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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005348
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|accession_numbers=CAGE;DRX007830;DRR008702;DRZ000127;DRZ001512;DRZ011477;DRZ012862
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000126,CL:0000127,CL:0000128,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371,CL:0002453
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|ancestors_in_disease_facet=DOID:0050686,DOID:14566,DOID:162,DOID:3093,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0100101
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:139587228..139587234,-!p1@SOX3!2.43!269.68!SOX3;;chr10:64576105..64576133,-!p1@EGR2!2.14!271.11!EGR2;;chr2:119605214..119605230,-!p1@EN1!2.08!118.63!EN1;;chr11:61520075..61520136,+!p1@C11orf9!1.90!161.28!C11orf9;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.59!38.35!EN2;;chr5:72744594..72744609,-!p1@FOXD1!1.51!137.45!FOXD1;;chr16:86544113..86544145,+!p1@FOXF1!1.50!37.94!FOXF1;;chr10:64134120..64134183,+!p1@ZNF365!1.50!36.82!ZNF365;;chr3:181429704..181429722,+!p1@SOX2!1.35!21.58!SOX2;;chr12:27485762..27485776,+!p3@ARNTL2!1.33!54.20!ARNTL2;;chr7:27196267..27196311,-!p1@HOXA7!1.33!20.25!HOXA7;;chr10:63809106..63809127,+!p1@ARID5B!1.31!254.24!ARID5B;;chr14:29235961..29236008,+!p1@FOXG1!1.31!19.23!FOXG1;;chr6:45296048..45296082,+!p1@RUNX2!1.30!21.89!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!1.28!25.98!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.24!16.57!HOXB9;;chr6:99282438..99282457,+!p2@POU3F2!1.24!16.57!POU3F2;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.65!HOXA3;;chr10:64134045..64134083,+!p3@ZNF365!1.21!15.34!ZNF365;;chr6:99282475..99282501,+!p1@POU3F2!1.20!14.83!POU3F2;;chr11:34654104..34654118,+!p5@EHF!1.18!14.01!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.16!13.60!ZBED1;;chr3:181429741..181429767,+!p2@SOX2!1.15!13.19!SOX2;;chr14:36989940..36989957,-!p2@NKX2-1!1.15!13.19!NKX2-1;;chr11:31832658..31832681,-!p1@PAX6!1.11!11.86!PAX6;;chr14:29236269..29236285,+!p3@FOXG1!1.10!11.66!FOXG1;;chr4:111558135..111558198,-!p2@PITX2!1.10!11.56!PITX2;;chr2:176969228..176969260,+!p1@HOXD11!1.09!11.35!HOXD11;;chr10:63809134..63809145,+!p6@ARID5B!1.08!25.67!ARID5B;;chr1:214161272..214161322,+!p1@PROX1!1.08!15.54!PROX1;;chr2:119604456..119604501,-!p2@EN1!1.08!10.94!EN1;;chr1:23696308..23696339,-!p2@ZNF436!1.07!22.91!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.07!11.97!RORB;;chr6:99283040..99283063,+!p5@POU3F2!1.05!10.23!POU3F2;;chr5:72744445..72744466,-!p2@FOXD1!1.03!16.26!FOXD1;;chr5:134369905..134369972,-!p1@PITX1!1.01!14.42!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.01!11.76!TFAP2C;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.20!HOXB8;;chr12:27485785..27485816,+!p1@ARNTL2!1.00!63.71!ARNTL2;;chr2:223163706..223163730,-!p1@PAX3!1.00!9.10!PAX3;;chr10:64133910..64133925,+!p5@ZNF365!1.00!8.90!ZNF365;;chr6:99282592..99282616,+!p3@POU3F2!0.99!8.80!POU3F2;;chr2:74741569..74741620,+!p1@TLX2!0.98!8.49!TLX2;;chr19:45971246..45971265,+!p1@FOSB!0.97!159.54!FOSB;;chr3:147111198..147111225,+!p4@ZIC1!0.97!8.39!ZIC1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.97!8.39!LHX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.28!ZFHX4;;chr1:23696348..23696363,-!p4@ZNF436!0.96!9.31!ZNF436;;chr19:47523058..47523114,+!p1@NPAS1!0.96!8.08!NPAS1;;chr10:63809013..63809041,+!p3@ARID5B!0.95!45.00!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.46!ARID5B;;chr12:27485823..27485868,+!p2@ARNTL2!0.95!32.83!ARNTL2;;chr1:23696448..23696453,-!p5@ZNF436!0.94!9.51!ZNF436;;chr11:32457075..32457095,-!p1@WT1!0.94!7.67!WT1;;chr9:77112225..77112238,+!p2@RORB!0.94!7.67!RORB;;chr2:119605253..119605264,-!p5@EN1!0.94!7.67!EN1;;chr14:75745523..75745537,+!p1@FOS!0.93!933.00!FOS;;chr8:23540441..23540466,-!p1@NKX3-1!0.93!15.44!NKX3-1;;chr6:99282570..99282591,+!p4@POU3F2!0.93!7.57!POU3F2;;chr10:64133934..64133954,+!p6@ZNF365!0.93!7.57!ZNF365;;chr16:51185172..51185197,-!p1@SALL1!0.93!7.47!SALL1;;chr7:28725740..28725778,+!p1@CREB5!0.92!68.72!CREB5;;chr12:77459306..77459365,-!p1@E2F7!0.91!93.88!E2F7;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.56!TWIST1;;chr12:24715376..24715432,-!p1@SOX5!0.91!9.20!SOX5;;chr9:4300050..4300118,-!p1@GLIS3!0.90!47.15!GLIS3;;chr7:28725715..28725727,+!p3@CREB5!0.90!8.39!CREB5;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!8.08!TFAP2A;;chr7:27169801..27169844,-!p2@HOXA4!0.90!6.95!HOXA4;;chr14:29236301..29236317,+!p5@FOXG1!0.90!6.95!FOXG1;;chr9:109625401..109625458,+!p1@ZNF462!0.89!18.72!ZNF462;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.61!HOXB7;;chr10:64133862..64133884,+!p4@ZNF365!0.89!6.85!ZNF365;;chr12:54393880..54393962,+!p1@HOXC9!0.89!6.85!HOXC9;;chr11:16629261..16629284,-!p1@SOX6!0.89!6.75!SOX6;;chr14:29234581..29234601,+!p2@FOXG1!0.89!6.75!FOXG1;;chr12:115121962..115121987,-!p1@TBX3!0.88!58.09!TBX3;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.75!RUNX1;;chr5:72744562..72744573,-!p3@FOXD1!0.88!8.28!FOXD1;;chrX:101975643..101975683,+!p1@BHLHB9!0.87!14.73!BHLHB9;;chr20:2673383..2673441,+!p1@EBF4!0.87!10.43!EBF4;;chr10:64576035..64576046,-!p2@EGR2!0.87!6.34!EGR2;;chr1:204042233..204042249,+!p1@SOX13!0.86!41.93!SOX13;;chr14:36989913..36989931,-!p6@NKX2-1!0.86!6.24!NKX2-1;;chr7:28448965..28448994,+!p2@CREB5!0.84!22.19!CREB5;;chr22:41697497..41697515,+!p2@ZC3H7B!0.84!17.08!ZC3H7B;;chr1:158969752..158969780,+!p6@IFI16!0.84!10.64!IFI16;;chr8:60031682..60031710,-!p2@TOX!0.84!9.82!TOX;;chr4:57522166..57522260,-!p2@HOPX!0.84!6.95!HOPX;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.60!CREB3L1;;chr8:22550982..22550999,-!p1@EGR3!0.83!17.28!EGR3;;chr8:60031619..60031676,-!p1@TOX!0.83!13.09!TOX;;chr2:7112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|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316
|fonse_cell_line=FF:0100255
|fonse_cell_line=FF:0100255
|fonse_cell_line_closure=FF:0100255
|fonse_cell_line_closure=FF:0100255
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg38.nobarcode.ctss.bed.gz
|id=FF:10425-106D2
|id=FF:10425-106D2
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100101
|is_a=EFO:0002091;;FF:0000210;;FF:0100101
|is_obsolete=
|library_id=CNhs10742
|library_id_phase_based=2:CNhs10742
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10425
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10425
|name=astrocytoma cell line:TM-31
|name=astrocytoma cell line:TM-31
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10742,LSID692,release008,COMPLETED
|profile_hcage=CNhs10742,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_box=106
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=18.946
|rna_weight_ug=18.946
|sample_age=42
|sample_age=42
|sample_category=cell lines
|sample_cell_catalog=RCB1731
|sample_cell_catalog=RCB1731
|sample_cell_line=TM-31
|sample_cell_line=TM-31
