!GO:0005905;coated pit;0.0055295495465105!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00553551910548277!GO:0030658;transport vesicle membrane;0.00564701975991496!GO:0006740;NADPH regeneration;0.00568847265393854!GO:0006098;pentose-phosphate shunt;0.00568847265393854!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00571609274998193!GO:0015002;heme-copper terminal oxidase activity;0.00571609274998193!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00571609274998193!GO:0004129;cytochrome-c oxidase activity;0.00571609274998193!GO:0032508;DNA duplex unwinding;0.00576476710436838!GO:0032392;DNA geometric change;0.00576476710436838!GO:0003678;DNA helicase activity;0.00588456107311431!GO:0051287;NAD binding;0.00588456107311431!GO:0031625;ubiquitin protein ligase binding;0.00614559609035767!GO:0042026;protein refolding;0.00617867180151421!GO:0004197;cysteine-type endopeptidase activity;0.00630015547298468!GO:0018196;peptidyl-asparagine modification;0.00635446119488774!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00635446119488774!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00646722006120514!GO:0008312;7S RNA binding;0.00654874245377437!GO:0035258;steroid hormone receptor binding;0.00671941633384032!GO:0045941;positive regulation of transcription;0.00671941633384032!GO:0030119;AP-type membrane coat adaptor complex;0.00720395474722432!GO:0003711;transcription elongation regulator activity;0.00739733290079564!GO:0006672;ceramide metabolic process;0.00742449192189214!GO:0008022;protein C-terminus binding;0.00751295096955412!GO:0019867;outer membrane;0.00775517672863089!GO:0007059;chromosome segregation;0.00780524964306636!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00792271001991476!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00792271001991476!GO:0030131;clathrin adaptor complex;0.00820254279889367!GO:0006839;mitochondrial transport;0.00823676821113796!GO:0000059;protein import into nucleus, docking;0.00862586236920546!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00862586236920546!GO:0009116;nucleoside metabolic process;0.00863567450998731!GO:0031968;organelle outer membrane;0.00910954574231821!GO:0006417;regulation of translation;0.00910954574231821!GO:0019843;rRNA binding;0.00934545377361315!GO:0008629;induction of apoptosis by intracellular signals;0.00948649195610331!GO:0007088;regulation of mitosis;0.00950253218808!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00950253218808!GO:0045047;protein targeting to ER;0.00950253218808!GO:0000786;nucleosome;0.0096931949034509!GO:0005637;nuclear inner membrane;0.00976296948220586!GO:0005874;microtubule;0.0100644261182606!GO:0009081;branched chain family amino acid metabolic process;0.0102972359254706!GO:0006405;RNA export from nucleus;0.0102972359254706!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0102972359254706!GO:0008610;lipid biosynthetic process;0.0104847984111567!GO:0046983;protein dimerization activity;0.010534983739896!GO:0008361;regulation of cell size;0.0108184248605322!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0109303565117557!GO:0006376;mRNA splice site selection;0.0118006954997863!