FF:10435-106E3: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	Hodgkin's lymphoma cell line:HD-Mar2
Species:	Human (Homo sapiens)
Library ID:	CNhs11715
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	unknown
age	NA
cell type	lymphocyte
cell line	HD-Mar2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004765

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11715		CAGE		DRX007791		DRR008663

Accession ID Hg19

Library id		BAM		CTSS
CNhs11715		DRZ000088		DRZ001473

Accession ID Hg38

Library id		BAM		CTSS
CNhs11715		DRZ011438		DRZ012823

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0581
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.795
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.127
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	1.03
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.123
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.107
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.119
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00893
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.286
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.101
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.159
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.848
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0657
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0351
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.485
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11715

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0626
MA0003.1	MA0003.1	0.502
MA0004.1	MA0004.1	0.474
MA0006.1	MA0006.1	0.164
MA0007.1	MA0007.1	0.635
MA0009.1	MA0009.1	0.847
MA0014.1	MA0014.1	0.612
MA0017.1	MA0017.1	0.592
MA0018.2	MA0018.2	0.147
MA0019.1	MA0019.1	0.235
MA0024.1	MA0024.1	2.94306e-11
MA0025.1	MA0025.1	0.488
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	8.5861e-8
MA0029.1	MA0029.1	1
MA0030.1	MA0030.1	0.22
MA0031.1	MA0031.1	0.831
MA0035.2	MA0035.2	0.109
MA0038.1	MA0038.1	0.129
MA0039.2	MA0039.2	0.236
MA0040.1	MA0040.1	0.261
MA0041.1	MA0041.1	0.318
MA0042.1	MA0042.1	0.501
MA0043.1	MA0043.1	0.94
MA0046.1	MA0046.1	0.147
MA0047.2	MA0047.2	0.761
MA0048.1	MA0048.1	0.308
MA0050.1	MA0050.1	0.269
MA0051.1	MA0051.1	0.173
MA0052.1	MA0052.1	0.0655
MA0055.1	MA0055.1	0.169
MA0057.1	MA0057.1	0.542
MA0058.1	MA0058.1	0.324
MA0059.1	MA0059.1	0.115
MA0060.1	MA0060.1	1.49736e-16
MA0061.1	MA0061.1	0.521
MA0062.2	MA0062.2	2.58469e-14
MA0065.2	MA0065.2	0.8
MA0066.1	MA0066.1	0.805
MA0067.1	MA0067.1	0.834
MA0068.1	MA0068.1	0.447
MA0069.1	MA0069.1	0.628
MA0070.1	MA0070.1	0.228
MA0071.1	MA0071.1	0.43
MA0072.1	MA0072.1	0.134
MA0073.1	MA0073.1	0.944
MA0074.1	MA0074.1	0.562
MA0076.1	MA0076.1	3.32962e-13
MA0077.1	MA0077.1	0.897
MA0078.1	MA0078.1	0.465
MA0079.2	MA0079.2	0.19
MA0080.2	MA0080.2	0.0561
MA0081.1	MA0081.1	0.102
MA0083.1	MA0083.1	0.00251
MA0084.1	MA0084.1	0.304
MA0087.1	MA0087.1	0.348
MA0088.1	MA0088.1	6.01992e-4
MA0090.1	MA0090.1	4.49821e-4
MA0091.1	MA0091.1	0.526
MA0092.1	MA0092.1	0.531
MA0093.1	MA0093.1	0.432
MA0099.2	MA0099.2	1.02234e-15
MA0100.1	MA0100.1	0.00251
MA0101.1	MA0101.1	0.209
MA0102.2	MA0102.2	0.00232
MA0103.1	MA0103.1	0.42
MA0104.2	MA0104.2	0.00567
MA0105.1	MA0105.1	0.306
MA0106.1	MA0106.1	0.658
MA0107.1	MA0107.1	0.0423
MA0108.2	MA0108.2	8.62064e-7
MA0111.1	MA0111.1	0.0988
MA0112.2	MA0112.2	0.326
MA0113.1	MA0113.1	0.246
MA0114.1	MA0114.1	0.866
MA0115.1	MA0115.1	0.213
MA0116.1	MA0116.1	0.0602
MA0117.1	MA0117.1	0.707
MA0119.1	MA0119.1	0.741
MA0122.1	MA0122.1	0.972
MA0124.1	MA0124.1	0.815
MA0125.1	MA0125.1	0.975
MA0131.1	MA0131.1	0.0146
MA0135.1	MA0135.1	0.0523
MA0136.1	MA0136.1	3.79632e-7
MA0137.2	MA0137.2	0.293
MA0138.2	MA0138.2	0.475
MA0139.1	MA0139.1	0.51
MA0140.1	MA0140.1	0.135
MA0141.1	MA0141.1	0.743
MA0142.1	MA0142.1	0.656
MA0143.1	MA0143.1	0.0512
MA0144.1	MA0144.1	0.0213
MA0145.1	MA0145.1	0.0345
MA0146.1	MA0146.1	0.69
MA0147.1	MA0147.1	0.00321
MA0148.1	MA0148.1	0.405
MA0149.1	MA0149.1	0.132
MA0150.1	MA0150.1	0.00553
MA0152.1	MA0152.1	0.13
MA0153.1	MA0153.1	0.0926
MA0154.1	MA0154.1	0.988
MA0155.1	MA0155.1	0.465
MA0156.1	MA0156.1	3.87494e-10
MA0157.1	MA0157.1	0.779
MA0159.1	MA0159.1	0.92
MA0160.1	MA0160.1	0.607
MA0162.1	MA0162.1	0.485
MA0163.1	MA0163.1	0.00198
MA0164.1	MA0164.1	0.607
MA0258.1	MA0258.1	0.916
MA0259.1	MA0259.1	0.0244