Line 69: Line 91:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.06479309201209e-255!GO:0043226;organelle;1.23364163213604e-213!GO:0043229;intracellular organelle;3.34375192668335e-213!GO:0043231;intracellular membrane-bound organelle;1.46191709651048e-206!GO:0043227;membrane-bound organelle;2.55862618795911e-206!GO:0005737;cytoplasm;5.29207347163844e-174!GO:0044422;organelle part;1.09813093182015e-146!GO:0044446;intracellular organelle part;3.16670185053374e-145!GO:0044444;cytoplasmic part;1.69360989490806e-118!GO:0032991;macromolecular complex;1.52948278849785e-100!GO:0005634;nucleus;6.61322504478478e-95!GO:0044238;primary metabolic process;2.31119899037167e-90!GO:0044237;cellular metabolic process;9.87208020991059e-89!GO:0043170;macromolecule metabolic process;4.35278418038619e-88!GO:0030529;ribonucleoprotein complex;1.71878969602941e-81!GO:0044428;nuclear part;1.8130165737514e-77!GO:0005515;protein binding;2.17646474487393e-75!GO:0003723;RNA binding;1.31578840105257e-69!GO:0043233;organelle lumen;1.31578840105257e-69!GO:0031974;membrane-enclosed lumen;1.31578840105257e-69!GO:0043283;biopolymer metabolic process;1.11154070609046e-57!GO:0005739;mitochondrion;1.51352995449133e-55!GO:0016043;cellular component organization and biogenesis;4.43178202996929e-55!GO:0043234;protein complex;8.81463602625732e-52!GO:0006396;RNA processing;1.55707205568607e-49!GO:0010467;gene expression;2.65040093704516e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.94633266842057e-47!GO:0031981;nuclear lumen;9.63690194847356e-47!GO:0031090;organelle membrane;9.94416305531449e-47!GO:0005840;ribosome;1.38888079617868e-45!GO:0033036;macromolecule localization;2.34487835532963e-45!GO:0015031;protein transport;1.01618805630395e-44!GO:0006412;translation;8.21257581542454e-43!GO:0019538;protein metabolic process;4.91181385672033e-42!GO:0043228;non-membrane-bound organelle;1.96254954254704e-41!GO:0043232;intracellular non-membrane-bound organelle;1.96254954254704e-41!GO:0008104;protein localization;8.79754732914079e-41!GO:0016071;mRNA metabolic process;1.11624318063598e-40!GO:0045184;establishment of protein localization;8.52880855510521e-40!GO:0003735;structural constituent of ribosome;1.06719454933001e-39!GO:0008380;RNA splicing;1.2109962668341e-38!GO:0046907;intracellular transport;3.81843159898379e-38!GO:0044260;cellular macromolecule metabolic process;8.98088749969476e-38!GO:0044267;cellular protein metabolic process;1.23473431899343e-37!GO:0044429;mitochondrial part;1.68582459655606e-37!GO:0006996;organelle organization and biogenesis;3.70754065907777e-36!GO:0031967;organelle envelope;8.81075606939858e-36!GO:0006397;mRNA processing;1.00901228486397e-35!GO:0031975;envelope;1.23231693127535e-35!GO:0006259;DNA metabolic process;6.75702886460589e-33!GO:0009059;macromolecule biosynthetic process;7.61419489798378e-33!GO:0003676;nucleic acid binding;9.42906404168649e-33!GO:0009058;biosynthetic process;1.64526461535792e-32!GO:0033279;ribosomal subunit;1.98251839119411e-32!GO:0065003;macromolecular complex assembly;4.46561634378927e-32!GO:0005829;cytosol;3.92570125719198e-31!GO:0005654;nucleoplasm;2.00532329390385e-30!GO:0044249;cellular biosynthetic process;4.99098725353321e-30!GO:0006886;intracellular protein transport;3.95748915605446e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.84771015145788e-27!GO:0022607;cellular component assembly;6.32375777377285e-27!GO:0005681;spliceosome;6.42714081826195e-27!GO:0007049;cell cycle;2.25080564816265e-26!GO:0016070;RNA metabolic process;6.41566418371825e-26!GO:0044451;nucleoplasm part;1.47679661712926e-25!GO:0051641;cellular localization;5.66873287836801e-24!GO:0000166;nucleotide binding;5.66873287836801e-24!GO:0051649;establishment of cellular localization;7.16235551038593e-24!GO:0005740;mitochondrial envelope;8.36468842380411e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.79485050326245e-23!GO:0019866;organelle inner membrane;4.5882003446268e-23!GO:0031966;mitochondrial membrane;4.59942524423122e-23!GO:0016462;pyrophosphatase activity;1.80246952416747e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.41651713415256e-22!GO:0017111;nucleoside-triphosphatase activity;3.37461374453601e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.70961361072906e-22!GO:0005743;mitochondrial inner membrane;6.98220805817468e-21!GO:0000278;mitotic cell cycle;1.5501508869442e-20!GO:0012505;endomembrane system;3.4827383083399e-20!GO:0005694;chromosome;1.54321417511329e-19!GO:0022402;cell cycle process;1.65299160402967e-19!GO:0006119;oxidative phosphorylation;4.93067195051252e-19!GO:0044445;cytosolic part;7.4528174836763e-19!GO:0016874;ligase activity;9.89047724772602e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.74873956801896e-18!GO:0006512;ubiquitin cycle;5.62021421052645e-18!GO:0006511;ubiquitin-dependent protein catabolic process;6.99992053374371e-18!GO:0006974;response to DNA damage stimulus;7.31713081030722e-18!GO:0019941;modification-dependent protein catabolic process;8.77322794752294e-18!GO:0043632;modification-dependent macromolecule catabolic process;8.77322794752294e-18!GO:0044265;cellular macromolecule catabolic process;1.01703204558186e-17!GO:0015935;small ribosomal subunit;1.03545589598639e-17!GO:0044257;cellular protein catabolic process;1.04610883385564e-17!GO:0032553;ribonucleotide binding;1.05043181792326e-17!GO:0032555;purine ribonucleotide binding;1.05043181792326e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.06649609288349e-17!GO:0022618;protein-RNA complex assembly;4.78591311343777e-17!GO:0005783;endoplasmic reticulum;4.87240323684164e-17!GO:0008134;transcription factor binding;5.4765543380565e-17!GO:0044455;mitochondrial membrane part;5.78960303480029e-17!GO:0044427;chromosomal part;7.56325410463793e-17!GO:0017076;purine nucleotide binding;1.07196144370306e-16!GO:0000087;M phase of mitotic cell cycle;1.46911598150042e-16!GO:0006457;protein folding;1.76645614462989e-16!GO:0005794;Golgi apparatus;1.79561796603121e-16!GO:0007067;mitosis;2.0757437683631e-16!GO:0043285;biopolymer catabolic process;2.33368027620616e-16!GO:0005730;nucleolus;3.2481424887673e-16!GO:0031980;mitochondrial lumen;4.66588887717606e-16!GO:0005759;mitochondrial matrix;4.66588887717606e-16!GO:0051301;cell division;5.30793368965265e-16!GO:0015934;large ribosomal subunit;8.65630805367197e-16!GO:0051276;chromosome organization and biogenesis;1.56041000663911e-15!GO:0006281;DNA repair;1.78674747986895e-15!GO:0048770;pigment granule;4.12793160837988e-15!GO:0042470;melanosome;4.12793160837988e-15!GO:0030163;protein catabolic process;6.64818534880904e-15!GO:0009057;macromolecule catabolic process;8.31983861256851e-15!GO:0048193;Golgi vesicle transport;9.32299468489765e-15!GO:0006605;protein targeting;1.73976932055406e-14!GO:0008135;translation factor activity, nucleic acid binding;3.21282017064116e-14!GO:0022403;cell cycle phase;3.72786534380611e-14!GO:0044248;cellular catabolic process;3.80544800447749e-14!GO:0044432;endoplasmic reticulum part;4.80186814577296e-14!GO:0005524;ATP binding;5.20225925018677e-14!GO:0043412;biopolymer modification;5.850253951415e-14!GO:0050794;regulation of cellular process;1.38364268083068e-13!GO:0005761;mitochondrial ribosome;1.57791225216954e-13!GO:0000313;organellar ribosome;1.57791225216954e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.07491359185732e-13!GO:0006366;transcription from RNA polymerase II promoter;2.07785859276294e-13!GO:0032559;adenyl ribonucleotide binding;2.84620563277403e-13!GO:0031965;nuclear membrane;2.84620563277403e-13!GO:0005746;mitochondrial respiratory chain;3.81476338608814e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.35752779952588e-13!GO:0000375;RNA splicing, via transesterification reactions;5.35752779952588e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.35752779952588e-13!GO:0016192;vesicle-mediated transport;6.75940486252325e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;8.97806474190783e-13!GO:0016887;ATPase activity;1.21472569150374e-12!GO:0005635;nuclear envelope;1.30541174857861e-12!GO:0042623;ATPase activity, coupled;1.57860613548959e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.69641237873722e-12!GO:0003954;NADH dehydrogenase activity;2.69641237873722e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.69641237873722e-12!GO:0051082;unfolded protein binding;2.88377819649501e-12!GO:0030554;adenyl nucleotide binding;3.13949703106367e-12!GO:0000279;M phase;3.13949703106367e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.1923304632002e-12!GO:0006464;protein modification process;3.90152678278485e-12!GO:0006323;DNA packaging;4.30790481597806e-12!GO:0006260;DNA replication;4.67826488080455e-12!GO:0015630;microtubule cytoskeleton;4.93658552039719e-12!GO:0009719;response to endogenous stimulus;6.37504183890073e-12!GO:0044453;nuclear membrane part;7.81787558955333e-12!GO:0004386;helicase activity;1.52239686767271e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.67127982078717e-11!GO:0003712;transcription cofactor activity;1.68449194037996e-11!GO:0016604;nuclear