FF:10413-106B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005418 | |DRA_sample_Accession=CAGE@SAMD00005418 | ||
|accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582 | |accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582;DRZ011547;DRZ012932 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr7:27153454..27153469,-!p2@HOXA3!1.64!42.48!HOXA3;;chr8:72756637..72756664,-!p3@MSC!1.54!38.43!MSC;;chr2:176969228..176969260,+!p1@HOXD11!1.49!30.05!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!1.47!58.95!C11orf9;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.78!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!1.45!27.45!ZMAT4;;chr8:72756667..72756736,-!p2@MSC!1.43!40.45!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.88!TWIST1;;chr8:72756063..72756125,-!p1@MSC!1.37!44.79!MSC;;chr7:27183291..27183324,-!p1@HOXA5!1.34!20.80!HOXA5;;chr8:72756267..72756296,-!p4@MSC!1.29!26.87!MSC;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.49!HOXD11;;chr1:119530493..119530572,-!p1@TBX15!1.26!17.05!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!1.24!331.43!SNAI2;;chr7:27183263..27183284,-!p2@HOXA5!1.24!16.47!HOXA5;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.98!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!1.20!22.54!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.45!KDM5D;;chr7:27183114..27183138,-!p3@HOXA5!1.16!13.58!HOXA5;;chr7:27183191..27183214,-!p4@HOXA5!1.11!11.85!HOXA5;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.85!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.52!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!1.10!26.29!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.34!PITX1;;chr8:72755987..72756002,-!p7@MSC!1.09!11.27!MSC;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.81!TOX2;;chr12:85673977..85674015,+!p1@ALX1!1.05!10.11!ALX1;;chr1:78149041..78149142,-!p1@ZZZ3!1.04!189.84!ZZZ3;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.27!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!1.01!9.25!HOXA3;;chr1:158979872..158979898,+!p3@IFI16!1.00!28.32!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.45!TFAP2A;;chr15:37392094..37392116,-!p6@MEIS2!0.98!10.69!MEIS2;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.72!GATA6;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.07!TOX2;;chr8:37553292..37553317,+!p1@ZNF703!0.93!186.37!ZNF703;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.51!HOXA2;;chr7:27153613..27153630,-!p6@HOXA3!0.93!7.51!HOXA3;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.51!PAX3;;chr12:26277817..26277863,-!p2@BHLHE41!0.92!10.11!BHLHE41;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.38!TFAP2A;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.22!ZIC1;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.27!ZFP64;;chr21:38071430..38071456,+!p1@SIM2!0.90!6.93!SIM2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.93!PKNOX2;;chr2:157189180..157189290,-!p1@NR4A2!0.89!36.99!NR4A2;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.65!FOXD1;;chr8:80679993..80680011,-!p1@HEY1!0.89!10.11!HEY1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.93!SHOX2;;chr1:59249645..59249656,-!p4@JUN!0.86!16.47!JUN;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.09!SKIL;;chr3:147111198..147111225,+!p4@ZIC1!0.85!6.07!ZIC1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.07!PITX1;;chr7:27183141..27183152,-!p6@HOXA5!0.85!6.07!HOXA5;;chr1:59165724..59165751,-!p1@MYSM1!0.84!143.32!MYSM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.87!ZFHX4;;chr1:164528616..164528660,+!p5@PBX1!0.84!12.71!PBX1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.80!MSC;;chr15:37390850..37390909,-!p3@MEIS2!0.83!11.85!MEIS2;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.78!FOXG1;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.29!ZBTB20;;chr2:172967621..172967637,-!p1@DLX2!0.81!15.60!DLX2;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.09!GATA6;;chr1:164528410..164528428,+!p1@PBX1!0.80!43.05!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.03!GLI3;;chr1:170633348..170633399,+!p2@PRRX1!0.80!7.51!PRRX1;;chr8:72756023..72756055,-!p6@MSC!0.80!6.65!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.94!BHLHE41;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.14!IFI16;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.07!RUNX2;;chr8:72756380..72756427,-!p8@MSC!0.79!5.20!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.20!ZFHX4;;chr1:119530636..119530653,-!p2@TBX15!0.79!5.20!TBX15;;chr21:38071403..38071428,+!p2@SIM2!0.79!5.20!SIM2;;chr20:50179368..50179392,-!p2@NFATC2!0.78!6.65!NFATC2;;chr19:50432453..50432468,+!p1@ATF5!0.77!302.53!ATF5;;chr6:45390002..45390023,+!p6@RUNX2!0.77!8.96!RUNX2;;chr15:76629123..76629151,+!p1@ISL2!0.77!5.49!ISL2;;chr16:51185172..51185197,-!p1@SALL1!0.77!4.91!SALL1;;chr12:77459306..77459365,-!p1@E2F7!0.76!66.17!E2F7;;chr15:37392724..37392757,-!p1@MEIS2!0.76!23.98!