FF:10433-106E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005274 | |||
|accession_numbers=CAGE;DRX007895;DRR008767;DRZ000192;DRZ001577;DRZ011542;DRZ012927 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102411 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10433-106E1 | |id=FF:10433-106E1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102411 | ||
|is_obsolete= | |||
|library_id=CNhs10751 | |||
|library_id_phase_based=2:CNhs10751 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10433 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10433 | |||
|name=giant cell carcinoma cell line:Lu99B | |name=giant cell carcinoma cell line:Lu99B | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10751,LSID692,release008,COMPLETED | |profile_hcage=CNhs10751,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0816056082621284,0.0508638757203747,-0.27483329820609,-0.256971622716754,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.102459134628053,0,0,0,0.0254319378601874,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.249231549277075,0,0,0,0,0,0,0,0,0.044581908333045,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.144580011135418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162990946872706,0,0,-0.0133063134620039,0.114396570461478,0,0,0,0.0508638757203747,0.0395585076540522,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0087612225707804,0.0508638757203747,0,0,-0.178669189630311,-0.587206598146892,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0395585076540522,0,0.0508638757203747,0,0,0,0,0.325981893745413,0,0,0,0,0.0246087892134363,0.0481951553459576,-0.12334885655271,-0.143515142523472,0,0,0.0366354574745984,0,0,0,0,0,0,0.0963903106919151,0.137593858891759,0,0.0471048757507964,0,-0.0504125515893149,0,0,0,0,0,0.461375353922577,0,-0.126062905803552,-0.0174803853569935,0,0,0,0,-0.139882038889872,0,-0.070015608073366,0.0925045743799438,0.271787664499001,-0.384668239431738,-0.00484862106080731,0,0,0,-0.0921183583449881,-0.1455741986999,0,0,0.0535888293477755,0.098945755123255,0,0,-0.391044581551635,0,-0.193773494208292,-0.0604397418968705,0,0.0508638757203747,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.110688335559977,0,0.0508638757203747,0.0963903106919151,0.033634340177596,0.135302793892559,0,0.0736270932061449,0.119794334585231,0.187308893541996,0.148325799415534,0.446682454790284,0,-0.205999416317998,-0.113438854030761,-0.330575486396975,-0.0590980064355617,0.0624515357973909,0.367441652648586,0,-0.0143765800659519,-0.147302573868549,0.0833158165650758,-0.169453250740577,-0.0469367604963482,-0.115714941164694,0.0559396184576895,0,0,0,-0.151691696080445,0,0,-0.0937356822015248,-0.077511985489711,-0.22803160116236,-0.136206715242826,0.0555385820066041,-0.131246251594143,0.520473656111388,-0.106699090697296,0.0207948423484048,0.384872048521358,0.0508638757203747,0,0.00199793650488767,-0.122391115631514,-0.348235174868376,-0.178149240939733,0,-0.346383602919222,0.0692495978143904,0.104926692584264,-0.28218579225549,-0.204288611199502,0,0.0429633324865861,0.0958612945243549,0.0963903106919151,0,0,0,0,0.105721868484082,0.0468485021281869,-0.13646525086363,0.0135016125668604,0.076305505494454,0.0426124944919113,0.210055521981837,0,0.219068215032231,0.171986742138454,0,0.12997787936125,0,-0.0864845838474045,-0.070263401919341,0.0386756533662416,0.228793140922957,0.292290535387474,0.0455097753953271,-0.290861967212734,-0.0133063134620039,0.138181561493639,-0.0505007388122641,0.0870979102280734,0,0.232148816604031,-0.62863425590115,-0.0345964634181887,0.37564425921439,0,0.135590301405957,0,0.130259144873629,0,0.133668963612407,-0.402839892581482,-0.301695515688928,0.021591451545818,0,-0.106356986714735,-0.516343273274973,0,0.164211214088832,0,0.137593858891759,-0.0995032076142647,0.0502860176804238,-0.0946583430727523,0.0174198441183653,0,0.0898974349124892,0,0,-0.281934413871322,0.0363116267346121,0,-0.00335358035272326,-0.235045410464137,-0.186697356657703,0.0216227854568246,0,0,-0.59483646227235,0.0214883828832615,0,-0.33414039931903,0.0345075992256703,-0.182106391719687,-0.253326341486756,0,-0.108622809454255,0,0.0508638757203747,-0.0811374552732605,0,0.293363910285333,0,0,0.208302006246232,0.0932252721783966,0,0,0,0.0424275542725518,0.0508638757203747,0,0,0,0,0,0,-0.188672151826275,0.308238168892812,0,0.109935710301531,0,0,0,0.417518684537592,0.137593858891759,0,0,0,0.497191845314178,0.305729557632774,-0.12301741567642,0.149864785967708,0,0.0254319378601874,0,-0.00587001738494525,-0.0656427032029651,0,0.167866865437784,0,0,0,0,0.0890837529141498,0,0,0.0481951553459576,0,-0.057730457053664,-0.242610986794405,0,0,0,-0.27695440160179,0,0,0,0.0138918214939101,0.196530219579763,0,0,0.161762902642331,0,0.265267686790761,0.504758765611512,0,-0.0972249521535485,-0.245142800004297,0.674573573535523,0,0,-0.019423493441373,0,0.0082951375645499,-0.208858425355076,-0.0315063472452916,0,0.00450716191407037,0,0,0,0,0.0223237988257764,0,-0.214314512399756,0.0254319378601874,0,0,0,0,0.137593858891759,0,0.0508638757203747,0,0,0.0508638757203747,-0.0869381107279674,0.00416625403340473,0.175224742703361,0,0,0,0,0,0,0.00132591478128422,-0.0155263760893522,0,0,0.0254319378601874,0,0,0,0,0,0.167544115582221,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.513943245433509,0,0,-0.139768273301755,0,0.000656359079965015,0,0,0,0,0,0,0,0,0,0,0,0.0142747728563109,-0.670187724850408,0,0,0,0,0,0.0508638757203747,0,-0.27483329820609,0,0,0.0508638757203747,0,-0.113884373708977,0,0,0,0.437412717151696,0,0.0816056082621284,0,0,0,0.0481951553459576,0,0.0508638757203747,0.104926692584264,0,0,0,0,0,0,0,0,0,0,0.0254319378601874,0.0254319378601874,0,0,0.449891254917414,0,-0.111982773269549,0.0307754727458656,0,0,-0.0344388364954173,0,0,0,0,0,0,0.0168547313174305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0508638757203747,0,0,0,0,0,0.0481951553459576,0.0133371115408692,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.191919956246437,0,0,0.0170487652242962,0.0508638757203747,0,0,-0.0200592011997385,-0.04794649260256,-0.0193204387095972,0,0,0,0.154188618043483,0,0,0,0,0.259204506326512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0508638757203747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.102459134628053,0,0,0,0,0,0,0,0,0,0,0,0,0.0481951553459576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0508638757203747,0.0254319378601874,0,0,0,0,0,0,0.139712258754728,0.137593858891759,0,0,0,0,0,0,0.0508638757203747,0,0,0,0,0,0,0,0,0.0254319378601874,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.075492370765285,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 74: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+03 | ||
|rna_weight_ug=50.042 | |rna_weight_ug=50.042 | ||
|sample_age=63 | |sample_age=63 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1971 | |sample_cell_catalog=RCB1971 | ||
