FF:10476-106I8: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	Burkitt's lymphoma cell line:RAJI
Species:	Human (Homo sapiens)
Library ID:	CNhs11268
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	11
cell type	b cell
cell line	RAJI
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005827

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11268		CAGE		DRX007780		DRR008652

Accession ID Hg19

Library id		BAM		CTSS
CNhs11268		DRZ000077		DRZ001462

Accession ID Hg38

Library id		BAM		CTSS
CNhs11268		DRZ011427		DRZ012812

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.254
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.606
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0664
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0283
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0.0577
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.109
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0109
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0688
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0577
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.233
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.196
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.183
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0.909
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.221
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0577
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.524
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0606
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.066
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.109
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0577
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0208
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.521
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.154
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.233
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0.109
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11268

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.309
MA0003.1	MA0003.1	0.384
MA0004.1	MA0004.1	0.0879
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.457
MA0009.1	MA0009.1	0.854
MA0014.1	MA0014.1	0.959
MA0017.1	MA0017.1	0.323
MA0018.2	MA0018.2	0.941
MA0019.1	MA0019.1	0.0168
MA0024.1	MA0024.1	9.04595e-6
MA0025.1	MA0025.1	0.0781
MA0027.1	MA0027.1	0.655
MA0028.1	MA0028.1	0.00114
MA0029.1	MA0029.1	0.405
MA0030.1	MA0030.1	0.229
MA0031.1	MA0031.1	0.951
MA0035.2	MA0035.2	0.896
MA0038.1	MA0038.1	0.492
MA0039.2	MA0039.2	0.558
MA0040.1	MA0040.1	0.192
MA0041.1	MA0041.1	0.217
MA0042.1	MA0042.1	0.477
MA0043.1	MA0043.1	0.789
MA0046.1	MA0046.1	0.206
MA0047.2	MA0047.2	0.69
MA0048.1	MA0048.1	0.446
MA0050.1	MA0050.1	0.575
MA0051.1	MA0051.1	0.891
MA0052.1	MA0052.1	0.0501
MA0055.1	MA0055.1	0.0821
MA0057.1	MA0057.1	0.705
MA0058.1	MA0058.1	0.0667
MA0059.1	MA0059.1	0.00751
MA0060.1	MA0060.1	9.3843e-5
MA0061.1	MA0061.1	0.0213
MA0062.2	MA0062.2	5.67889e-5
MA0065.2	MA0065.2	0.0821
MA0066.1	MA0066.1	0.721
MA0067.1	MA0067.1	0.76
MA0068.1	MA0068.1	0.114
MA0069.1	MA0069.1	0.41
MA0070.1	MA0070.1	0.904
MA0071.1	MA0071.1	0.363
MA0072.1	MA0072.1	0.515
MA0073.1	MA0073.1	0.968
MA0074.1	MA0074.1	0.437
MA0076.1	MA0076.1	2.89382e-4
MA0077.1	MA0077.1	0.255
MA0078.1	MA0078.1	0.185
MA0079.2	MA0079.2	0.216
MA0080.2	MA0080.2	0.128
MA0081.1	MA0081.1	0.0626
MA0083.1	MA0083.1	1.81935e-4
MA0084.1	MA0084.1	0.196
MA0087.1	MA0087.1	0.177
MA0088.1	MA0088.1	0.00381
MA0090.1	MA0090.1	8.27396e-4
MA0091.1	MA0091.1	0.884
MA0092.1	MA0092.1	0.896
MA0093.1	MA0093.1	0.0987
MA0099.2	MA0099.2	4.30573e-5
MA0100.1	MA0100.1	0.0339
MA0101.1	MA0101.1	0.0914
MA0102.2	MA0102.2	0.16
MA0103.1	MA0103.1	0.0362
MA0104.2	MA0104.2	3.09706e-4
MA0105.1	MA0105.1	4.1117e-4
MA0106.1	MA0106.1	0.214
MA0107.1	MA0107.1	0.203
MA0108.2	MA0108.2	1.03402e-13
MA0111.1	MA0111.1	0.156
MA0112.2	MA0112.2	0.407
MA0113.1	MA0113.1	0.205
MA0114.1	MA0114.1	0.0974
MA0115.1	MA0115.1	0.0275
MA0116.1	MA0116.1	3.17348e-4
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.745
MA0122.1	MA0122.1	0.424
MA0124.1	MA0124.1	0.6
MA0125.1	MA0125.1	0.631
MA0131.1	MA0131.1	0.103
MA0135.1	MA0135.1	0.0359
MA0136.1	MA0136.1	0.0109
MA0137.2	MA0137.2	0.00167
MA0138.2	MA0138.2	0.58
MA0139.1	MA0139.1	0.363
MA0140.1	MA0140.1	0.129
MA0141.1	MA0141.1	0.155
MA0142.1	MA0142.1	0.0567
MA0143.1	MA0143.1	0.797
MA0144.1	MA0144.1	0.00746
MA0145.1	MA0145.1	0.106
MA0146.1	MA0146.1	0.606
MA0147.1	MA0147.1	7.5519e-5
MA0148.1	MA0148.1	0.873
MA0149.1	MA0149.1	0.0586
MA0150.1	MA0150.1	0.506
MA0152.1	MA0152.1	0.599
MA0153.1	MA0153.1	0.00968
MA0154.1	MA0154.1	0.0754
MA0155.1	MA0155.1	0.391
MA0156.1	MA0156.1	0.0672
MA0157.1	MA0157.1	0.507
MA0159.1	MA0159.1	0.279
MA0160.1	MA0160.1	0.266
MA0162.1	MA0162.1	0.801
MA0163.1	MA0163.1	1.50872e-7
MA0164.1	MA0164.1	0.555
MA0258.1	MA0258.1	0.173
MA0259.1	MA0259.1	0.0406