body;2.12240160231215e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23804806299262e-11!GO:0003743;translation initiation factor activity;3.83197441824667e-11!GO:0051186;cofactor metabolic process;3.89729667866325e-11!GO:0051726;regulation of cell cycle;4.20525024746962e-11!GO:0005789;endoplasmic reticulum membrane;4.21503896123683e-11!GO:0042254;ribosome biogenesis and assembly;5.20774836193161e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.76313759064391e-11!GO:0042773;ATP synthesis coupled electron transport;5.76313759064391e-11!GO:0000074;regulation of progression through cell cycle;6.03783831849207e-11!GO:0008639;small protein conjugating enzyme activity;9.53782276798318e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.32890779862044e-10!GO:0045271;respiratory chain complex I;1.32890779862044e-10!GO:0005747;mitochondrial respiratory chain complex I;1.32890779862044e-10!GO:0004842;ubiquitin-protein ligase activity;1.55775598942729e-10!GO:0043687;post-translational protein modification;1.64767396226151e-10!GO:0006913;nucleocytoplasmic transport;1.88983222626988e-10!GO:0006413;translational initiation;2.05975859850768e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.29102346051117e-10!GO:0000785;chromatin;2.37371245054623e-10!GO:0006446;regulation of translational initiation;2.49660456099662e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.09149822384379e-10!GO:0048523;negative regulation of cellular process;3.46941720403422e-10!GO:0051169;nuclear transport;4.03182016175347e-10!GO:0006403;RNA localization;4.31284244773358e-10!GO:0019787;small conjugating protein ligase activity;4.78266200915861e-10!GO:0065004;protein-DNA complex assembly;7.20803801055461e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.41951944045606e-10!GO:0050657;nucleic acid transport;8.60308631337025e-10!GO:0051236;establishment of RNA localization;8.60308631337025e-10!GO:0050658;RNA transport;8.60308631337025e-10!GO:0008026;ATP-dependent helicase activity;1.02673322860592e-09!GO:0016607;nuclear speck;1.58525646016642e-09!GO:0005643;nuclear pore;1.75540754295641e-09!GO:0008565;protein transporter activity;2.87987226884909e-09!GO:0012501;programmed cell death;3.43773738055347e-09!GO:0006333;chromatin assembly or disassembly;3.48627470905276e-09!GO:0016881;acid-amino acid ligase activity;3.57124463110275e-09!GO:0006461;protein complex assembly;4.23891692438897e-09!GO:0005667;transcription factor complex;4.39581355294382e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.77773933203449e-09!GO:0005793;ER-Golgi intermediate compartment;4.93621908111902e-09!GO:0006915;apoptosis;7.22840058714684e-09!GO:0050789;regulation of biological process;7.76458902479568e-09!GO:0006732;coenzyme metabolic process;7.82550325828906e-09!GO:0009259;ribonucleotide metabolic process;1.35971920004095e-08!GO:0003924;GTPase activity;1.55583697349025e-08!GO:0048519;negative regulation of biological process;1.6418470541616e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.90569641653631e-08!GO:0017038;protein import;2.07906705979499e-08!GO:0006163;purine nucleotide metabolic process;3.1106662113203e-08!GO:0065002;intracellular protein transport across a membrane;3.49367853322983e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.51734860122669e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.72369988182286e-08!GO:0005819;spindle;5.01914017915845e-08!GO:0008219;cell death;5.01914017915845e-08!GO:0016265;death;5.01914017915845e-08!GO:0051028;mRNA transport;5.42274169211732e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.92377046078912e-08!GO:0043566;structure-specific DNA binding;1.0646783812956e-07!GO:0019222;regulation of metabolic process;1.20532531703867e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.24350683423237e-07!GO:0005768;endosome;1.27366223098166e-07!GO:0006164;purine nucleotide biosynthetic process;1.45525874439855e-07!GO:0009150;purine ribonucleotide metabolic process;1.50317857624131e-07!GO:0016568;chromatin modification;1.60932489851419e-07!GO:0015986;ATP synthesis coupled proton transport;1.77552893494712e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.77552893494712e-07!GO:0006364;rRNA processing;1.99806315408756e-07!GO:0009260;ribonucleotide biosynthetic process;1.99806315408756e-07!GO:0006399;tRNA metabolic process;2.0595540566242e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.15794996838218e-07!GO:0016564;transcription repressor activity;2.38769792419407e-07!GO:0009056;catabolic process;2.53355828316645e-07!GO:0046930;pore complex;2.62757233452513e-07!GO:0005813;centrosome;3.32786855089018e-07!GO:0016072;rRNA metabolic process;3.39415543901e-07!GO:0031324;negative regulation of cellular metabolic process;3.51769718238507e-07!GO:0003724;RNA helicase activity;3.66277719638e-07!GO:0045333;cellular respiration;3.74258370708736e-07!GO:0009060;aerobic respiration;3.83786762480607e-07!GO:0005525;GTP binding;4.43245415283991e-07!GO:0004298;threonine endopeptidase activity;5.25827424605125e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.17714239197396e-07!GO:0000775;chromosome, pericentric region;6.28951254447928e-07!GO:0009152;purine ribonucleotide biosynthetic process;7.04483600861558e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.57289339939154e-07!GO:0007005;mitochondrion organization and biogenesis;8.2436988999267e-07!GO:0030120;vesicle coat;9.0684483106214e-07!GO:0030662;coated vesicle membrane;9.0684483106214e-07!GO:0009141;nucleoside triphosphate metabolic process;9.57135845554907e-07!GO:0005815;microtubule organizing center;1.02167453697414e-06!GO:0043623;cellular protein complex assembly;1.05116456191441e-06!GO:0005770;late endosome;1.07456562240128e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.10333746132904e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.10333746132904e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.10333746132904e-06!GO:0019829;cation-transporting ATPase activity;1.11669570577127e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.21380923500552e-06!GO:0016563;transcription activator activity;1.27249672905133e-06!GO:0044431;Golgi apparatus part;1.32268409320765e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.39555145791464e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.39555145791464e-06!GO:0046034;ATP metabolic process;1.42992932286261e-06!GO:0043069;negative regulation of programmed cell death;1.45417258067762e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.47647289881189e-06!GO:0032446;protein modification by small protein conjugation;1.50922332921413e-06!GO:0043038;amino acid activation;1.51870970792351e-06!GO:0006418;tRNA aminoacylation for protein translation;1.51870970792351e-06!GO:0043039;tRNA aminoacylation;1.51870970792351e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.53094453846657e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.53094453846657e-06!GO:0000245;spliceosome assembly;1.86526984784503e-06!GO:0006334;nucleosome assembly;1.97096918967691e-06!GO:0016740;transferase activity;2.01587994088511e-06!GO:0007051;spindle organization and biogenesis;2.02822473445317e-06!GO:0003697;single-stranded DNA binding;2.13630392101666e-06!GO:0016567;protein ubiquitination;2.18767047716732e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.18767047716732e-06!GO:0006754;ATP biosynthetic process;2.20110868680599e-06!GO:0006753;nucleoside phosphate metabolic process;2.20110868680599e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.28766573370427e-06!GO:0006099;tricarboxylic acid cycle;2.34155900841381e-06!GO:0046356;acetyl-CoA catabolic process;2.34155900841381e-06!GO:0051246;regulation of protein metabolic process;2.47461273903748e-06!GO:0031252;leading edge;2.48754825483675e-06!GO:0005798;Golgi-associated vesicle;2.49611164406854e-06!GO:0006261;DNA-dependent DNA replication;2.71261469214024e-06!GO:0048475;coated membrane;2.74987882933793e-06!GO:0030117;membrane coat;2.74987882933793e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.84210387726682e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.84210387726682e-06!GO:0009892;negative