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0118006954997863!GO:0016049;cell growth;0.0118046933762626!GO:0006268;DNA unwinding during replication;0.012288915537748!GO:0005741;mitochondrial outer membrane;0.0123988116792739!GO:0000792;heterochromatin;0.0125839154736785!GO:0030134;ER to Golgi transport vesicle;0.0129338437877036!GO:0043022;ribosome binding;0.0132779286123052!GO:0030660;Golgi-associated vesicle membrane;0.0133140697929927!GO:0006626;protein targeting to mitochondrion;0.0142129539373926!GO:0044262;cellular carbohydrate metabolic process;0.014527926804111!GO:0030031;cell projection biogenesis;0.0154267469352074!GO:0016272;prefoldin complex;0.0154354495882241!GO:0007017;microtubule-based process;0.0154946301602475!GO:0031124;mRNA 3'-end processing;0.0154946301602475!GO:0047485;protein N-terminus binding;0.0159098149581132!GO:0006739;NADP metabolic process;0.0162733243620115!GO:0007006;mitochondrial membrane organization and biogenesis;0.0164924334647482!GO:0046467;membrane lipid biosynthetic process;0.0165271552785944!GO:0031461;cullin-RING ubiquitin ligase complex;0.0166412152028471!GO:0015631;tubulin binding;0.0173624184661032!GO:0046519;sphingoid metabolic process;0.017596029729034!GO:0001726;ruffle;0.0179642759566952!GO:0009112;nucleobase metabolic process;0.0181597826583097!GO:0016741;transferase activity, transferring one-carbon groups;0.0182515807336!GO:0051052;regulation of DNA metabolic process;0.018252549058374!GO:0046483;heterocycle metabolic process;0.0184734933440143!GO:0006354;RNA elongation;0.0188976625227849!GO:0046474;glycerophospholipid biosynthetic process;0.0188976625227849!GO:0030027;lamellipodium;0.0190353570939383!GO:0007093;mitotic cell cycle checkpoint;0.0190357465650184!GO:0006081;aldehyde metabolic process;0.0193562888223622!GO:0030125;clathrin vesicle coat;0.0193880681737962!GO:0030665;clathrin coated vesicle membrane;0.0193880681737962!GO:0043189;H4/H2A histone acetyltransferase complex;0.0195209921007582!GO:0006289;nucleotide-excision repair;0.0204258818549375!GO:0043596;nuclear replication fork;0.0209296066186512!GO:0006310;DNA recombination;0.0209818831780171!GO:0008168;methyltransferase activity;0.0210121947868525!GO:0016197;endosome transport;0.0210178245746562!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0210789542178117!GO:0031529;ruffle organization and biogenesis;0.0212703400507112!GO:0006979;response to oxidative stress;0.0216594441346307!GO:0000209;protein polyubiquitination;0.0217541650573202!GO:0051087;chaperone binding;0.0218651106930087!GO:0003702;RNA polymerase II transcription factor activity;0.022196630111281!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0222758258613794!GO:0010257;NADH dehydrogenase complex assembly;0.0222758258613794!GO:0033108;mitochondrial respiratory chain complex assembly;0.0222758258613794!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0224058692003391!