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11268

Novel motif	Logo	P-value
1	1	0.0119
10	10	0.013
100	100	0.123
101	101	0.0699
102	102	0.434
103	103	0.515
104	104	0.81
105	105	0.876
106	106	0.427
107	107	0.351
108	108	0.984
109	109	0.244
11	11	0.0847
110	110	0.179
111	111	0.02
112	112	0.512
113	113	0.715
114	114	0.383
115	115	0.857
116	116	0.786
117	117	0.0117
118	118	0.216
119	119	0.101
12	12	0.957
120	120	0.691
121	121	0.683
122	122	0.817
123	123	1.0331e-4
124	124	0.189
125	125	0.032
126	126	0.339
127	127	0.765
128	128	0.201
129	129	0.901
13	13	0.0917
130	130	0.774
131	131	0.159
132	132	0.41
133	133	0.524
134	134	0.708
135	135	0.966
136	136	0.493
137	137	0.345
138	138	0.744
139	139	0.342
14	14	0.7
140	140	0.402
141	141	0.301
142	142	0.171
143	143	0.411
144	144	0.729
145	145	0.116
146	146	0.961
147	147	0.499
148	148	0.38
149	149	0.36
15	15	0.239
150	150	0.844
151	151	0.78
152	152	0.0148
153	153	0.713
154	154	0.703
155	155	0.0245
156	156	0.735
157	157	0.155
158	158	0.3
159	159	0.676
16	16	0.904
160	160	0.483
161	161	0.0588
162	162	0.798
163	163	0.499
164	164	0.226
165	165	0.755
166	166	0.583
167	167	0.0458
168	168	0.461
169	169	0.786
17	17	0.718
18	18	0.572
19	19	0.819
2	2	0.38
20	20	0.295
21	21	0.137
22	22	0.594
23	23	0.158
24	24	0.815
25	25	0.158
26	26	0.0405
27	27	0.983
28	28	0.443
29	29	0.0202
3	3	0.148
30	30	0.0625
31	31	0.874
32	32	0.57
33	33	0.987
34	34	0.39
35	35	0.174
36	36	0.048
37	37	0.554
38	38	0.729
39	39	0.52
4	4	0.426
40	40	0.284
41	41	0.743
42	42	0.146
43	43	0.456
44	44	0.473
45	45	0.236
46	46	0.126
47	47	0.0733
48	48	0.16
49	49	0.0579
5	5	0.999
50	50	0.962
51	51	0.837
52	52	0.219
53	53	0.357
54	54	0.705
55	55	0.812
56	56	0.991
57	57	0.0487
58	58	0.285
59	59	0.74
6	6	0.575
60	60	0.699
61	61	0.137
62	62	0.277
63	63	0.56
64	64	0.286
65	65	0.573
66	66	0.0852
67	67	0.835
68	68	0.18
69	69	0.943
7	7	0.18
70	70	0.911
71	71	0.0118
72	72	0.879
73	73	0.449
74	74	0.328
75	75	0.00865
76	76	0.103
77	77	0.503
78	78	0.408
79	79	0.396
8	8	0.225
80	80	0.932
81	81	0.0481
82	82	0.725
83	83	0.774
84	84	0.446
85	85	0.453
86	86	0.518
87	87	0.521
88	88	0.923
89	89	0.29
9	9	0.409
90	90	0.00191
91	91	0.725
92	92	0.902
93	93	0.877
94	94	0.235
95	95	0.259
96	96	0.624
97	97	0.069
98	98	0.516
99	99	0.318