regulation of metabolic process;2.96245599769347e-06!GO:0043067;regulation of programmed cell death;3.25091045580741e-06!GO:0003714;transcription corepressor activity;3.38664682707055e-06!GO:0006613;cotranslational protein targeting to membrane;3.39529828392463e-06!GO:0043066;negative regulation of apoptosis;3.54262150278533e-06!GO:0009055;electron carrier activity;4.29725159271317e-06!GO:0006752;group transfer coenzyme metabolic process;4.63546243103722e-06!GO:0006084;acetyl-CoA metabolic process;5.02014786113093e-06!GO:0031497;chromatin assembly;5.18036988104417e-06!GO:0042981;regulation of apoptosis;5.66336004912789e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.72499419146604e-06!GO:0045259;proton-transporting ATP synthase complex;7.07410785417595e-06!GO:0031323;regulation of cellular metabolic process;7.3947108323084e-06!GO:0000151;ubiquitin ligase complex;7.46344468318829e-06!GO:0051427;hormone receptor binding;8.03467110589655e-06!GO:0006793;phosphorus metabolic process;9.1683711699148e-06!GO:0006796;phosphate metabolic process;9.1683711699148e-06!GO:0032561;guanyl ribonucleotide binding;9.35667503345083e-06!GO:0019001;guanyl nucleotide binding;9.35667503345083e-06!GO:0016481;negative regulation of transcription;1.05713394765259e-05!GO:0007010;cytoskeleton organization and biogenesis;1.15184242806158e-05!GO:0006606;protein import into nucleus;1.31849792515636e-05!GO:0016779;nucleotidyltransferase activity;1.3752794912987e-05!GO:0031988;membrane-bound vesicle;1.37694158661464e-05!GO:0006916;anti-apoptosis;1.4380753254824e-05!GO:0051187;cofactor catabolic process;1.51513207968811e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.59024569083031e-05!GO:0035257;nuclear hormone receptor binding;1.59024569083031e-05!GO:0044440;endosomal part;1.59559893013118e-05!GO:0010008;endosome membrane;1.59559893013118e-05!GO:0003713;transcription coactivator activity;1.61591201531471e-05!GO:0051188;cofactor biosynthetic process;1.64395751651925e-05!GO:0016787;hydrolase activity;1.77900519290422e-05!GO:0005657;replication fork;1.83284580882586e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.11243486806815e-05!GO:0016363;nuclear matrix;2.16924208802303e-05!GO:0009109;coenzyme catabolic process;2.1986958254942e-05!GO:0006350;transcription;2.39512149003497e-05!GO:0051170;nuclear import;2.65809451354938e-05!GO:0008186;RNA-dependent ATPase activity;2.76625157159838e-05!GO:0009117;nucleotide metabolic process;2.83996040890094e-05!GO:0005874;microtubule;2.94703706166948e-05!GO:0000075;cell cycle checkpoint;3.39624296770734e-05!GO:0005773;vacuole;3.63786527056385e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.64295842607586e-05!GO:0016310;phosphorylation;3.76884322073972e-05!GO:0003690;double-stranded DNA binding;3.84253853180817e-05!GO:0006612;protein targeting to membrane;3.87339468041089e-05!GO:0051168;nuclear export;4.15206305056777e-05!GO:0045786;negative regulation of progression through cell cycle;4.18643182175009e-05!GO:0051329;interphase of mitotic cell cycle;4.6697211388568e-05!GO:0000776;kinetochore;4.6697211388568e-05!GO:0031982;vesicle;6.64147670044019e-05!GO:0008654;phospholipid biosynthetic process;7.21231838129284e-05!GO:0065007;biological regulation;7.55635822801682e-05!GO:0007264;small GTPase mediated signal transduction;8.00504336259686e-05!GO:0003682;chromatin binding;8.37586442635527e-05!GO:0031410;cytoplasmic vesicle;8.43763835649255e-05!GO:0008094;DNA-dependent ATPase activity;8.48931423302347e-05!GO:0008092;cytoskeletal protein binding;8.50820797904212e-05!GO:0000139;Golgi membrane;8.55285910715513e-05!GO:0004004;ATP-dependent RNA helicase activity;8.95092505839547e-05!GO:0010468;regulation of gene expression;0.000102803021416059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000115033192344465!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116870156147616!GO:0048522;positive regulation of cellular process;0.000117271068870892!GO:0051325;interphase;0.000127004916500644!GO:0045941;positive regulation of transcription;0.000128919835134056!GO:0000323;lytic vacuole;0.00013104395976942!GO:0005764;lysosome;0.00013104395976942!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000139191501905487!GO:0005762;mitochondrial large ribosomal subunit;0.0001444773844996!GO:0000315;organellar large ribosomal subunit;0.0001444773844996!GO:0008361;regulation of cell size;0.000166114998487327!GO:0000314;organellar small ribosomal subunit;0.000166956424091352!GO:0005763;mitochondrial small ribosomal subunit;0.000166956424091352!GO:0003899;DNA-directed RNA polymerase activity;0.000175779334950868!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000177031265087294!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000210543707556929!GO:0030867;rough endoplasmic reticulum membrane;0.000212804507599658!GO:0032774;RNA biosynthetic process;0.000222940085835977!GO:0006352;transcription initiation;0.000248179172187241!GO:0006351;transcription, DNA-dependent;0.00027977195287964!GO:0043021;ribonucleoprotein binding;0.000286701618783138!GO:0006302;double-strand break repair;0.000287193779995787!GO:0009108;coenzyme biosynthetic process;0.000295664651956288!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000317297353833041!GO:0019899;enzyme binding;0.000322975096669967!GO:0048471;perinuclear region of cytoplasm;0.000331374006925633!GO:0003729;mRNA binding;0.000332540857749618!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000346162382776315!GO:0015980;energy derivation by oxidation of organic compounds;0.000358716837138315!GO:0033116;ER-Golgi intermediate compartment membrane;0.000373355707217721!GO:0005905;coated pit;0.000375765981517342!GO:0016049;cell growth;0.000399437091089219!GO:0051789;response to protein stimulus;0.000444885075383134!GO:0006986;response to unfolded protein;0.000444885075383134!GO:0007243;protein kinase cascade;0.000495129175075876!GO:0045892;negative regulation of transcription, DNA-dependent;0.000536238476532132!GO:0007052;mitotic spindle organization and biogenesis;0.000540722754711794!GO:0006414;translational elongation;0.000550305196539895!GO:0005788;endoplasmic reticulum lumen;0.000575506919182443!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000595507000496689!GO:0005769;early endosome;0.00060067471995534!GO:0007017;microtubule-based process;0.000640382051291271!GO:0030521;androgen receptor signaling pathway;0.000652030929873014!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000660152605571747!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000699754373792626!GO:0016859;cis-trans isomerase activity;0.000789484341838153!GO:0007093;mitotic cell cycle checkpoint;0.000800207115075815!GO:0051920;peroxiredoxin activity;0.000832446086329856!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000849359023475177!GO:0007088;regulation of mitosis;0.000850614248716151!GO:0008250;oligosaccharyl transferase complex;0.000887701399538046!GO:0006383;transcription from RNA polymerase III promoter;0.00101589217621648!GO:0000786;nucleosome;0.00102193109760223!GO:0030036;actin cytoskeleton organization and biogenesis;0.00109315986322962!GO:0045454;cell redox homeostasis;0.00109315986322962!GO:0048500;signal recognition particle;0.00110535716960885!GO:0016197;endosome transport;0.00119010613324604!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00130166722052153!GO:0007059;chromosome segregation;0.00130827335389663!GO:0004576;oligosaccharyl transferase activity;0.00133131637592143!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00133906905810665!GO:0046483;heterocycle metabolic process;0.0013443665439283!GO:0001558;regulation of cell growth;0.0014377464369936!GO:0043681;protein import into mitochondrion;0.00155691285104489!GO:0006402;mRNA catabolic process;0.00169532887138553!GO:0006672;ceramide metabolic process;0.00171241762291724!