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0225943563164431!GO:0030880;RNA polymerase complex;0.0227371860534982!GO:0031326;regulation of cellular biosynthetic process;0.0228072752263344!GO:0051101;regulation of DNA binding;0.0229597708509204!GO:0042393;histone binding;0.0237616428444174!GO:0046489;phosphoinositide biosynthetic process;0.0237798875295504!GO:0000339;RNA cap binding;0.0241913093653183!GO:0005832;chaperonin-containing T-complex;0.0241913093653183!GO:0050790;regulation of catalytic activity;0.0251437700763891!GO:0032318;regulation of Ras GTPase activity;0.0251437700763891!GO:0005876;spindle microtubule;0.0252992634836801!GO:0045045;secretory pathway;0.0258397012433627!GO:0035267;NuA4 histone acetyltransferase complex;0.0259743697519282!GO:0030663;COPI coated vesicle membrane;0.0261008774151263!GO:0030126;COPI vesicle coat;0.0261008774151263!GO:0006118;electron transport;0.0262486508009629!GO:0000123;histone acetyltransferase complex;0.0270177084760508!GO:0043065;positive regulation of apoptosis;0.0271466788612828!GO:0043414;biopolymer methylation;0.027287649015664!GO:0030911;TPR domain binding;0.0286273127101234!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0288245720556444!GO:0000096;sulfur amino acid metabolic process;0.0289876224505601!GO:0030137;COPI-coated vesicle;0.0289876224505601!GO:0030127;COPII vesicle coat;0.029279203874925!GO:0012507;ER to Golgi transport vesicle membrane;0.029279203874925!GO:0016791;phosphoric monoester hydrolase activity;0.0295974597103487!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0298883731607439!GO:0016126;sterol biosynthetic process;0.0299623242144799!GO:0043624;cellular protein complex disassembly;0.0299971515967395!GO:0044438;microbody part;0.0300666000290114!GO:0044439;peroxisomal part;0.0300666000290114!GO:0009967;positive regulation of signal transduction;0.0300666000290114!GO:0040008;regulation of growth;0.0307992748181839!GO:0008601;protein phosphatase type 2A regulator activity;0.0313299060722572!GO:0043068;positive regulation of programmed cell death;0.0321083687096437!GO:0009083;branched chain family amino acid catabolic process;0.0321538020571799!GO:0042585;germinal vesicle;0.0322045137748407!GO:0030659;cytoplasmic vesicle membrane;0.0322117818357174!GO:0043130;ubiquitin binding;0.0323105337281459!GO:0032182;small conjugating protein binding;0.0323105337281459!GO:0000082;G1/S transition of mitotic cell cycle;0.0327057578842971!GO:0007266;Rho protein signal transduction;0.0327327307942423!GO:0043087;regulation of GTPase activity;0.0327492643179714!GO:0006007;glucose catabolic process;0.0331083998988137!GO:0051059;NF-kappaB binding;0.034020428301481!GO:0048518;positive regulation of biological process;0.0344074192138213!GO:0006352;transcription initiation;0.0346494371083867!GO:0042364;water-soluble vitamin biosynthetic process;0.0354001089943215!GO:0006650;glycerophospholipid metabolic process;0.0355219162177004!GO:0031123;RNA 3'-end processing;0.0357269690274304!GO:0006897;endocytosis;0.0359961899655803!GO:0010324;membrane invagination;0.0359961899655803!GO:0007040;lysosome organization and biogenesis;0.0361394478349292!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0362958403956324!GO:0008180;signalosome;0.0363039951548615!GO:0047017;prostaglandin-F synthase activity;0.0367335897052429!GO:0045892;negative regulation of transcription, DNA-dependent;0.0367335897052429!GO:0004003;ATP-dependent DNA helicase activity;0.0370005236808722!GO:0004527;exonuclease activity;0.0370005236808722!GO:0006695;cholesterol biosynthetic process;0.0372923081132824!GO:0065007;biological regulation;0.0379883298660035!GO:0046578;regulation of Ras protein signal