FF:10463-106H4: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	squamous cell carcinoma cell line:EC-GI-10
Species:	Human (Homo sapiens)
Library ID:	CNhs11252
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	esophagus
dev stage	NA
sex	male
age	65
cell type	unclassifiable
cell line	EC-GI-10
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005462

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11252		CAGE		DRX008014		DRR008886

Accession ID Hg19

Library id		BAM		CTSS
CNhs11252		DRZ000311		DRZ001696

Accession ID Hg38

Library id		BAM		CTSS
CNhs11252		DRZ011661		DRZ013046

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0539
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0382
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0432
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.133
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.186
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.708
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0713
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.29
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0713
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-2.427999e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0105
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.11
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0713
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11252

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0021
MA0003.1	MA0003.1	0.308
MA0004.1	MA0004.1	0.764
MA0006.1	MA0006.1	0.216
MA0007.1	MA0007.1	0.85
MA0009.1	MA0009.1	0.139
MA0014.1	MA0014.1	0.0283
MA0017.1	MA0017.1	0.704
MA0018.2	MA0018.2	0.904
MA0019.1	MA0019.1	0.547
MA0024.1	MA0024.1	0.154
MA0025.1	MA0025.1	0.334
MA0027.1	MA0027.1	0.717
MA0028.1	MA0028.1	0.00199
MA0029.1	MA0029.1	0.884
MA0030.1	MA0030.1	0.00271
MA0031.1	MA0031.1	0.0759
MA0035.2	MA0035.2	0.157
MA0038.1	MA0038.1	0.265
MA0039.2	MA0039.2	3.64803e-4
MA0040.1	MA0040.1	0.429
MA0041.1	MA0041.1	0.639
MA0042.1	MA0042.1	0.58
MA0043.1	MA0043.1	0.384
MA0046.1	MA0046.1	0.9
MA0047.2	MA0047.2	0.00834
MA0048.1	MA0048.1	0.309
MA0050.1	MA0050.1	0.0155
MA0051.1	MA0051.1	0.00656
MA0052.1	MA0052.1	0.034
MA0055.1	MA0055.1	4.13523e-4
MA0057.1	MA0057.1	0.791
MA0058.1	MA0058.1	0.655
MA0059.1	MA0059.1	0.791
MA0060.1	MA0060.1	0.0628
MA0061.1	MA0061.1	0.732
MA0062.2	MA0062.2	0.0153
MA0065.2	MA0065.2	0.629
MA0066.1	MA0066.1	0.413
MA0067.1	MA0067.1	0.945
MA0068.1	MA0068.1	0.00819
MA0069.1	MA0069.1	0.337
MA0070.1	MA0070.1	0.91
MA0071.1	MA0071.1	0.213
MA0072.1	MA0072.1	0.596
MA0073.1	MA0073.1	0.807
MA0074.1	MA0074.1	0.785
MA0076.1	MA0076.1	0.00668
MA0077.1	MA0077.1	0.269
MA0078.1	MA0078.1	0.73
MA0079.2	MA0079.2	0.945
MA0080.2	MA0080.2	2.88567e-5
MA0081.1	MA0081.1	0.00327
MA0083.1	MA0083.1	0.055
MA0084.1	MA0084.1	0.482
MA0087.1	MA0087.1	0.715
MA0088.1	MA0088.1	0.148
MA0090.1	MA0090.1	0.561
MA0091.1	MA0091.1	0.00511
MA0092.1	MA0092.1	0.235
MA0093.1	MA0093.1	0.825
MA0099.2	MA0099.2	0.0381
MA0100.1	MA0100.1	0.556
MA0101.1	MA0101.1	0.371
MA0102.2	MA0102.2	0.294
MA0103.1	MA0103.1	9.82341e-10
MA0104.2	MA0104.2	0.885
MA0105.1	MA0105.1	0.0057
MA0106.1	MA0106.1	0.00258
MA0107.1	MA0107.1	0.521
MA0108.2	MA0108.2	0.949
MA0111.1	MA0111.1	0.597
MA0112.2	MA0112.2	0.956
MA0113.1	MA0113.1	0.0638
MA0114.1	MA0114.1	0.459
MA0115.1	MA0115.1	1
MA0116.1	MA0116.1	0.138
MA0117.1	MA0117.1	0.454
MA0119.1	MA0119.1	0.205
MA0122.1	MA0122.1	0.731
MA0124.1	MA0124.1	0.352
MA0125.1	MA0125.1	0.138
MA0131.1	MA0131.1	0.683
MA0135.1	MA0135.1	0.111
MA0136.1	MA0136.1	0.00184
MA0137.2	MA0137.2	0.349
MA0138.2	MA0138.2	0.201
MA0139.1	MA0139.1	0.289
MA0140.1	MA0140.1	0.322
MA0141.1	MA0141.1	0.653
MA0142.1	MA0142.1	0.0907
MA0143.1	MA0143.1	0.925
MA0144.1	MA0144.1	0.337
MA0145.1	MA0145.1	0.548
MA0146.1	MA0146.1	0.485
MA0147.1	MA0147.1	0.659
MA0148.1	MA0148.1	1.86389e-4
MA0149.1	MA0149.1	0.0329
MA0150.1	MA0150.1	0.162
MA0152.1	MA0152.1	0.539
MA0153.1	MA0153.1	0.929
MA0154.1	MA0154.1	0.0383
MA0155.1	MA0155.1	0.139
MA0156.1	MA0156.1	0.349
MA0157.1	MA0157.1	0.324
MA0159.1	MA0159.1	0.0133
MA0160.1	MA0160.1	0.762
MA0162.1	MA0162.1	0.885
MA0163.1	MA0163.1	0.0908
MA0164.1	MA0164.1	0.749
MA0258.1	MA0258.1	0.612
MA0259.1	MA0259.1	0.85

