FF:10483-107A6: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	signet ring carcinoma cell line:NUGC-4
Species:	Human (Homo sapiens)
Library ID:	CNhs11270
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	NUGC-4
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005154

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11270		CAGE		DRX008003		DRR008875

Accession ID Hg19

Library id		BAM		CTSS
CNhs11270		DRZ000300		DRZ001685

Accession ID Hg38

Library id		BAM		CTSS
CNhs11270		DRZ011650		DRZ013035

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.00996
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.439
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0.942
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.173
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0465
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.135
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.05
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.415
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0.05
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00615
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.05
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0475
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.418
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11270

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0892
MA0003.1	MA0003.1	0.554
MA0004.1	MA0004.1	0.38
MA0006.1	MA0006.1	0.245
MA0007.1	MA0007.1	0.11
MA0009.1	MA0009.1	0.0124
MA0014.1	MA0014.1	0.189
MA0017.1	MA0017.1	1.54316e-14
MA0018.2	MA0018.2	0.465
MA0019.1	MA0019.1	0.971
MA0024.1	MA0024.1	0.006
MA0025.1	MA0025.1	0.935
MA0027.1	MA0027.1	0.158
MA0028.1	MA0028.1	8.89294e-4
MA0029.1	MA0029.1	0.25
MA0030.1	MA0030.1	0.0264
MA0031.1	MA0031.1	0.0843
MA0035.2	MA0035.2	7.11828e-4
MA0038.1	MA0038.1	0.181
MA0039.2	MA0039.2	0.00575
MA0040.1	MA0040.1	0.0886
MA0041.1	MA0041.1	0.618
MA0042.1	MA0042.1	0.218
MA0043.1	MA0043.1	0.636
MA0046.1	MA0046.1	3.76191e-65
MA0047.2	MA0047.2	4.24887e-7
MA0048.1	MA0048.1	0.777
MA0050.1	MA0050.1	0.407
MA0051.1	MA0051.1	0.455
MA0052.1	MA0052.1	0.492
MA0055.1	MA0055.1	0.05
MA0057.1	MA0057.1	0.642
MA0058.1	MA0058.1	0.286
MA0059.1	MA0059.1	0.0507
MA0060.1	MA0060.1	0.0232
MA0061.1	MA0061.1	0.268
MA0062.2	MA0062.2	2.70212e-4
MA0065.2	MA0065.2	1.3356e-6
MA0066.1	MA0066.1	0.87
MA0067.1	MA0067.1	0.0665
MA0068.1	MA0068.1	0.0443
MA0069.1	MA0069.1	0.693
MA0070.1	MA0070.1	0.366
MA0071.1	MA0071.1	0.775
MA0072.1	MA0072.1	0.584
MA0073.1	MA0073.1	0.939
MA0074.1	MA0074.1	0.572
MA0076.1	MA0076.1	0.0232
MA0077.1	MA0077.1	0.314
MA0078.1	MA0078.1	0.574
MA0079.2	MA0079.2	0.827
MA0080.2	MA0080.2	0.742
MA0081.1	MA0081.1	0.107
MA0083.1	MA0083.1	0.0703
MA0084.1	MA0084.1	0.485
MA0087.1	MA0087.1	0.132
MA0088.1	MA0088.1	0.742
MA0090.1	MA0090.1	0.607
MA0091.1	MA0091.1	0.213
MA0092.1	MA0092.1	0.774
MA0093.1	MA0093.1	0.29
MA0099.2	MA0099.2	0.00122
MA0100.1	MA0100.1	0.938
MA0101.1	MA0101.1	0.109
MA0102.2	MA0102.2	0.796
MA0103.1	MA0103.1	1.94477e-9
MA0104.2	MA0104.2	0.0703
MA0105.1	MA0105.1	0.32
MA0106.1	MA0106.1	0.163
MA0107.1	MA0107.1	0.11
MA0108.2	MA0108.2	0.61
MA0111.1	MA0111.1	0.836
MA0112.2	MA0112.2	7.32419e-4
MA0113.1	MA0113.1	0.23
MA0114.1	MA0114.1	6.86345e-21
MA0115.1	MA0115.1	4.19343e-6
MA0116.1	MA0116.1	0.472
MA0117.1	MA0117.1	0.375
MA0119.1	MA0119.1	0.109
MA0122.1	MA0122.1	0.776
MA0124.1	MA0124.1	0.236
MA0125.1	MA0125.1	0.0128
MA0131.1	MA0131.1	0.752
MA0135.1	MA0135.1	0.521
MA0136.1	MA0136.1	0.596
MA0137.2	MA0137.2	0.219
MA0138.2	MA0138.2	0.487
MA0139.1	MA0139.1	0.0373
MA0140.1	MA0140.1	0.163
MA0141.1	MA0141.1	1.50743e-4
MA0142.1	MA0142.1	0.803
MA0143.1	MA0143.1	0.833
MA0144.1	MA0144.1	0.311
MA0145.1	MA0145.1	0.00774
MA0146.1	MA0146.1	0.0898
MA0147.1	MA0147.1	0.0397
MA0148.1	MA0148.1	5.54391e-8
MA0149.1	MA0149.1	0.156
MA0150.1	MA0150.1	0.138
MA0152.1	MA0152.1	0.461
MA0153.1	MA0153.1	2.45286e-29
MA0154.1	MA0154.1	0.375
MA0155.1	MA0155.1	0.382
MA0156.1	MA0156.1	0.229
MA0157.1	MA0157.1	0.628
MA0159.1	MA0159.1	0.18
MA0160.1	MA0160.1	0.0053
MA0162.1	MA0162.1	0.691
MA0163.1	MA0163.1	0.835
MA0164.1	MA0164.1	0.0761
MA0258.1	MA0258.1	0.0391
MA0259.1	MA0259.1	0.869