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.38!ZNF521;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.31!TBX2;;chr1:200379104..200379128,-!p2@ZNF281!0.74!11.85!ZNF281;;chr3:12329397..12329433,+!p2@PPARG!0.74!10.98!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.09!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.38!GATA6;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.33!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.33!DLX1;;chr6:28321909..28321965,-!p3@ZNF323!0.73!4.33!ZNF323;;chr7:19156632..19156652,-!p3@TWIST1!0.73!4.33!TWIST1;;chr7:27153590..27153608,-!p7@HOXA3!0.73!4.33!HOXA3;;chr1:164528445..164528459,+!p2@PBX1!0.72!14.45!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.42!HOXB2;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.27!EBF1;;chr1:164528687..164528711,+!p6@PBX1!0.71!4.91!PBX1;;chr1:78148324..78148365,-!p2@ZZZ3!0.70!43.34!ZZZ3;;chr21:36421535..36421610,-!p2@RUNX1!0.70!15.89!RUNX1;;chr17:46655730..46655791,-!p1@HOXB4!0.70!10.98!HOXB4;;chr8:128750175..128750201,+!p8@MYC!0.70!7.51!MYC;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.05!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.05!SOX11;;chr2:8822176..8822196,+!p1@ID2!0.69!633.09!ID2;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr15:37392616..37392638,-!p2@MEIS2!0.69!13.58!MEIS2;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.93!MLLT11;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.43!MAFB;;chr7:138666053..138666146,-!p1@KIAA1549!0.68!17.91!KIAA1549;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.68!8.96!ZNF395;;chr2:176969097..176969109,+!p3@HOXD11!0.68!3.76!HOXD11;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.76!PITX2;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.76!HAND2;;chr1:164528942..164528964,+!p11@PBX1!0.68!3.76!PBX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.76!PKNOX2;;chr14:37131058..37131139,+!p1@PAX9!0.68!3.76!PAX9;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.75!FOSB;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.45!IFI16;;chr1:78149157..78149168,-!p4@ZZZ3!0.67!4.33!ZZZ3;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.38!ZNF436;;chr19:42788636..42788660,+!p1@CIC!0.66!6.36!CIC;;chr7:17338266..17338282,+!p1@AHR!0.65!43.63!AHR;;chr3:71630980..71631110,-!p3@FOXP1!0.65!13.87!FOXP1;;chr3:168864315..168864339,-!p2@MECOM!0.65!6.07!MECOM;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.91!ARNT2;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.47!RFX8;;chr1:119530857..119530884,-!p4@TBX15!0.65!3.47!TBX15;;chr12:56414795..56414836,+!p4@IKZF4!0.65!3.47!IKZF4;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.69!ZNF415;;chr19:20188776..20188826,+!p1@ZNF90!0.64!10.11!ZNF90;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.96!RUNX2;;chr19:20011775..20011800,+!p2@ZNF93!0.64!6.65!ZNF93;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.49!IFI16;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.33!MEIS2;;chr3:169381420..169381535,-!p1@MECOM!0.64!4.05!MECOM;;chr20:306489..306564,+!p1@SOX12!0.63!42.19!SOX12;;chr1:211433275..211433335,+!p2@RCOR3!0.63!11.56!RCOR3;;chr1:164528911..164528940,+!p7@PBX1!0.63!5.20!PBX1;;chr12:54694758..54694805,-!p1@NFE2!0.63!4.05!NFE2;;chr17:70117153..70117174,+!p1@SOX9!0.62!39.30!SOX9;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.21!KLF7;;chr8:37553261..37553282,+!p2@ZNF703!0.62!28.90!ZNF703;;chr19:20011744..20011770,+!p1@ZNF93!0.62!14.16!ZNF93;;chr9:16870659..16870675,-!p2@BNC2!0.62!4.05!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.18!ZNF323;;chr6:45390137..45390148,+!p12@RUNX2!0.62!3.18!RUNX2;;chr8:49834430..49834446,-!p5@SNAI2!0.62!3.18!SNAI2;;chr8:72756194..72756208,-!p9@MSC!0.62!3.18!MSC;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.18!ZIC1;;chr4:174451370..174451387,-!p1@HAND2!0.62!3.18!HAND2;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.80!NR4A3;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.91!HOXB4;;chr12:26277929..26277955,-!p3@BHLHE41!0.61!4.62!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.51!GLI2;;chr10:64134120..64134183,+!p1@ZNF365!0.60!3.76!ZNF365;;chr8:80680024..80680046,-!p2@HEY1!0.60!3.47!HEY1;;chr7:64838786..64838809,+!p2@ZNF92!0.59!19.94!ZNF92;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.40!SMARCD3;;chr3:12329358..12329393,+!p3@PPARG!0.59!8.09!PPARG;;chr2:166326200..166326216,+!p1@CSRNP3!0.59!4.62!CSRNP3;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.89!RFX8;;chr11:32457075..32457095,-!p1@WT1!0.59!2.89!WT1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.89!SEBOX;;chr7:27153443..27153450,-!p8@HOXA3!0.59!2.89!HOXA3;;chr8:72756522..72756533,-!p13@MSC!0.59!2.89!