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11715

Novel motif	Logo	P-value
1	1	0.214
10	10	0.0442
100	100	0.289
101	101	0.337
102	102	0.526
103	103	0.626
104	104	0.673
105	105	0.667
106	106	0.0711
107	107	0.029
108	108	0.22
109	109	0.545
11	11	0.431
110	110	0.839
111	111	0.33
112	112	0.372
113	113	0.54
114	114	0.465
115	115	0.881
116	116	0.688
117	117	0.0578
118	118	0.91
119	119	0.352
12	12	0.542
120	120	0.841
121	121	0.811
122	122	0.848
123	123	0.00206
124	124	0.0558
125	125	0.255
126	126	0.855
127	127	0.492
128	128	0.037
129	129	0.775
13	13	0.246
130	130	0.159
131	131	0.887
132	132	0.51
133	133	0.589
134	134	0.369
135	135	0.42
136	136	0.587
137	137	0.632
138	138	0.854
139	139	0.686
14	14	0.894
140	140	0.719
141	141	0.61
142	142	0.863
143	143	0.135
144	144	0.907
145	145	0.766
146	146	0.628
147	147	0.147
148	148	0.827
149	149	0.0579
15	15	0.516
150	150	0.993
151	151	0.399
152	152	0.00738
153	153	0.841
154	154	1
155	155	0.152
156	156	0.695
157	157	0.173
158	158	0.821
159	159	0.123
16	16	0.359
160	160	0.848
161	161	0.32
162	162	0.644
163	163	0.315
164	164	0.682
165	165	0.899
166	166	0.439
167	167	0.0508
168	168	0.0922
169	169	0.0949
17	17	0.243
18	18	0.44
19	19	0.0831
2	2	0.187
20	20	0.476
21	21	0.256
22	22	0.219
23	23	0.00843
24	24	0.954
25	25	0.205
26	26	0.242
27	27	0.894
28	28	0.558
29	29	0.0772
3	3	0.608
30	30	0.0825
31	31	0.378
32	32	0.0396
33	33	0.977
34	34	0.188
35	35	0.0942
36	36	0.0829
37	37	0.864
38	38	0.99
39	39	0.0723
4	4	0.122
40	40	0.895
41	41	0.555
42	42	0.193
43	43	0.741
44	44	0.547
45	45	0.173
46	46	0.442
47	47	0.071
48	48	0.509
49	49	0.468
5	5	0.837
50	50	0.502
51	51	0.599
52	52	0.0199
53	53	0.65
54	54	0.345
55	55	0.269
56	56	0.79
57	57	0.58
58	58	0.627
59	59	0.23
6	6	0.485
60	60	0.16
61	61	0.27
62	62	0.742
63	63	0.987
64	64	0.636
65	65	0.471
66	66	0.0218
67	67	0.619
68	68	0.209
69	69	0.747
7	7	0.35
70	70	0.655
71	71	0.173
72	72	0.826
73	73	0.057
74	74	0.32
75	75	0.135
76	76	0.634
77	77	0.0359
78	78	0.538
79	79	0.0324
8	8	0.854
80	80	0.515
81	81	0.704
82	82	0.711
83	83	0.77
84	84	0.711
85	85	0.026
86	86	0.621
87	87	0.397
88	88	0.786
89	89	0.0422
9	9	0.434
90	90	0.395
91	91	0.551
92	92	0.19
93	93	0.881
94	94	0.287
95	95	0.512
96	96	0.377
97	97	0.219
98	98	0.986
99	99	0.167