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11252

Novel motif	Logo	P-value
1	1	0.706
10	10	0.73
100	100	0.235
101	101	0.425
102	102	0.53
103	103	0.879
104	104	0.446
105	105	0.214
106	106	0.874
107	107	0.3
108	108	0.479
109	109	0.0529
11	11	0.638
110	110	0.896
111	111	0.922
112	112	0.826
113	113	0.444
114	114	0.324
115	115	0.638
116	116	0.313
117	117	0.133
118	118	0.954
119	119	0.321
12	12	0.101
120	120	0.933
121	121	0.695
122	122	0.46
123	123	0.527
124	124	0.15
125	125	0.723
126	126	0.331
127	127	0.687
128	128	0.416
129	129	0.539
13	13	0.00287
130	130	0.639
131	131	0.177
132	132	0.809
133	133	0.0111
134	134	0.0558
135	135	0.075
136	136	0.0552
137	137	0.0186
138	138	0.698
139	139	0.2
14	14	0.748
140	140	0.732
141	141	0.606
142	142	0.769
143	143	0.0375
144	144	0.235
145	145	0.905
146	146	0.849
147	147	0.183
148	148	0.601
149	149	0.0976
15	15	0.946
150	150	0.234
151	151	0.801
152	152	0.185
153	153	0.716
154	154	0.188
155	155	0.226
156	156	0.97
157	157	0.86
158	158	0.262
159	159	0.44
16	16	0.933
160	160	0.166
161	161	0.501
162	162	0.781
163	163	0.46
164	164	0.464
165	165	0.739
166	166	0.904
167	167	0.514
168	168	0.965
169	169	0.523
17	17	0.317
18	18	0.544
19	19	0.111
2	2	0.644
20	20	0.0627
21	21	0.235
22	22	0.341
23	23	0.68
24	24	0.356
25	25	0.645
26	26	0.727
27	27	0.333
28	28	0.263
29	29	0.159
3	3	0.76
30	30	0.715
31	31	0.232
32	32	0.00299
33	33	0.371
34	34	0.309
35	35	0.126
36	36	0.383
37	37	0.907
38	38	0.957
39	39	0.304
4	4	0.718
40	40	0.116
41	41	0.00538
42	42	0.272
43	43	0.434
44	44	0.887
45	45	0.865
46	46	0.585
47	47	0.826
48	48	0.517
49	49	0.129
5	5	0.754
50	50	0.338
51	51	0.941
52	52	0.802
53	53	0.845
54	54	0.882
55	55	0.919
56	56	0.781
57	57	0.23
58	58	0.833
59	59	0.147
6	6	0.544
60	60	0.739
61	61	0.183
62	62	0.541
63	63	0.471
64	64	0.689
65	65	0.452
66	66	0.0247
67	67	0.629
68	68	0.0576
69	69	0.488
7	7	0.791
70	70	0.0351
71	71	0.777
72	72	0.565
73	73	0.403
74	74	0.0637
75	75	0.32
76	76	0.4
77	77	0.733
78	78	0.201
79	79	0.109
8	8	0.55
80	80	0.0385
81	81	0.233
82	82	0.0559
83	83	0.945
84	84	0.717
85	85	0.4
86	86	0.505
87	87	0.0458
88	88	0.483
89	89	0.537
9	9	0.144
90	90	0.79
91	91	0.11
92	92	0.155
93	93	0.493
94	94	0.245
95	95	0.326
96	96	0.371
97	97	0.984
98	98	0.0787
99	99	0.692