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11270

Novel motif	Logo	P-value
1	1	0.136
10	10	0.269
100	100	0.46
101	101	0.199
102	102	0.591
103	103	0.73
104	104	0.606
105	105	0.251
106	106	0.31
107	107	0.239
108	108	0.652
109	109	0.00899
11	11	0.634
110	110	0.446
111	111	0.915
112	112	0.925
113	113	0.759
114	114	0.823
115	115	0.834
116	116	0.537
117	117	0.0891
118	118	0.294
119	119	0.17
12	12	0.518
120	120	0.0922
121	121	0.404
122	122	0.132
123	123	0.548
124	124	0.398
125	125	0.0899
126	126	0.381
127	127	0.529
128	128	0.51
129	129	0.0435
13	13	0.00618
130	130	0.943
131	131	0.126
132	132	0.519
133	133	0.0139
134	134	0.0392
135	135	0.0137
136	136	0.00241
137	137	0.0797
138	138	0.931
139	139	0.0906
14	14	0.919
140	140	0.907
141	141	0.794
142	142	0.993
143	143	0.0125
144	144	0.315
145	145	0.781
146	146	0.0961
147	147	0.703
148	148	0.157
149	149	0.949
15	15	0.152
150	150	0.636
151	151	0.288
152	152	0.279
153	153	0.323
154	154	0.512
155	155	0.209
156	156	0.335
157	157	0.391
158	158	0.905
159	159	0.943
16	16	0.146
160	160	0.743
161	161	0.357
162	162	0.652
163	163	0.751
164	164	0.361
165	165	0.994
166	166	0.842
167	167	0.397
168	168	0.856
169	169	0.012
17	17	0.372
18	18	0.101
19	19	0.816
2	2	0.732
20	20	0.488
21	21	0.27
22	22	0.596
23	23	0.641
24	24	0.0717
25	25	0.61
26	26	0.00379
27	27	0.695
28	28	0.43
29	29	0.154
3	3	0.78
30	30	0.534
31	31	0.767
32	32	0.524
33	33	0.386
34	34	0.549
35	35	0.691
36	36	0.267
37	37	0.539
38	38	0.299
39	39	0.419
4	4	0.445
40	40	0.0787
41	41	0.151
42	42	0.528
43	43	0.787
44	44	0.473
45	45	0.537
46	46	0.657
47	47	0.279
48	48	0.488
49	49	0.773
5	5	0.636
50	50	0.359
51	51	0.809
52	52	0.532
53	53	0.829
54	54	0.713
55	55	0.825
56	56	0.481
57	57	0.428
58	58	0.523
59	59	0.551
6	6	0.295
60	60	0.362
61	61	0.105
62	62	0.916
63	63	0.131
64	64	0.496
65	65	0.895
66	66	0.138
67	67	0.354
68	68	0.115
69	69	0.116
7	7	0.049
70	70	0.909
71	71	0.293
72	72	0.634
73	73	0.193
74	74	0.945
75	75	0.137
76	76	0.819
77	77	0.0536
78	78	2.92064e-5
79	79	0.4
8	8	0.389
80	80	0.467
81	81	0.127
82	82	0.511
83	83	0.424
84	84	0.486
85	85	0.901
86	86	0.857
87	87	0.0518
88	88	0.843
89	89	0.238
9	9	0.99
90	90	0.885
91	91	0.0101
92	92	0.48
93	93	0.615
94	94	0.079
95	95	0.0847
96	96	0.388
97	97	0.713
98	98	0.488
99	99	0.403