transduction;0.0382296705790797!GO:0016251;general RNA polymerase II transcription factor activity;0.0386365667007437!GO:0016301;kinase activity;0.0387043063288898!GO:0007242;intracellular signaling cascade;0.039056200061356!GO:0006458;'de novo' protein folding;0.039056200061356!GO:0051084;'de novo' posttranslational protein folding;0.039056200061356!GO:0030384;phosphoinositide metabolic process;0.0391818241081198!GO:0030521;androgen receptor signaling pathway;0.0391916979680965!GO:0006892;post-Golgi vesicle-mediated transport;0.0395441491909534!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0399098203729435!GO:0009889;regulation of biosynthetic process;0.0402250688916186!GO:0031323;regulation of cellular metabolic process;0.0404723931801176!GO:0031371;ubiquitin conjugating enzyme complex;0.0421775168185121!GO:0000118;histone deacetylase complex;0.0425036720869594!GO:0032984;macromolecular complex disassembly;0.0425155637386945!GO:0031903;microbody membrane;0.0426557347080777!GO:0005778;peroxisomal membrane;0.0426557347080777!GO:0008426;protein kinase C inhibitor activity;0.0427353306121595!GO:0000049;tRNA binding;0.0428902692427082!GO:0048468;cell development;0.0430484458203057!GO:0051128;regulation of cellular component organization and biogenesis;0.0430484458203057!GO:0042770;DNA damage response, signal transduction;0.0433087726921954!GO:0044255;cellular lipid metabolic process;0.0435411830791252!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.043654024538961!GO:0046822;regulation of nucleocytoplasmic transport;0.0440058355676093!GO:0005869;dynactin complex;0.044478745143496!GO:0005777;peroxisome;0.0446653247484168!GO:0042579;microbody;0.0446653247484168!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0450765168930728!GO:0000428;DNA-directed RNA polymerase complex;0.0450765168930728!GO:0006497;protein amino acid lipidation;0.0452857107492851!GO:0035035;histone acetyltransferase binding;0.0452934048999707!GO:0005844;polysome;0.0453261182111219!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0457587046696951!GO:0004518;nuclease activity;0.0459005955183201!GO:0031902;late endosome membrane;0.0467715336007099!GO:0044433;cytoplasmic vesicle part;0.0473260714712164!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0475420125789243!GO:0006010;glucose 6-phosphate utilization;0.0476703870506843!GO:0004448;isocitrate dehydrogenase activity;0.0480752735146751!GO:0015036;disulfide oxidoreductase activity;0.0480752735146751!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0481125950779781!GO:0004177;aminopeptidase activity;0.0483814653103505!GO:0008632;apoptotic program;0.0485294712142654!GO:0005784;translocon complex;0.048561740465223!GO:0005774;vacuolar membrane;0.0492866623715528!GO:0004680;casein kinase activity;0.0492866623715528 | |||