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.59!2.89!RUNX1T1;;chr19:53289995..53290050,-!p1@ZNF600!0.58!13.87!ZNF600;;chr6:28411241..28411284,-!p1@ZSCAN23!0.58!10.40!ZSCAN23;;chr9:114287433..114287513,+!p1@ZNF483!0.58!8.38!ZNF483;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.91!EBF4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.58!4.62!ZNF853;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.33!HOXB7;;chr7:64467057..64467078,-!p1@ZNF117!0.57!62.99!ZNF117;;chr13:41593425..41593480,-!p1@ELF1!0.57!21.09!ELF1;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.29!CREB3L4;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.20!TBX2;;chr1:164528588..164528610,+!p8@PBX1!0.57!4.62!PBX1;;chr15:37390482..37390572,-!p7@MEIS2!0.57!4.05!MEIS2;;chr17:7590797..7590815,-!p1@TP53!0.56!143.32!TP53;;chr17:17740287..17740307,-!p1@SREBF1!0.56!87.55!SREBF1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.56!18.20!ZNF10;;chr16:79633894..79633954,-!p3@MAF!0.56!5.78!MAF;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.49!ZNF695;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.76!TBX2;;chr7:27183156..27183167,-!p8@HOXA5!0.56!2.60!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.56!2.60!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.60!SHOX2;;chr9:168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| |expression_enrichment_score=chr7:27153454..27153469,-!p2@HOXA3!1.64!42.48!HOXA3;;chr8:72756637..72756664,-!p3@MSC!1.54!38.43!MSC;;chr2:176969228..176969260,+!p1@HOXD11!1.49!30.05!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!1.47!58.95!C11orf9;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.78!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!1.45!27.45!ZMAT4;;chr8:72756667..72756736,-!p2@MSC!1.43!40.45!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.88!TWIST1;;chr8:72756063..72756125,-!p1@MSC!1.37!44.79!MSC;;chr7:27183291..27183324,-!p1@HOXA5!1.34!20.80!HOXA5;;chr8:72756267..72756296,-!p4@MSC!1.29!26.87!MSC;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.49!HOXD11;;chr1:119530493..119530572,-!p1@TBX15!1.26!17.05!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!1.24!331.43!SNAI2;;chr7:27183263..27183284,-!p2@HOXA5!1.24!16.47!HOXA5;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.98!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!1.20!22.54!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.45!KDM5D;;chr7:27183114..27183138,-!p3@HOXA5!1.16!13.58!HOXA5;;chr7:27183191..27183214,-!p4@HOXA5!1.11!11.85!HOXA5;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.85!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.52!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!1.10!26.29!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.34!PITX1;;chr8:72755987..72756002,-!p7@MSC!1.09!11.27!MSC;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.81!TOX2;;chr12:85673977..85674015,+!p1@ALX1!1.05!10.11!ALX1;;chr1:78149041..78149142,-!p1@ZZZ3!1.04!189.84!ZZZ3;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.27!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!1.01!9.25!HOXA3;;chr1:158979872..158979898,+!p3@IFI16!1.00!28.32!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.45!TFAP2A;;chr15:37392094..37392116,-!p6@MEIS2!0.98!10.69!MEIS2;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.72!GATA6;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.07!TOX2;;chr8:37553292..37553317,+!p1@ZNF703!0.93!186.37!ZNF703;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.51!HOXA2;;chr7:27153613..27153630,-!p6@HOXA3!0.93!7.51!HOXA3;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.51!PAX3;;chr12:26277817..26277863,-!p2@BHLHE41!0.92!10.11!BHLHE41;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.38!TFAP2A;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.22!ZIC1;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.27!ZFP64;;chr21:38071430..38071456,+!p1@SIM2!0.90!6.93!SIM2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.93!PKNOX2;;chr2:157189180..157189290,-!p1@NR4A2!0.89!36.99!NR4A2;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.65!FOXD1;;chr8:80679993..80680011,-!p1@HEY1!0.89!10.11!HEY1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.93!SHOX2;;chr1:59249645..59249656,-!p4@JUN!0.86!16.47!JUN;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.09!SKIL;;chr3:147111198..147111225,+!p4@ZIC1!0.85!6.07!ZIC1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.07!PITX1;;chr7:27183141..27183152,-!p6@HOXA5!0.85!6.07!HOXA5;;chr1:59165724..59165751,-!p1@MYSM1!0.84!143.32!MYSM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.87!ZFHX4;;chr1:164528616..164528660,+!p5@PBX1!0.84!12.71!PBX1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.80!MSC;;chr15:37390850..37390909,-!p3@MEIS2!0.83!11.85!MEIS2;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.78!FOXG1;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.29!ZBTB20;;chr2:172967621..172967637,-!p1@DLX2!0.81!15.60!DLX2;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.09!GATA6;;chr1:164528410..164528428,+!p1@PBX1!0.80!43.05!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.03!GLI3;;chr1:170633348..170633399,+!p2@PRRX1!0.80!7.51!PRRX1;;chr8:72756023..72756055,-!p6@MSC!0.80!6.65!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.94!BHLHE41;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.14!IFI16;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.07!RUNX2;;chr8:72756380..72756427,-!p8@MSC!0.79!5.20!