|sample_cell_line=Lu99B | |sample_cell_line=Lu99B | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.94593134909307e-261!GO:0043226;organelle;5.71058810894683e-209!GO:0043229;intracellular organelle;1.81790292847869e-208!GO:0043231;intracellular membrane-bound organelle;1.22833608250278e-207!GO:0043227;membrane-bound organelle;1.79047864915846e-207!GO:0005737;cytoplasm;2.35452509096782e-179!GO:0044422;organelle part;7.74209469844441e-132!GO:0044446;intracellular organelle part;2.27032288074675e-130!GO:0044444;cytoplasmic part;2.70336108931735e-118!GO:0044238;primary metabolic process;7.47299802109794e-102!GO:0044237;cellular metabolic process;5.02784355052366e-101!GO:0005634;nucleus;7.28760302239209e-99!GO:0043170;macromolecule metabolic process;9.07390218618193e-98!GO:0032991;macromolecular complex;1.20127363052033e-94!GO:0030529;ribonucleoprotein complex;3.96592435379456e-91!GO:0044428;nuclear part;1.66644218627904e-82!GO:0003723;RNA binding;5.36325861310635e-80!GO:0043233;organelle lumen;2.06849695760264e-78!GO:0031974;membrane-enclosed lumen;2.06849695760264e-78!GO:0005515;protein binding;5.06849980748e-75!GO:0005739;mitochondrion;1.06800419371791e-61!GO:0043283;biopolymer metabolic process;1.09766201318734e-61!GO:0010467;gene expression;2.88259594123462e-61!GO:0006396;RNA processing;5.00602084281332e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.81932229264953e-55!GO:0005840;ribosome;4.53555276899632e-53!GO:0006412;translation;1.7862483267898e-52!GO:0031981;nuclear lumen;5.43340505811527e-51!GO:0016043;cellular component organization and biogenesis;4.38831742641364e-50!GO:0019538;protein metabolic process;1.28369054601807e-49!GO:0033036;macromolecule localization;4.78519477881141e-46!GO:0003735;structural constituent of ribosome;3.67114643619373e-45!GO:0015031;protein transport;7.16635506204548e-45!GO:0044267;cellular protein metabolic process;1.72620967571686e-44!GO:0044260;cellular macromolecule metabolic process;2.24712973758189e-44!GO:0016071;mRNA metabolic process;2.54171679936065e-44!GO:0043234;protein complex;3.55489593482789e-44!GO:0008104;protein localization;5.3037132535982e-42!GO:0031090;organelle membrane;1.21920241499051e-41!GO:0008380;RNA splicing;3.96540882680735e-41!GO:0045184;establishment of protein localization;6.11870572572348e-41!GO:0044429;mitochondrial part;1.16875323243308e-38!GO:0044249;cellular biosynthetic process;1.32227666200462e-38!GO:0009059;macromolecule biosynthetic process;3.99978514395234e-38!GO:0009058;biosynthetic process;4.95860987947008e-38!GO:0033279;ribosomal subunit;1.06301389216723e-37!GO:0031967;organelle envelope;1.35180215959331e-37!GO:0006397;mRNA processing;1.42842216403322e-37!GO:0005829;cytosol;1.50666325772053e-37!GO:0031975;envelope;3.18652831578334e-37!GO:0003676;nucleic acid binding;1.03464697999399e-35!GO:0046907;intracellular transport;1.72753275885198e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.21989505582775e-32!GO:0016070;RNA metabolic process;1.87499343880848e-32!GO:0006996;organelle organization and biogenesis;8.23998690620212e-32!GO:0005654;nucleoplasm;1.19484483186673e-31!GO:0065003;macromolecular complex assembly;1.98042901251044e-31!GO:0043228;non-membrane-bound organelle;2.23336212464737e-30!GO:0043232;intracellular non-membrane-bound organelle;2.23336212464737e-30!GO:0006886;intracellular protein transport;8.08691187460654e-30!GO:0005681;spliceosome;8.83237943631293e-29!GO:0022607;cellular component assembly;2.50389615086251e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.30849452251689e-28!GO:0000166;nucleotide binding;2.13795544849513e-27!GO:0006259;DNA metabolic process;2.30137967319313e-27!GO:0044451;nucleoplasm part;2.33193694788889e-25!GO:0005740;mitochondrial envelope;5.59349916048815e-23!GO:0044445;cytosolic part;5.71679645145696e-23!GO:0051641;cellular localization;7.58879143049171e-23!GO:0051649;establishment of cellular localization;8.09400792762433e-23!GO:0019866;organelle inner membrane;3.87088140277497e-22!GO:0031966;mitochondrial membrane;8.04723467019337e-22!GO:0005730;nucleolus;9.61493174413565e-21!GO:0016874;ligase activity;1.89756261091085e-20!GO:0006512;ubiquitin cycle;2.29226909132294e-20!GO:0016462;pyrophosphatase activity;5.86694204708803e-20!GO:0015934;large ribosomal subunit;6.28565558873471e-20!GO:0005743;mitochondrial inner membrane;6.44439310743373e-20!GO:0022618;protein-RNA complex assembly;6.8390983807066e-20!GO:0006457;protein folding;7.05974553295954e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.34387729503752e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;9.79160512124529e-20!GO:0008135;translation factor activity, nucleic acid binding;1.14165181166629e-19!GO:0017111;nucleoside-triphosphatase activity;1.71636123221744e-19!GO:0008134;transcription factor binding;2.58888983682098e-19!GO:0015935;small ribosomal subunit;9.55320898286659e-19!GO:0031980;mitochondrial lumen;1.17134566153126e-18!GO:0005759;mitochondrial matrix;1.17134566153126e-18!GO:0032553;ribonucleotide binding;1.30777599777085e-18!GO:0032555;purine ribonucleotide binding;1.30777599777085e-18!GO:0017076;purine nucleotide binding;1.92374642736511e-18!GO:0044265;cellular macromolecule catabolic process;3.66589259944499e-18!GO:0048770;pigment granule;5.75309656933288e-18!GO:0042470;melanosome;5.75309656933288e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.25133714260143e-18!GO:0006119;oxidative phosphorylation;1.39829880122884e-17!GO:0019941;modification-dependent protein catabolic process;1.79490252118215e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.79490252118215e-17!GO:0007049;cell cycle;2.46977716013394e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.63082877151645e-17!GO:0044257;cellular protein catabolic process;3.08201741865444e-17!GO:0012505;endomembrane system;6.28907073639128e-17!GO:0043285;biopolymer catabolic process;1.58333857883165e-16!GO:0006974;response to DNA damage stimulus;2.28594498978371e-16!GO:0044455;mitochondrial membrane part;3.22318292147791e-16!GO:0006605;protein targeting;9.77433474363154e-16!GO:0005635;nuclear envelope;1.04853509540032e-15!GO:0009057;macromolecule catabolic process;1.25555678287928e-15!GO:0044248;cellular catabolic process;1.53722950659595e-15!GO:0051186;cofactor metabolic process;1.77154565949431e-15!GO:0043412;biopolymer modification;2.86307363175675e-15!GO:0005524;ATP binding;4.8843632684464e-15!GO:0031965;nuclear membrane;5.8655065371565e-15!GO:0032559;adenyl ribonucleotide binding;6.18289288193922e-15!GO:0030163;protein catabolic process;9.01301538083013e-15!GO:0030554;adenyl nucleotide binding;1.20139635245461e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.00875603539215e-14!GO:0000375;RNA splicing, via transesterification reactions;2.00875603539215e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.00875603539215e-14!GO:0051082;unfolded protein binding;2.50200280140713e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.52933162076722e-14!GO:0005761;mitochondrial ribosome;2.99551623274258e-14!GO:0000313;organellar ribosome;2.99551623274258e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.50793074441072e-14!GO:0042254;ribosome biogenesis and assembly;4.74866135207994e-14!GO:0050794;regulation of cellular process;7.91713358898708e-14!GO:0005746;mitochondrial respiratory chain;1.04737186220044e-13!GO:0006366;transcription from RNA polymerase II promoter;1.07944503595057e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.21667150331291e-13!GO:0003743;translation initiation factor activity;1.7313632582016e-13!GO:0016192;vesicle-mediated transport;1.80629873653187e-13!GO:0006464;protein modification process;2.2490857780073e-13!GO:0005794;Golgi apparatus;2.66098027037084e-13!GO:0006281;DNA repair;3.19332561640378e-13!GO:0006732;coenzyme metabolic process;3.50548656869893e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.64517191914035e-13!GO:0003712;transcription cofactor activity;8.54049146747334e-13!GO:0044453;nuclear membrane part;1.55189523085931e-12!GO:0048193;Golgi vesicle transport;1.6442521492862e-12!GO:0043687;post-translational protein modification;1.64846133705016e-12!GO:0006399;tRNA metabolic process;1.85193666497479e-12!GO:0004386;helicase activity;2.18447207952291e-12!GO:0005783;endoplasmic reticulum;2.57247792055899e-12!GO:0006413;translational initiation;2.74958464656775e-12!GO:0051276;chromosome organization and biogenesis;4.20373026538807e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.67658380184813e-12!GO:0003954;NADH dehydrogenase activity;4.67658380184813e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.67658380184813e-12!GO:0006913;nucleocytoplasmic transport;5.23316812369819e-12!GO:0016604;nuclear body;5.80707205119429e-12!GO:0044432;endoplasmic reticulum part;1.41941686987035e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.41941686987035e-11!GO:0051169;nuclear transport;1.49725188445593e-11!GO:0022402;cell cycle process;1.64464722628255e-11!GO:0012501;programmed cell death;2.23833278074685e-11!GO:0009719;response to endogenous