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{{f5samples
{{f5samples
|id=FF:10483-107A6
|DRA_sample_Accession=CAGE@SAMD00005154
|name=signet ring carcinoma cell line:NUGC-4
|accession_numbers=CAGE;DRX008003;DRR008875;DRZ000300;DRZ001685;DRZ011650;DRZ013035
|sample_id=10483
|rna_tube_id=107A6
|rna_box=107
|rna_position=A6
|sample_cell_lot=
|sample_cell_catalog=RCB1939
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.11
|rna_od260/280=2.07
|sample_cell_type=unclassifiable
|sample_cell_line=NUGC-4
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=signet ring carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=58.323
|rna_concentration=2.33292
|sample_note=
|profile_hcage=CNhs11270,LSID758,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:3493,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3493
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.59!388.06!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.26!182.39!ELF3;;chr17:36105042..36105060,-!p1@HNF1B!2.17!147.03!HNF1B;;chr1:27240455..27240474,-!p1@NR0B2!1.95!87.17!NR0B2;;chr11:129245526..129245553,+!p1@BARX2!1.89!77.17!BARX2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.78!58.64!LHX1;;chr13:73633131..73633149,+!p1@KLF5!1.76!564.60!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.76!56.20!EHF;;chr11:61520075..61520136,+!p1@C11orf9!1.71!102.41!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.66!52.55!MECOM;;chr8:76319876..76319926,+!p1@HNF4G!1.60!39.14!HNF4G;;chr18:19749541..19749557,+!p1@GATA6!1.54!102.29!GATA6;;chr7:73038839..73038862,-!p1@MLXIPL!1.53!32.67!MLXIPL;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.70!ONECUT3;;chr1:201979703..201979721,+!p2@ELF3!1.50!30.60!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.50!FOXQ1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.40!23.90!ZBTB7C;;chr11:34645791..34645836,+!p3@EHF!1.39!23.65!EHF;;chr20:42984330..42984364,+!p2@HNF4A!1.37!22.19!HNF4A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.80!TFCP2L1;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.82!GRHL2;;chr17:70117153..70117174,+!p1@SOX9!1.24!164.59!SOX9;;chr11:129245736..129245758,+!p2@BARX2!1.24!16.22!BARX2;;chr2:171572786..171572840,+!p2@SP5!1.24!16.22!SP5;;chr3:14058794..14058815,+!p1@TPRXL!1.22!15.73!TPRXL;;chr1:209979467..209979494,-!p1@IRF6!1.21!17.19!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!1.19!180.68!NR4A1;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.51!FOXA1;;chr2:171571931..171571959,+!p3@SP5!1.18!14.26!SP5;;chr9:4300050..4300118,-!p1@GLIS3!1.15!85.95!GLIS3;;chr11:34664014..34664045,+!p4@EHF!1.15!13.05!EHF;;chr11:47279248..47279264,+!p3@NR1H3!1.13!14.14!NR1H3;;chr1:199996733..199996781,+!p1@NR5A2!1.12!12.19!NR5A2;;chr9:20621927..20621996,-!p3@MLLT3!1.06!17.68!MLLT3;;chr11:65554528..65554546,+!p1@OVOL1!1.04!10.00!OVOL1;;chr2:242556880..242556899,-!p5@THAP4!1.00!9.02!THAP4;;chr18:19749517..19749531,+!p3@GATA6!0.99!15.73!GATA6;;chr1:209979411..209979433,-!p2@IRF6!0.98!8.66!IRF6;;chrX:131623044..131623089,-!p1@MBNL3!0.97!35.60!MBNL3;;chr6:29648890..29648944,-!p1@ZFP57!0.97!8.29!ZFP57;;chr17:46687959..46688007,-!p2@HOXB7!0.96!11.46!HOXB7;;chr13:41593425..41593480,-!p1@ELF1!0.95!51.69!ELF1;;chr2:242556900..242556916,-!p6@THAP4!0.95!7.92!THAP4;;chr18:55102598..55102623,+!p1@ONECUT2!0.95!7.92!