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11715

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104973 Hodgkin lymphoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104973 (Hodgkin lymphoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004765
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000037,CL:0000566
+|accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473;DRZ011438;DRZ012823
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104,FF:0104973
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.54!346.55!TCF7;;chr9:77112244..77112262,+!p1@RORB!2.18!165.55!RORB;;chr8:60031619..60031676,-!p1@TOX!2.07!242.80!TOX;;chr1:23857698..23857733,-!p1@E2F2!1.88!133.32!E2F2;;chr6:135502408..135502459,+!p2@MYB!1.83!76.37!MYB;;chr4:109090075..109090095,-!p2@LEF1!1.81!63.57!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.79!266.20!TCF7;;chr2:214014959..214015006,-!p4@IKZF2!1.79!60.48!IKZF2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.77!57.83!POU3F3;;chr6:135502501..135502546,+!p1@MYB!1.72!61.36!MYB;;chr10:8096772..8096787,+!p2@GATA3!1.59!44.15!GATA3;;chr3:141868293..141868355,-!p2@TFDP2!1.55!287.39!TFDP2;;chr2:214015111..214015179,-!p1@IKZF2!1.54!59.60!IKZF2;;chr1:935467..935484,-!p1@HES4!1.52!138.18!HES4;;chr21:47063625..47063658,+!p1@PCBP3!1.50!129.35!PCBP3;;chr1:151798546..151798590,-!p2@RORC!1.50!30.46!RORC;;chr5:133451347..133451358,+!p3@TCF7!1.50!30.46!TCF7;;chr4:109087445..109087463,-!p1@LEF1!1.47!28.70!LEF1;;chr14:37131058..37131139,+!p1@PAX9!1.45!26.93!PAX9;;chr3:141747459..141747475,-!p1@TFDP2!1.44!210.58!TFDP2;;chr21:36421535..36421610,-!p2@RUNX1!1.44!92.71!RUNX1;;chr2:102091566..102091581,-!p1@RFX8!1.43!26.05!RFX8;;chr1:92949331..92949377,-!p2@GFI1!1.42!25.16!GFI1;;chr3:63953435..63953499,+!p1@ATXN7!1.41!24.72!ATXN7;;chr13:74708029..74708077,-!p2@KLF12!1.39!65.34!KLF12;;chr5:176738887..176738934,-!p1@MXD3!1.36!143.03!MXD3;;chr7:50343634..50343717,+!p2@IKZF1!1.36!22.07!IKZF1;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.51!GATA3;;chr20:32274179..32274213,-!p1@E2F1!1.28!116.10!E2F1;;chr8:60031682..60031710,-!p2@TOX!1.26!27.81!TOX;;chr7:50344251..50344288,+!p3@IKZF1!1.26!17.22!IKZF1;;chr10:8095593..8095625,+!p3@GATA3!1.24!19.42!GATA3;;chr7:50343895..50343936,+!p5@IKZF1!1.22!15.45!IKZF1;;chr2:60778035..60778060,-!p4@BCL11A!1.21!18.10!BCL11A;;chr2:100759037..100759058,-!p2@AFF3!1.20!15.01!AFF3;;chr2:214015343..214015366,-!p3@IKZF2!1.19!14.57!IKZF2;;chr17:42295777..42295816,-!p7@UBTF!1.18!17.22!UBTF;;chr14:99738138..99738163,-!p1@BCL11B!1.18!14.13!BCL11B;;chr8:60031563..60031574,-!p7@TOX!1.18!14.13!TOX;;chr1:23857674..23857685,-!p3@E2F2!1.18!14.13!E2F2;;chr8:60031534..60031553,-!p8@TOX!1.17!13.69!TOX;;chr2:100759010..100759035,-!p1@AFF3!1.17!13.69!