stimulus;2.6410563438719e-11!GO:0006446;regulation of translational initiation;2.80894083250492e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.00740709873696e-11!GO:0008639;small protein conjugating enzyme activity;3.61135794402548e-11!GO:0006323;DNA packaging;4.0123659847754e-11!GO:0006915;apoptosis;4.63668225360624e-11!GO:0004842;ubiquitin-protein ligase activity;6.94522157629429e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.59524880002086e-11!GO:0042775;organelle ATP synthesis coupled electron transport;9.13031815323926e-11!GO:0042773;ATP synthesis coupled electron transport;9.13031815323926e-11!GO:0016887;ATPase activity;1.68945427866011e-10!GO:0019787;small conjugating protein ligase activity;1.76767329739347e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.16146338798283e-10!GO:0045271;respiratory chain complex I;2.16146338798283e-10!GO:0005747;mitochondrial respiratory chain complex I;2.16146338798283e-10!GO:0000278;mitotic cell cycle;2.44038220144428e-10!GO:0050789;regulation of biological process;2.53168314483695e-10!GO:0008026;ATP-dependent helicase activity;2.83306740334834e-10!GO:0016607;nuclear speck;3.46279886679606e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.47648398182748e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.47648398182748e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.47648398182748e-10!GO:0005643;nuclear pore;3.72437915497279e-10!GO:0019222;regulation of metabolic process;3.74865187360314e-10!GO:0008219;cell death;4.1591834486976e-10!GO:0016265;death;4.1591834486976e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.40984675715589e-10!GO:0043038;amino acid activation;4.42099451837727e-10!GO:0006418;tRNA aminoacylation for protein translation;4.42099451837727e-10!GO:0043039;tRNA aminoacylation;4.42099451837727e-10!GO:0042623;ATPase activity, coupled;4.94988890914543e-10!GO:0005793;ER-Golgi intermediate compartment;8.99523919307945e-10!GO:0006403;RNA localization;1.32372060801047e-09!GO:0050657;nucleic acid transport;1.95486771034516e-09!GO:0051236;establishment of RNA localization;1.95486771034516e-09!GO:0050658;RNA transport;1.95486771034516e-09!GO:0016881;acid-amino acid ligase activity;1.95739047842821e-09!GO:0016568;chromatin modification;2.25076995702976e-09!GO:0008565;protein transporter activity;2.37574393439249e-09!GO:0005768;endosome;3.1052924370678e-09!GO:0065002;intracellular protein transport across a membrane;3.68235300435518e-09!GO:0006461;protein complex assembly;3.71396927916025e-09!GO:0005694;chromosome;4.40606273672127e-09!GO:0006364;rRNA processing;4.48760318694657e-09!GO:0006260;DNA replication;4.9985873111507e-09!GO:0017038;protein import;6.26910895265348e-09!GO:0009056;catabolic process;7.19009607538554e-09!GO:0016072;rRNA metabolic process;7.63917857980667e-09!GO:0051188;cofactor biosynthetic process;1.06489325984363e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.5193478189446e-08!GO:0043566;structure-specific DNA binding;1.5237457529623e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.55477113269004e-08!GO:0009060;aerobic respiration;2.30890489035549e-08!GO:0006163;purine nucleotide metabolic process;2.68915011139759e-08!GO:0045333;cellular respiration;3.28863185291319e-08!GO:0009055;electron carrier activity;3.73527210721943e-08!GO:0046930;pore complex;3.85083099057579e-08!GO:0005789;endoplasmic reticulum membrane;4.65384462005938e-08!GO:0009259;ribonucleotide metabolic process;5.31447815149351e-08!GO:0016563;transcription activator activity;5.50967424264796e-08!GO:0000074;regulation of progression through cell cycle;5.75220734734087e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.50040195445905e-08!GO:0006164;purine nucleotide biosynthetic process;6.97730895396561e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.02397297930553e-08!GO:0051726;regulation of cell cycle;7.33361886752202e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.91183055560927e-08!GO:0048523;negative regulation of cellular process;8.75542469139104e-08!GO:0051028;mRNA transport;1.01271808888492e-07!GO:0003924;GTPase activity;1.18660614003241e-07!GO:0005667;transcription factor complex;1.20752807940174e-07!GO:0006350;transcription;1.24578206869917e-07!GO:0031323;regulation of cellular metabolic process;1.25721043882518e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.32230767252812e-07!GO:0000087;M phase of mitotic cell cycle;1.38631306946356e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.38680875063439e-07!GO:0032446;protein modification by small protein conjugation;1.39026804587483e-07!GO:0009150;purine ribonucleotide metabolic process;1.44257818299181e-07!GO:0016740;transferase activity;1.49935005578498e-07!GO:0009108;coenzyme biosynthetic process;1.69174266563805e-07!GO:0043067;regulation of programmed cell death;2.01299532778947e-07!GO:0016567;protein ubiquitination;2.22214345240284e-07!GO:0015630;microtubule cytoskeleton;2.3733180605417e-07!GO:0042981;regulation of apoptosis;2.40350661816691e-07!GO:0007067;mitosis;2.64734137979081e-07!GO:0003697;single-stranded DNA binding;2.92958825969078e-07!GO:0065004;protein-DNA complex assembly;2.99053371815e-07!GO:0044427;chromosomal part;2.99053371815e-07!GO:0009260;ribonucleotide biosynthetic process;3.09442915786229e-07!GO:0000245;spliceosome assembly;3.29350278752704e-07!GO:0051246;regulation of protein metabolic process;3.53601390228801e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.75617820204132e-07!GO:0016564;transcription repressor activity;3.83973229654926e-07!GO:0006099;tricarboxylic acid cycle;4.27881193053256e-07!GO:0046356;acetyl-CoA catabolic process;4.27881193053256e-07!GO:0003713;transcription coactivator activity;4.46030046302626e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.79775319956754e-07!GO:0051301;cell division;5.09908453381248e-07!GO:0000151;ubiquitin ligase complex;6.3540593650011e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.63981348951171e-07!GO:0007005;mitochondrion organization and biogenesis;6.83624116761997e-07!GO:0043069;negative regulation of programmed cell death;7.71918641298431e-07!GO:0051427;hormone receptor binding;7.71918641298431e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.71918641298431e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.35205164184004e-07!GO:0051170;nuclear import;8.555927813944e-07!GO:0006333;chromatin assembly or disassembly;8.83865214992707e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.06618895191041e-07!GO:0016779;nucleotidyltransferase activity;1.03938540659617e-06!GO:0030120;vesicle coat;1.07425653077125e-06!GO:0030662;coated vesicle membrane;1.07425653077125e-06!GO:0031324;negative regulation of cellular metabolic process;1.1227212622784e-06!GO:0065007;biological regulation;1.1509026458137e-06!GO:0048519;negative regulation of biological process;1.32917717785397e-06!GO:0009117;nucleotide metabolic process;1.53665571316365e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5416698189523e-06!GO:0031988;membrane-bound vesicle;1.65242331567022e-06!GO:0043066;negative regulation of apoptosis;1.71429955725835e-06!GO:0035257;nuclear hormone receptor binding;1.71866724223596e-06!GO:0006084;acetyl-CoA metabolic process;1.73460646313363e-06!GO:0015986;ATP synthesis coupled proton transport;1.78555340359332e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.78555340359332e-06!GO:0010468;regulation of gene expression;1.83745143727955e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.83745143727955e-06!GO:0006606;protein import into nucleus;1.86735111523414e-06!GO:0048475;coated membrane;1.89474301612323e-06!GO:0030117;membrane coat;1.89474301612323e-06!GO:0006916;anti-apoptosis;1.98348365024847e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.07704475711875e-06!GO:0003714;transcription corepressor activity;2.14593415827203e-06!GO:0022403;cell cycle phase;2.21198749417508e-06!GO:0044440;endosomal part;2.47830240835104e-06!GO:0010008;endosome