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.20!ZFHX4;;chr1:119530636..119530653,-!p2@TBX15!0.79!5.20!TBX15;;chr21:38071403..38071428,+!p2@SIM2!0.79!5.20!SIM2;;chr20:50179368..50179392,-!p2@NFATC2!0.78!6.65!NFATC2;;chr19:50432453..50432468,+!p1@ATF5!0.77!302.53!ATF5;;chr6:45390002..45390023,+!p6@RUNX2!0.77!8.96!RUNX2;;chr15:76629123..76629151,+!p1@ISL2!0.77!5.49!ISL2;;chr16:51185172..51185197,-!p1@SALL1!0.77!4.91!SALL1;;chr12:77459306..77459365,-!p1@E2F7!0.76!66.17!E2F7;;chr15:37392724..37392757,-!p1@MEIS2!0.76!23.98!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.38!ZNF521;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.31!TBX2;;chr1:200379104..200379128,-!p2@ZNF281!0.74!11.85!ZNF281;;chr3:12329397..12329433,+!p2@PPARG!0.74!10.98!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.09!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.38!GATA6;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.33!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.33!DLX1;;chr6:28321909..28321965,-!p3@ZNF323!0.73!4.33!ZNF323;;chr7:19156632..19156652,-!p3@TWIST1!0.73!4.33!TWIST1;;chr7:27153590..27153608,-!p7@HOXA3!0.73!4.33!HOXA3;;chr1:164528445..164528459,+!p2@PBX1!0.72!14.45!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.42!HOXB2;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.27!EBF1;;chr1:164528687..164528711,+!p6@PBX1!0.71!4.91!PBX1;;chr1:78148324..78148365,-!p2@ZZZ3!0.70!43.34!ZZZ3;;chr21:36421535..36421610,-!p2@RUNX1!0.70!15.89!RUNX1;;chr17:46655730..46655791,-!p1@HOXB4!0.70!10.98!HOXB4;;chr8:128750175..128750201,+!p8@MYC!0.70!7.51!MYC;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.05!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.05!SOX11;;chr2:8822176..8822196,+!p1@ID2!0.69!633.09!ID2;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr15:37392616..37392638,-!p2@MEIS2!0.69!13.58!MEIS2;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.93!MLLT11;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.43!MAFB;;chr7:138666053..138666146,-!p1@KIAA1549!0.68!17.91!KIAA1549;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.68!8.96!ZNF395;;chr2:176969097..176969109,+!p3@HOXD11!0.68!3.76!HOXD11;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.76!PITX2;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.76!HAND2;;chr1:164528942..164528964,+!p11@PBX1!0.68!3.76!PBX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.76!PKNOX2;;chr14:37131058..37131139,+!p1@PAX9!0.68!3.76!PAX9;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.75!FOSB;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.45!IFI16;;chr1:78149157..78149168,-!p4@ZZZ3!0.67!4.33!ZZZ3;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.38!ZNF436;;chr19:42788636..42788660,+!p1@CIC!0.66!6.36!CIC;;chr7:17338266..17338282,+!p1@AHR!0.65!43.63!AHR;;chr3:71630980..71631110,-!p3@FOXP1!0.65!13.87!FOXP1;;chr3:168864315..168864339,-!p2@MECOM!0.65!6.07!MECOM;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.91!ARNT2;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.47!RFX8;;chr1:119530857..119530884,-!p4@TBX15!0.65!3.47!TBX15;;chr12:56414795..56414836,+!p4@IKZF4!0.65!3.47!IKZF4;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.69!ZNF415;;chr19:20188776..20188826,+!p1@ZNF90!0.64!10.11!ZNF90;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.96!RUNX2;;chr19:20011775..20011800,+!p2@ZNF93!0.64!6.65!ZNF93;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.49!IFI16;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.33!MEIS2;;chr3:169381420..169381535,-!p1@MECOM!0.64!4.05!MECOM;;chr20:306489..306564,+!p1@SOX12!0.63!42.19!SOX12;;chr1:211433275..211433335,+!p2@RCOR3!0.63!11.56!RCOR3;;chr1:164528911..164528940,+!p7@PBX1!0.63!5.20!PBX1;;chr12:54694758..54694805,-!p1@NFE2!0.63!4.05!NFE2;;chr17:70117153..70117174,+!p1@SOX9!0.62!39.30!SOX9;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.21!KLF7;;chr8:37553261..37553282,+!p2@ZNF703!0.62!28.90!ZNF703;;chr19:20011744..20011770,+!p1@ZNF93!0.62!14.16!ZNF93;;chr9:16870659..16870675,-!p2@BNC2!0.62!4.05!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.18!ZNF323;;chr6:45390137..45390148,+!p12@RUNX2!0.62!3.18!RUNX2;;chr8:49834430..49834446,-!p5@SNAI2!0.62!3.18!SNAI2;;chr8:72756194..72756208,-!p9@MSC!0.62!3.18!MSC;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.18!ZIC1;;chr4:174451370..174451387,-!p1@HAND2!0.62!3.18!HAND2;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.80!NR4A3;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.91!HOXB4;;chr12:26277929..26277955,-!p3@BHLHE41!0.61!4.62!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.51!GLI2;;chr10:64134120..64134183,+!p1@ZNF365!0.60!3.76!ZNF365;;chr8:80680024..80680046,-!p2@HEY1!0.60!3.47!HEY1;;chr7:64838786..64838809,+!p2@ZNF92!0.59!19.94!ZNF92;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.40!SMARCD3;;chr3:12329358..12329393,+!p3@PPARG!0.59!8.09!PPARG;;chr2:166326200..166326216,+!p1@CSRNP3!0.59!4.62!CSRNP3;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.89!RFX8;;chr11:32457075..32457095,-!p1@WT1!0.59!2.89!WT1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.89!SEBOX;;chr7:27153443..27153450,-!p8@HOXA3!0.59!2.89!HOXA3;;chr8:72756522..72756533,-!p13@MSC!0.59!2.89!