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.69!KDM5D;;chr19:20959098..20959117,+!p1@ZNF66P!1.16!55.62!ZNF66P;;chr9:117150254..117150271,-!p1@AKNA!1.16!36.64!AKNA;;chr19:22034809..22034878,-!p2@ZNF43!1.15!46.35!ZNF43;;chr19:19779619..19779670,+!p1@ZNF101!1.15!37.08!ZNF101;;chr6:20402102..20402152,+!p1@E2F3!1.14!52.09!E2F3;;chr6:91006518..91006570,-!p1@BACH2!1.14!29.58!BACH2;;chr19:20011775..20011800,+!p2@ZNF93!1.14!22.96!ZNF93;;chr19:12163769..12163798,-!p1@ZNF878!1.14!16.78!ZNF878;;chr4:109089901..109089930,-!p3@LEF1!1.14!12.80!LEF1;;chr6:21593973..21593988,+!p1@SOX4!1.13!442.79!SOX4;;chr20:42295713..42295738,+!p2@MYBL2!1.13!73.28!MYBL2;;chr12:24715376..24715432,-!p1@SOX5!1.13!15.89!SOX5;;chr4:109090054..109090073,-!p7@LEF1!1.13!12.36!LEF1;;chr20:42295745..42295765,+!p1@MYBL2!1.12!199.10!MYBL2;;chr5:133450458..133450469,+!p4@TCF7!1.11!11.92!TCF7;;chr2:214013461..214013517,-!p6@IKZF2!1.10!11.48!IKZF2;;chr17:38020392..38020477,-!p1@IKZF3!1.10!11.48!IKZF3;;chr15:57210961..57211012,+!p3@TCF12!1.08!35.76!TCF12;;chr2:60780607..60780624,-!p2@BCL11A!1.07!33.55!BCL11A;;chr19:20150268..20150298,-!p2@ZNF682!1.06!19.87!ZNF682;;chr17:42295682..42295731,-!p17@UBTF!1.06!10.60!UBTF;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.60!GFI1;;chr2:42721205..42721307,+!p4@MTA3!1.05!10.15!MTA3;;chr7:50344289..50344323,+!p1@IKZF1!1.05!10.15!IKZF1;;chr20:32274150..32274166,-!p2@E2F1!1.03!18.54!E2F1;;chr3:141820622..141820635,-!p5@TFDP2!1.03!17.66!TFDP2;;chr14:99737850..99737852,-!p3@BCL11B!1.03!9.71!BCL11B;;chr17:37934204..37934241,-!p3@IKZF3!1.03!9.71!IKZF3;;chr1:158978768..158978800,+!p8@IFI16!1.03!9.71!IFI16;;chr2:60781201..60781258,-!p3@BCL11A!1.01!9.27!BCL11A;;chr4:109089996..109090012,-!p5@LEF1!1.01!9.27!LEF1;;chr1:247171316..247171336,-!p3@ZNF695!1.00!13.69!ZNF695;;chr21:36421147..36421193,-!p10@RUNX1!0.99!8.83!RUNX1;;chr3:141747950..141748004,-!p7@TFDP2!0.99!8.83!TFDP2;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.83!IKZF3;;chr7:50348268..50348366,+!p4@IKZF1!0.99!8.83!IKZF1;;chr19:19729477..19729542,-!p1@PBX4!0.98!18.54!PBX4;;chr1:93544791..93544807,+!p2@MTF2!0.98!13.24!MTF2;;chr19:21264991..21265026,+!p1@ZNF714!0.97!55.62!ZNF714;;chr1:935398..935465,-!p2@HES4!0.97!17.66!HES4;;chr19:11750566..11750627,+!p1@ZNF833P!0.97!11.48!ZNF833P;;chrX:131624056..131624069,-!p2@MBNL3!0.97!11.48!MBNL3;;chr4:109087906..109087928,-!p12@LEF1!0.97!8.39!LEF1;;chr16:68119324..68119364,+!p1@NFATC3!0.96!37.08!NFATC3;;chr13:41593425..41593480,-!p1@ELF1!0.95!52.53!ELF1;;chr19:20011744..20011770,+!p1@ZNF93!0.95!31.34!ZNF93;;chr7:64126535..64126559,+!p2@ZNF107!0.95!17.22!ZNF107;;chr2:214016254..214016282,-!p7@IKZF2!0.95!7.95!IKZF2;;chr3:141747441..141747452,-!p4@TFDP2!0.94!11.04!TFDP2;;chr3:18486354..18486377,-!p2@SATB1!0.94!9.71!SATB1;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.57!SOX4;;chr8:145669791..145669834,-!p1@TONSL!0.93!22.51!TONSL;;chr21:34144115..34144138,-!p2@GCFC1!0.93!22.51!GCFC1;;chr4:109090106..109090124,-!p10@LEF1!0.93!7.50!LEF1;;chr18:76739816..76739822,+!p1@SALL3!0.93!7.50!SALL3;;chr7:64126503..64126528,+!p1@ZNF107!0.92!54.30!ZNF107;;chr19:23433