|sample_id=10408 | |sample_id=10408 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=SNAI1..3:2.37325512223;ZEB1:1.96181375332;NKX2-3_NKX2-5:1.74933621455;ADNP_IRX_SIX_ZHX:1.62004488518;NFE2L2:1.36556182257;XCPE1{core}:1.21661690949;MYOD1:1.13268529394;VSX1,2:1.12360871963;SP1:1.10677880135;TFAP2{A,C}:0.937781176816;ELK1,4_GABP{A,B1}:0.778113801539;FOX{F1,F2,J1}:0.761990706039;ZNF148:0.757023355624;PPARG:0.756151106871;FOXO1,3,4:0.747944032943;STAT5{A,B}:0.720202390038;NRF1:0.675553824451;FOXN1:0.649431268849;FOXQ1:0.585739969411;FOX{I1,J2}:0.58541353859;SOX2:0.583333976834;ALX1:0.553719717457;RFX1:0.543900560048;FOX{D1,D2}:0.518313989015;TEAD1:0.51647183688;TLX1..3_NFIC{dimer}:0.469584396524;NR1H4:0.465889682831;RFX2..5_RFXANK_RFXAP:0.448907228958;PAX8:0.446190851571;ONECUT1,2:0.445626099531;E2F1..5:0.439519588753;LMO2:0.429461855946;ZNF143:0.418080889517;SOX17:0.416434479484;NANOG:0.400303711495;NFE2:0.399228666955;RBPJ:0.390676197602;GFI1:0.387153723462;GLI1..3:0.37327820271;NKX3-2:0.370996420629;LEF1_TCF7_TCF7L1,2:0.329022133611;PBX1:0.32082237076;MAZ:0.285131014925;HOX{A6,A7,B6,B7}:0.275724190485;FOXA2:0.273648022405;NFY{A,B,C}:0.244300501748;FOS_FOS{B,L1}_JUN{B,D}:0.240500179637;IKZF1:0.233019134766;RORA:0.215733726117;CDC5L:0.213017840829;GTF2A1,2:0.212785491109;PAX5:0.199853757662;PAX6:0.197349171501;POU1F1:0.188345401486;ARID5B:0.185460358708;TP53:0.18485763985;POU2F1..3:0.176918118493;DBP:0.159071071123;POU3F1..4:0.147132991513;ESR1:0.14329538068;HAND1,2:0.137093492298;MYB:0.135843180214;SOX{8,9,10}:0.135034037997;ELF1,2,4:0.127349440581;BACH2:0.12043627982;TBX4,5:0.114381912825;TEF:0.113621618653;AR:0.0965954620348;MEF2{A,B,C,D}:0.0894628195453;GATA6:0.0839544839768;PAX1,9:0.0808924282279;HNF4A_NR2F1,2:0.0640066413939;OCT4_SOX2{dimer}:0.0563134420534;FOSL2:0.054857202065;EBF1:0.0514442270888;TFAP2B:0.0298396700942;TFCP2:0.0251798514739;NKX2-1,4:0.0251556162813;MED-1{core}:-0.00184310513874;PRRX1,2:-0.0054461618803;GTF2I:-0.0185186221266;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0198290363912;ZNF423:-0.0290678266742;NR6A1:-0.0512980207387;POU5F1:-0.0559253798177;CUX2:-0.060657885299;IRF7:-0.0607123748393;RXRA_VDR{dimer}:-0.0699573027236;bHLH_family:-0.0756708447916;HNF1A:-0.0784678604877;NR5A1,2:-0.0868145442452;BREu{core}:-0.0897225524987;HOX{A5,B5}:-0.0950306405576;MYBL2:-0.0954258900491;PATZ1:-0.0994760663231;EN1,2:-0.100435005675;TFDP1:-0.101683284815;ZFP161:-0.107186378742;T:-0.11487046608;ESRRA:-0.137395237601;NFIL3:-0.139378268985;TAL1_TCF{3,4,12}:-0.163092287965;MTE{core}:-0.170376311783;ETS1,2:-0.17517957162;PITX1..3:-0.177902639868;TOPORS:-0.18217427429;LHX3,4:-0.183772449734;MTF1:-0.204321590407;HIC1:-0.207296454852;SOX5:-0.224678990228;HMGA1,2:-0.230339217351;PDX1:-0.234100042834;CRX:-0.238678448579;STAT1,3:-0.240792201771;PAX3,7:-0.262396564215;HBP1_HMGB_SSRP1_UBTF:-0.284488800041;RREB1:-0.299040947405;IKZF2:-0.30896739468;HLF:-0.309773937018;YY1:-0.316866084077;NFATC1..3:-0.333156904069;NFKB1_REL_RELA:-0.345378307176;ZBTB16:-0.347430165384;SREBF1,2:-0.386573594831;HSF1,2:-0.401109578474;HOX{A4,D4}:-0.431731795112;ZNF238:-0.434596258713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.442024288364;REST:-0.472887121105;RUNX1..3:-0.501204191609;FOXP1:-0.503448163648;TLX2:-0.509799967923;CDX1,2,4:-0.533280196935;EGR1..3:-0.538944039203;GZF1:-0.545253874848;ZBTB6:-0.565668271702;IRF1,2:-0.569792958834;FOXM1:-0.58353309266;NHLH1,2:-0.586984081497;JUN:-0.587815579885;SPIB:-0.593064483535;STAT2,4,6:-0.600242407724;HOXA9_MEIS1:-0.6029436757;NKX6-1,2:-0.617226138928;SPI1:-0.617967353273;XBP1:-0.623006294972;PRDM1:-0.625029035516;CEBPA,B_DDIT3:-0.628057636556;NR3C1:-0.640307381729;FOXP3:-0.651914216288;PAX2:-0.658231656082;BPTF:-0.666