membrane;2.47830240835104e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.66727026544088e-06!GO:0005525;GTP binding;2.66798963823507e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.76655265498227e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.14358052992569e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.14358052992569e-06!GO:0009141;nucleoside triphosphate metabolic process;3.16882290366699e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.60208630985594e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.60208630985594e-06!GO:0009109;coenzyme catabolic process;3.73406709389346e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.03343274699447e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.03343274699447e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.47809731556046e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.57449154696242e-06!GO:0016481;negative regulation of transcription;5.18733559056844e-06!GO:0031982;vesicle;5.3810637184397e-06!GO:0051187;cofactor catabolic process;6.78148891296901e-06!GO:0006613;cotranslational protein targeting to membrane;7.57494955695793e-06!GO:0031410;cytoplasmic vesicle;7.87104649694193e-06!GO:0009892;negative regulation of metabolic process;9.54606968853813e-06!GO:0045259;proton-transporting ATP synthase complex;9.88976324740666e-06!GO:0003724;RNA helicase activity;1.03883622975132e-05!GO:0019829;cation-transporting ATPase activity;1.19741256678016e-05!GO:0006793;phosphorus metabolic process;1.2225451634229e-05!GO:0006796;phosphate metabolic process;1.2225451634229e-05!GO:0000785;chromatin;1.31127919594245e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.42383673573647e-05!GO:0032774;RNA biosynthetic process;1.49348320239004e-05!GO:0003690;double-stranded DNA binding;1.64241821957059e-05!GO:0006351;transcription, DNA-dependent;1.73407700894795e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.80150631745799e-05!GO:0005798;Golgi-associated vesicle;1.83795977358663e-05!GO:0005770;late endosome;1.89478305844414e-05!GO:0008654;phospholipid biosynthetic process;1.90565813089537e-05!GO:0046034;ATP metabolic process;1.91096449172285e-05!GO:0043021;ribonucleoprotein binding;1.9559450179223e-05!GO:0006754;ATP biosynthetic process;2.15335853820675e-05!GO:0006753;nucleoside phosphate metabolic process;2.15335853820675e-05!GO:0044431;Golgi apparatus part;2.38973361486869e-05!GO:0000279;M phase;2.67691114144126e-05!GO:0005813;centrosome;2.81034284686204e-05!GO:0005788;endoplasmic reticulum lumen;3.15826257676768e-05!GO:0043623;cellular protein complex assembly;3.23707138252864e-05!GO:0016787;hydrolase activity;3.56901548318525e-05!GO:0005762;mitochondrial large ribosomal subunit;3.76225203592875e-05!GO:0000315;organellar large ribosomal subunit;3.76225203592875e-05!GO:0006261;DNA-dependent DNA replication;4.55365729200417e-05!GO:0032561;guanyl ribonucleotide binding;4.69090455679256e-05!GO:0019001;guanyl nucleotide binding;4.69090455679256e-05!GO:0006752;group transfer coenzyme metabolic process;5.04295529947664e-05!GO:0004298;threonine endopeptidase activity;5.59271636516464e-05!GO:0019899;enzyme binding;5.73478435361066e-05!GO:0005815;microtubule organizing center;6.11969875836254e-05!GO:0045449;regulation of transcription;6.11969875836254e-05!GO:0031252;leading edge;6.437348777087e-05!GO:0051789;response to protein stimulus;8.19053690852481e-05!GO:0006986;response to unfolded protein;8.19053690852481e-05!GO:0003899;DNA-directed RNA polymerase activity;8.68105522701148e-05!GO:0005769;early endosome;9.75268060106372e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000105850612773483!GO:0048471;perinuclear region of cytoplasm;0.000118849745490998!GO:0016859;cis-trans isomerase activity;0.000135504146538182!GO:0003746;translation elongation factor activity;0.000142285314370367!GO:0016310;phosphorylation;0.000181815732106422!GO:0005905;coated pit;0.000219331922813237!GO:0016853;isomerase activity;0.000232904040033065!GO:0000314;organellar small ribosomal subunit;0.000243719346078352!GO:0005763;mitochondrial small ribosomal subunit;0.000243719346078352!GO:0008033;tRNA processing;0.000254531210487602!GO:0051168;nuclear export;0.00026064889777184!GO:0030867;rough endoplasmic reticulum membrane;0.000268009573809174!GO:0005048;signal sequence binding;0.00029941640679325!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000309222995741817!GO:0007243;protein kinase cascade;0.000311275044548694!GO:0045786;negative regulation of progression through cell cycle;0.000314831253885073!GO:0016363;nuclear matrix;0.000316242887984873!GO:0015980;energy derivation by oxidation of organic compounds;0.000332472417307026!GO:0005819;spindle;0.000333173172924306!GO:0044452;nucleolar part;0.000357462403546225!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000362876877217674!GO:0006383;transcription from RNA polymerase III promoter;0.000384198477977728!GO:0008186;RNA-dependent ATPase activity;0.00040259636515786!GO:0006402;mRNA catabolic process;0.000406703671130724!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000416533540132445!GO:0006352;transcription initiation;0.000418605898084638!GO:0048522;positive regulation of cellular process;0.000434121877986382!GO:0003729;mRNA binding;0.000441227216819267!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000520315088547127!GO:0046489;phosphoinositide biosynthetic process;0.000526432715992254!GO:0046474;glycerophospholipid biosynthetic process;0.000541470759028644!GO:0005773;vacuole;0.000563247109341587!GO:0006414;translational elongation;0.000565849685012184!GO:0006355;regulation of transcription, DNA-dependent;0.000579119083302211!GO:0045893;positive regulation of transcription, DNA-dependent;0.000666091657323014!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000701662362627307!GO:0016491;oxidoreductase activity;0.000743500134018136!GO:0006612;protein targeting to membrane;0.000746171285576494!GO:0045454;cell redox homeostasis;0.000782660097113155!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000797218731587751!GO:0030036;actin cytoskeleton organization and biogenesis;0.000811981419646299!GO:0045941;positive regulation of transcription;0.000832647452740648!GO:0000049;tRNA binding;0.000866829133704114!GO:0003678;DNA helicase activity;0.000921530680885926!GO:0005885;Arp2/3 protein complex;0.00093674779283976!GO:0050662;coenzyme binding;0.000981466992583297!GO:0006334;nucleosome assembly;0.000981466992583297!GO:0009165;nucleotide biosynthetic process;0.00100040661720054!GO:0005791;rough endoplasmic reticulum;0.00100040661720054!GO:0000323;lytic vacuole;0.00100188429495464!GO:0005764;lysosome;0.00100188429495464!GO:0016044;membrane organization and biogenesis;0.00101957592769893!GO:0033116;ER-Golgi intermediate compartment membrane;0.00102017878995685!GO:0000139;Golgi membrane;0.00105614795343307!GO:0065009;regulation of a molecular function;0.00106201495645741!GO:0006839;mitochondrial transport;0.00106853477267559!GO:0031497;chromatin assembly;0.00108501066084696!GO:0003702;RNA polymerase II transcription factor activity;0.00109386013162765!GO:0031072;heat shock protein binding;0.0011369974581017!GO:0004004;ATP-dependent RNA helicase activity;0.00116516909872864!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0011796769599002!GO:0016251;general RNA polymerase II transcription factor activity;0.00122369095439637!GO:0004674;protein serine/threonine kinase activity;0.00125837832165462!GO:0045045;secretory pathway;0.00132507680036421!GO:0030521;androgen receptor signaling pathway;0.00132806574304913!GO:0008250;oligosaccharyl transferase complex;0.00142622972349001!GO:0019867;outer membrane;0.00143697126245222!GO:0007010;cytoskeleton organization and biogenesis;0.00147047550948585!GO:0048500;signal recognition particle;0.00147121838740136!GO:0046467;membrane lipid biosynthetic process;0.00155383917095673!GO:0042802;identical protein binding;0.00157401436870752!GO:0046966;thyroid hormone receptor binding;0.00164508554314564!