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11270

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3493 (signet ring cell adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007896
+|DRA_sample_Accession=CAGE@SAMD00005154
-|accession_numbers=CAGE;DRX008003;DRR008875;DRZ000300;DRZ001685
+|accession_numbers=CAGE;DRX008003;DRR008875;DRZ000300;DRZ001685;DRZ011650;DRZ013035
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.59!388.06!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.26!182.39!ELF3;;chr17:36105042..36105060,-!p1@HNF1B!2.17!147.03!HNF1B;;chr1:27240455..27240474,-!p1@NR0B2!1.95!87.17!NR0B2;;chr11:129245526..129245553,+!p1@BARX2!1.89!77.17!BARX2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.78!58.64!LHX1;;chr13:73633131..73633149,+!p1@KLF5!1.76!564.60!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.76!56.20!EHF;;chr11:61520075..61520136,+!p1@C11orf9!1.71!102.41!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.66!52.55!MECOM;;chr8:76319876..76319926,+!p1@HNF4G!1.60!39.14!HNF4G;;chr18:19749541..19749557,+!p1@GATA6!1.54!102.29!GATA6;;chr7:73038839..73038862,-!p1@MLXIPL!1.53!32.67!MLXIPL;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.70!ONECUT3;;chr1:201979703..201979721,+!p2@ELF3!1.50!30.60!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.50!FOXQ1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.40!23.90!ZBTB7C;;chr11:34645791..34645836,+!p3@EHF!1.39!23.65!EHF;;chr20:42984330..42984364,+!p2@HNF4A!1.37!22.19!HNF4A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.80!TFCP2L1;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.82!GRHL2;;chr17:70117153..70117174,+!p1@SOX9!1.24!164.59!SOX9;;chr11:129245736..129245758,+!p2@BARX2!1.24!16.22!BARX2;;chr2:171572786..171572840,+!p2@SP5!1.24!16.22!SP5;;chr3:14058794..14058815,+!p1@TPRXL!1.22!15.73!TPRXL;;chr1:209979467..209979494,-!p1@IRF6!1.21!17.19!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!1.19!180.68!NR4A1;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.51!FOXA1;;chr2:171571931..171571959,+!p3@SP5!1.18!14.26!SP5;;chr9:4300050..4300118,-!p1@GLIS3!1.15!85.95!GLIS3;;chr11:34664014..34664045,+!p4@EHF!1.15!13.05!EHF;;chr11:47279248..47279264,+!p3@NR1H3!1.13!14.14!NR1H3;;chr1:199996733..199996781,+!p1@NR5A2!1.12!12.19!NR5A2;;chr9:20621927..20621996,-!p3@MLLT3!1.06!17.68!MLLT3;;chr11:65554528..65554546,+!p1@OVOL1!1.04!10.00!OVOL1;;chr2:242556880..242556899,-!p5@THAP4!1.00!9.02!THAP4;;chr18:19749517..19749531,+!p3@GATA6!0.99!15.73!GATA6;;chr1:209979411..209979433,-!p2@IRF6!0.98!8.66!IRF6;;chrX:131623044..131623089,-!p1@MBNL3!0.97!35.60!MBNL3;;chr6:29648890..29648944,-!p1@ZFP57!0.97!8.29!ZFP57;;chr17:46687959..46688007,-!p2@HOXB7!0.96!11.46!HOXB7;;chr13:41593425..41593480,-!p1@ELF1!0.95!51.69!ELF1;;chr2:242556900..242556916,-!p6@THAP4!0.95!7.92!THAP4;;chr18:55102598..55102623,+!p1@ONECUT2!0.95!7.92!