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.59!2.89!RUNX1T1;;chr19:53289995..53290050,-!p1@ZNF600!0.58!13.87!ZNF600;;chr6:28411241..28411284,-!p1@ZSCAN23!0.58!10.40!ZSCAN23;;chr9:114287433..114287513,+!p1@ZNF483!0.58!8.38!ZNF483;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.91!EBF4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.58!4.62!ZNF853;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.33!HOXB7;;chr7:64467057..64467078,-!p1@ZNF117!0.57!62.99!ZNF117;;chr13:41593425..41593480,-!p1@ELF1!0.57!21.09!ELF1;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.29!CREB3L4;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.20!TBX2;;chr1:164528588..164528610,+!p8@PBX1!0.57!4.62!PBX1;;chr15:37390482..37390572,-!p7@MEIS2!0.57!4.05!MEIS2;;chr17:7590797..7590815,-!p1@TP53!0.56!143.32!TP53;;chr17:17740287..17740307,-!p1@SREBF1!0.56!87.55!SREBF1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.56!18.20!ZNF10;;chr16:79633894..79633954,-!p3@MAF!0.56!5.78!MAF;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.49!ZNF695;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.76!TBX2;;chr7:27183156..27183167,-!p8@HOXA5!0.56!2.60!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.56!2.60!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.60!SHOX2;;chr9:168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20.23!ZNF292;;chr1:40627038..40627071,+!p1@RLF!0.24!19.94!RLF;;chr7:28220198..28220269,-!p2@JAZF1!0.24!13.58!JAZF1;;chr19:49865646..49865718,-!p1@TEAD2!0.24!12.71!TEAD2;;chr17:38256822..38256851,-!p1@NR1D1!0.24!11.85!NR1D1;;chr12:51157744..51157796,+!p2@ATF1!0.24!10.11!ATF1;;chr12:133562959..133563013,+!p1@ZNF26!0.24!9.82!ZNF26;;chr5:138609782..138609826,+!p5@MATR3!0.24!9.54!MATR3;;chr20:42295713..42295738,+!p2@MYBL2!0.24!8.67!MYBL2;;chrX:129402866..129402880,-!p1@ZNF280C!0.24!8.38!ZNF280C;;chr17:42298615..42298692,-!p2@UBTF!0.24!7.51!UBTF;;chr17:47492252..47492265,-!p2@PHB!0.24!5.78!PHB;;chr8:145669791..145669834,-!p1@TONSL!0.24!3.76!TONSL;;chr16:4323015..4323067,-!p2@TFAP4!0.24!3.47!TFAP4;;chr3:5021191..5021202,+!p3@BHLHE40!0.24!3.47!BHLHE40;;chr19:42759300..42759324,-!p2@ERF!0.24!3.18!ERF;;chr5:180287681..180287694,-!p2@ZFP62!0.24!2.60!ZFP62;;chr10:63809077..63809089,+!p5@ARID5B!0.24!2.60!ARID5B;;chr8:86089417..86089440,+!p2@E2F5!0.24!2.31!E2F5;;chr7:6676930..6676939,+!p3@ENST00000427912!0.24!2.02!ZNF316;;chr1:43148625..43148710,+!p3@YBX1!0.24!2.02!YBX1;;chr7:86782094..86782108,+!p5@DMTF1!0.24!1.73!DMTF1;;chr17:65821636..65821641,+!p2@BPTF!0.24!1.73!BPTF;;chr8:57123873..57123894,-!p2@PLAG1!0.24!1.44!PLAG1;;chr12:124827609..124827643,-!p9@NCOR2!0.24!1.44!NCOR2;;chr12:80083807..80083859,-!p11@PAWR!0.24!1.16!PAWR;;chr18:6414884..6414942,-!p1@L3MBTL4!0.24!1.16!L3MBTL4;;chr22:30162893..30162907,-!p2@ZMAT5!0.24!1.16!ZMAT5;;chr8:37963466..37963506,+!p3@ASH2L!0.24!1.16!ASH2L;;chr6:41555169..41555196,+!p6@FOXP4!0.24!0.87!FOXP4;;chr6:43140149..43140177,+!p8@SRF!0.24!0.87!SRF;;chr19:6424813..6424835,-!p1@KHSRP!0.23!94.78!KHSRP;;chr19:7580944..7581031,+!p1@ZNF358!0.23!45.65!ZNF358;;chr5:34929677..34929789,+!p1@DNAJC21!0.23!44.79!DNAJC21;;chr12:56583243..56583293,-!p1@SMARCC2!0.23!37.56!SMARCC2;;chr17:65821603..65821635,+!p1@BPTF!0.23!25.43!BPTF;;chr4:95128748..95128794,+!p1@SMARCAD1!0.23!18.78!SMARCAD1;;chr3:179040767..179040866,+!p1@ZNF639!0.23!15.31!ZNF639;;chr20:62601243..62601291,-!p1@ZNF512B!0.23!14.45!ZNF512B;;chr16:68573182..68573228,+!p1@ZFP90!0.23!14.16!ZFP90;;chrX:128657413..128657456,-!p2@SMARCA1!0.23!12.71!SMARCA1;;chr1:247267618..247267674,-!p1@ZNF669!0.23!11.56!ZNF669;;chr14:100705200..100705237,+!p3@YY1!0.23!10.98!YY1;;chr12:133532864..133532899,-!p1@ZNF605!0.23!10.69!ZNF605;;chr19:21106049..21106072,+!p1@ZNF85!0.23!7.80!ZNF85;;chr5:56247935..56247959,-!p1@MIER3!0.23!7.51!MIER3;;chr18:72922811..72922827,+!p1@TSHZ1!0.23!6.93!TSHZ1;;chr10:96122645..96122675,-!p2@NOC3L!0.23!6.65!NOC3L;;chr19:1652555..1652568,-!p2@TCF3!0.23!5.49!TCF3;;chr20:49547593..49547611,-!p3@ADNP!0.23!4.33!ADNP;;chr1:249132556..249132573,+!p3@ZNF672!0.23!3.76!ZNF672;;chr4:76439649..76439662,+!p2@THAP6!0.23!2.89!THAP6;;chr9:73028387..73028418,-!p4@KLF9!0.23!2.31!KLF9;;chr16:29818132..29818144,+!p12@MAZ!0.23!2.31!MAZ;;chr16:3285119..3285133,-!p2@ZNF200!0.23!2.31!ZNF200;;chr19:21512115..21512135,-!p3@ZNF708!0.23!2.31!ZNF708;;chr3:52719870..52719883,-!p4@PBRM1!0.23!2.02!PBRM1;;chr2:231084723..231084734,-!p4@SP110!0.23!1.73!SP110;;chr2:85981222..85981259,+!p2@ATOH8!0.23!1.73!ATOH8;;chr3:71630690..71630750,-!p11@FOXP1!0.23!1.73!FOXP1;;chr16:29818199..29818216,+!p11@MAZ!0.23!1.73!MAZ;;chr17:17723746..17723766,-!p5@SREBF1!0.23!1.73!SREBF1;;chr19:22817119..22817145,+!p1@ZNF492!0.23!1.73!ZNF492;;chr1:151431811..151431832,-!p3@POGZ!0.23!1.73!POGZ;;chr20:48807615..48807644,+!p6@CEBPB!0.23!1.73!CEBPB;;chr9:94186085..94186096,-!p3@NFIL3!0.23!1.73!NFIL3;;chr19:53039233..53039247,+!p2@ZNF808!0.23!1.44!ZNF808;;chr19:13134772..13134822