624963811;POU6F1:-0.66776512449;KLF4:-0.67327316687;TBP:-0.698518217027;GFI1B:-0.709042611796;MZF1:-0.724230114813;ZNF384:-0.760345691612;TFAP4:-0.765315211528;AHR_ARNT_ARNT2:-0.791354091411;NFIX:-0.799427875672;FOXL1:-0.809086677879;ATF5_CREB3:-0.842867742017;MYFfamily:-0.849476886339;PAX4:-0.898304436224;ALX4:-0.938315362031;DMAP1_NCOR{1,2}_SMARC:-0.94745439504;FOXD3:-0.963947363344;NKX2-2,8:-0.967052436569;ZIC1..3:-0.968550594426;CREB1:-1.04595752062;ATF4:-1.05043630391;ATF6:-1.08751237229;TGIF1:-1.09812277792;EP300:-1.12582335256;ATF2:-1.16484444243;SRF:-1.16715041068;GATA4:-1.18339038199;SPZ1:-1.20279010032;SMAD1..7,9:-1.21607766415;AIRE:-1.23431945313;UFEwm:-1.285006931;NANOG{mouse}:-1.34606409065;NKX3-1:-1.41056524571;HIF1A:-1.41947893758;EVI1:-1.4964847378;HMX1:-1.60151492539;HES1:-1.65796708478;GCM1,2:-1.86655365043;MAFB:-1.88131665284;RXR{A,B,G}:-2.01480158107;NFE2L1:-2.28433135803 | |top_motifs=SNAI1..3:2.37325512223;ZEB1:1.96181375332;NKX2-3_NKX2-5:1.74933621455;ADNP_IRX_SIX_ZHX:1.62004488518;NFE2L2:1.36556182257;XCPE1{core}:1.21661690949;MYOD1:1.13268529394;VSX1,2:1.12360871963;SP1:1.10677880135;TFAP2{A,C}:0.937781176816;ELK1,4_GABP{A,B1}:0.778113801539;FOX{F1,F2,J1}:0.761990706039;ZNF148:0.757023355624;PPARG:0.756151106871;FOXO1,3,4:0.747944032943;STAT5{A,B}:0.720202390038;NRF1:0.675553824451;FOXN1:0.649431268849;FOXQ1:0.585739969411;FOX{I1,J2}:0.58541353859;SOX2:0.583333976834;ALX1:0.553719717457;RFX1:0.543900560048;FOX{D1,D2}:0.518313989015;TEAD1:0.51647183688;TLX1..3_NFIC{dimer}:0.469584396524;NR1H4:0.465889682831;RFX2..5_RFXANK_RFXAP:0.448907228958;PAX8:0.446190851571;ONECUT1,2:0.445626099531;E2F1..5:0.439519588753;LMO2:0.429461855946;ZNF143:0.418080889517;SOX17:0.416434479484;NANOG:0.400303711495;NFE2:0.399228666955;RBPJ:0.390676197602;GFI1:0.387153723462;GLI1..3:0.37327820271;NKX3-2:0.370996420629;LEF1_TCF7_TCF7L1,2:0.329022133611;PBX1:0.32082237076;MAZ:0.285131014925;HOX{A6,A7,B6,B7}:0.275724190485;FOXA2:0.273648022405;NFY{A,B,C}:0.244300501748;FOS_FOS{B,L1}_JUN{B,D}:0.240500179637;IKZF1:0.233019134766;RORA:0.215733726117;CDC5L:0.213017840829;GTF2A1,2:0.212785491109;PAX5:0.199853757662;PAX6:0.197349171501;POU1F1:0.188345401486;ARID5B:0.185460358708;TP53:0.18485763985;POU2F1..3:0.176918118493;DBP:0.159071071123;POU3F1..4:0.147132991513;ESR1:0.14329538068;HAND1,2:0.137093492298;MYB:0.135843180214;SOX{8,9,10}:0.135034037997;ELF1,2,4:0.127349440581;BACH2:0.12043627982;TBX4,5:0.114381912825;TEF:0.113621618653;AR:0.0965954620348;MEF2{A,B,C,D}:0.0894628195453;GATA6:0.0839544839768;PAX1,9:0.0808924282279;HNF4A_NR2F1,2:0.0640066413939;OCT4_SOX2{dimer}:0.0563134420534;FOSL2:0.054857202065;EBF1:0.0514442270888;TFAP2B:0.0298396700942;TFCP2:0.0251798514739;NKX2-1,4:0.0251556162813;MED-1{core}:-0.00184310513874;PRRX1,2:-0.0054461618803;GTF2I:-0.0185186221266;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0198290363912;ZNF423:-0.0290678266742;NR6A1:-0.0512980207387;POU5F1:-0.0559253798177;CUX2:-0.060657885299;IRF7:-0.0607123748393;RXRA_VDR{dimer}:-0.0699573027236;bHLH_family:-0.0756708447916;HNF1A:-0.0784678604877;NR5A1,2:-0.0868145442452;BREu{core}:-0.0897225524987;HOX{A5,B5}:-0.0950306405576;MYBL2:-0.0954258900491;PATZ1:-0.0994760663231;EN1,2:-0.100435005675;TFDP1:-0.101683284815;ZFP161:-0.107