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11252

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007907
+|DRA_sample_Accession=CAGE@SAMD00005462
-|accession_numbers=CAGE;DRX008014;DRR008886;DRZ000311;DRZ001696
+|accession_numbers=CAGE;DRX008014;DRR008886;DRZ000311;DRZ001696;DRZ011661;DRZ013046
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.57!369.43!EHF;;chr3:189507432..189507459,+!p1@TP63!2.22!165.16!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.22!163.20!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.02!102.67!ELF3;;chr17:7493405..7493419,-!p1@SOX15!1.95!89.10!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.94!97.13!IRF6;;chr8:10588010..10588030,-!p1@SOX7!1.79!61.24!SOX7;;chr17:80797886..80797906,-!p1@ZNF750!1.79!59.99!ZNF750;;chr2:176969228..176969260,+!p1@HOXD11!1.77!58.03!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.63!41.78!GRHL2;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.57!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.58!37.14!FOXA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.54!54.46!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.54!42.32!NCOA7;;chr1:6479968..6479986,-!p1@HES2!1.54!33.75!HES2;;chr11:34642656..34642667,+!p2@EHF!1.54!33.39!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.53!334.07!KLF5;;chr6:126240380..126240430,+!p2@NCOA7!1.53!82.85!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.82!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!26.96!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.21!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.31!19.46!IRF6;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.25!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.64!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.71!TFAP2C;;chr17:46687959..46688007,-!p2@HOXB7!1.23!21.96!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.46!PITX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.18!714.75!NFE2L1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.39!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.11!DLX5;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.18!BNC1;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.61!SOX2;;chr19:2867325..2867348,+!p1@ZNF556!1.09!11.43!ZNF556;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.07!TFAP2A;;chr6:126240463..126240489,+!p6@NCOA7!1.07!12.14!NCOA7;;chr2:46524897..46524911,+!p2@EPAS1!1.05!28.57!EPAS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.04!12.14!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.03!26.60!ARNTL2;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.64!HOXA9;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.46!BHLHA15;;chr6:126102292..126102329,+!p3@NCOA7!1.00!30.00!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.93!HOXA9;;chr2:70142232..70142251,+!p1@MXD1!0.99!50.35!MXD1;;chr14:35872962..35873025,-!p3@NFKBIA!0.99!22.50!NFKBIA;;chr17:46688334..46688385,-!p1@HOXB7!0.98!12.50!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.97!10.18!HOXC4;;chr5:137804405..137804444,+!p3@EGR1!0.97!10.00!EGR1;;chr22:24093154..24093183,-!p2@ZNF70!0.97!8.39!ZNF70;;chr20:30193083..30193098,+!p1@ID1!0.96!677.08!ID1;;chr1:158979792..158979814,+!p2@IFI16!0.96!79.64!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.95!10.18!