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11268

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101154 RAJI cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0100889 (Burkitt lymphoma cell line sample)
0101154 (RAJI cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005827
+|accession_numbers=CAGE;DRX007780;DRR008652;DRZ000077;DRZ001462;DRZ011427;DRZ012812
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.58!383.15!POU2AF1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!2.27!187.09!MEF2B;;chr19:50922187..50922204,+!p1@SPIB!2.17!146.72!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.16!142.45!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.11!127.67!IRF8;;chr3:189349162..189349207,+!p2@TP63!1.99!96.53!TP63;;chr7:50348268..50348366,+!p4@IKZF1!1.83!66.96!IKZF1;;chr17:38020392..38020477,-!p1@IKZF3!1.73!52.74!IKZF3;;chr6:91006575..91006602,-!p2@BACH2!1.72!75.78!BACH2;;chr2:100759037..100759058,-!p2@AFF3!1.72!50.90!AFF3;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.62!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.68!46.35!PLEK;;chr6:91006518..91006570,-!p1@BACH2!1.66!100.66!BACH2;;chr2:100759010..100759035,-!p1@AFF3!1.62!40.52!AFF3;;chr2:185463247..185463263,+!p1@ZNF804A!1.58!64.12!ZNF804A;;chr1:25256756..25256774,-!p1@RUNX3!1.51!58.43!RUNX3;;chr8:86099884..86099918,+!p4@E2F5!1.48!29.29!E2F5;;chr7:28610099..28610113,+!p5@CREB5!1.47!28.29!CREB5;;chr3:101546827..101546847,+!p2@NFKBIZ!1.42!35.40!NFKBIZ;;chr17:37934204..37934241,-!p3@IKZF3!1.41!24.74!IKZF3;;chr19:36204309..36204335,+!p1@ZBTB32!1.39!23.60!ZBTB32;;chr9:37034469..37034474,-!p1@PAX5!1.38!22.75!PAX5;;chr1:23857698..23857733,-!p1@E2F2!1.34!37.67!E2F2;;chr17:42295777..42295816,-!p7@UBTF!1.33!24.31!UBTF;;chr19:42636586..42636607,-!p1@POU2F2!1.31!52.32!POU2F2;;chr2:60780607..60780624,-!p2@BCL11A!1.25!50.47!BCL11A;;chr13:41593425..41593480,-!p1@ELF1!1.22!98.52!ELF1;;chr2:231090433..231090469,+!p1@SP140!1.22!15.64!SP140;;chr6:391743..391759,+!p1@IRF4!1.22!15.50!IRF4;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.35!KDM5D;;chr17:37934188..37934202,-!p8@IKZF3!1.17!13.93!IKZF3;;chr7:28610060..28610073,+!p9@CREB5!1.14!12.65!CREB5;;chr13:41593493..41593506,-!p8@ELF1!1.14!12.65!ELF1;;chr5:88178983..88179012,-!p1@MEF2C!1.12!93.83!MEF2C;;chr18:52989031..52989079,-!p2@TCF4!1.12!28.43!TCF4;;chr8:60031619..60031676,-!p1@TOX!1.12!26.30!TOX;;chr2:60778035..60778060,-!p4@BCL11A!1.12!14.64!BCL11A;;chr2:231090471..231090504,+!p2@SP140!1.11!11.94!SP140;;chr21:43256981..43257008,-!p2@PRDM15!1.11!11.80!PRDM15;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.09!MYBL2;;chr1:14057463..14057496,+!p4@PRDM2!1.09!11.37!PRDM2;;chr5:158526756..158526797,-!p3@EBF1!1.09!11