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!0.94!12.07!PITX1;;chr17:41277372..41277418,-!p1@BRCA1!0.93!28.53!BRCA1;;chr11:47279504..47279563,+!p1@NR1H3!0.90!16.22!NR1H3;;chr20:43029862..43029900,+!p1@HNF4A!0.90!6.95!HNF4A;;chr1:199996702..199996732,+!p5@NR5A2!0.89!6.83!NR5A2;;chr3:169381183..169381205,-!p4@MECOM!0.89!6.71!MECOM;;chr19:1652555..1652568,-!p2@TCF3!0.87!27.80!TCF3;;chr1:25256756..25256774,-!p1@RUNX3!0.87!12.56!RUNX3;;chr22:42229210..42229229,+!p3@SREBF2!0.85!14.87!SREBF2;;chr18:19749386..19749404,+!p2@GATA6!0.85!9.02!GATA6;;chr9:20622478..20622525,-!p1@MLLT3!0.84!49.50!MLLT3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.84!7.56!L3MBTL4;;chr17:36104873..36104903,-!p3@HNF1B!0.84!5.97!HNF1B;;chr1:200011711..200011752,+!p3@NR5A2!0.84!5.97!NR5A2;;chr17:36105074..36105086,-!p2@HNF1B!0.84!5.85!HNF1B;;chr11:47236584..47236679,+!p1@DDB2!0.83!67.30!DDB2;;chr10:114710098..114710130,+!p2@TCF7L2!0.83!46.21!TCF7L2;;chr6:135502501..135502546,+!p1@MYB!0.83!6.95!MYB;;chr2:63277948..63277974,+!p1@OTX1!0.83!5.73!OTX1;;chr10:97889464..97889494,+!p3@ZNF518A!0.82!10.97!ZNF518A;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.88!TCF12;;chr17:53342311..53342400,+!p1@HLF!0.82!6.46!HLF;;chr12:48298765..48298783,-!p2@VDR!0.81!12.07!VDR;;chr13:73636252..73636307,+!p2@KLF5!0.80!6.22!KLF5;;chr16:88519743..88519754,+!p2@ZFPM1!0.80!5.97!ZFPM1;;chr3:119500941..119500961,+!p1@NR1I2!0.80!5.36!NR1I2;;chr9:22447422..22447483,+!p1@DMRTA1!0.80!5.36!DMRTA1;;chr1:151804244..151804310,-!p1@RORC!0.80!5.36!RORC;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.55!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!0.79!5.12!FOXA3;;chr1:3569072..3569093,+!p1@TP73!0.79!5.12!TP73;;chr16:29818199..29818216,+!p11@MAZ!0.78!8.53!MAZ;;chr13:73636516..73636532,+!p3@KLF5!0.78!5.73!KLF5;;chr2:113994526..113994556,-!p3@PAX8!0.78!5.00!PAX8;;chr7:26191809..26191890,+!p1@NFE2L3!0.77!26.33!NFE2L3;;chr17:41623692..41623715,-!p1@ETV4!0.77!22.68!ETV4;;chr9:4300016..4300039,-!p2@GLIS3!0.77!8.78!GLIS3;;chr11:34663913..34663945,+!p6@EHF!0.77!4.88!EHF;;chr7:28725740..28725778,+!p1@CREB5!0.76!46.94!CREB5;;chr17:61919985..61920012,-!p3@SMARCD2!0.76!12.31!SMARCD2;;chr17:41622765..41622821,-!p2@ETV4!0.76!7.56!ETV4;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.75!HHEX;;chr9:20622444..20622468,-!p2@MLLT3!0.74!15.97!MLLT3;;chr10:135122906..135122921,+!p4@ZNF511!0.74!4.51!ZNF511;;chr2:169312725..169312810,+!p1@CERS6!0.73!118.38!CERS6;;chr19:33793430..33793447,-!p1@CEBPA!0.73!20.36!CEBPA;;chr1:10856639..10856662,-!p2@CASZ1!0.73!4.39!CASZ1;;chr3:14058772..14058785,+!p7@TPRXL!0.73!4.39!TPRXL;;chr3:14061155..14061180,+!p8@TPRXL!0.73!4.39!TPRXL;;chr3:69915385..69915438,+!p3@MITF!0.72!4.27!MITF;;chr19:1753535..1753546,+!p3@ONECUT3!0.72!4.27!ONECUT3;;chr11:34664002..34664012,+!p11@EHF!0.72!4.27!EHF;;chr16:88519669..88519726,+!p1@ZFPM1!0.71!42.18!ZFPM1;;chr17:17726907..17726958,-!p2@SREBF1!0.71!29.02!SREBF1;