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!0.95!9.82!NCOA7;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.86!ZIC1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.94!71.24!PPP1R13L;;chr2:178128149..178128198,-!p2@NFE2L2!0.94!43.03!NFE2L2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!39.28!BCL11A;;chr18:19749541..19749557,+!p1@GATA6!0.94!24.82!GATA6;;chr7:27153454..27153469,-!p2@HOXA3!0.94!7.68!HOXA3;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.50!GRHL2;;chr3:189507460..189507471,+!p3@TP63!0.93!7.50!TP63;;chr6:85473156..85473210,-!p2@TBX18!0.92!9.11!TBX18;;chr3:193853927..193853944,+!p1@HES1!0.89!230.87!HES1;;chr17:80797863..80797874,-!p2@ZNF750!0.89!6.79!ZNF750;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.61!LHX6;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.43!HOXC13;;chr14:37132241..37132304,+!p3@PAX9!0.87!6.43!PAX9;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.43!SOX2;;chr1:212782094..212782109,+!p1@ATF3!0.86!181.59!ATF3;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.39!CREB5;;chr1:158979872..158979898,+!p3@IFI16!0.86!20.36!IFI16;;chr6:126102254..126102289,+!p5@NCOA7!0.85!17.68!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.79!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.89!TBX20;;chr8:102504979..102505010,+!p2@GRHL2!0.84!5.89!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!5.89!NKX2-8;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.49!NR4A1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.83!12.86!ZNF395;;chr4:299227..299272,-!p1@ZNF732!0.83!5.71!ZNF732;;chr3:141868357..141868393,-!p3@TFDP2!0.82!39.46!TFDP2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.54!IRX2;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.54!DLX4;;chr20:18038521..18038571,-!p1@OVOL2!0.82!5.54!OVOL2;;chr1:935467..935484,-!p1@HES4!0.81!26.07!HES4;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.36!TFAP2A;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.36!CDX2;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!358.54!NFKBIA;;chr9:14314131..14314147,-!p2@NFIB!0.79!30.89!NFIB;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr14:38064307..38064323,-!p3@FOXA1!0.79!5.18!FOXA1;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.00!HOXD8;;chr17:46703212..46703238,-!p2@HOXB9!0.78!5.00!HOXB9;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.75!SOX13;;chr6:19837592..19837621,+!p1@ID4!0.77!32.50!ID4;;chr1:158979851..158979865,+!p5@IFI16!0.77!11.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.03!ZFP64;;chr15:67418119..67418162,+!p5@SMAD3!0.77!5.54!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.76!4.82!IRF6;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.82!ZIC1;;chr12:11802600..11802685,+!p1@ETV6!0.75!78.39!ETV6;;chr12:80084737..80084763,-!p3@PAWR!0.75!19.11!PAWR;;chr14:24630465..24630531,+!p1@IRF9!0.74!191.59!IRF9;;chr17:47439437..47439533,-!p1@ZNF652!0.74!40.35!ZNF652;;chr12:27485823..27485868,+!p2@ARNTL2!0.74!19.82!ARNTL2;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.75!SIX1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.36!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.74!4.46!HOXD11;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.46!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.74!4.46!HOXB7;;chr17:46703942..46703964,-!p4@HOXB9!0.74!4.46!HOXB9;;chr9:129376201..129376225,+!p1@LMX1B!0.74!4.46!LMX1B;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr19:45252008..45252024,+!p2@BCL3!0.72!15.36!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.72!5.18!EGR1;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.29!ZNF323;;chr3:189507523..189507535,+!p5@TP63!0.72!4.29!TP63;;chr8:72756063..72756125,-!p1@MSC!0.71!9.11!MSC;;chr2:176969124..176969155,+!p5@HOXD11!0.71!4.11!HOXD11;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.11!FOXA1;;chr19:9609272..9609297,-!p1@ZNF560!0.71!4.11!ZNF560;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!56.78!ZC3H12A;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.21!HOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.69!30.89!ARNTL2;;chr2:157189180..157189290,-!p1@NR4A2!0.69!23.21!NR4A2;;chr1:161736038..161736056,+!p4@ATF6!0.69!10.00!ATF6;;chr1:935398..935465,-!p2@HES4!0.69!8.75!HES4;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.36!GRHL1;;chr19:33865009..33865090,+!p3@CEBPG!0.69!5.36!CEBPG;;chr12:54393880..54393962,+!p1@HOXC9!0.69!3.93!HOXC9;;chr2:61108695..61108753,+!p1@REL!0.68!30.00!REL;;chr16:30537839..30537929,-!p1@ZNF768!0.68!27.14!ZNF768;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.28!TOX2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.14!IFI16;;chr1:50889103..50889145,-!p1@DMRTA2!0.68!3.75!DMRTA2;;chr5:170736243..170736279,+!p1@TLX3!0.68!3.75!TLX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.75!