,+!p2@NFIX!0.23!1.44!NFIX;;chr19:50431973..50431998,+!p5@ATF5!0.23!1.16!ATF5;;chr19:56988864..56988924,-!p2@ZNF667!0.23!1.16!ZNF667;;chr1:221052733..221052749,+!p2@HLX!0.23!1.16!HLX;;chr2:231077626..231077651,-!p6@SP110!0.23!1.16!SP110;;chr11:707063..707088,-!p4@DEAF1!0.23!1.16!DEAF1;;chr12:125003087..125003141,-!p4@NCOR2!0.23!1.16!NCOR2;;chr19:20748620..20748630,-!p3@ZNF737!0.23!0.87!ZNF737;;chr3:71179785..71179810,-!p23@FOXP1!0.23!0.87!FOXP1;;chr7:77428248..77428259,+!p5@PHTF2!0.23!0.87!PHTF2;;chr22:29196511..29196541,-!p1@XBP1!0.22!169.90!XBP1;;chr8:73921085..73921125,+!p1@TERF1!0.22!41.61!TERF1;;chr3:187463248..187463264,-!p1@BCL6!0.22!31.78!BCL6;;chr8:37963028..37963070,+!p1@ASH2L!0.22!23.69!ASH2L;;chr1:151431909..151431987,-!p1@POGZ!0.22!17.34!POGZ;;chr19:9695195..9695221,-!p2@ZNF121!0.22!16.76!ZNF121;;chr8:146052918..146052975,+!p1@ZNF7!0.22!16.18!ZNF7;;chr19:56092195..56092248,-!p1@ZNF579!0.22!15.31!ZNF579;;chr7:28725740..28725778,+!p1@CREB5!0.22!12.71!CREB5;;chr10:76586348..76586366,+!p1@KAT6B!0.22!10.69!KAT6B;;chr8:145980808..145980922,-!p1@ZNF251!0.22!10.11!ZNF251;;chr21:27107259..27107299,+!p1@GABPA!0.22!8.09!GABPA;;chr3:23986824..23986848,+!p2@NR1D2!0.22!7.80!NR1D2;;chr2:95831389..95831432,-!p1@ZNF514!0.22!5.78!ZNF514;;chr7:21467674..21467727,+!p1@SP4!0.22!5.20!SP4;;chr19:53030906..53030952,+!p1@ZNF808!0.22!4.91!ZNF808;;chr19:9649304..9649326,-!p2@ZNF426!0.22!4.91!ZNF426;;chr7:99156145..99156207,+!p5@ZNF655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| ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10413-106B8 | |id=FF:10413-106B8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100711 | |is_a=EFO:0002091;;FF:0000210;;FF:0100711 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10731 | |library_id=CNhs10731 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs10731 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10413 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10413 | |||
|name=glioma cell line:GI-1 | |name=glioma cell line:GI-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10731,LSID691,release008,COMPLETED | |profile_hcage=CNhs10731,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
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|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58007627964;bHLH_family:1.0245002728;HSF1,2:0.98668410731;GZF1:0.969708444572;RXR{A,B,G}:0.950545164449;PAX4:0.950043194185;NFY{A,B,C}:0.925198241649;NFIX:0.916060504273;TOPORS:0.894700061811;EN1,2:0.888695275885;ELK1,4_GABP{A,B1}:0.816457901734;HOX{A5,B5}:0.805087433072;GFI1:0.77300668311;ZNF143:0.764453805036;AHR_ARNT_ARNT2:0.745794212975;POU6F1:0.729276163404;NRF1:0.727298545332;NKX6-1,2:0.713151823803;SOX17:0.688655480606;ZNF384:0.686265039629;TLX1..3_NFIC{dimer}:0.667475965097;E2F1..5:0.662852068764;SREBF1,2:0.651503681943;LHX3,4:0.646293663262;PITX1..3:0.605904338514;HAND1,2:0.596920708146;YY1:0.595299606675;HBP1_HMGB_SSRP1_UBTF:0.547419759469;ONECUT1,2:0.544492898778;FOXD3:0.51933656157;MAFB:0.51883395245;SOX2:0.501840395131;MZF1:0.497420431007;CREB1:0.490108697806;TFAP2B:0.488199906361;PAX1,9:0.481984182363;ARID5B:0.465661544148;HOXA9_MEIS1:0.439624268464;ZNF238:0.434063503051;PAX5:0.420261914333;PATZ1:0.41701982452;GATA4:0.401627251044;MAZ:0.397132225566;NKX3-1:0.385457196025;TBX4,5:0.384289571744;ZIC1..3:0.382448289523;GTF2I:0.380741135759;CUX2:0.376503498031;RFX1:0.358560552091;CDX1,2,4:0.350221175991;BACH2:0.339667307541;EVI1:0.335372184469;PDX1:0.334749235719;FOXQ1:0.33388114755;HLF:0.326181410544;VSX1,2:0.311690074614;CRX:0.263613872059;NR3C1:0.262198060775;AIRE:0.246052179192;NKX3-2:0.245912893796;PRRX1,2:0.242659836474;FOSL2:0.236436800513;MYB:0.23110905671;ZBTB6:0.221108069004;TEAD1:0.220359003191;MYFfamily:0.213002090245;RXRA_VDR{dimer}:0.209904076476;SMAD1..7,9:0.193855771291;RREB1:0.188066316076;HMGA1,2:0.185888185898;ESRRA:0.179268866712;POU1F1:0.170926533243;PRDM1:0.166067128188;NFE2:0.15255570889;ATF5_CREB3:0.148423442099;TFDP1:0.141789519399;FOXM1:0.135436829818;CDC5L:0.13442594119;ZFP161:0.13337972705;IKZF1:0.124762129803;ATF4:0.121392832514;NFE2L2:0.107207554451;BREu{core}:0.106549093166;PBX1:0.102648566031;SRF:0.100417585297;FOXP1:0.0798910084014;NR1H4:0.0700637140046;GATA6:0.0447883013118;RUNX1..3:0.042386864958;RFX2..5_RFXANK_RFXAP:0.0394430392694;ADNP_IRX_SIX_ZHX:0.0321282420821;GTF2A1,2:0.0318972350478;ZBTB16:0.0205299782694;MYBL2:0.0184974884228;TAL1_TCF{3,4,12}:0.00603272583401;TFAP4:0.000983451711223;ELF1,2,4:-0.00432009623008;JUN:-0.00521766625633;FOXP3:-0.00684510962584;XCPE1{core}:-0.0112403589558;NFIL3:-0.012812236273;TFAP2{A,C}:-0.0139533864022;CEBPA,B_DDIT3:-0.0178645412669;ZNF423:-0.0314419968191;MEF2{A,B,C,D}:-0.0342871516294;HNF1A:-0.038699384317;FOS_FOS{B,L1}_JUN{B,D}:-0.0420183105488;NFATC1..3:-0.0456956509363;T:-0.0509256805424;RORA:-0.0688000548516;LEF1_TCF7_TCF7L1,2:-0.0709056463336;PAX3,7:-0.0722871261496;UFEwm:-0.0989744540969;SOX{8,9,10}:-0.103651001901;TFCP2:-0.124543061422;HOX{A4,D4}:-0.134188242395;FOXA2:-0.13459399137;RBPJ:-0.16393611846;BPTF:-0.167573