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr12:26277956..26277980,-!p1@BHLHE41!0.71!16.34!BHLHE41;;chr6:1610293..1610310,+!p1@FOXC1!0.71!7.32!FOXC1;;chr17:41622925..41622976,-!p3@ETV4!0.71!6.58!ETV4;;chr6:34208414..34208429,+!p16@HMGA1!0.71!4.15!HMGA1;;chr8:41508327..41508355,-!p1@NKX6-3!0.71!4.15!NKX6-3;;chr11:31832658..31832681,-!p1@PAX6!0.71!4.15!PAX6;;chr9:4299959..4299974,-!p4@GLIS3!0.70!6.71!GLIS3;;chr3:32023232..32023273,+!p1@ZNF860!0.70!5.97!ZNF860;;chr1:214161272..214161322,+!p1@PROX1!0.70!5.85!PROX1;;chr18:55102628..55102646,+!p2@ONECUT2!0.70!4.02!ONECUT2;;chr12:2986275..2986363,-!p1@FOXM1!0.69!44.50!FOXM1;;chr12:48298785..48298828,-!p1@VDR!0.69!23.16!VDR;;chr8:22550982..22550999,-!p1@EGR3!0.69!12.31!EGR3;;chr9:14082760..14082775,-!p6@NFIB!0.69!6.95!NFIB;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.88!HOXC4;;chr17:41623259..41623278,-!p7@ETV4!0.69!4.63!ETV4;;chr10:135122868..135122893,+!p3@ZNF511!0.69!3.90!ZNF511;;chr1:10856665..10856683,-!p4@CASZ1!0.69!3.90!CASZ1;;chr20:22564895..22564910,-!p1@FOXA2!0.69!3.90!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.69!3.90!SIM2;;chr9:22446814..22446830,+!p4@DMRTA1!0.69!3.90!DMRTA1;;chr6:34524093..34524135,-!p1@SPDEF!0.69!3.90!SPDEF;;chr3:12330560..12330579,+!p1@PPARG!0.68!4.51!PPARG;;chr13:73636621..73636647,+!p4@KLF5!0.68!3.78!KLF5;;chr3:71179699..71179744,-!p2@FOXP1!0.67!31.70!FOXP1;;chr11:120107344..120107351,+!p1@POU2F3!0.67!4.63!POU2F3;;chr11:46299199..46299233,+!p1@CREB3L1!0.66!21.21!CREB3L1;;chr11:65554563..65554576,+!p2@OVOL1!0.66!3.54!OVOL1;;chr20:18038521..18038571,-!p1@OVOL2!0.66!3.54!OVOL2;;chr20:43030002..43030028,+!p3@HNF4A!0.66!3.54!HNF4A;;chr7:17338324..17338341,+!p3@AHR!0.65!13.17!AHR;;chr1:59249645..59249656,-!p4@JUN!0.65!9.88!JUN;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.75!PRRX2;;chr2:169312600..169312606,+!p2@CERS6!0.64!5.73!CERS6;;chr3:14058640..14058664,+!p9@TPRXL!0.64!3.41!TPRXL;;chr3:169381545..169381557,-!p10@MECOM!0.64!3.41!MECOM;;chr13:73636334..73636351,+!p6@KLF5!0.64!3.41!KLF5;;chr1:42801540..42801562,-!p4@FOXJ3!0.64!3.41!FOXJ3;;chr3:39195037..39195069,-!p2@CSRNP1!0.63!23.77!CSRNP1;;chr7:28448965..28448994,+!p2@CREB5!0.63!13.17!CREB5;;chr5:76383070..76383117,-!p3@ZBED3!0.63!7.32!ZBED3;;chr19:21265028..21265052,+!p2@ZNF714!0.63!6.46!ZNF714;;chr6:106546808..106546833,+!p3@PRDM1!0.63!4.27!PRDM1;;chr7:73038867..73038878,-!p2@MLXIPL!0.63!3.29!MLXIPL;;chr19:1753520..1753529,+!p2@ONECUT3!0.63!3.29!ONECUT3;;chr1:10856694..10856715,-!p3@CASZ1!0.63!3.29!CASZ1;;chr2:171572483..171572501,+!p5@SP5!0.63!3.29!SP5;;chr2:101436564..101436647,+!p1@NPAS2!0.62!77.05!NPAS2;;chr4:38665810..38665827,+!p1@KLF3!0.62!55.35!KLF3;;chr22:42229246..42229270,+!p2@SREBF2!0.62!47.55!SREBF2;;chr7:17338266..17338282,+!p1@AHR!0.62!40.48!AHR;;chr14:64970670..64970712,-!p3@ZBTB25!0.62!7.68!ZBTB25;;chr11:64073848..64073856,+!p6@ESRRA!0.62!3.17!ESRRA;;chr3:39196117..39196139,-!p4@CSRNP1!0.62!3.17!CSRNP1;;chr19:45971246..45971265,+!p1@FOSB!0.61!69.25!FOSB;;chr17:61920023..61920110,-!p1@SMARCD2!0.61!52.18!SMARCD2;;chr9:14314131..14314147,-!p2@NFIB!0.61!20.36!NFIB;;chr3:168864315..168864339,-!p2@MECOM!0.61!5.49!MECOM;;chr12:26278008..26278024,-!p4@BHLHE41!0.61!3.78!BHLHE41;;chr5:137804405..137804444,+!p3@EGR1!0.61!3.78!EGR1;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.05!FOXC1;;chr7:97840743..97840786,+!p1@BHLHA15!0.61!3.05!BHLHA15;;chr8:102504690..102504704,+!p3@GRHL2!0.61!3.05!GRHL2;;chr16:1031762..1031781,+!p1@SOX8!0.61!3.05!SOX8;;chr12:48276620..48276640,-!p7@VDR!0.61!3.05!VDR;;chr2:8822176..8822196,+!p1@ID2!0.60!513.40!ID2;;chr14:75745523..75745537,+!p1@FOS!0.60!432.08!FOS;;chr6:34204921..34204939,+!p3@HMGA1!0.60!109.97!HMGA1;;chr5:137804484..137804498,+!p2@EGR1!0.60!14.14!EGR1;;chr17:35767301..35767344,+!p2@TADA2A!0.60!8.29!TADA2A;;chr9:4299979..4299996,-!p3@GLIS3!0.60!5.24!GLIS3;;chr17:41622834..41622883,-!p6@ETV4!0.60!3.78!ETV4;;chr2:178128149..178128198,-!p2@NFE2L2!0.59!18.65!NFE2L2;;chr7:149470641..149470694,-!p1@ZNF467!0.59!15.48!ZNF467;;chr1:205600919..205600982,-!p3@ELK4!0.59!12.68!ELK4;;chr6:34204672..34204692,+!p1@HMGA1!0.58!392.33!HMGA1;;chr7:27779729..27779819,+!p1@TAX1BP1!0.58!219.45!TAX1BP1;;chr16:4322832..4322907,-!p1@TFAP4!0.58!25.97!TFAP4;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.58!15.48!TAL1;;chr1:200008734..200008765,+!p2@NR5A2!0.58!2.80!NR5A2;;chr18:45663438..45663456,-!p3@ZBTB7C!0.58!2.80!ZBTB7C;;chr7:156803329..156803362,-!p1@MNX1!0.58!2.80!MNX1;;chr9:20621834..20621884,-!p5@MLLT3!0.58!2.80!MLLT3;;chr7:64467057..64467078,-!p1@ZNF117!0.57!63.03!ZNF117;;chr9:14314566..14314618,-!p1@NFIB!0.57!40.60!NFIB;;chr12:125003087..125003141,-!p4@NCOR2!0.57!3.66!NCOR2;;chr11:19262421..19262455,-!p3@E2F8!0.57!2.68!E2F8;;chr11:64073022..64073056,+!p1@ESRRA!0.56!39.38!ESRRA;;chr2:70142232..70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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
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Line 66: Line 39:
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|rna_box=107
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|rna_concentration=2.33292
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.11
|rna_od260/280=2.07
|rna_position=A6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107A6
|rna_weight_ug=58.323
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB1939
|sample_cell_line=NUGC-4
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=signet ring carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.07402226643474e-246!GO:0005737;cytoplasm;6.95547716262971e-200!GO:0043231;intracellular membrane-bound organelle;6.11460697282961e-193!GO:0043227;membrane-bound organelle;8.89780970380833e-193!GO:0043226;organelle;7.48873978633748e-192!GO:0043229;intracellular organelle;2.26589840085344e-191!GO:0044422;organelle part;6.89033476771868e-166!GO:0044446;intracellular organelle part;2.12344634854915e-164!GO:0044444;cytoplasmic part;1.93420455319611e-149!GO:0032991;macromolecular complex;1.15569567737583e-101!GO:0044237;cellular metabolic process;5.71149225303204e-94!GO:0030529;ribonucleoprotein complex;9.02065583717887e-91!GO:0044238;primary metabolic process;8.18228740226748e-89!GO:0005739;mitochondrion;2.22252944578223e-81!GO:0044428;nuclear