144..23433204,-!p1@ZNF724P!0.92!33.99!ZNF724P;;chr19:20188776..20188826,+!p1@ZNF90!0.92!20.31!ZNF90;;chr19:21579908..21579949,+!p1@ZNF493!0.91!45.03!ZNF493;;chr19:21106049..21106072,+!p1@ZNF85!0.91!40.61!ZNF85;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.91!33.99!TAL1;;chr7:64023410..64023428,-!p2@ZNF680!0.91!11.48!ZNF680;;chr19:23299814..23299844,+!p1@ZNF730!0.91!8.83!ZNF730;;chr15:76629123..76629151,+!p1@ISL2!0.91!7.95!ISL2;;chr5:133477905..133477956,+!p5@TCF7!0.91!7.06!TCF7;;chr7:44143925..44143970,+!p1@AEBP1!0.90!164.22!AEBP1;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.49!BRCA1;;chr19:19976683..19976709,+!p1@ZNF253!0.89!31.34!ZNF253;;chr19:19976714..19976729,+!p3@ZNF253!0.89!13.24!ZNF253;;chr1:151032922..151032951,+!p2@MLLT11!0.89!11.48!MLLT11;;chr19:20278012..20278034,+!p1@ZNF486!0.88!58.27!ZNF486;;chr7:148581360..148581425,-!p1@EZH2!0.88!34.43!EZH2;;chr8:80679993..80680011,-!p1@HEY1!0.88!9.71!HEY1;;chr6:135502472..135502489,+!p3@MYB!0.88!6.62!MYB;;chr13:41593493..41593506,-!p8@ELF1!0.88!6.62!ELF1;;chr6:31126291..31126399,+!p1@TCF19!0.87!64.01!TCF19;;chr19:12551785..12551823,-!p1@ZNF443!0.87!10.60!ZNF443;;chr11:128392273..128392308,-!p2@ETS1!0.86!28.25!ETS1;;chr20:47894936..47895010,-!p2@ZNFX1!0.86!21.19!ZNFX1;;chr8:28748099..28748141,+!p2@HMBOX1!0.86!20.31!HMBOX1;;chr19:12444440..12444455,-!p1@ZNF563!0.86!11.04!ZNF563;;chr19:20959142..20959151,+!p2@ZNF66P!0.86!6.18!ZNF66P;;chr12:77459306..77459365,-!p1@E2F7!0.85!81.23!E2F7;;chr3:141868357..141868393,-!p3@TFDP2!0.85!42.38!TFDP2;;chr8:145980968..145980996,-!p2@ZNF251!0.85!9.27!ZNF251;;chr15:56535468..56535521,-!p2@RFX7!0.84!11.48!RFX7;;chr19:21265028..21265052,+!p2@ZNF714!0.84!11.04!ZNF714;;chr6:21597370..21597408,+!p5@SOX4!0.84!9.71!SOX4;;chr1:935496..935509,-!p3@HES4!0.84!9.27!HES4;;chr6:15246261..15246312,+!p1@JARID2!0.83!148.77!JARID2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.83!34.43!ZNF10;;chr12:66218183..66218209,+!p4@HMGA2!0.83!11.48!HMGA2;;chr20:52226313..52226350,-!p3@ZNF217!0.83!5.74!ZNF217;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!0.83!5.74!POU3F3;;chr17:38020557..38020572,-!p4@IKZF3!0.83!5.74!IKZF3;;chr9:77112225..77112238,+!p2@RORB!0.83!5.74!RORB;;chr14:55493763..55493824,-!p1@WDHD1!0.82!45.47!WDHD1;;chr19:1592714..1592762,-!p1@MBD3!0.82!45.47!MBD3;;chr13:41635029..41635044,-!p4@ELF1!0.82!12.36!ELF1;;chr21:34144157..34144175,-!p3@GCFC1!0.82!9.27!GCFC1;;chr15:57211634..57211657,+!p5@TCF12!0.82!8.83!TCF12;;chr16:30596963..30596999,-!p3@ZNF785!0.81!11.48!ZNF785;;chr6:21597514..21597578,+!p4@SOX4!0.81!9.71!SOX4;;chr6:91006575..91006602,-!p2@BACH2!0.81!8.39!BACH2;;chr19:12551824..12551846,-!p2@ZNF443!0.81!7.50!ZNF443;;chr1:149858461..149858479,+!p1@BOLA1!0.80!2258.53!BOLA1;;chr7:64363638..64363667,+!p1@ZNF273!0.80!28.70!ZNF273;;chr19:11959532..11959593,+!p1@ZNF439!0.80!21.63!ZNF439;;chr19:19976634..19976677,+!p2@ZNF253!0.80!20.31!ZNF253;;chr17:37934365..37934387,-!p2@IKZF3