.37!EBF1;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.43!MYBL2;;chr8:93029879..93029904,-!p30@RUNX1T1!1.04!9.95!RUNX1T1;;chr2:100758991..100759009,-!p3@AFF3!1.04!9.95!AFF3;;chr8:67525443..67525459,-!p2@MYBL1!1.03!14.64!MYBL1;;chr8:128748308..128748324,+!p2@MYC!1.01!263.16!MYC;;chr20:50159198..50159299,-!p1@NFATC2!1.01!13.51!NFATC2;;chr17:38020557..38020572,-!p4@IKZF3!1.01!9.24!IKZF3;;chr5:88120151..88120177,-!p6@MEF2C!0.99!8.81!MEF2C;;chr3:141747950..141748004,-!p7@TFDP2!0.99!8.81!TFDP2;;chr15:42749722..42749739,-!p2@ZFP106!0.97!15.21!ZFP106;;chr11:47236584..47236679,+!p1@DDB2!0.95!90.28!DDB2;;chr8:67525473..67525518,-!p1@MYBL1!0.95!18.48!MYBL1;;chr12:24715376..24715432,-!p1@SOX5!0.95!10.24!SOX5;;chr6:135502501..135502546,+!p1@MYB!0.95!9.53!MYB;;chr3:141747459..141747475,-!p1@TFDP2!0.94!66.68!TFDP2;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.54!ZNF296;;chr2:100759060..100759073,-!p8@AFF3!0.94!7.68!AFF3;;chr3:32023232..32023273,+!p1@ZNF860!0.93!10.80!ZNF860;;chr5:138609782..138609826,+!p5@MATR3!0.90!47.20!MATR3;;chr7:64838786..64838809,+!p2@ZNF92!0.90!41.09!ZNF92;;chr3:71631151..71631194,-!p15@FOXP1!0.90!7.82!FOXP1;;chr2:100759076..100759088,-!p10@AFF3!0.89!6.82!AFF3;;chr5:158526917..158526932,-!p1@EBF1!0.88!17.06!EBF1;;chr14:75988771..75988826,+!p1@BATF!0.88!8.96!BATF;;chr2:231090344..231090361,-!p3@SP110!0.88!6.54!SP110;;chr2:60780753..60780800,-!p1@BCL11A!0.85!31.85!BCL11A;;chr1:117602932..117602973,+!p1@TTF2!0.85!24.17!TTF2;;chr17:37934138..37934150,-!p12@IKZF3!0.84!5.97!IKZF3;;chr18:52989001..52989030,-!p10@TCF4!0.83!6.40!TCF4;;chr2:68615031..68615055,+!p3@PLEK!0.83!5.69!PLEK;;chr7:115799942..115799955,-!p5@TFEC!0.83!5.69!TFEC;;chr3:48282587..48282603,+!p1@ZNF589!0.82!26.44!ZNF589;;chr6:135502408..135502459,+!p2@MYB!0.82!6.68!MYB;;chr6:91006503..91006517,-!p3@BACH2!0.82!5.54!BACH2;;chrX:131623026..131623039,-!p5@MBNL3!0.82!5.54!MBNL3;;chr9:37034258..37034270,-!p3@PAX5!0.81!5.40!PAX5;;chr6:91006719..91006730,-!p5@BACH2!0.81!5.40!BACH2;;chr5:88179017..88179046,-!p2@MEF2C!0.80!22.75!MEF2C;;chr8:86089498..86089519,+!p6@E2F5!0.80!5.26!E2F5;;chr8:86089531..86089544,+!p7@E2F5!0.80!5.26!E2F5;;chr16:85936412..85936431,+!p2@IRF8!0.80!5.26!IRF8;;chr9:37034186..37034216,-!p2@PAX5!0.80!5.26!PAX5;;chr7:77428066..77428132,+!p2@PHTF2!0.79!36.54!PHTF2;;chr4:87857491..87857519,+!p10@AFF1!0.79!7.39!AFF1;;chr12:80083807..80083859,-!p11@PAWR!0.79!6.54!PAWR;;chr7:64126503..64126528,+!p1@ZNF107!0.78!38.39!ZNF107;;chr1:27023752..27023799,+!p4@ARID1A!0.78!6.82!ARID1A;;chr1:158978768..158978800,+!p8@IFI16!0.78!4.98!IFI16;;chr21:43283523..43283544,-!p3@PRDM15!0.78!4.98!PRDM15;;chrX:84499081..84499115,+!p2@ZNF711!0.77!7.53!ZNF711;;chr3:114173720..114173794,-!p6@ZBTB20!0.77!4.83!ZBTB20;;chr6: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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10476-106I8