part;6.86925799243814e-79!GO:0043233;organelle lumen;6.60635512344358e-78!GO:0031974;membrane-enclosed lumen;6.60635512344358e-78!GO:0003723;RNA binding;6.81268349306383e-76!GO:0043170;macromolecule metabolic process;3.74185224180521e-72!GO:0005634;nucleus;6.65610235532005e-67!GO:0031090;organelle membrane;2.80647012522055e-65!GO:0005515;protein binding;8.27357482270999e-57!GO:0005840;ribosome;9.21977028506659e-56!GO:0044429;mitochondrial part;5.28732135625167e-55!GO:0006396;RNA processing;4.47838876323321e-53!GO:0043234;protein complex;3.21390181428662e-50!GO:0031967;organelle envelope;4.5157275221847e-50!GO:0006412;translation;7.80481691930081e-50!GO:0031975;envelope;1.2268660064652e-49!GO:0003735;structural constituent of ribosome;7.42548701151839e-49!GO:0009058;biosynthetic process;1.13785339810266e-48!GO:0031981;nuclear lumen;5.95504198981726e-47!GO:0015031;protein transport;1.93364361014665e-46!GO:0019538;protein metabolic process;3.06933276203575e-46!GO:0033036;macromolecule localization;1.01092493764921e-45!GO:0005829;cytosol;1.85982781494217e-43!GO:0044249;cellular biosynthetic process;2.74018911814374e-42!GO:0009059;macromolecule biosynthetic process;3.8204412598777e-42!GO:0045184;establishment of protein localization;4.59548388262412e-42!GO:0044267;cellular protein metabolic process;5.22416200751927e-42!GO:0008104;protein localization;8.76356345378309e-42!GO:0044260;cellular macromolecule metabolic process;1.74667632879111e-41!GO:0033279;ribosomal subunit;3.25232798575577e-40!GO:0016071;mRNA metabolic process;9.48850188172037e-40!GO:0016043;cellular component organization and biogenesis;5.67847977859654e-39!GO:0043283;biopolymer metabolic process;1.13026432073915e-37!GO:0043228;non-membrane-bound organelle;4.66360824911783e-37!GO:0043232;intracellular non-membrane-bound organelle;4.66360824911783e-37!GO:0006397;mRNA processing;1.68440021661121e-36!GO:0008380;RNA splicing;7.10659656981077e-36!GO:0005740;mitochondrial envelope;1.39613251295882e-35!GO:0006259;DNA metabolic process;5.11600515248265e-34!GO:0019866;organelle inner membrane;7.82565718796419e-34!GO:0031966;mitochondrial membrane;1.59876329882148e-33!GO:0065003;macromolecular complex assembly;1.63012132689617e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.98228967914329e-32!GO:0046907;intracellular transport;4.45363508300019e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.77141697162919e-32!GO:0005743;mitochondrial inner membrane;1.00086555800706e-31!GO:0010467;gene expression;2.57829761787753e-31!GO:0006996;organelle organization and biogenesis;2.01088741658273e-29!GO:0022607;cellular component assembly;4.95888364311432e-29!GO:0006886;intracellular protein transport;4.95888364311432e-29!GO:0012505;endomembrane system;5.54109626951899e-29!GO:0000166;nucleotide binding;2.20147001386016e-28!GO:0005654;nucleoplasm;2.12272210632111e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.64074505977979e-27!GO:0007049;cell cycle;2.23023736054549e-26!GO:0005681;spliceosome;2.78836875310891e-25!GO:0031980;mitochondrial lumen;1.75689028055869e-24!GO:0005759;mitochondrial matrix;1.75689028055869e-24!GO:0005783;endoplasmic