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.68!3.75!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.68!3.75!DLX5;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.75!ZNF704;;chr9:110252035..110252057,-!p1@KLF4!0.67!68.03!KLF4;;chr12:53625966..53626012,-!p2@RARG!0.67!10.71!RARG;;chr19:50432453..50432468,+!p1@ATF5!0.66!232.83!ATF5;;chr8:49833948..49833973,-!p2@SNAI2!0.66!25.89!SNAI2;;chr19:33864571..33864596,+!p2@CEBPG!0.66!9.82!CEBPG;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.36!ZNF860;;chr14:24630902..24630948,+!p2@IRF9!0.66!4.46!IRF9;;chr10:8095593..8095625,+!p3@GATA3!0.66!4.29!GATA3;;chr17:46703687..46703740,-!p1@HOXB9!0.66!3.57!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.57!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.57!HOXB13;;chr1:50889155..50889173,-!p2@DMRTA2!0.66!3.57!DMRTA2;;chr4:38665810..38665827,+!p1@KLF3!0.65!59.28!KLF3;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.21!NFIB;;chr12:19592405..19592492,+!p2@AEBP2!0.65!35.00!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.53!FOSL1;;chr14:23755297..23755350,-!p1@HOMEZ!0.64!47.14!HOMEZ;;chr7:17338266..17338282,+!p1@AHR!0.64!42.50!AHR;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.53!EGR1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.64!6.07!MEIS3P1;;chr15:67458861..67458879,+!p17@SMAD3!0.64!3.39!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.64!3.39!BARX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.64!3.39!MLXIPL;;chr9:100616439..100616476,+!p3@FOXE1!0.64!3.39!FOXE1;;chr17:46125707..46125746,+!p2@NFE2L1!0.63!204.98!NFE2L1;;chr6:21597600..21597664,+!p3@SOX4!0.62!5.71!SOX4;;chr5:170736216..170736238,+!p2@TLX3!0.62!3.21!TLX3;;chr3:69915385..69915438,+!p3@MITF!0.62!3.21!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.62!3.21!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.04!DMRTA1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.82!SMARCA2;;chr1:164528297..164528309,+!p9@PBX1!0.60!4.11!PBX1;;chr2:178129414..178129517,-!p1@NFE2L2!0.59!140.52!NFE2L2;;chr9:3525968..3526016,-!p1@RFX3!0.59!20.18!RFX3;;chr17:47439568..47439641,-!p2@ZNF652!0.59!19.64!ZNF652;;chr8:123793860..123793921,+!p2@ZHX2!0.59!9.28!ZHX2;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.93!DLX2;;chr10:97889464..97889494,+!p3@ZNF518A!0.59!6.07!ZNF518A;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.18!MECOM;;chr20:48809000..48809053,+!p12@CEBPB!0.59!4.11!CEBPB;;chr17:46675420..46675465,-!p3@HOXB6!0.59!3.39!HOXB6;;chr6:126240490..126240501,+!p11@NCOA7!0.59!2.86!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.59!2.86!HOXA6;;chr9:124976154..124976177,-!p5@LHX6!0.59!2.86!LHX6;;chr2:113012592..11301267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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10463-106H4
 |is_a=EFO:0002091;;FF:0000210;;FF:0102024
 |is_obsolete=
 |library_id=CNhs11252
-|library_id_phase_based=1:CNhs11252
+|library_id_phase_based=2:CNhs11252
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10463
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10463
 |name=squamous cell carcinoma cell line:EC-GI-10
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11252,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10463-106H4;search_select_hide=table117:FF:10463-106H4
 }}

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FF:10463-106H4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0