186378742;T:-0.11487046608;ESRRA:-0.137395237601;NFIL3:-0.139378268985;TAL1_TCF{3,4,12}:-0.163092287965;MTE{core}:-0.170376311783;ETS1,2:-0.17517957162;PITX1..3:-0.177902639868;TOPORS:-0.18217427429;LHX3,4:-0.183772449734;MTF1:-0.204321590407;HIC1:-0.207296454852;SOX5:-0.224678990228;HMGA1,2:-0.230339217351;PDX1:-0.234100042834;CRX:-0.238678448579;STAT1,3:-0.240792201771;PAX3,7:-0.262396564215;HBP1_HMGB_SSRP1_UBTF:-0.284488800041;RREB1:-0.299040947405;IKZF2:-0.30896739468;HLF:-0.309773937018;YY1:-0.316866084077;NFATC1..3:-0.333156904069;NFKB1_REL_RELA:-0.345378307176;ZBTB16:-0.347430165384;SREBF1,2:-0.386573594831;HSF1,2:-0.401109578474;HOX{A4,D4}:-0.431731795112;ZNF238:-0.434596258713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.442024288364;REST:-0.472887121105;RUNX1..3:-0.501204191609;FOXP1:-0.503448163648;TLX2:-0.509799967923;CDX1,2,4:-0.533280196935;EGR1..3:-0.538944039203;GZF1:-0.545253874848;ZBTB6:-0.565668271702;IRF1,2:-0.569792958834;FOXM1:-0.58353309266;NHLH1,2:-0.586984081497;JUN:-0.587815579885;SPIB:-0.593064483535;STAT2,4,6:-0.600242407724;HOXA9_MEIS1:-0.6029436757;NKX6-1,2:-0.617226138928;SPI1:-0.617967353273;XBP1:-0.623006294972;PRDM1:-0.625029035516;CEBPA,B_DDIT3:-0.628057636556;NR3C1:-0.640307381729;FOXP3:-0.651914216288;PAX2:-0.658231656082;BPTF:-0.666624963811;POU6F1:-0.66776512449;KLF4:-0.67327316687;TBP:-0.698518217027;GFI1B:-0.709042611796;MZF1:-0.724230114813;ZNF384:-0.760345691612;TFAP4:-0.765315211528;AHR_ARNT_ARNT2:-0.791354091411;NFIX:-0.799427875672;FOXL1:-0.809086677879;ATF5_CREB3:-0.842867742017;MYFfamily:-0.849476886339;PAX4:-0.898304436224;ALX4:-0.938315362031;DMAP1_NCOR{1,2}_SMARC:-0.94745439504;FOXD3:-0.963947363344;NKX2-2,8:-0.967052436569;ZIC1..3:-0.968550594426;CREB1:-1.04595752062;ATF4:-1.05043630391;ATF6:-1.08751237229;TGIF1:-1.09812277792;EP300:-1.12582335256;ATF2:-1.16484444243;SRF:-1.16715041068;GATA4:-1.18339038199;SPZ1:-1.20279010032;SMAD1..7,9:-1.21607766415;AIRE:-1.23431945313;UFEwm:-1.285006931;NANOG{mouse}:-1.34606409065;NKX3-1:-1.41056524571;HIF1A:-1.41947893758;EVI1:-1.4964847378;HMX1:-1.60151492539;HES1:-1.65796708478;GCM1,2:-1.86655365043;MAFB:-1.88131665284;RXR{A,B,G}:-2.01480158107;NFE2L1:-2.28433135803 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10408-106B3;search_select_hide=table117:FF:10408-106B3 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | lung adenocarcinoma cell line:PC-14 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10726 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10726
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10726
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.684 |
| 10 | 10 | 0.377 |
| 100 | 100 | 0.681 |
| 101 | 101 | 0.428 |
| 102 | 102 | 0.609 |
| 103 | 103 | 0.515 |
| 104 | 104 | 0.871 |
| 105 | 105 | 0.0426 |
| 106 | 106 | 0.00722 |
| 107 | 107 | 0.553 |
| 108 | 108 | 0.38 |
| 109 | 109 | 0.0375 |
| 11 | 11 | 0.392 |
| 110 | 110 | 0.981 |
| 111 | 111 | 0.615 |
| 112 | 112 | 0.242 |
| 113 | 113 | 0.235 |
| 114 | 114 | 0.393 |
| 115 | 115 | 0.356 |
| 116 | 116 | 0.0491 |
| 117 | 117 | 0.482 |
| 118 | 118 | 0.563 |
| 119 | 119 | 0.773 |
| 12 | 12 | 0.943 |
| 120 | 120 | 0.652 |
| 121 | 121 | 0.762 |
| 122 | 122 | 0.00687 |
| 123 | 123 | 0.379 |
| 124 | 124 | 0.6 |