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00171241762291724!GO:0015399;primary active transmembrane transporter activity;0.00171241762291724!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00176676638883187!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180513542116989!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180513542116989!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180513542116989!GO:0007006;mitochondrial membrane organization and biogenesis;0.00190590787241727!GO:0003678;DNA helicase activity;0.00192998465388151!GO:0005048;signal sequence binding;0.00197405144323136!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00198897563076176!GO:0005885;Arp2/3 protein complex;0.00206582852862115!GO:0008022;protein C-terminus binding;0.00219555311512784!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0022010619763776!GO:0045047;protein targeting to ER;0.0022010619763776!GO:0000922;spindle pole;0.00220906279123487!GO:0008312;7S RNA binding;0.00223046025470264!GO:0006839;mitochondrial transport;0.00226600295729048!GO:0051052;regulation of DNA metabolic process;0.00228245350100389!GO:0030133;transport vesicle;0.00228691674627578!GO:0031124;mRNA 3'-end processing;0.00232051632158436!GO:0004674;protein serine/threonine kinase activity;0.00244619120169831!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00244845353416512!GO:0018196;peptidyl-asparagine modification;0.00248636313187669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00248636313187669!GO:0006891;intra-Golgi vesicle-mediated transport;0.00251985299895785!GO:0030027;lamellipodium;0.00251985299895785!GO:0031072;heat shock protein binding;0.00252406465448314!GO:0046519;sphingoid metabolic process;0.00264204170666213!GO:0016251;general RNA polymerase II transcription factor activity;0.0026511353868604!GO:0030663;COPI coated vesicle membrane;0.0026511353868604!GO:0030126;COPI vesicle coat;0.0026511353868604!GO:0045449;regulation of transcription;0.00267656973775579!GO:0007040;lysosome organization and biogenesis;0.00271407855495619!GO:0035258;steroid hormone receptor binding;0.00273124276567057!GO:0016853;isomerase activity;0.00274230535940102!GO:0000059;protein import into nucleus, docking;0.00275543963161312!GO:0005876;spindle microtubule;0.0028705682833514!GO:0046474;glycerophospholipid biosynthetic process;0.00289768570850927!GO:0003711;transcription elongation regulator activity;0.00292267528810954!GO:0016126;sterol biosynthetic process;0.00297627571470313!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00297627571470313!GO:0005637;nuclear inner membrane;0.00299209018610203!GO:0046467;membrane lipid biosynthetic process;0.00299225520941268!GO:0005684;U2-dependent spliceosome;0.00306379555132976!GO:0030134;ER to Golgi transport vesicle;0.00310082616875553!GO:0007033;vacuole organization and biogenesis;0.00318782598837159!GO:0030137;COPI-coated vesicle;0.00327957004896015!GO:0046489;phosphoinositide biosynthetic process;0.0033380481077365!GO:0031968;organelle outer membrane;0.0033404535778012!GO:0016044;membrane organization and biogenesis;0.00334731074668239!GO:0007265;Ras protein signal transduction;0.00342297639097509!GO:0051252;regulation of RNA metabolic process;0.00348917829835401!GO:0003684;damaged DNA binding;0.00355648478521323!GO:0015631;tubulin binding;0.00366563555426701!GO:0006310;DNA recombination;0.0038407456015133!GO:0019867;outer membrane;0.00435958781680349!GO:0030029;actin filament-based process;0.00447143166919959!GO:0001726;ruffle;0.00456031120887311!GO:0043624;cellular protein complex disassembly;0.00487980654166814!GO:0048487;beta-tubulin binding;0.00494402508324401!GO:0032508;DNA duplex unwinding;0.00496019543887901!GO:0032392;DNA geometric change;0.00496019543887901!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00509253773963708!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00512072889117014!GO:0006355;regulation of transcription, DNA-dependent;0.00528200967184377!GO:0030127;COPII vesicle coat;0.00530191757283849!GO:0012507;ER to Golgi transport vesicle membrane;0.00530191757283849!GO:0019843;rRNA binding;0.00534937023638204!GO:0030518;steroid hormone receptor signaling pathway;0.00535891135298223!GO:0006695;cholesterol biosynthetic process;0.0053631262189377!GO:0030658;transport vesicle membrane;0.00571908379862738!GO:0006405;RNA export from nucleus;0.00571980157327439!GO:0005791;rough endoplasmic reticulum;0.00582224517380743!GO:0005869;dynactin complex;0.00586049981149873!GO:0003677;DNA binding;0.00596583174162537!GO:0065009;regulation of a molecular function;0.00598035850097797!GO:0031902;late endosome membrane;0.00657617500989475!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00659385092761144!GO:0016584;nucleosome positioning;0.00696545494287366!GO:0006401;RNA catabolic process;0.00724667323418292!GO:0050681;androgen receptor binding;0.00725462389275689!GO:0030880;RNA polymerase complex;0.00756454617136785!GO:0005741;mitochondrial outer membrane;0.00760407616041378!GO:0044452;nucleolar part;0.00762693131823077!GO:0009116;nucleoside metabolic process;0.00806797742468884!GO:0045045;secretory pathway;0.00810628726924313!GO:0005856;cytoskeleton;0.00812079899048665!GO:0051101;regulation of DNA binding;0.00813139759505556!GO:0006650;glycerophospholipid metabolic process;0.00819275635517925!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00830381830311828!GO:0009112;nucleobase metabolic process;0.00837394732018659!GO:0006611;protein export from nucleus;0.0086124062774966!GO:0003746;translation elongation factor activity;0.0088846413883915!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00895205039561643!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00895205039561643!GO:0006818;hydrogen transport;0.00900668171644203!GO:0042802;identical protein binding;0.00906711927900734!GO:0032984;macromolecular complex disassembly;0.00909058551665967!GO:0006268;DNA unwinding during replication;0.00924409721996599!GO:0008139;nuclear localization sequence binding;0.00924409721996599!GO:0015992;proton transport;0.00935690418097069!GO:0031123;RNA 3'-end processing;0.00935969992303658!GO:0043488;regulation of mRNA stability;0.00935969992303658!GO:0043487;regulation of RNA stability;0.00935969992303658!GO:0003702;RNA polymerase II transcription factor activity;0.0093718615461274!GO:0006626;protein targeting to mitochondrion;0.00947246935382742!GO:0030660;Golgi-associated vesicle membrane;0.0097732054124964!GO:0000082;G1/S transition of mitotic cell cycle;0.0100835488340779!GO:0042393;histone binding;0.0103675324863936!GO:0030132;clathrin coat of coated pit;0.0106664196900017!GO:0006144;purine base metabolic process;0.01076252916499!GO:0008097;5S rRNA binding;0.0110477716766646!GO:0008180;signalosome;0.0114572040052447!GO:0043284;biopolymer biosynthetic process;0.0117018456009001!GO:0043492;ATPase activity, coupled to movement of substances;0.0117069886094687!GO:0016741;transferase activity, transferring one-carbon groups;0.0117629483356097!GO:0051539;4 iron, 4 sulfur cluster binding;0.0118679790217058!GO:0016272;prefoldin complex;0.011923019379231!GO:0006338;chromatin remodeling;0.0120033387862927!GO:0008601;protein phosphatase type 2A regulator activity;0.0121583956298081!GO:0030384;phosphoinositide metabolic process;0.0123847804264864!GO:0009165;nucleotide biosynthetic process;0.0123988988610926!GO:0006892;post-Golgi vesicle-mediated transport;0.0124085173224044!GO:0019783;small conjugating protein-specific protease activity;0.0129048154639229!GO:0006497;protein amino acid lipidation;0.0129048154639229!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0131925350864355!GO:0005832;chaperonin-containing T-complex;0.0133048393873228!GO:0008168;methyltransferase activity;0.0134973626515454!GO:0044262;cellular carbohydrate metabolic process;0.0139320486669855!GO:0008234;cysteine-type peptidase activity;0.0142154998291094!GO:0006595;polyamine metabolic process;0.0144081126283482!GO:0007021;tubulin folding;0.0144081126283482!GO:0006289;nucleotide-excision repair;0.0145488221356868!GO:0043241;protein complex disassembly;0.0146919504481598!GO:0050811;GABA receptor binding;0.015130790158455!GO:0042158;lipoprotein biosynthetic process;0.015294603471278!GO:0007034;vacuolar transport;0.0153939206426345!