reticulum;2.2284600267383e-23!GO:0006119;oxidative phosphorylation;2.81369203173102e-23!GO:0006974;response to DNA damage stimulus;8.52151407256476e-23!GO:0044445;cytosolic part;2.93529038155848e-22!GO:0005730;nucleolus;2.18089434426734e-21!GO:0044451;nucleoplasm part;2.27703075425512e-21!GO:0015935;small ribosomal subunit;3.16495553735185e-21!GO:0044265;cellular macromolecule catabolic process;4.38434805807764e-21!GO:0051649;establishment of cellular localization;5.71858602647489e-21!GO:0051641;cellular localization;5.92083572509968e-21!GO:0044432;endoplasmic reticulum part;8.0803396299781e-21!GO:0016462;pyrophosphatase activity;9.83537355251821e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.34260486818669e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.88487350448927e-20!GO:0005694;chromosome;3.24811217352154e-20!GO:0017111;nucleoside-triphosphatase activity;3.83358036096373e-20!GO:0015934;large ribosomal subunit;4.12984182895563e-20!GO:0044455;mitochondrial membrane part;4.35761030375417e-20!GO:0017076;purine nucleotide binding;1.35744229676451e-19!GO:0016874;ligase activity;1.46164670807431e-19!GO:0032553;ribonucleotide binding;2.32021479217667e-19!GO:0032555;purine ribonucleotide binding;2.32021479217667e-19!GO:0000278;mitotic cell cycle;2.91017325668115e-19!GO:0003676;nucleic acid binding;3.67102629662266e-19!GO:0022402;cell cycle process;8.98908242929412e-19!GO:0006281;DNA repair;9.65718695226956e-19!GO:0044248;cellular catabolic process;1.14131820088044e-18!GO:0051186;cofactor metabolic process;2.28951949171986e-18!GO:0009719;response to endogenous stimulus;3.65484158062475e-18!GO:0022618;protein-RNA complex assembly;6.01822122001944e-18!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.54292000650176e-18!GO:0005746;mitochondrial respiratory chain;8.96571978707268e-18!GO:0005789;endoplasmic reticulum membrane;9.68231929245666e-18!GO:0044427;chromosomal part;1.53229060328775e-17!GO:0006457;protein folding;1.82976922060277e-17!GO:0005524;ATP binding;2.4629648697426e-17!GO:0030554;adenyl nucleotide binding;3.03537607771825e-17!GO:0032559;adenyl ribonucleotide binding;3.38929265315182e-17!GO:0009057;macromolecule catabolic process;3.50483824709726e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.37522787302289e-17!GO:0005761;mitochondrial ribosome;7.84641912233562e-17!GO:0000313;organellar ribosome;7.84641912233562e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.29154775230618e-16!GO:0006260;DNA replication;2.94625478332732e-16!GO:0008135;translation factor activity, nucleic acid binding;6.59207948903844e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.21548792600286e-15!GO:0003954;NADH dehydrogenase activity;1.21548792600286e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.21548792600286e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.72556721773369e-15!GO:0051301;cell division;2.18567957917422e-15!GO:0043285;biopolymer catabolic process;2.42094519727151e-15!GO:0019941;modification-dependent protein catabolic process;2.49917366078174e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.49917366078174e-15!GO:0006732;coenzyme