| 125 | 125 | 0.126 |
| 126 | 126 | 0.493 |
| 127 | 127 | 0.971 |
| 128 | 128 | 0.161 |
| 129 | 129 | 0.0203 |
| 13 | 13 | 0.296 |
| 130 | 130 | 0.169 |
| 131 | 131 | 0.0521 |
| 132 | 132 | 0.566 |
| 133 | 133 | 0.0264 |
| 134 | 134 | 0.349 |
| 135 | 135 | 0.12 |
| 136 | 136 | 0.0184 |
| 137 | 137 | 0.256 |
| 138 | 138 | 0.957 |
| 139 | 139 | 0.464 |
| 14 | 14 | 0.844 |
| 140 | 140 | 0.611 |
| 141 | 141 | 0.809 |
| 142 | 142 | 0.946 |
| 143 | 143 | 0.0218 |
| 144 | 144 | 0.015 |
| 145 | 145 | 0.626 |
| 146 | 146 | 0.0918 |
| 147 | 147 | 0.251 |
| 148 | 148 | 0.33 |
| 149 | 149 | 0.478 |
| 15 | 15 | 0.413 |
| 150 | 150 | 0.906 |
| 151 | 151 | 0.868 |
| 152 | 152 | 0.54 |
| 153 | 153 | 0.177 |
| 154 | 154 | 0.0265 |
| 155 | 155 | 0.623 |
| 156 | 156 | 0.837 |
| 157 | 157 | 0.922 |
| 158 | 158 | 0.866 |
| 159 | 159 | 0.732 |
| 16 | 16 | 0.621 |
| 160 | 160 | 0.905 |
| 161 | 161 | 0.85 |
| 162 | 162 | 0.432 |
| 163 | 163 | 0.581 |
| 164 | 164 | 0.307 |
| 165 | 165 | 0.517 |
| 166 | 166 | 0.0352 |
| 167 | 167 | 0.333 |
| 168 | 168 | 0.772 |
| 169 | 169 | 0.274 |
| 17 | 17 | 0.434 |
| 18 | 18 | 0.0572 |
| 19 | 19 | 0.432 |
| 2 | 2 | 0.761 |
| 20 | 20 | 0.788 |
| 21 | 21 | 0.532 |
| 22 | 22 | 0.304 |
| 23 | 23 | 0.831 |
| 24 | 24 | 0.181 |
| 25 | 25 | 0.827 |
| 26 | 26 | 0.604 |
| 27 | 27 | 0.674 |
| 28 | 28 | 0.486 |
| 29 | 29 | 0.428 |
| 3 | 3 | 0.776 |
| 30 | 30 | 0.0656 |
| 31 | 31 | 0.676 |
| 32 | 32 | 0.00732 |
| 33 | 33 | 0.511 |
| 34 | 34 | 0.738 |
| 35 | 35 | 0.0204 |
| 36 | 36 | 0.787 |
| 37 | 37 | 0.122 |
| 38 | 38 | 0.393 |
| 39 | 39 | 0.582 |
| 4 | 4 | 0.786 |
| 40 | 40 | 0.31 |
| 41 | 41 | 0.0555 |
| 42 | 42 | 0.463 |
| 43 | 43 | 0.296 |
| 44 | 44 | 0.475 |
| 45 | 45 | 0.0354 |
| 46 | 46 | 0.514 |
| 47 | 47 | 0.865 |
| 48 | 48 | 0.776 |
| 49 | 49 | 0.152 |
| 5 | 5 | 0.895 |
| 50 | 50 | 0.416 |
| 51 | 51 | 0.96 |
| 52 | 52 | 0.83 |
| 53 | 53 | 0.89 |
| 54 | 54 | 0.624 |
| 55 | 55 | 0.923 |
| 56 | 56 | 0.38 |
| 57 | 57 | 0.795 |
| 58 | 58 | 0.793 |
| 59 | 59 | 0.789 |
| 6 | 6 | 0.25 |
| 60 | 60 | 0.457 |
| 61 | 61 | 0.132 |
| 62 | 62 | 0.423 |
| 63 | 63 | 0.59 |
| 64 | 64 | 0.916 |
| 65 | 65 | 0.905 |
| 66 | 66 | 0.0735 |
| 67 | 67 | 0.499 |
| 68 | 68 | 1.41171e-4 |
| 69 | 69 | 0.923 |
| 7 | 7 | 0.476 |
| 70 | 70 | 0.557 |
| 71 | 71 | 0.931 |
| 72 | 72 | 0.78 |
| 73 | 73 | 0.976 |
| 74 | 74 | 0.157 |
| 75 | 75 | 0.896 |
| 76 | 76 | 0.989 |
| 77 | 77 | 0.0857 |
| 78 | 78 | 0.455 |
| 79 | 79 | 0.00144 |
| 8 | 8 | 0.411 |
| 80 | 80 | 0.694 |
| 81 | 81 | 0.0712 |
| 82 | 82 | 0.00779 |
| 83 | 83 | 0.317 |
| 84 | 84 | 0.987 |
| 85 | 85 | 0.04 |
| 86 | 86 | 0.25 |
| 87 | 87 | 0.0915 |
| 88 | 88 | 0.58 |
| 89 | 89 | 0.991 |
| 9 | 9 | 0.994 |
| 90 | 90 | 0.757 |
| 91 | 91 | 0.843 |
| 92 | 92 | 0.1 |
| 93 | 93 | 0.97 |
| 94 | 94 | 0.295 |
| 95 | 95 | 0.971 |
| 96 | 96 | 0.28 |
| 97 | 97 | 0.0812 |
| 98 | 98 | 0.236 |
| 99 | 99 | 0.465 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10726
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102877 PC-14 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
299 (adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0101911 (lung adenocarcinoma cell line sample)
0100762 (lung cancer cell line sample)
0102877 (PC-14 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