075151;IRF7:-0.167689280215;XBP1:-0.170496946759;HIF1A:-0.17833333396;KLF4:-0.183281465236;PAX8:-0.19005012972;HMX1:-0.194356001153;EGR1..3:-0.196184150185;GFI1B:-0.19798994927;HNF4A_NR2F1,2:-0.200243599203;SPZ1:-0.2077305145;TEF:-0.209787517049;EBF1:-0.215154811895;REST:-0.224233838622;NKX2-1,4:-0.228075986111;ATF6:-0.242861728094;ESR1:-0.257454542566;STAT1,3:-0.265151763441;NFE2L1:-0.269114653176;PAX2:-0.269269210921;TLX2:-0.276824002438;SP1:-0.278680281164;FOX{D1,D2}:-0.288482046116;MTE{core}:-0.289391867744;HIC1:-0.29130475141;FOX{F1,F2,J1}:-0.295899880164;IRF1,2:-0.297953333918;NFKB1_REL_RELA:-0.30011905656;FOXN1:-0.333769556393;OCT4_SOX2{dimer}:-0.340122330841;NR6A1:-0.353794605741;DMAP1_NCOR{1,2}_SMARC:-0.368344861539;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368581955843;NANOG:-0.383464678935;TBP:-0.389859114665;TP53:-0.394225537118;NKX2-2,8:-0.401092842561;LMO2:-0.413752167933;MED-1{core}:-0.413826303726;IKZF2:-0.414832854124;NHLH1,2:-0.433177502141;POU3F1..4:-0.434686071893;ALX4:-0.450440230321;DBP:-0.47061368742;NKX2-3_NKX2-5:-0.473391289221;SPIB:-0.475917478212;MYOD1:-0.482323075736;ATF2:-0.500062483376;FOX{I1,J2}:-0.502454011631;SPI1:-0.511480773203;STAT2,4,6:-0.515076050892;MTF1:-0.544979712573;HES1:-0.555232278736;POU5F1:-0.580808599796;NR5A1,2:-0.586776988024;ETS1,2:-0.608717993869;SNAI1..3:-0.615990193532;ZNF148:-0.640720897951;GLI1..3:-0.642864268572;GCM1,2:-0.647258276763;SOX5:-0.665294915975;PPARG:-0.704722763059;ALX1:-0.725924127972;ZEB1:-0.763655843157;EP300:-0.766746252279;NANOG{mouse}:-0.7882971492;AR:-0.789989173971;TGIF1:-0.860504568575;FOXO1,3,4:-0.909853091812;STAT5{A,B}:-0.94267440659;HOX{A6,A7,B6,B7}:-0.962443477229;PAX6:-1.23341566523;POU2F1..3:-1.5675776398;FOXL1:-1.62787901201 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58007627964;bHLH_family:1.0245002728;HSF1,2:0.98668410731;GZF1:0.969708444572;RXR{A,B,G}:0.950545164449;PAX4:0.950043194185;NFY{A,B,C}:0.925198241649;NFIX:0.916060504273;TOPORS:0.894700061811;EN1,2:0.888695275885;ELK1,4_GABP{A,B1}:0.816457901734;HOX{A5,B5}:0.805087433072;GFI1:0.77300668311;ZNF143:0.764453805036;AHR_ARNT_ARNT2:0.745794212975;POU6F1:0.729276163404;NRF1:0.727298545332;NKX6-1,2:0.713151823803;SOX17:0.688655480606;ZNF384:0.686265039629;TLX1..3_NFIC{dimer}:0.667475965097;E2F1..5:0.662852068764;SREBF1,2:0.651503681943;LHX3,4:0.646293663262;PITX1..3:0.605904338514;HAND1,2:0.596920708146;YY1:0.595299606675;HBP1_HMGB_SSRP1_UBTF:0.547419759469;ONECUT1,2:0.544492898778;FOXD3:0.51933656157;MAFB:0.51883395245;SOX2:0.501840395131;MZF1:0.497420431007;CREB1:0.490108697806;TFAP2B:0.488199906361;PAX1,9:0.481984182363;ARID5B:0.465661544148;HOXA9_MEIS1:0.439624268464;ZNF238:0.434063503051;PAX5:0.420261914333;PATZ1:0.41701982452;GATA4:0.401627251044;MAZ:0.397132225566;NKX3-1:0.385457196025;TBX4,5:0.384289571744;ZIC1..3:0.382448289523;GTF2I:0.380741135759;CUX2:0.376503498031;RFX1:0.358560552091;CDX1,2,4:0.350221175991;BACH2:0.339667307541;EVI1:0.335372184469;PDX1:0.334749235719;FOXQ1:0.33388114755;HLF:0.326181410544;VSX1,2:0.311690074614;CRX:0.263613872059;NR3C1:0.262198060775;AIRE:0.246052179192;NKX3-2:0.245912893796;PRRX1,2:0.242659836474;FOSL2:0.236436800513;MYB:0.23110905671;ZBTB6:0.221108069004;TEAD1:0.220359003191;MYFfamily:0.213002090245;RXRA_VDR{dimer}:0.209904076476;SMAD1..7,9:0.193855771291;RREB1:0.188066316076;HMGA1,2:0.185888185898;ESRRA:0.179268866712;POU1F1:0.170926533243;PRDM1:0.166067128188;NFE2:0.15255570889;ATF5_CREB3:0.148423442099;TFDP1:0.141789519399;FOXM1:0.135436829818;CDC5L:0.13442594119;ZFP161:0.13337972705;IKZF1:0.124762129803;ATF4:0.121392832514;NFE2L2:0.107207554451;BREu{core}:0.106549093166;PBX1:0.102648566031;SRF:0.100417585297;FOXP1:0.0798910084014;NR1H4:0.0700637140046;GATA6:0.0447883013118;RUNX1..3:0.042386864958;RFX2..5_RFXANK_RFXAP:0.0394430392694;ADNP_IRX_SIX_ZHX:0.0321282420821;GTF2A1,2:0.0318972350478;ZBTB16:0.0205299782694;MYBL2:0.0184974884228;TAL1_TCF{3,4,12}:0.00603272583401;TFAP4:0.000983451711223;ELF1,2,4:-0.00432009623008;JUN:-0.00521766625633;FOXP3:-0.00684510962584;XCPE1{core}:-0.0112403589558;NFIL3:-0.012812236273;TFAP2{A,C}:-0.0139533864022;CEBPA,B_DDIT3:-0.0178645412669;ZNF423:-0.0314419968191;MEF2{A,B,C,D}:-0.0342871516294;HNF1A:-0.038699384317;FOS_FOS{B,L1}_JUN{B,D}:-0.0420183105488;NFATC1..3:-0.0456956509363;T:-0.0509256805424;RORA:-0.0688000548516;LEF1_TCF7_TCF7L1,2:-0.0709056463336;PAX3,7:-0.0722871261496;UFEwm:-0.0989744540969;SOX{8,9,10}:-0.103651001901;TFCP2:-0.124543061422;HOX{A4,D4}:-0.134188242395;FOXA2:-0.13459399137;RBPJ:-0.16393611846;BPTF:-0.167573075151;IRF7:-0.167689280215;XBP1:-0.170496946759;HIF1A:-0.17833333396;KLF4:-0.183281465236;PAX8:-0.19005012972;HMX1:-0.194356001153;EGR1..3:-0.196184150185;GFI1B:-0.19798994927;HNF4A_NR2F1,2:-0.200243599203;SPZ1:-0.2077305145;TEF:-0.209787517049;EBF1:-0.215154811895;REST:-0.224233838622;NKX2-1,4:-0.228075986111;ATF6:-0.242861728094;ESR1:-0.257454542566;STAT1,3:-0.265151763441;NFE2L1:-0.269114653176;PAX2:-0.269269210921;TLX2:-0.276824002438;SP1:-0.278680281164;FOX{D1,D2}:-0.288