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00165307479954455!GO:0031968;organelle outer membrane;0.00165307479954455!GO:0051252;regulation of RNA metabolic process;0.00166727666895599!GO:0005874;microtubule;0.00171520684093226!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00175906821136174!GO:0051052;regulation of DNA metabolic process;0.00205499073984387!GO:0045892;negative regulation of transcription, DNA-dependent;0.00211813064368245!GO:0007264;small GTPase mediated signal transduction;0.00214847669991472!GO:0003682;chromatin binding;0.00216768990068413!GO:0051920;peroxiredoxin activity;0.00218352328261957!GO:0008361;regulation of cell size;0.00221371272170816!GO:0000059;protein import into nucleus, docking;0.00223880367794074!GO:0051087;chaperone binding;0.00234513634135553!GO:0004576;oligosaccharyl transferase activity;0.00236509692506465!GO:0035258;steroid hormone receptor binding;0.00241399077048351!GO:0006401;RNA catabolic process;0.00246023425802259!GO:0051287;NAD binding;0.00251431072531416!GO:0005637;nuclear inner membrane;0.00252593035396945!GO:0019843;rRNA binding;0.00263386602656191!GO:0043681;protein import into mitochondrion;0.00263774332043378!GO:0008312;7S RNA binding;0.00274955561668653!GO:0003684;damaged DNA binding;0.00294344341083331!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00294730217364414!GO:0006626;protein targeting to mitochondrion;0.00303876873121285!GO:0030880;RNA polymerase complex;0.0030519923753783!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00306499810717768!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00306499810717768!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00306499810717768!GO:0008632;apoptotic program;0.00337897480927404!GO:0006497;protein amino acid lipidation;0.00343713194148014!GO:0030134;ER to Golgi transport vesicle;0.00344827035083825!GO:0030384;phosphoinositide metabolic process;0.00346234699000959!GO:0008094;DNA-dependent ATPase activity;0.00351370380738425!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00353928822088847!GO:0016197;endosome transport;0.00364155951767046!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00378629549844983!GO:0045047;protein targeting to ER;0.00378629549844983!GO:0018196;peptidyl-asparagine modification;0.00399421756027057!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00399421756027057!GO:0016049;cell growth;0.00399421756027057!GO:0031902;late endosome membrane;0.00400266725170219!GO:0032984;macromolecular complex disassembly;0.00415641500955551!GO:0006891;intra-Golgi vesicle-mediated transport;0.00426989440227965!GO:0003711;transcription elongation regulator activity;0.00429676155367144!GO:0005741;mitochondrial outer membrane;0.00437269157836668!GO:0030663;COPI coated vesicle membrane;0.00437269157836668!GO:0030126;COPI vesicle coat;0.00437269157836668!GO:0015631;tubulin binding;0.00449421396522233!GO:0006650;glycerophospholipid metabolic process;0.00485353688669044!GO:0043022;ribosome binding;0.00491311219209554!GO:0006338;chromatin remodeling;0.00498435694105501!GO:0031625;ubiquitin protein ligase binding;0.00504145869409834!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00505003445508647!GO:0000428;DNA-directed RNA polymerase complex;0.00505003445508647!GO:0043624;cellular protein complex disassembly;0.00506705771591843!GO:0030518;steroid hormone receptor signaling pathway;0.00513141904470597!GO:0006091;generation of precursor metabolites and energy;0.00523766633654249!GO:0030132;clathrin coat of coated pit;0.00526630603369576!GO:0016272;prefoldin complex;0.00526649919243215!GO:0032508;DNA duplex unwinding;0.00535849406085681!GO:0032392;DNA geometric change;0.00535849406085681!GO:0043488;regulation of mRNA stability;0.00535849406085681!GO:0043487;regulation of RNA stability;0.00535849406085681!GO:0008168;methyltransferase activity;0.0054421692105338!GO:0005657;replication fork;0.00564288500216136!GO:0016741;transferase activity, transferring one-carbon groups;0.00572943542415208!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00574008083086081!GO:0030029;actin filament-based process;0.00583565617815347!GO:0022406;membrane docking;0.00587306112109311!GO:0048278;vesicle docking;0.00587306112109311!GO:0046483;heterocycle metabolic process;0.00592761321348453!GO:0001558;regulation of cell growth;0.00611127338470329!GO:0030658;transport vesicle membrane;0.00615308309156003!GO:0033673;negative regulation of kinase activity;0.00625001578565961!GO:0006469;negative regulation of protein kinase activity;0.00625001578565961!GO:0003677;DNA binding;0.00649239376534445!GO:0008139;nuclear localization sequence binding;0.00660964819929391!GO:0042158;lipoprotein biosynthetic process;0.00674891852666682!GO:0043241;protein complex disassembly;0.00696041262575591!GO:0030118;clathrin coat;0.00713261336724565!GO:0051329;interphase of mitotic cell cycle;0.00735572090993238!GO:0043284;biopolymer biosynthetic process;0.00748359439816166!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00764487145814015!GO:0031901;early endosome membrane;0.00771183505959579!GO:0005869;dynactin complex;0.00778467953844879!GO:0009116;nucleoside metabolic process;0.00782329160795876!GO:0031124;mRNA 3'-end processing;0.00790562813484445!GO:0030137;COPI-coated vesicle;0.00801707262270347!GO:0006376;mRNA splice site selection;0.00806851196451378!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00806851196451378!GO:0006740;NADPH regeneration;0.00822801135523147!GO:0006098;pentose-phosphate shunt;0.00822801135523147!GO:0048487;beta-tubulin binding;0.00831007334807595!GO:0022411;cellular component disassembly;0.00846304772434924!GO:0050681;androgen receptor binding;0.00853264173244716!GO:0017166;vinculin binding;0.00865065608919693!GO:0030133;transport vesicle;0.0089171141212581!GO:0009112;nucleobase metabolic process;0.00896680663958594!GO:0030127;COPII vesicle coat;0.00897651918976744!GO:0012507;ER to Golgi transport vesicle membrane;0.00897651918976744!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00898091302686244!GO:0005684;U2-dependent spliceosome;0.00974758384147537!GO:0005832;chaperonin-containing T-complex;0.00983035773647404!GO:0006904;vesicle docking during exocytosis;0.00995208248364741!GO:0030027;lamellipodium;0.00995208248364741!GO:0007006;mitochondrial membrane organization and biogenesis;0.00997163308925066!GO:0006733;oxidoreduction coenzyme metabolic process;0.0101528172259268!GO:0006268;DNA unwinding during replication;0.0101528172259268!GO:0051348;negative regulation of transferase activity;0.0102276154315217!GO:0006892;post-Golgi vesicle-mediated transport;0.0102361575036664!GO:0006405;RNA export from nucleus;0.0102903673780782!GO:0006506;GPI anchor biosynthetic process;0.0105195165131981!GO:0006289;nucleotide-excision repair;0.0106210657451225!GO:0000339;RNA cap binding;0.0106727716775065!GO:0006310;DNA recombination;0.0108586595619379!GO:0007051;spindle organization and biogenesis;0.0109709946691183!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0110358668019211!GO:0051101;regulation of DNA binding;0.01126042333157!GO:0030176;integral to endoplasmic reticulum membrane;0.011328430036312!GO:0019752;carboxylic acid metabolic process;0.011328430036312!GO:0000776;kinetochore;0.0113997455279592!GO:0006302;double-strand break repair;0.0114304377919198!GO:0016791;phosphoric monoester hydrolase activity;0.0114483601271734!GO:0016407;acetyltransferase activity;0.011786960255256!GO:0047485;protein N-terminus binding;0.011906754654204!GO:0006007;glucose catabolic process;0.0120212006454151!GO:0048037;cofactor binding;0.0120212006454151!GO:0048518;positive regulation of biological process;0.0120965508772774!GO:0000118;histone deacetylase complex;0.0121324173772169!GO:0046983;protein dimerization activity;0.0121324173772169!GO:0006520;amino acid metabolic process;0.012161561577035!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0122330980784573!