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0153956444389753!GO:0000428;DNA-directed RNA polymerase complex;0.0153956444389753!GO:0004843;ubiquitin-specific protease activity;0.0155500020136598!GO:0000339;RNA cap binding;0.0155915680891843!GO:0005938;cell cortex;0.0159315284499715!GO:0016491;oxidoreductase activity;0.0161029228619218!GO:0040008;regulation of growth;0.0161339430515055!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168936040132972!GO:0043130;ubiquitin binding;0.0171179129251618!GO:0032182;small conjugating protein binding;0.0171179129251618!GO:0007050;cell cycle arrest;0.017312099313035!GO:0048518;positive regulation of biological process;0.0174813066183703!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0177289394987048!GO:0016408;C-acyltransferase activity;0.0177336521462282!GO:0000049;tRNA binding;0.018180730783503!GO:0006509;membrane protein ectodomain proteolysis;0.018180730783503!GO:0033619;membrane protein proteolysis;0.018180730783503!GO:0045792;negative regulation of cell size;0.018613976661369!GO:0030118;clathrin coat;0.0189919039252805!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0190409146941085!GO:0046983;protein dimerization activity;0.0190557508436435!GO:0030176;integral to endoplasmic reticulum membrane;0.0192582621331775!GO:0006275;regulation of DNA replication;0.0192880227258966!GO:0032200;telomere organization and biogenesis;0.0194071559410373!GO:0000723;telomere maintenance;0.0194071559410373!GO:0030522;intracellular receptor-mediated signaling pathway;0.0194153609244589!GO:0006378;mRNA polyadenylation;0.0194982402757378!GO:0044438;microbody part;0.0194982402757378!GO:0044439;peroxisomal part;0.0194982402757378!GO:0046966;thyroid hormone receptor binding;0.0196451506696067!GO:0006091;generation of precursor metabolites and energy;0.0198342105006385!GO:0008033;tRNA processing;0.0201407712177664!GO:0004221;ubiquitin thiolesterase activity;0.0203358639187025!GO:0043022;ribosome binding;0.0208450066500433!GO:0043596;nuclear replication fork;0.0208511677178134!GO:0006740;NADPH regeneration;0.0208511677178134!GO:0006098;pentose-phosphate shunt;0.0208511677178134!GO:0051087;chaperone binding;0.0208511677178134!GO:0005669;transcription factor TFIID complex;0.0210396843028561!GO:0005875;microtubule associated complex;0.0222573882308519!GO:0000152;nuclear ubiquitin ligase complex;0.0225113255805532!GO:0000228;nuclear chromosome;0.022536564293071!GO:0017166;vinculin binding;0.0230537179368282!GO:0022890;inorganic cation transmembrane transporter activity;0.0232192050599664!GO:0000118;histone deacetylase complex;0.0232379185412264!GO:0004003;ATP-dependent DNA helicase activity;0.0236286539584825!GO:0007004;telomere maintenance via telomerase;0.024190556501717!GO:0022411;cellular component disassembly;0.0242862937643332!GO:0016407;acetyltransferase activity;0.0245346661715624!GO:0006284;base-excision repair;0.0245406778884418!GO:0006376;mRNA splice site selection;0.0245459275493716!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0245459275493716!GO:0043495;protein anchor;0.0246628527110777!GO:0030308;negative regulation of cell growth;0.0247067801951743!GO:0022415;viral reproductive process;0.0249298553872825!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0250133013176834!GO:0015002;heme-copper terminal oxidase activity;0.0250133013176834!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0250133013176834!GO:0004129;cytochrome-c oxidase activity;0.0250133013176834!GO:0000287;magnesium ion binding;0.0257873479211168!GO:0000209;protein polyubiquitination;0.0260722945164273!GO:0006979;response to oxidative stress;0.0261867398085262!GO:0006417;regulation of translation;0.0263769603272412!GO:0051098;regulation of binding;0.0264130909658757!GO:0005774;vacuolar membrane;0.026456170923224!GO:0051272;positive regulation of cell motility;0.0273871801180839!GO:0040017;positive regulation of locomotion;0.0273871801180839!GO:0003779;actin binding;0.0274824822220887!GO:0006270;DNA replication initiation;0.0282413909723823!GO:0022406;membrane docking;0.0282413909723823!GO:0048278;vesicle docking;0.0282413909723823!GO:0007266;Rho protein signal transduction;0.0283938996556988!GO:0000910;cytokinesis;0.0286550083105507!GO:0008610;lipid biosynthetic process;0.0288590369763897!GO:0031903;microbody membrane;0.0290992579233108!GO:0005778;peroxisomal membrane;0.0290992579233108!GO:0007041;lysosomal transport;0.0298781971776361!GO:0004527;exonuclease activity;0.0301519491310979!GO:0033673;negative regulation of kinase activity;0.0306560724120278!GO:0006469;negative regulation of protein kinase activity;0.0306560724120278!GO:0000096;sulfur amino acid metabolic process;0.0311156972385139!GO:0008286;insulin receptor signaling pathway;0.0313619480700714!GO:0007030;Golgi organization and biogenesis;0.031488637212884!GO:0008287;protein serine/threonine phosphatase complex;0.0321928645152497!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0323617244222712!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0323648489215268!GO:0007242;intracellular signaling cascade;0.0326539022737783!GO:0006665;sphingolipid metabolic process;0.0327483524486753!GO:0031529;ruffle organization and biogenesis;0.0329749909059149!GO:0008017;microtubule binding;0.0334086594416086!GO:0051348;negative regulation of transferase activity;0.0339960365994988!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0353290763782609!GO:0016790;thiolester hydrolase activity;0.0355429377871762!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0360442733797858!GO:0048468;cell development;0.0360442733797858!GO:0047485;protein N-terminus binding;0.0362511118016512!GO:0050839;cell adhesion molecule binding;0.0368226804051997!GO:0009081;branched chain family amino acid metabolic process;0.0375014100974847!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0379190439660889!GO:0016579;protein deubiquitination;0.0379632817575473!GO:0030224;monocyte differentiation;0.038266596405387!GO:0000159;protein phosphatase type 2A complex;0.0384332059337376!GO:0000902;cell morphogenesis;0.0386482390897764!GO:0032989;cellular structure morphogenesis;0.0386482390897764!GO:0008415;acyltransferase activity;0.0387849384984618!GO:0030659;cytoplasmic vesicle membrane;0.0389486832679379!GO:0004177;aminopeptidase activity;0.0391056364473417!GO:0005784;translocon complex;0.0395893253346068!GO:0006007;glucose catabolic process;0.0398229543811051!GO:0042770;DNA damage response, signal transduction;0.0398698340798592!GO:0000725;recombinational repair;0.0398698340798592!GO:0000724;double-strand break repair via homologous recombination;0.0398698340798592!GO:0051338;regulation of transferase activity;0.0403175256973411!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0403793266793576!GO:0017134;fibroblast growth factor binding;0.0404180224508589!GO:0031625;ubiquitin protein ligase binding;0.0404595627816033!GO:0030433;ER-associated protein catabolic process;0.0405520214053329!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0405520214053329!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0407940507719697!GO:0009893;positive regulation of metabolic process;0.0410405200528714!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0410405200528714!GO:0006661;phosphatidylinositol biosynthetic process;0.0412050548021899!GO:0051128;regulation of cellular component organization and biogenesis;0.0421108118544464!GO:0000792;heterochromatin;0.0421108118544464!GO:0008538;proteasome activator activity;0.0425039598326872!GO:0001725;stress fiber;0.0425039598326872!GO:0032432;actin filament bundle;0.0425039598326872!GO:0005083;small GTPase regulator activity;0.0425039598326872!GO:0006541;glutamine metabolic process;0.0429736934073618!