482046116;MTE{core}:-0.289391867744;HIC1:-0.29130475141;FOX{F1,F2,J1}:-0.295899880164;IRF1,2:-0.297953333918;NFKB1_REL_RELA:-0.30011905656;FOXN1:-0.333769556393;OCT4_SOX2{dimer}:-0.340122330841;NR6A1:-0.353794605741;DMAP1_NCOR{1,2}_SMARC:-0.368344861539;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368581955843;NANOG:-0.383464678935;TBP:-0.389859114665;TP53:-0.394225537118;NKX2-2,8:-0.401092842561;LMO2:-0.413752167933;MED-1{core}:-0.413826303726;IKZF2:-0.414832854124;NHLH1,2:-0.433177502141;POU3F1..4:-0.434686071893;ALX4:-0.450440230321;DBP:-0.47061368742;NKX2-3_NKX2-5:-0.473391289221;SPIB:-0.475917478212;MYOD1:-0.482323075736;ATF2:-0.500062483376;FOX{I1,J2}:-0.502454011631;SPI1:-0.511480773203;STAT2,4,6:-0.515076050892;MTF1:-0.544979712573;HES1:-0.555232278736;POU5F1:-0.580808599796;NR5A1,2:-0.586776988024;ETS1,2:-0.608717993869;SNAI1..3:-0.615990193532;ZNF148:-0.640720897951;GLI1..3:-0.642864268572;GCM1,2:-0.647258276763;SOX5:-0.665294915975;PPARG:-0.704722763059;ALX1:-0.725924127972;ZEB1:-0.763655843157;EP300:-0.766746252279;NANOG{mouse}:-0.7882971492;AR:-0.789989173971;TGIF1:-0.860504568575;FOXO1,3,4:-0.909853091812;STAT5{A,B}:-0.94267440659;HOX{A6,A7,B6,B7}:-0.962443477229;PAX6:-1.23341566523;POU2F1..3:-1.5675776398;FOXL1:-1.62787901201 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10413-106B8;search_select_hide=table117:FF:10413-106B8 | |||
}} | }} |
Latest revision as of 13:59, 3 June 2020
Name: | glioma cell line:GI-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10731 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10731
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10731
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.453 |
10 | 10 | 0.74 |
100 | 100 | 0.965 |
101 | 101 | 0.623 |
102 | 102 | 0.624 |
103 | 103 | 0.252 |
104 | 104 | 0.394 |
105 | 105 | 0.634 |
106 | 106 | 2.36851e-4 |
107 | 107 | 0.193 |
108 | 108 | 0.497 |
109 | 109 | 0.109 |
11 | 11 | 0.312 |
110 | 110 | 0.589 |
111 | 111 | 0.588 |
112 | 112 | 0.0645 |
113 | 113 | 0.071 |
114 | 114 | 0.0179 |
115 | 115 | 0.631 |
116 | 116 | 0.805 |
117 | 117 | 0.389 |
118 | 118 | 0.906 |
119 | 119 | 0.0399 |
12 | 12 | 0.312 |
120 | 120 | 0.799 |
121 | 121 | 0.929 |
122 | 122 | 0.169 |
123 | 123 | 0.396 |
124 | 124 | 0.925 |
125 | 125 | 0.401 |
126 | 126 | 0.217 |
127 | 127 | 0.66 |
128 | 128 | 0.0139 |
129 | 129 | 0.0148 |
13 | 13 | 0.894 |
130 | 130 | 0.148 |
131 | 131 | 0.369 |
132 | 132 | 0.207 |
133 | 133 | 0.0874 |
134 | 134 | 0.988 |
135 | 135 | 0.134 |
136 | 136 | 0.351 |
137 | 137 | 0.534 |
138 | 138 | 0.167 |
139 | 139 | 0.0595 |
14 | 14 | 0.997 |
140 | 140 | 0.977 |
141 | 141 | 0.351 |
142 | 142 | 0.997 |
143 | 143 | 0.0112 |
144 | 144 | 0.891 |
145 | 145 | 0.219 |
146 | 146 | 0.564 |
147 | 147 | 0.858 |
148 | 148 | 0.0898 |
149 | 149 | 0.18 |
15 | 15 | 0.294 |
150 | 150 | 0.562 |
151 | 151 | 0.551 |
152 | 152 | 0.138 |
153 | 153 | 0.997 |
154 | 154 | 0.808 |
155 | 155 | 0.668 |
156 | 156 | 0.739 |
157 | 157 | 0.712 |
158 | 158 | 0.316 |
159 | 159 | 0.614 |
16 | 16 | 0.263 |
160 | 160 | 0.124 |
161 | 161 | 0.214 |
162 | 162 | 0.492 |
163 | 163 | 0.956 |
164 | 164 | 0.417 |
165 | 165 | 0.0136 |
166 | 166 | 0.753 |
167 | 167 | 0.248 |
168 | 168 | 0.933 |
169 | 169 | 0.209 |
17 | 17 | 0.492 |
18 | 18 | 0.75 |
19 | 19 | 0.237 |
2 | 2 | 0.441 |
20 | 20 | 0.811 |
21 | 21 | 0.883 |
22 | 22 | 0.435 |
23 | 23 | 0.0164 |
24 | 24 | 0.99 |
25 | 25 | 0.128 |
26 | 26 | 0.33 |
27 | 27 | 0.211 |
28 | 28 | 0.897 |
29 | 29 | 0.985 |
3 | 3 | 0.714 |
30 | 30 | 0.67 |
31 | 31 | 0.224 |
32 | 32 | 0.153 |
33 | 33 | 0.432 |
34 | 34 | 0.418 |
35 | 35 | 0.803 |
36 | 36 | 0.102 |
37 | 37 | 0.706 |
38 | 38 | 0.125 |
39 | 39 | 0.429 |
4 | 4 | 0.905 |
40 | 40 | 0.139 |
41 | 41 | 0.0509 |
42 | 42 | 0.879 |
43 | 43 | 0.104 |
44 | 44 | 0.191 |
45 | 45 | 0.352 |
46 | 46 | 0.217 |
47 | 47 | 0.995 |
48 | 48 | 0.331 |
49 | 49 | 0.188 |
5 | 5 | 0.37 |
50 | 50 | 0.878 |
51 | 51 | 0.817 |
52 | 52 | 0.0776 |
53 | 53 | 0.757 |
54 | 54 | 0.616 |
55 | 55 | 0.945 |
56 | 56 | 0.882 |
57 | 57 | 0.715 |
58 | 58 | 0.0648 |
59 | 59 | 0.0436 |
6 | 6 | 0.348 |
60 | 60 | 0.0263 |
61 | 61 | 0.857 |
62 | 62 | 0.00157 |
63 | 63 | 0.236 |
64 | 64 | 0.901 |
65 | 65 | 0.0209 |
66 | 66 | 0.0555 |
67 | 67 | 0.84 |
68 | 68 | 0.832 |
69 | 69 | 0.442 |
7 | 7 | 0.229 |
70 | 70 | 0.02 |
71 | 71 | 0.691 |
72 | 72 | 0.576 |
73 | 73 | 0.383 |
74 | 74 | 0.66 |
75 | 75 | 0.923 |
76 | 76 | 0.853 |
77 | 77 | 0.486 |
78 | 78 | 0.0709 |
79 | 79 | 0.368 |
8 | 8 | 0.383 |
80 | 80 | 0.528 |
81 | 81 | 0.631 |
82 | 82 | 0.0193 |
83 | 83 | 0.852 |
84 | 84 | 0.704 |
85 | 85 | 0.115 |
86 | 86 | 0.91 |
87 | 87 | 0.338 |
88 | 88 | 0.78 |
89 | 89 | 0.0608 |
9 | 9 | 0.665 |
90 | 90 | 0.327 |
91 | 91 | 0.364 |
92 | 92 | 0.0759 |
93 | 93 | 0.205 |
94 | 94 | 0.143 |
95 | 95 | 0.439 |
96 | 96 | 0.198 |
97 | 97 | 0.234 |
98 | 98 | 0.0136 |
99 | 99 | 0.909 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10731
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100711 glioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)