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!0.94!12.07!PITX1;;chr17:41277372..41277418,-!p1@BRCA1!0.93!28.53!BRCA1;;chr11:47279504..47279563,+!p1@NR1H3!0.90!16.22!NR1H3;;chr20:43029862..43029900,+!p1@HNF4A!0.90!6.95!HNF4A;;chr1:199996702..199996732,+!p5@NR5A2!0.89!6.83!NR5A2;;chr3:169381183..169381205,-!p4@MECOM!0.89!6.71!MECOM;;chr19:1652555..1652568,-!p2@TCF3!0.87!27.80!TCF3;;chr1:25256756..25256774,-!p1@RUNX3!0.87!12.56!RUNX3;;chr22:42229210..42229229,+!p3@SREBF2!0.85!14.87!SREBF2;;chr18:19749386..19749404,+!p2@GATA6!0.85!9.02!GATA6;;chr9:20622478..20622525,-!p1@MLLT3!0.84!49.50!MLLT3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.84!7.56!L3MBTL4;;chr17:36104873..36104903,-!p3@HNF1B!0.84!5.97!HNF1B;;chr1:200011711..200011752,+!p3@NR5A2!0.84!5.97!NR5A2;;chr17:36105074..36105086,-!p2@HNF1B!0.84!5.85!HNF1B;;chr11:47236584..47236679,+!p1@DDB2!0.83!67.30!DDB2;;chr10:114710098..114710130,+!p2@TCF7L2!0.83!46.21!TCF7L2;;chr6:135502501..135502546,+!p1@MYB!0.83!6.95!MYB;;chr2:63277948..63277974,+!p1@OTX1!0.83!5.73!OTX1;;chr10:97889464..97889494,+!p3@ZNF518A!0.82!10.97!ZNF518A;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.88!TCF12;;chr17:53342311..53342400,+!p1@HLF!0.82!6.46!HLF;;chr12:48298765..48298783,-!p2@VDR!0.81!12.07!VDR;;chr13:73636252..73636307,+!p2@KLF5!0.80!6.22!KLF5;;chr16:88519743..88519754,+!p2@ZFPM1!0.80!5.97!ZFPM1;;chr3:119500941..119500961,+!p1@NR1I2!0.80!5.36!NR1I2;;chr9:22447422..22447483,+!p1@DMRTA1!0.80!5.36!DMRTA1;;chr1:151804244..151804310,-!p1@RORC!0.80!5.36!RORC;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.55!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!0.79!5.12!FOXA3;;chr1:3569072..3569093,+!p1@TP73!0.79!5.12!TP73;;chr16:29818199..29818216,+!p11@MAZ!0.78!8.53!MAZ;;chr13:73636516..73636532,+!p3@KLF5!0.78!5.73!KLF5;;chr2:113994526..113994556,-!p3@PAX8!0.78!5.00!PAX8;;chr7:26191809..26191890,+!p1@NFE2L3!0.77!26.33!NFE2L3;;chr17:41623692..41623715,-!p1@ETV4!0.77!22.68!ETV4;;chr9:4300016..4300039,-!p2@GLIS3!0.77!8.78!GLIS3;;chr11:34663913..34663945,+!p6@EHF!0.77!4.88!EHF;;chr7:28725740..28725778,+!p1@CREB5!0.76!46.94!CREB5;;chr17:61919985..61920012,-!p3@SMARCD2!0.76!12.31!SMARCD2;;chr17:41622765..41622821,-!p2@ETV4!0.76!7.56!ETV4;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.75!HHEX;;chr9:20622444..20622468,-!p2@MLLT3!0.74!15.97!MLLT3;;chr10:135122906..135122921,+!p4@ZNF511!0.74!4.51!ZNF511;;chr2:169312725..169312810,+!p1@CERS6!0.73!118.38!CERS6;;chr19:33793430..33793447,-!p1@CEBPA!0.73!20.36!CEBPA;;chr1:10856639..10856662,-!p2@CASZ1!0.73!4.39!CASZ1;;chr3:14058772..14058785,+!p7@TPRXL!0.73!4.39!TPRXL;;chr3:14061155..14061180,+!p8@TPRXL!0.73!4.39!TPRXL;;chr3: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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg38.nobarcode.bam
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 |id=FF:10483-107A6
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-|library_id_phase_based=1:CNhs11270
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 |name=signet ring carcinoma cell line:NUGC-4
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@@ Line 50: / Line 59: @@
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@@ Line 89: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10483-107A6;search_select_hide=table117:FF:10483-107A6
 }}

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FF:10483-107A6: Difference between revisions

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Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0