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0429835988750029!GO:0032906;transforming growth factor-beta2 production;0.0435359466250035!GO:0032909;regulation of transforming growth factor-beta2 production;0.0435359466250035!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0435987534575655!GO:0031325;positive regulation of cellular metabolic process;0.0450708315547165!GO:0030508;thiol-disulfide exchange intermediate activity;0.0456036470782597!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0456036470782597!GO:0010257;NADH dehydrogenase complex assembly;0.0456036470782597!GO:0033108;mitochondrial respiratory chain complex assembly;0.0456036470782597!GO:0006778;porphyrin metabolic process;0.0456105314294833!GO:0033013;tetrapyrrole metabolic process;0.0456105314294833!GO:0005680;anaphase-promoting complex;0.0456757379381035!GO:0008047;enzyme activator activity;0.0459738545391873!GO:0030032;lamellipodium biogenesis;0.0468108947578905!GO:0031901;early endosome membrane;0.0470898334352969!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0470898334352969!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0470898334352969!GO:0005521;lamin binding;0.0470898334352969!GO:0016301;kinase activity;0.0470898334352969!GO:0006904;vesicle docking during exocytosis;0.047955215706089!GO:0006950;response to stress;0.0483902395309557!GO:0050790;regulation of catalytic activity;0.0483902395309557!GO:0030119;AP-type membrane coat adaptor complex;0.0486609320161936!GO:0005689;U12-dependent spliceosome;0.0489733265028328!GO:0005811;lipid particle;0.0493144944632071!GO:0007569;cell aging;0.0493144944632071!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0494462517205008
|sample_id=10425
|sample_id=10425
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 76: Line 99:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=FOX{I1,J2}:2.00704834059;TFDP1:1.69512399037;OCT4_SOX2{dimer}:1.63716387426;NKX2-3_NKX2-5:1.53225129955;PAX8:1.41026268471;SOX2:1.38565585044;SOX{8,9,10}:1.3606810073;GFI1:1.24478132625;NFIX:1.22908916621;PDX1:1.19077124663;EVI1:1.13759023473;SOX17:1.10818145601;ZIC1..3:1.01814084683;NKX2-1,4:1.01472627711;ONECUT1,2:0.997663353432;E2F1..5:0.985193898563;HOXA9_MEIS1:0.933033773238;MYOD1:0.917808494787;CUX2:0.875840376332;FOX{D1,D2}:0.865472475756;MTE{core}:0.852314903137;POU5F1:0.840949846734;GATA4:0.83200109946;ZBTB6:0.819851080701;POU3F1..4:0.79729193804;FOX{F1,F2,J1}:0.780151371437;EGR1..3:0.762068714588;FOXD3:0.748365181813;LEF1_TCF7_TCF7L1,2:0.748342791699;JUN:0.73918453996;FOXP1:0.690388390161;BPTF:0.666861419075;T:0.665344247642;ZNF384:0.664171956548;ADNP_IRX_SIX_ZHX:0.654792238097;NKX3-1:0.633479435449;PAX5:0.626546846015;TLX1..3_NFIC{dimer}:0.590401838771;HMGA1,2:0.585530607244;MED-1{core}:0.552482740154;HOX{A4,D4}:0.548539273196;LHX3,4:0.535158440519;ELK1,4_GABP{A,B1}:0.496589334085;TEF:0.483332040411;MAZ:0.473721639721;ZNF143:0.472321480812;YY1:0.471554536788;NFE2L2:0.454854718223;MYBL2:0.445611818426;FOS_FOS{B,L1}_JUN{B,D}:0.431957346279;BACH2:0.430175597526;FOSL2:0.428125861469;NFE2:0.417213841706;TEAD1:0.411416441032;MYFfamily:0.404763960101;ATF2:0.384986070062;POU1F1:0.376793427631;SOX5:0.374877536379;MEF2{A,B,C,D}:0.354788275089;TFAP2B:0.350513048495;NFY{A,B,C}:0.341257956824;RBPJ:0.323034976468;SMAD1..7,9:0.321411592724;GTF2I:0.305921468483;NR3C1:0.302011714476;BREu{core}:0.300630266409;HOX{A5,B5}:0.299979038821;MZF1:0.299755370281;HIC1:0.282482968211;GCM1,2:0.265279923068;PBX1:0.259064999129;ATF4:0.251125833191;GTF2A1,2:0.249196555742;XCPE1{core}:0.243465153071;NKX6-1,2:0.240322205832;ALX1:0.237548464006;ZNF423:0.22996014705;HAND1,2:0.221690553218;CDC5L:0.208334888428;MYB:0.195527419287;bHLH_family:0.189223765704;PITX1..3:0.187002609059;ATF5_CREB3:0.182650229269;ZFP161:0.174870143317;PRRX1,2:0.168779946147;NHLH1,2:0.161596554915;RREB1:0.154654383597;SREBF1,2:0.145394719989;TBX4,5:0.137802064537;DBP:0.123367137018;PRDM1:0.122378737104;NRF1:0.118380572497;GFI1B:0.091965243679;CDX1,2,4:0.0746221778628;TFAP2{A,C}:0.0453696854308;STAT5{A,B}:0.0451671971391;NFIL3:0.025931567589;REST:0.0192337291207;FOXO1,3,4:0.011855165853;CRX:0.0044779771968;TOPORS:-0.00435455618698;NKX3-2:-0.0218221495051;NR1H4:-0.0350081487094;DMAP1_NCOR{1,2}_SMARC:-0.0404421681187;POU6F1:-0.0557373355322;XBP1:-0.0630021974146;HNF1A:-0.063279274228;ARID5B:-0.0774344011417;VSX1,2:-0.0846660899387;LMO2:-0.104482127729;CEBPA,B_DDIT3:-0.115790454552;ZBTB16:-0.123304201552;SP1:-0.142962962613;RUNX1..3:-0.143247390564;EN1,2:-0.144867436028;TP53:-0.14665639809;TGIF1:-0.15344298762;HSF1,2:-0.163359255369;TFAP4:-0.17377193;NANOG{mouse}:-0.174382584981;IRF1,2:-0.175325166706;SRF:-0.184916321755;HBP1_HMGB_SSRP1_UBTF:-0.189542481443;MAFB:-0.19695808687;RFX2..5_RFXANK_RFXAP:-0.208030754146;SPZ1:-0.215248207568;PAX1,9:-0.216583542852;PATZ1:-0.218446545737;UFEwm:-0.222210690681;AHR_ARNT_ARNT2:-0.240325995624;CREB1:-0.243145973006;IKZF2:-0.258873892952;PAX2:-0.26653273972;FOXM1:-0.268318066741;IKZF1:-0.274244039784;ESRRA:-0.300797115435;GATA6:-0.314474408445;AR:-0.31783269671;NR6A1:-0.32295974986;NFKB1_REL_RELA:-0.327353256088;RXR{A,B,G}:-0.329597796668;PPARG:-0.334039210374;HNF4A_NR2F1,2:-0.338141959046;FOXP3:-0.343934136798;PAX4:-0.343994468041;SPIB:-0.357962480029;ELF1,2,4:-0.379645948342;EBF1:-0.381292129329;SNAI1..3:-0.399159802921;HLF:-0.402571175982;NFE2L1:-0.408177125299;HIF1A:-0.415982112854;GZF1:-0.424365376976;ZEB1:-0.425995646952;STAT1,3:-0.427281089211;MTF1:-0.428727822313;NANOG:-0.429016586856;IRF7:-0.440401729325;ESR1:-0.447856999349;TFCP2:-0.448445024854;FOXQ1:-0.452945449708;RFX1:-0.459448795594;FOXA2:-0.473339788722;POU2F1..3:-0.473693189848;HMX1:-0.484156894675;RORA:-0.492399731959;ATF6:-0.506425185059;STAT2,4,6:-0.512248375099;TBP:-0.519577312449;HOX{A6,A7,B6,B7}:-0.529205442349;HES1:-0.531428385776;SPI1:-0.548254885383;FOXN1:-0.55713677628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570999491697;KLF4:-0.590450344943;ZNF238:-0.590642813924;TLX2:-0.620769215643;NFATC1..3:-0.627958878901;FOXL1:-0.633849148353;ETS1,2:-0.68338598732;NKX2-2,8:-0.692656506454;AIRE:-0.742788053503;PAX6:-0.773908387425;EP300:-0.822791348596;TAL1_TCF{3,4,12}:-0.844203505033;PAX3,7:-0.927197521386;ALX4:-1.06190446236;NR5A1,2:-1.10338700488;ZNF148:-1.13443410528;GLI1..3:-1.32755300632;RXRA_VDR{dimer}:-1.42380658979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50066499836
|top_motifs=FOX{I1,J2}:2.00704834059;TFDP1:1.69512399037;OCT4_SOX2{dimer}:1.63716387426;NKX2-3_NKX2-5:1.53225129955;PAX8:1.41026268471;SOX2:1.38565585044;SOX{8,9,10}:1.3606810073;GFI1:1.24478132625;NFIX:1.22908916621;PDX1:1.19077124663;EVI1:1.13759023473;SOX17:1.10818145601;ZIC1..3:1.01814084683;NKX2-1,4:1.01472627711;ONECUT1,2:0.997663353432;E2F1..5:0.985193898563;HOXA9_MEIS1:0.933033773238;MYOD1:0.917808494787;CUX2:0.875840376332;FOX{D1,D2}:0.865472475756;MTE{core}:0.852314903137;POU5F1:0.840949846734;GATA4:0.83200109946;ZBTB6:0.819851080701;POU3F1..4:0.79729193804;FOX{F1,F2,J1}:0.780151371437;EGR1..3:0.762068714588;FOXD3:0.748365181813;LEF1_TCF7_TCF7L1,2:0.748342791699;JUN:0.73918453996;FOXP1:0.690388390161;BPTF:0.666861419075;T:0.665344247642;ZNF384:0.664171956548;ADNP_IRX_SIX_ZHX:0.654792238097;NKX3-1:0.633479435449;PAX5:0.626546846015;TLX1..3_NFIC{dimer}:0.590401838771;HMGA1,2:0.585530607244;MED-1{core}:0.552482740154;HOX{A4,D4}:0.548539273196;LHX3,4:0.535158440519;ELK1,4_GABP{A,B1}:0.496589334085;TEF:0.483332040411;MAZ:0.473721639721;ZNF143:0.472321480812;YY1:0.471554536788;NFE2L2:0.454854718223;MYBL2:0.445611818426;FOS_FOS{B,L1}_JUN{B,D}:0.431957346279;BACH2:0.430175597526;FOSL2:0.428125861469;NFE2:0.417213841706;TEAD1:0.411416441032;MYFfamily:0.404763960101;ATF2:0.384986070062;POU1F1:0.376793427631;SOX5:0.374877536379;MEF2{A,B,C,D}:0.354788275089;TFAP2B:0.350513048495;NFY{A,B,C}:0.341257956824;RBPJ:0.323034976468;SMAD1..7,9:0.321411592724;GTF2I:0.305921468483;NR3C1:0.302011714476;BREu{core}:0.300630266409;HOX{A5,B5}:0.299979038821;MZF1:0.299755370281;HIC1:0.282482968211