!0.80!5.30!IKZF3;;chr13:79177674..79177701,-!p1@POU4F1!0.80!5.30!POU4F1;;chr2:102091144..102091183,-!p2@RFX8!0.80!5.30!RFX8;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.80!5.30!POU3F3;;chr2:60780580..60780590,-!p9@BCL11A!0.80!5.30!BCL11A;;chr3:44596664..44596672,+!p2@ZNF167!0.80!5.30!ZNF167;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.71!JARID2;;chr14:75988771..75988826,+!p1@BATF!0.79!7.06!BATF;;chr15:76629097..76629120,+!p2@ISL2!0.78!5.74!ISL2;;chr1:117602932..117602973,+!p1@TTF2!0.77!19.87!TTF2;;chr19:12203100..12203132,+!p1@ZNF788!0.77!10.60!ZNF788;;chrX:84499081..84499115,+!p2@ZNF711!0.77!7.50!ZNF711;;chr8:81398682..81398697,+!p6@ZBTB10!0.77!6.62!ZBTB10;;chr7:50343800..50343811,+!p8@IKZF1!0.77!4.86!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!0.77!4.86!EOMES;;chr4:109086281..109086319,-!p9@LEF1!0.77!4.86!LEF1;;chr4:109088940..109089037,-!p4@LEF1!0.77!4.86!LEF1;;chr12:104531854..104531893,-!p2@NFYB!0.76!18.98!NFYB;;chr9:3525867..3525902,-!p3@RFX3!0.76!17.66!RFX3;;chr19:49140572..49140594,-!p2@DBP!0.76!7.95!DBP;;chr19:9879350..9879419,-!p2@ZNF846!0.75!10.60!ZNF846;;chr1:25256756..25256774,-!p1@RUNX3!0.75!9.27!RUNX3;;chr7:64254834..64254854,+!p2@ZNF138!0.75!8.83!ZNF138;;chr3:44596679..44596726,+!p1@ZNF167!0.74!21.63!ZNF167;;chr19:23869970..23869991,-!p1@ZNF675!0.74!18.98!ZNF675;;chr18:47814010..47814021,-!p3@CXXC1!0.74!7.95!CXXC1;;chr6:21597600..21597664,+!p3@SOX4!0.74!7.95!SOX4;;chr19:10305581..10305646,-!p1@DNMT1!0.73!169.52!DNMT1;;chr19:22018966..22019001,-!p1@ZNF43!0.73!28.25!ZNF43;;chr19:22235279..22235301,+!p1@ZNF257!0.73!8.83!ZNF257;;chr19:37407172..37407217,-!p2@ZNF829!0.73!8.39!ZNF829;;chrX:131623982..131624011,-!p6@MBNL3!0.73!6.62!MBNL3;;chr5:133477868..133477885,+!p13@TCF7!0.73!4.41!TCF7;;chr6:992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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=FF:0100104
 |fonse_cell_line_closure=FF:0100104
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10435-106E3
 |is_a=EFO:0002091;;FF:0000210;;FF:0104973
 |is_obsolete=
+|library_id=CNhs11715
+|library_id_phase_based=2:CNhs11715
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10435
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10435
 |name=Hodgkin's lymphoma cell line:HD-Mar2
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11715,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 55: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=106E3
+|rna_tube_id=1.06E+05
 |rna_weight_ug=5.585
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB1981
 |sample_cell_line=HD-Mar2
@@ Line 79: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10435-106E3;search_select_hide=table117:FF:10435-106E3
 }}

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FF:10435-106E3: Difference between revisions

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Latest revision as of 14:01, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0