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0122330980784573!GO:0001726;ruffle;0.0123469464953779!GO:0030660;Golgi-associated vesicle membrane;0.0123593716778947!GO:0000096;sulfur amino acid metabolic process;0.0123593716778947!GO:0006505;GPI anchor metabolic process;0.0127118460509545!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0130034149113608!GO:0006082;organic acid metabolic process;0.0132008442815268!GO:0046822;regulation of nucleocytoplasmic transport;0.0133722287487866!GO:0031529;ruffle organization and biogenesis;0.0135720484497089!GO:0031123;RNA 3'-end processing;0.0135720484497089!GO:0008180;signalosome;0.013589611531475!GO:0006354;RNA elongation;0.0141076834700265!GO:0006595;polyamine metabolic process;0.0141407869196696!GO:0008637;apoptotic mitochondrial changes;0.0145194572299699!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0145386216635607!GO:0003725;double-stranded RNA binding;0.0145509150656105!GO:0006769;nicotinamide metabolic process;0.014637744905631!GO:0008022;protein C-terminus binding;0.0150389895107758!GO:0008270;zinc ion binding;0.0151788644269526!GO:0044262;cellular carbohydrate metabolic process;0.0155342640249731!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0156684696661665!GO:0051098;regulation of binding;0.0158380100885503!GO:0008092;cytoskeletal protein binding;0.0159201357835296!GO:0009967;positive regulation of signal transduction;0.0160780097648723!GO:0006275;regulation of DNA replication;0.0162273055053203!GO:0032507;maintenance of cellular protein localization;0.0163008084460987!GO:0006611;protein export from nucleus;0.0167021258610125!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0169035368114809!GO:0015399;primary active transmembrane transporter activity;0.0169035368114809!GO:0006767;water-soluble vitamin metabolic process;0.0169035368114809!GO:0016301;kinase activity;0.0171476954082953!GO:0007021;tubulin folding;0.0172434732022425!GO:0006360;transcription from RNA polymerase I promoter;0.0193396867304112!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0199459377910109!GO:0005669;transcription factor TFIID complex;0.0207719708507257!GO:0030522;intracellular receptor-mediated signaling pathway;0.0211124388941882!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0211761955917569!GO:0006378;mRNA polyadenylation;0.021233991662172!GO:0004003;ATP-dependent DNA helicase activity;0.0216115521835311!GO:0000075;cell cycle checkpoint;0.0221817712003897!GO:0008017;microtubule binding;0.0224614681953231!GO:0000792;heterochromatin;0.0232531877194078!GO:0048468;cell development;0.0234752957467985!GO:0016311;dephosphorylation;0.0236560298111304!GO:0009303;rRNA transcription;0.0237093184324817!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0238295533433552!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0238295533433552!GO:0051325;interphase;0.0239235024814317!GO:0016126;sterol biosynthetic process;0.024097529825419!GO:0050790;regulation of catalytic activity;0.0243140535512045!GO:0045185;maintenance of protein localization;0.0243600663288847!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0247931093261587!GO:0006739;NADP metabolic process;0.0250217245831833!GO:0007052;mitotic spindle organization and biogenesis;0.0250414853010989!GO:0006417;regulation of translation;0.0251938536574925!GO:0007034;vacuolar transport;0.0251938536574925!GO:0007040;lysosome organization and biogenesis;0.0253122441488593!GO:0019362;pyridine nucleotide metabolic process;0.02541627143576!GO:0030833;regulation of actin filament polymerization;0.02541627143576!GO:0045792;negative regulation of cell size;0.0255638414391703!GO:0005862;muscle thin filament tropomyosin;0.0256245816506702!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0258303294395369!GO:0042026;protein refolding;0.0260621635031956!GO:0006509;membrane protein ectodomain proteolysis;0.0265809141997524!GO:0033619;membrane protein proteolysis;0.0265809141997524!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0268806392015594!GO:0051539;4 iron, 4 sulfur cluster binding;0.0272181234930992!GO:0008601;protein phosphatase type 2A regulator activity;0.0272181234930992!GO:0006818;hydrogen transport;0.027532845059045!GO:0030503;regulation of cell redox homeostasis;0.0277291175377367!GO:0008536;Ran GTPase binding;0.0281873579626283!GO:0008097;5S rRNA binding;0.0289263976393324!GO:0006749;glutathione metabolic process;0.0294195850963961!GO:0031461;cullin-RING ubiquitin ligase complex;0.0297853406649239!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0302434252628865!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0302787528482747!GO:0015992;proton transport;0.0307426443859504!GO:0004721;phosphoprotein phosphatase activity;0.0309277207551517!GO:0009081;branched chain family amino acid metabolic process;0.0309458349320638!GO:0032940;secretion by cell;0.0309680274658429!GO:0006144;purine base metabolic process;0.031204145520998!GO:0004527;exonuclease activity;0.0315347835509539!GO:0016408;C-acyltransferase activity;0.0316485195258931!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0319278047652107!GO:0007017;microtubule-based process;0.0323781559478801!GO:0006897;endocytosis;0.0323781559478801!GO:0010324;membrane invagination;0.0323781559478801!GO:0008610;lipid biosynthetic process;0.0324245754444683!GO:0051651;maintenance of cellular localization;0.0329587860226835!GO:0008047;enzyme activator activity;0.0332447478500622!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0332731545314937!GO:0051540;metal cluster binding;0.0334910799741696!GO:0051536;iron-sulfur cluster binding;0.0334910799741696!GO:0006984;ER-nuclear signaling pathway;0.0342518297967895!GO:0046519;sphingoid metabolic process;0.0342946745157928!GO:0030125;clathrin vesicle coat;0.0348055244395143!GO:0030665;clathrin coated vesicle membrane;0.0348055244395143!GO:0007088;regulation of mitosis;0.0348663110326889!GO:0043407;negative regulation of MAP kinase activity;0.0349472385844338!GO:0040008;regulation of growth;0.0350350528920702!GO:0006672;ceramide metabolic process;0.0353267215201569!GO:0032906;transforming growth factor-beta2 production;0.0356806503015793!GO:0032909;regulation of transforming growth factor-beta2 production;0.0356806503015793!GO:0032259;methylation;0.0356806503015793!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0357285305039892!GO:0015002;heme-copper terminal oxidase activity;0.0357285305039892!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0357285305039892!GO:0004129;cytochrome-c oxidase activity;0.0357285305039892!GO:0008287;protein serine/threonine phosphatase complex;0.035786949783017!GO:0000922;spindle pole;0.0358956067514427!GO:0030308;negative regulation of cell growth;0.0360836100349365!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0362087797731332!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0363559455450603!GO:0048146;positive regulation of fibroblast proliferation;0.0370432617955785!GO:0006607;NLS-bearing substrate import into nucleus;0.0375999973281157!GO:0007093;mitotic cell cycle checkpoint;0.0381187730917732!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0381648562491667!GO:0007030;Golgi organization and biogenesis;0.0384477396881254!GO:0019783;small conjugating protein-specific protease activity;0.0386725115712825!GO:0017134;fibroblast growth factor binding;0.0394898790028007!GO:0030031;cell projection biogenesis;0.0396365210301406!GO:0008629;induction of apoptosis by intracellular signals;0.0396365210301406!GO:0045334;clathrin-coated endocytic vesicle;0.0398974391263137!GO:0030433;ER-associated protein catabolic process;0.0401175067948623!