;GCM1,2:0.265279923068;PBX1:0.259064999129;ATF4:0.251125833191;GTF2A1,2:0.249196555742;XCPE1{core}:0.243465153071;NKX6-1,2:0.240322205832;ALX1:0.237548464006;ZNF423:0.22996014705;HAND1,2:0.221690553218;CDC5L:0.208334888428;MYB:0.195527419287;bHLH_family:0.189223765704;PITX1..3:0.187002609059;ATF5_CREB3:0.182650229269;ZFP161:0.174870143317;PRRX1,2:0.168779946147;NHLH1,2:0.161596554915;RREB1:0.154654383597;SREBF1,2:0.145394719989;TBX4,5:0.137802064537;DBP:0.123367137018;PRDM1:0.122378737104;NRF1:0.118380572497;GFI1B:0.091965243679;CDX1,2,4:0.0746221778628;TFAP2{A,C}:0.0453696854308;STAT5{A,B}:0.0451671971391;NFIL3:0.025931567589;REST:0.0192337291207;FOXO1,3,4:0.011855165853;CRX:0.0044779771968;TOPORS:-0.00435455618698;NKX3-2:-0.0218221495051;NR1H4:-0.0350081487094;DMAP1_NCOR{1,2}_SMARC:-0.0404421681187;POU6F1:-0.0557373355322;XBP1:-0.0630021974146;HNF1A:-0.063279274228;ARID5B:-0.0774344011417;VSX1,2:-0.0846660899387;LMO2:-0.104482127729;CEBPA,B_DDIT3:-0.115790454552;ZBTB16:-0.123304201552;SP1:-0.142962962613;RUNX1..3:-0.143247390564;EN1,2:-0.144867436028;TP53:-0.14665639809;TGIF1:-0.15344298762;HSF1,2:-0.163359255369;TFAP4:-0.17377193;NANOG{mouse}:-0.174382584981;IRF1,2:-0.175325166706;SRF:-0.184916321755;HBP1_HMGB_SSRP1_UBTF:-0.189542481443;MAFB:-0.19695808687;RFX2..5_RFXANK_RFXAP:-0.208030754146;SPZ1:-0.215248207568;PAX1,9:-0.216583542852;PATZ1:-0.218446545737;UFEwm:-0.222210690681;AHR_ARNT_ARNT2:-0.240325995624;CREB1:-0.243145973006;IKZF2:-0.258873892952;PAX2:-0.26653273972;FOXM1:-0.268318066741;IKZF1:-0.274244039784;ESRRA:-0.300797115435;GATA6:-0.314474408445;AR:-0.31783269671;NR6A1:-0.32295974986;NFKB1_REL_RELA:-0.327353256088;RXR{A,B,G}:-0.329597796668;PPARG:-0.334039210374;HNF4A_NR2F1,2:-0.338141959046;FOXP3:-0.343934136798;PAX4:-0.343994468041;SPIB:-0.357962480029;ELF1,2,4:-0.379645948342;EBF1:-0.381292129329;SNAI1..3:-0.399159802921;HLF:-0.402571175982;NFE2L1:-0.408177125299;HIF1A:-0.415982112854;GZF1:-0.424365376976;ZEB1:-0.425995646952;STAT1,3:-0.427281089211;MTF1:-0.428727822313;NANOG:-0.429016586856;IRF7:-0.440401729325;ESR1:-0.447856999349;TFCP2:-0.448445024854;FOXQ1:-0.452945449708;RFX1:-0.459448795594;FOXA2:-0.473339788722;POU2F1..3:-0.473693189848;HMX1:-0.484156894675;RORA:-0.492399731959;ATF6:-0.506425185059;STAT2,4,6:-0.512248375099;TBP:-0.519577312449;HOX{A6,A7,B6,B7}:-0.529205442349;HES1:-0.531428385776;SPI1:-0.548254885383;FOXN1:-0.55713677628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570999491697;KLF4:-0.590450344943;ZNF238:-0.590642813924;TLX2:-0.620769215643;NFATC1..3:-0.627958878901;FOXL1:-0.633849148353;ETS1,2:-0.68338598732;NKX2-2,8:-0.692656506454;AIRE:-0.742788053503;PAX6:-0.773908387425;EP300:-0.822791348596;TAL1_TCF{3,4,12}:-0.844203505033;PAX3,7:-0.927197521386;ALX4:-1.06190446236;NR5A1,2:-1.10338700488;ZNF148:-1.13443410528;GLI1..3:-1.32755300632;RXRA_VDR{dimer}:-1.42380658979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50066499836
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10425-106D2;search_select_hide=table117:FF:10425-106D2
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:astrocytoma cell line:TM-31
Species:Human (Homo sapiens)
Library ID:CNhs10742
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage42 year old adult
sexfemale
age42
cell typeastrocyte
cell lineTM-31
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005348
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10742 CAGE DRX007830 DRR008702
Accession ID Hg19

Library idBAMCTSS
CNhs10742 DRZ000127 DRZ001512
Accession ID Hg38

Library idBAMCTSS
CNhs10742 DRZ011477 DRZ012862
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0777
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.422
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0.881
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0808
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0236
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.281
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.136
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.133
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0471
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.149
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0808
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth8.341692e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.287
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.179
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0808
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.147
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10742

Jaspar motifP-value
MA0002.20.135
MA0003.10.179
MA0004.10.26
MA0006.10.538
MA0007.10.193
MA0009.10.0689
MA0014.10.539
MA0017.10.00673
MA0018.20.319
MA0019.10.793
MA0024.12.22918e-4
MA0025.10.845
MA0027.10.733
MA0028.10.795
MA0029.10.982
MA0030.10.901
MA0031.10.2
MA0035.20.152
MA0038.10.0519
MA0039.20.0298
MA0040.10.555
MA0041.10.729
MA0042.10.704
MA0043.10.74
MA0046.10.583
MA0047.20.153
MA0048.10.512
MA0050.10.15
MA0051.10.385
MA0052.10.739
MA0055.10.407
MA0057.10.366
MA0058.10.201
MA0059.10.0485
MA0060.10.00153
MA0061.10.00248
MA0062.20.233
MA0065.20.00125
MA0066.10.262
MA0067.10.286
MA0068.10.739
MA0069.10.457
MA0070.10.16
MA0071.10.0537
MA0072.10.424
MA0073.10.252
MA0074.10.0458
MA0076.10.551
MA0077.10.0112
MA0078.10.0529
MA0079.20.339
MA0080.21.6453e-12
MA0081.10.0238
MA0083.10.895
MA0084.10.355
MA0087.10.0911
MA0088.10.219
MA0090.10.0067
MA0091.10.0134
MA0092.10.93
MA0093.10.309
MA0099.24.73133e-25
MA0100.10.787
MA0101.10.0053
MA0102.20.0137
MA0103.10.0125
MA0104.20.169
MA0105.10.00901
MA0106.10.15
MA0107.10.0235
MA0108.20.169
MA0111.10.852
MA0112.22.25956e-4
MA0113.10.0339
MA0114.10.0504
MA0115.10.571
MA0116.10.00218
MA0117.10.534
MA0119.10.828
MA0122.10.0751
MA0124.10.582
MA0125.10.67
MA0131.10.75
MA0135.10.694
MA0136.11.15367e-11
MA0137.20.179
MA0138.20.0894
MA0139.10.691
MA0140.10.534
MA0141.10.00236
MA0142.12.24202e-5
MA0143.10.00154
MA0144.10.0208
MA0145.10.483
MA0146.10.00684
MA0147.10.0854
MA0148.10.0804
MA0149.10.898
MA0150.10.222
MA0152.10.541
MA0153.10.383
MA0154.10.00632
MA0155.10.748
MA0156.11.2375e-6
MA0157.10.215
MA0159.10.028
MA0160.10.00286
MA0162.10.211
MA0163.15.7332e-5
MA0164.10.674
MA0258.10.0122
MA0259.10.229



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10742

Novel motifP-value
10.169
100.133
1000.687
1010.412
1020.823
1030.7
1040.786
1050.624
1060.19
1070.211
1080.669
1090.0207
110.0754
1100.0437
1110.0448
1120.21
1130.0543
1140.00534
1150.0436
1160.372
1170.0449
1180.163
1190.175
120.0397
1200.332
1210.927
1220.811
1230.485
1240.216
1250.928
1260.613
1270.275
1280.225
1290.863
130.147
1300.229
1310.838
1320.462
1330.952
1340.414
1350.201
1360.845
1370.336
1380.852
1390.0548
140.836
1400.774
1410.0431
1420.695
1430.042
1440.934
1450.847
1460.831
1470.835
1480.168
1490.044
150.483
1500.912
1510.23
1520.421
1530.985
1540.969
1550.181
1560.211
1570.532
1580.992
1590.465
160.0588
1600.109
1610.453
1620.259
1630.666
1640.191
1650.792
1660.41
1670.291
1680.909
1690.018
170.0389
180.391
190.196
20.283
200.862
210.259
220.183
230.24
240.789
250.186
260.204
270.0945
280.248
290.15
30.0532
300.396
310.722
320.00133
330.833
340.672
350.663
360.894
370.151
380.0576
390.302
40.428
400.234
410.756
420.741
430.0918
440.00374
450.871
460.07
470.349
480.131
490.133
50.424
500.964
510.226
520.573
530.909
540.758
550.31
560.941
570.589
580.0873
590.0357
60.65
600.12
610.239
620.068
630.751
640.369
650.0454
660.274
670.425
680.403
690.475
70.352
700.172
710.0528
720.0395
730.107
740.201
750.149
760.356
770.148
780.674
790.0794
80.0455
800.456
810.439
820.249
830.784
840.496
850.159
860.707
870.911
880.963
890.0899
90.108
900.715
910.98
920.112
930.774
940.902
950.0182
960.684
970.936
980.13
990.421



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10742


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0100101 (astrocytoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

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