 |is_a=EFO:0002091;;FF:0000210;;FF:0101154
 |is_obsolete=
+|library_id=CNhs11268
+|library_id_phase_based=2:CNhs11268
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10476
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10476
 |name=Burkitt's lymphoma cell line:RAJI
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11268,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=46.92175
 |sample_age=11
+|sample_category=cell lines
 |sample_cell_catalog=RCB1647
 |sample_cell_line=RAJI
@@ Line 84: / Line 100: @@
 |top_motifs=PDX1:2.46618115465;ZBTB16:2.39935586908;PITX1..3:2.38251549641;POU5F1:2.29138366219;FOXA2:2.1426932976;POU1F1:2.02565289504;POU2F1..3:2.00139918827;MYB:1.94372338078;AIRE:1.89590336802;CDX1,2,4:1.8848233308;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.87527777017;YY1:1.8198953726;FOXP1:1.76151220439;NKX6-1,2:1.73712597937;TOPORS:1.67863391725;E2F1..5:1.67853822441;BREu{core}:1.56008914089;FOXP3:1.53188376277;NFY{A,B,C}:1.53045952677;PBX1:1.40031300447;NRF1:1.26580678466;FOX{I1,J2}:1.26176906128;HOXA9_MEIS1:1.21342870758;ZNF143:1.21326944542;VSX1,2:1.20026432152;ELK1,4_GABP{A,B1}:1.07246908021;ELF1,2,4:1.04447050019;PAX6:1.00714123081;NKX2-1,4:1.00669831198;NR5A1,2:0.973314628875;DMAP1_NCOR{1,2}_SMARC:0.791098910492;OCT4_SOX2{dimer}:0.779017077593;PAX3,7:0.759333829052;FOX{F1,F2,J1}:0.744771413137;bHLH_family:0.698625406634;NFKB1_REL_RELA:0.690203745421;RUNX1..3:0.687467013944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.68255360303;FOXQ1:0.674702377343;AHR_ARNT_ARNT2:0.633628605529;TEF:0.626760027502;IKZF2:0.612206478738;POU3F1..4:0.542460759812;ZEB1:0.459658679826;PAX4:0.457581690812;NKX2-2,8:0.452420995792;SPIB:0.451852811478;HIF1A:0.447201760856;TLX2:0.428895995246;CDC5L:0.422426365764;CUX2:0.420352882231;EVI1:0.420325336762;HOX{A6,A7,B6,B7}:0.395676260076;ALX1:0.381381705225;BPTF:0.376335002739;GFI1:0.373224159194;DBP:0.3610029997;GATA6:0.355250472195;HMGA1,2:0.344277838148;SPI1:0.339449395385;ATF4:0.295579093757;IRF1,2:0.28306583555;LMO2:0.281155593777;RFX2..5_RFXANK_RFXAP:0.275802334096;ATF5_CREB3:0.267383335709;SNAI1..3:0.267332083801;NKX3-2:0.255187661787;PPARG:0.242887895332;ZNF384:0.240867975291;TFDP1:0.217023273253;HOX{A4,D4}:0.216888353456;CRX:0.190670632864;NFIX:0.152860766409;RORA:0.106541524664;SOX17:0.097446215247;ARID5B:0.0885566321555;ESRRA:0.0698973694858;CREB1:0.0569137433013;ESR1:0.0521787722649;MYOD1:0.0475957886891;HOX{A5,B5}:0.0457942779039;HAND1,2:0.0247872724362;PRRX1,2:0.016778815517;RBPJ:0.0103678175903;ADNP_IRX_SIX_ZHX:0.00249256562163;TGIF1:-0.00185863996614;ETS1,2:-0.00398173240581;RXRA_VDR{dimer}:-0.00584707143131;T:-0.0205384653418;NKX3-1:-0.0339642074351;FOXO1,3,4:-0.0418252867489;FOXM1:-0.0606400976627;HES1:-0.0705327140253;RFX1:-0.0961509714431;EN1,2:-0.146048127393;IRF7:-0.149547744895;SOX5:-0.173364943878;HNF4A_NR2F1,2:-0.176700678049;HBP1_HMGB_SSRP1_UBTF:-0.188629425844;FOXN1:-0.205041306599;PAX8:-0.210321642047;AR:-0.223153778526;LEF1_TCF7_TCF7L1,2:-0.239870562588;GATA4:-0.244072414914;NANOG:-0.285562825831;SOX{8,9,10}:-0.295881077912;HNF1A:-0.30515005838;TP53:-0.310635362304;CEBPA,B_DDIT3:-0.319104678789;MYBL2:-0.358141338058;PAX2:-0.364294742475;NR1H4:-0.381619338801;NR6A1:-0.391429066712;ZFP161:-0.406081212244;MEF2{A,B,C,D}:-0.428508169053;RXR{A,B,G}:-0.428619392201;STAT5{A,B}:-0.431011943812;ONECUT1,2:-0.445428815844;HSF1,2:-0.45163560167;ALX4:-0.46221049682;FOXD3:-0.473730312674;NFIL3:-0.523722994957;FOSL2:-0.579000473374;NKX2-3_NKX2-5:-0.579180264327;UFEwm:-0.588526740273;NFE2:-0.612632204845;SREBF1,2:-0.613914226939;FOX{D1,D2}:-0.614148305756;MYFfamily:-0.627679574461;POU6F1:-0.63379616411;LHX3,4:-0.674211330101;FOS_FOS{B,L1}_JUN{B,D}:-0.679204856698;BACH2:-0.679990510842;SPZ1:-0.69239898491;SMAD1..7,9:-0.699981994874;KLF4:-0.724287482099;NFATC1..3:-0.739817005445;PRDM1:-0.744057119307;NANOG{mouse}:-0.758294256517;ZNF148:-0.761731416956;GZF1:-0.762033010278;PAX1,9:-0.844109741218;NHLH1,2:-0.853398475758;HLF:-0.900871737622;SOX2:-0.90173917865;JUN:-0.916978036132;TAL1_TCF{3,4,12}:-1.000179307;EBF1:-1.0185209938;IKZF1:-1.02771485768;NFE2L2:-1.02976113439;ATF2:-1.08669862901;RREB1:-1.09956465956;HMX1:-1.10815599615;ZIC1..3:-1.11848704798;GCM1,2:-1.15962036287;STAT2,4,6:-1.17884045425;REST:-1.18716045988;TBX4,5:-1.23431513607;MZF1:-1.28711144286;FOXL1:-1.30372826322;SRF:-1.30480889535;TBP:-1.30918804265;GFI1B:-1.3372115873;NFE2L1:-1.37952147276;HIC1:-1.4069522828;ZBTB6:-1.42145702594;ATF6:-1.42321267646;MED-1{core}:-1.42492315645;GTF2A1,2:-1.4317599986;MAFB:-1.45580315508;STAT1,3:-1.46431135472;EP300:-1.49459700134;ZNF238:-1.50186631656;PAX5:-1.51522619858;XBP1:-1.524312373;NR3C1:-1.58021835687;TEAD1:-1.59641576657;TFAP4:-1.63241825745;PATZ1:-1.65297589944;GTF2I:-1.67132326996;MTF1:-1.69378098304;MAZ:-1.71330416538;SP1:-1.78871164001;MTE{core}:-1.81584481288;ZNF423:-1.82070000212;XCPE1{core}:-1.86411014935;GLI1..3:-1.98624078256;EGR1..3:-1.98728386399;TLX1..3_NFIC{dimer}:-2.02348333702;TFAP2B:-2.05855256751;TFCP2:-2.12923428182;TFAP2{A,C}:-2.19102136801
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10476-106I8;search_select_hide=table117:FF:10476-106I8
 }}

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FF:10476-106I8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0