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0401175067948623!GO:0042809;vitamin D receptor binding;0.040368036349815!GO:0016615;malate dehydrogenase activity;0.0407953494463413!GO:0051128;regulation of cellular component organization and biogenesis;0.0419169651141056!GO:0007406;negative regulation of neuroblast proliferation;0.0419417206933176!GO:0009893;positive regulation of metabolic process;0.0421527018800602!GO:0030119;AP-type membrane coat adaptor complex;0.0421851738056645!GO:0000775;chromosome, pericentric region;0.0431734692130805!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0431734692130805!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0431734692130805!GO:0006541;glutamine metabolic process;0.0432990685832606!GO:0009451;RNA modification;0.0434605160435067!GO:0000178;exosome (RNase complex);0.0434816629725277!GO:0009119;ribonucleoside metabolic process;0.0434816629725277!GO:0007041;lysosomal transport;0.0439891132428624!GO:0042770;DNA damage response, signal transduction;0.044392798548706!GO:0004300;enoyl-CoA hydratase activity;0.0446085340727271!GO:0031371;ubiquitin conjugating enzyme complex;0.0450015379912368!GO:0004185;serine carboxypeptidase activity;0.0450603625134049!GO:0043414;biopolymer methylation;0.0454759898464344!GO:0043281;regulation of caspase activity;0.0461979924302697!GO:0006643;membrane lipid metabolic process;0.0462624199069756!GO:0046128;purine ribonucleoside metabolic process;0.0468856285944894!GO:0042278;purine nucleoside metabolic process;0.0468856285944894!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.047304477962837!GO:0000209;protein polyubiquitination;0.0477091349786827!GO:0004680;casein kinase activity;0.0480454743938127!GO:0004177;aminopeptidase activity;0.0480454743938127!GO:0048144;fibroblast proliferation;0.0480454743938127!GO:0048145;regulation of fibroblast proliferation;0.0480454743938127!GO:0007265;Ras protein signal transduction;0.0481360602798344!GO:0007033;vacuole organization and biogenesis;0.0486670560896331!GO:0022890;inorganic cation transmembrane transporter activity;0.0491288557513949!GO:0032200;telomere organization and biogenesis;0.049220413758758!GO:0000723;telomere maintenance;0.049220413758758!GO:0006661;phosphatidylinositol biosynthetic process;0.0492706714225288!GO:0008538;proteasome activator activity;0.0492706714225288!GO:0004843;ubiquitin-specific protease activity;0.0493678366204845!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0493719263107374!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0496237887961014!GO:0000159;protein phosphatase type 2A complex;0.0496417957356874!GO:0050811;GABA receptor binding;0.0498114776801143 | |||
|sample_id=10433 | |sample_id=10433 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 98: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=HOXA9_MEIS1:1.41116619942;HOX{A6,A7,B6,B7}:1.21656420343;ZBTB16:0.957545227182;PITX1..3:0.934029632277;ALX1:0.920848776096;bHLH_family:0.918027893143;PDX1:0.840006342358;NKX2-1,4:0.830226182979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.815800536254;AIRE:0.794796870895;FOX{I1,J2}:0.757729901769;NKX3-1:0.757592557046;FOXP1:0.73006939045;HSF1,2:0.700692450543;PRRX1,2:0.651529649369;TBX4,5:0.640150086541;PATZ1:0.626080655753;TEF:0.620826659962;POU1F1:0.620157309425;PAX8:0.608807322678;ARID5B:0.60102215094;EGR1..3:0.592463666131;TP53:0.588851066327;ADNP_IRX_SIX_ZHX:0.553684921322;TFDP1:0.551686846134;ELK1,4_GABP{A,B1}:0.542734921639;EN1,2:0.506818262789;SP1:0.505147823628;NFE2:0.479069830598;NKX6-1,2:0.45354138292;MZF1:0.451934200587;ONECUT1,2:0.447912519435;FOXQ1:0.444810401403;STAT1,3:0.436024105393;TEAD1:0.430777422493;XCPE1{core}:0.407564573189;AHR_ARNT_ARNT2:0.401218799912;NR6A1:0.392855433396;ZFP161:0.385952553171;STAT5{A,B}:0.378043065786;CUX2:0.349091164283;NFE2L2:0.348085611916;TLX1..3_NFIC{dimer}:0.346226628335;BACH2:0.345211772311;FOS_FOS{B,L1}_JUN{B,D}:0.33764607838;BREu{core}:0.317545714772;LHX3,4:0.314727153672;RBPJ:0.30561986432;PAX5:0.295696283629;FOXN1:0.28835928079;YY1:0.287023632338;CRX:0.27361095084;ELF1,2,4:0.251581910624;RFX1:0.246271938075;CDX1,2,4:0.241623139553;MED-1{core}:0.234769940692;FOXA2:0.230036736769;ZNF143:0.225585497307;VSX1,2:0.223861576923;RREB1:0.217895086292;NANOG:0.194695034891;CDC5L:0.190145457238;ZEB1:0.187501043745;ATF2:0.168067914711;SPZ1:0.16139416385;SOX2:0.140979077927;ALX4:0.133304956062;NFIX:0.125362517149;MAZ:0.118303169385;SRF:0.104329395317;ATF5_CREB3:0.101046801015;NR1H4:0.0980348275324;PPARG:0.0973765448915;TOPORS:0.0881847396462;SOX17:0.0790623341722;LMO2:0.0769328818539;CEBPA,B_DDIT3:0.0706333046492;ZNF148:0.0588239700602;NKX2-2,8:0.0417422980635;HOX{A4,D4}:0.0338929514769;RXR{A,B,G}:0.0331097695853;HES1:0.018558318689;ETS1,2:0.0174601863133;E2F1..5:0.014695138877;GTF2A1,2:-0.000140750960414;HIC1:-0.013423188264;FOSL2:-0.014597837456;HOX{A5,B5}:-0.0191796228336;ZNF423:-0.0275403474191;ZBTB6:-0.0316790137931;NRF1:-0.0335827651126;MYOD1:-0.0399941316515;GTF2I:-0.0464062129582;HNF4A_NR2F1,2:-0.0488289568522;STAT2,4,6:-0.0537024045469;SNAI1..3:-0.0604750229299;HNF1A:-0.0610602354281;FOX{D1,D2}:-0.0795768010301;NKX3-2:-0.0853379831675;POU5F1:-0.0899707136214;FOX{F1,F2,J1}:-0.0908084667243;PRDM1:-0.0964794122236;ZIC1..3:-0.118229476269;MYB:-0.129214051207;PAX1,9:-0.135325390516;SREBF1,2:-0.14126469973;BPTF:-0.142701394415;PAX4:-0.147204873515;RFX2..5_RFXANK_RFXAP:-0.154626111843;MTF1:-0.163950728547;GATA4:-0.173181613976;DBP:-0.17921427368;PAX3,7:-0.180599586455;EBF1:-0.187872989105;EVI1:-0.194383650518;FOXP3:-0.203798763736;RUNX1..3:-0.209061000928;MEF2{A,B,C,D}:-0.214248033895;TFAP2B:-0.218776861693;HLF:-0.221910847853;ATF4:-0.224783049038;PBX1:-0.226336914792;CREB1:-0.227479727985;ZNF384:-0.229910723061;NFKB1_REL_RELA:-0.242299791324;TFAP2{A,C}:-0.246595031389;TFCP2:-0.25482046816;NFATC1..3:-0.261174633621;SPIB:-0.267861291132;SOX{8,9,10}:-0.280780519779;REST:-0.286504900444;ESR1:-0.296582466467;PAX2:-0.302983892745;FOXD3:-0.305352355918;KLF4:-0.32156367007;HIF1A:-0.32467103599;IRF7:-0.325461357153;NR5A1,2:-0.327306912942;HBP1_HMGB_SSRP1_UBTF:-0.331237019165;GZF1:-0.332857135207;NFY{A,B,C}:-0.33607536792;MYBL2:-0.337242327273;SPI1:-0.388077075832;GATA6:-0.400886901141;FOXL1:-0.401366542742;NKX2-3_NKX2-5:-0.401682177242;NR3C1:-0.416534996072;NHLH1,2:-0.423741140725;HMGA1,2:-0.436463613983;LEF1_TCF7_TCF7L1,2:-0.446021595882;MAFB:-0.461155313393;FOXM1:-0.464762391642;T:-0.499605569847;TLX2:-0.502734909261;TFAP4:-0.504887617892;IKZF1:-0.5080823817;RXRA_VDR{dimer}:-0.520321427797;OCT4_SOX2{dimer}:-0.522969451919;IRF1,2:-0.532436799728;NFIL3:-0.533647083477;UFEwm:-0.536230681322;NFE2L1:-0.542462277859;TGIF1:-0.545651941149;GFI1:-0.548944843188;POU6F1:-0.554262752134;POU2F1..3:-0.57702971619;HAND1,2:-0.577351034052;SOX5:-0.584175115893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.603925558513;RORA:-0.608058224504;EP300:-0.623874864646;ATF6:-0.634681782125;MYFfamily:-0.634726363656;JUN:-0.674867614485;POU3F1..4:-0.697749553207;AR:-0.706677603247;IKZF2:-0.708353523705;TAL1_TCF{3,4,12}:-0.714651982736;TBP:-0.7265118908;DMAP1_NCOR{1,2}_SMARC:-0.727692320014;MTE{core}:-0.747218337054;ESRRA:-0.780903811307;GFI1B:-0.794324260777;GLI1..3:-0.818493087544;XBP1:-0.893425677707;GCM1,2:-0.898326722977;FOXO1,3,4:-0.908232523154;ZNF238:-1.09041505637;PAX6:-1.17686908515;NANOG{mouse}:-1.39254800838;HMX1:-1.46334524199;SMAD1..7,9:-1.84629647787 | |top_motifs=HOXA9_MEIS1:1.41116619942;HOX{A6,A7,B6,B7}:1.21656420343;ZBTB16:0.957545227182;PITX1..3:0.934029632277;ALX1:0.920848776096;bHLH_family:0.918027893143;PDX1:0.840006342358;NKX2-1,4:0.830226182979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.815800536254;AIRE:0.794796870895;FOX{I1,J2}:0.757729901769;NKX3-1:0.757592557046;FOXP1:0.73006939045;HSF1,2:0.700692450543;PRRX1,2:0.651529649369;TBX4,5:0.640150086541;PATZ1:0.626080655753;TEF:0.620826659962;POU1F1:0.620157309425;PAX8:0.608807322678;ARID5B:0.60102215094;EGR1..3:0.592463666131;TP53:0.588851066327;ADNP_IRX_SIX_ZHX:0.553684921322;TFDP1:0.551686846134;ELK1,4_GABP{A,B1}:0.542734921639;EN1,2:0.506818262789;SP1:0.505147823628;NFE2:0.479069830598;NKX6-1,2:0.45354138292;MZF1:0.451934200587;ONECUT1,2:0.447912519435;FOXQ1:0.444810401403;STAT1,3:0.436024105393;TEAD1:0.430777422493;XCPE1{core}:0.407564573189;AHR_ARNT_ARNT2:0.401218799912;NR6A1:0.392855433396;ZFP161:0.385952553171;STAT5{A,B}:0.378043065786;CUX2:0.349091164283;NFE2L2:0.348085611916;TLX1..3_NFIC{dimer}:0.346226628335;BACH2:0.345211772311;FOS_FOS{B,L1}_JUN{B,D}:0.33764607838;BREu{core}:0.317545714772;LHX3,4:0.314727153672;RBPJ:0.30561986432;PAX5:0.295696283629;FOXN1:0.28835928079;YY1:0.287023632338;CRX:0.27361095084;ELF1,2,4:0.251581910624;RFX1:0.246271938075;CDX1,2,4:0.241623139553;MED-1{core}:0.234769940692;FOXA2:0.230036736769;ZNF143:0.225585497307;VSX1,2:0.223861576923;RREB1:0.217895086292;NANOG:0.194695034891;CDC5L:0.190145457238;ZEB1:0.187501043745;ATF2:0.168067914711;SPZ1:0.16139416385;SOX2:0.140979077927;ALX4:0.133304956062;NFIX:0.125362517149;MAZ:0.118303169385;SRF:0.104329395317;ATF5_CREB3:0.101046801015;NR1H4:0.0980348275324;PPARG:0.0973765448915;TOPORS:0.0881847396462;SOX17:0.0790623341722;LMO2:0.0769328818539;CEBPA,B_DDIT3:0.0706333046492;ZNF148:0.0588239700602;NKX2-2,8:0.0417422980635;HOX{A4,D4}:0.0338929514769;RXR{A,B,G}:0.0331097695853;HES1:0.018558318689;ETS1,2:0.0174601863133;E2F1..5:0.014695138877;GTF2A1,2:-0.000140750960414;HIC1:-0.013423188264;FOSL2:-0.014597837456;HOX{A5,B5}:-0.0191796228336;ZNF423:-0.0275403474191;ZBTB6:-0.0316790137931;NRF1:-0.0335827651126;MYOD1:-0.0399941316515;GTF2I:-0.0464062129582;HNF4A_NR2F1,2:-0.0488289568522;STAT2,4,6:-0.0537024045469;SNAI1..3:-0.0604750229299;HNF1A:-0.0610602354281;FOX{D1,D2}:-0.0795768010301;NKX3-2:-0.0853379831675;POU5F1:-0.0899707136214;FOX{F1,F2,J1}:-0.0908084667243;PRDM1:-0.0964794122236;ZIC1..3:-0.118229476269;MYB:-0.129214051207;PAX1,9:-0.135325390516;SREBF1,2:-0.14126469973;BPTF:-0.142701394415;PAX4:-0.147204873515;RFX2..5_RFXANK_RFXAP:-0.154626111843;MTF1:-0.163950728547;GATA4:-0.173181613976;DBP:-0.17921427368;PAX3,7:-0.180599586455;EBF1:-0.187872989105;EVI1:-0.194383650518;FOXP3:-0.203798763736;RUNX1..3:-0.209061000928;MEF2{A,B,C,D}:-0.214248033895;TFAP2B:-0.218776861693;HLF:-0.221910847853;ATF4:-0.224783049038;PBX1:-0.226336914792;CREB1:-0.227479727985;ZNF384:-0.229910723061;NFKB1_REL_RELA:-0.242299791324;TFAP2{A,C}:-0.246595031389;TFCP2:-0.25482046816;NFATC1..3:-0.261174633621;SPIB:-0.267861291132;SOX{8,9,10}:-0.280780519779;REST:-0.286504900444;ESR1:-0.296582466467;PAX2:-0.302983892745;FOXD3:-0.305352355918;KLF4:-0.32156367007;HIF1A:-0.32467103599;IRF7:-0.325461357153;NR5A1,2:-0.327306912942;HBP1_HMGB_SSRP1_UBTF:-0.331237019165;GZF1:-0.332857135207;NFY{A,B,C}:-0.33607536792;MYBL2:-0.337242327273;SPI1:-0.388077075832;GATA6:-0.400886901141;FOXL1:-0.401366542742;NKX2-3_NKX2-5:-0.401682177242;NR3C1:-0.416534996072;NHLH1,2:-0.423741140725;HMGA1,2:-0.436463613983;LEF1_TCF7_TCF7L1,2:-0.446021595882;MAFB:-0.461155313393;FOXM1:-0.464762391642;T:-0.499605569847;TLX2:-0.502734909261;TFAP4:-0.504887617892;IKZF1:-0.5080823817;RXRA_VDR{dimer}:-0.520321427797;OCT4_SOX2{dimer}:-0.522969451919;IRF1,2:-0.532436799728;NFIL3:-0.533647083477;UFEwm:-0.536230681322;NFE2L1:-0.542462277859;TGIF1:-0.545651941149;GFI1:-0.548944843188;POU6F1:-0.554262752134;POU2F1..3:-0.57702971619;HAND1,2:-0.577351034052;SOX5:-0.584175115893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.603925558513;RORA:-0.608058224504;EP300:-0.623874864646;ATF6:-0.634681782125;MYFfamily:-0.634726363656;JUN:-0.674867614485;POU3F1..4:-0.697749553207;AR:-0.706677603247;IKZF2:-0.708353523705;TAL1_TCF{3,4,12}:-0.714651982736;TBP:-0.7265118908;DMAP1_NCOR{1,2}_SMARC:-0.727692320014;MTE{core}:-0.747218337054;ESRRA:-0.780903811307;GFI1B:-0.794324260777;GLI1..3:-0.818493087544;XBP1:-0.893425677707;GCM1,2:-0.898326722977;FOXO1,3,4:-0.908232523154;ZNF238:-1.09041505637;PAX6:-1.17686908515;NANOG{mouse}:-1.39254800838;HMX1:-1.46334524199;SMAD1..7,9:-1.84629647787 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10433-106E1;search_select_hide=table117:FF:10433-106E1 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | giant cell carcinoma cell line:Lu99B |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10751 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10751
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10751
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.743 |
| 10 | 10 | 0.994 |
| 100 | 100 | 0.661 |
| 101 | 101 | 0.835 |
| 102 | 102 | 0.63 |
| 103 | 103 | 0.0869 |
| 104 | 104 | 0.683 |
| 105 | 105 | 0.803 |
| 106 | 106 | 0.481 |
| 107 | 107 | 0.575 |
| 108 | 108 | 0.952 |
| 109 | 109 | 0.804 |
| 11 | 11 | 0.275 |
| 110 | 110 | 0.773 |
| 111 | 111 | 0.623 |
| 112 | 112 | 0.128 |
| 113 | 113 | 0.106 |
| 114 | 114 | 0.357 |
| 115 | 115 | 0.136 |
| 116 | 116 | 0.181 |
| 117 | 117 | 0.129 |
| 118 | 118 | 0.285 |
| 119 | 119 | 0.54 |
| 12 | 12 | 0.756 |
| 120 | 120 | 0.48 |
| 121 | 121 | 0.777 |
| 122 | 122 | 0.673 |
| 123 | 123 | 0.43 |
| 124 | 124 | 0.743 |
| 125 | 125 | 0.232 |
| 126 | 126 | 0.433 |
| 127 | 127 | 0.321 |
| 128 | 128 | 0.0346 |
| 129 | 129 | 0.837 |
| 13 | 13 | 0.356 |
| 130 | 130 | 0.455 |
| 131 | 131 | 0.415 |
| 132 | 132 | 0.742 |
| 133 | 133 | 0.0458 |
| 134 | 134 | 0.471 |
| 135 | 135 | 0.00324 |
| 136 | 136 | 0.201 |
| 137 | 137 | 0.614 |
| 138 | 138 | 0.935 |
| 139 | 139 | 0.621 |
| 14 | 14 | 0.986 |
| 140 | 140 | 0.0705 |
| 141 | 141 | 0.631 |
| 142 | 142 | 0.00707 |
| 143 | 143 | 0.118 |
| 144 | 144 | 0.357 |
| 145 | 145 | 0.792 |
| 146 | 146 | 0.324 |
| 147 | 147 | 0.465 |
| 148 | 148 | 0.107 |
| 149 | 149 | 0.0387 |
| 15 | 15 | 0.933 |
| 150 | 150 | 0.481 |
| 151 | 151 | 0.402 |
| 152 | 152 | 0.424 |
| 153 | 153 | 0.833 |
| 154 | 154 | 0.391 |
| 155 | 155 | 0.418 |
| 156 | 156 | 0.919 |
| 157 | 157 | 0.354 |
| 158 | 158 | 0.503 |
| 159 | 159 | 0.918 |
| 16 | 16 | 0.165 |
| 160 | 160 | 0.771 |
| 161 | 161 | 0.686 |
| 162 | 162 | 0.556 |
| 163 | 163 | 0.741 |
| 164 | 164 | 0.367 |
| 165 | 165 | 0.768 |
| 166 | 166 | 0.75 |
| 167 | 167 | 0.245 |
| 168 | 168 | 0.497 |
| 169 | 169 | 0.714 |
| 17 | 17 | 0.942 |
| 18 | 18 | 0.218 |
| 19 | 19 | 0.0839 |
| 2 | 2 | 0.199 |
| 20 | 20 | 0.0167 |
| 21 | 21 | 0.398 |
| 22 | 22 | 0.958 |
| 23 | 23 | 0.15 |
| 24 | 24 | 0.388 |
| 25 | 25 | 0.0703 |
| 26 | 26 | 0.0645 |
| 27 | 27 | 0.0115 |
| 28 | 28 | 0.356 |
| 29 | 29 | 0.986 |
| 3 | 3 | 0.945 |
| 30 | 30 | 0.807 |
| 31 | 31 | 0.344 |
| 32 | 32 | 1.4571e-5 |
| 33 | 33 | 0.163 |
| 34 | 34 | 0.518 |
| 35 | 35 | 0.234 |
| 36 | 36 | 0.708 |
| 37 | 37 | 0.53 |
| 38 | 38 | 0.927 |
| 39 | 39 | 0.957 |
| 4 | 4 | 0.624 |
| 40 | 40 | 0.461 |
| 41 | 41 | 0.0662 |
| 42 | 42 | 0.692 |
| 43 | 43 | 0.0432 |
| 44 | 44 | 0.399 |
| 45 | 45 | 0.845 |
| 46 | 46 | 0.11 |
| 47 | 47 | 0.975 |
| 48 | 48 | 0.734 |
| 49 | 49 | 0.348 |
| 5 | 5 | 0.174 |
| 50 | 50 | 0.048 |
| 51 | 51 | 0.901 |
| 52 | 52 | 0.572 |
| 53 | 53 | 0.646 |
| 54 | 54 | 0.6 |
| 55 | 55 | 0.843 |
| 56 | 56 | 0.758 |
| 57 | 57 | 0.436 |
| 58 | 58 | 0.128 |
| 59 | 59 | 0.00998 |
| 6 | 6 | 0.742 |
| 60 | 60 | 0.22 |
| 61 | 61 | 0.0941 |
| 62 | 62 | 0.0114 |
| 63 | 63 | 0.496 |
| 64 | 64 | 0.118 |
| 65 | 65 | 0.128 |
| 66 | 66 | 0.407 |
| 67 | 67 | 0.28 |
| 68 | 68 | 0.158 |
| 69 | 69 | 0.723 |
| 7 | 7 | 0.226 |
| 70 | 70 | 0.959 |
| 71 | 71 | 0.121 |
| 72 | 72 | 0.757 |
| 73 | 73 | 0.685 |
| 74 | 74 | 0.84 |
| 75 | 75 | 0.524 |
| 76 | 76 | 0.269 |
| 77 | 77 | 0.738 |
| 78 | 78 | 0.975 |
| 79 | 79 | 0.0481 |
| 8 | 8 | 0.412 |
| 80 | 80 | 0.491 |
| 81 | 81 | 0.045 |
| 82 | 82 | 0.178 |
| 83 | 83 | 0.656 |
| 84 | 84 | 0.374 |
| 85 | 85 | 0.0017 |
| 86 | 86 | 0.291 |
| 87 | 87 | 0.139 |
| 88 | 88 | 0.502 |
| 89 | 89 | 0.548 |
| 9 | 9 | 0.175 |
| 90 | 90 | 0.663 |
| 91 | 91 | 0.0187 |
| 92 | 92 | 0.785 |
| 93 | 93 | 0.295 |
| 94 | 94 | 0.107 |
| 95 | 95 | 0.362 |
| 96 | 96 | 0.236 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.517 |
| 99 | 99 | 0.249 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10751
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102411 giant cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102411 (giant cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