metabolic process;2.76276684740855e-15!GO:0016887;ATPase activity;3.31999101399323e-15!GO:0006512;ubiquitin cycle;4.86009613397493e-15!GO:0042254;ribosome biogenesis and assembly;5.00268373839165e-15!GO:0044257;cellular protein catabolic process;5.05178230867946e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.0594721895744e-15!GO:0000087;M phase of mitotic cell cycle;6.68695912010433e-15!GO:0006605;protein targeting;9.7164685916389e-15!GO:0051276;chromosome organization and biogenesis;1.14940480915432e-14!GO:0008134;transcription factor binding;1.17264176474806e-14!GO:0007067;mitosis;1.33846106683995e-14!GO:0042623;ATPase activity, coupled;1.56472886431978e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.94744691952233e-14!GO:0005635;nuclear envelope;2.03681855666269e-14!GO:0005794;Golgi apparatus;2.35288882327645e-14!GO:0022403;cell cycle phase;2.38598466956231e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08599201212558e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.41036393267243e-14!GO:0042773;ATP synthesis coupled electron transport;5.41036393267243e-14!GO:0031965;nuclear membrane;7.42338660498304e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.35180210431911e-14!GO:0043412;biopolymer modification;9.06369621858035e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.75758271528e-14!GO:0000375;RNA splicing, via transesterification reactions;9.75758271528e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.75758271528e-14!GO:0048770;pigment granule;1.0530110242456e-13!GO:0042470;melanosome;1.0530110242456e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.53987972357347e-13!GO:0045271;respiratory chain complex I;1.53987972357347e-13!GO:0005747;mitochondrial respiratory chain complex I;1.53987972357347e-13!GO:0044453;nuclear membrane part;3.24996992498549e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.0322194668975e-13!GO:0000279;M phase;2.42892830816772e-12!GO:0030163;protein catabolic process;3.18611055812767e-12!GO:0051082;unfolded protein binding;3.26962115633305e-12!GO:0016604;nuclear body;6.51179835910866e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;8.49493499853968e-12!GO:0005643;nuclear pore;9.70463793495018e-12!GO:0004386;helicase activity;1.03791926504244e-11!GO:0048193;Golgi vesicle transport;1.11312293524015e-11!GO:0016070;RNA metabolic process;1.34473491357641e-11!GO:0009055;electron carrier activity;1.51855505081088e-11!GO:0003743;translation initiation factor activity;1.65889230438492e-11!GO:0009056;catabolic process;1.82737106165121e-11!GO:0016491;oxidoreductase activity;1.87961961747171e-11!GO:0050657;nucleic acid transport;2.32499683294723e-11!GO:0051236;establishment of RNA localization;2.32499683294723e-11!GO:0050658;RNA transport;2.32499683294723e-11!GO:0006464;protein modification process;2.61212493603895e-11!GO:0006403;RNA localization;2.63099857250529e-11!GO:0006323;DNA packaging;2.78617788557551e-11!GO:0006413;translational initiation;3.07391025222572e-11!GO:0006399;tRNA metabolic process;3.80055393951486e-11!GO:0006446;regulation of translational initiation;5.73724401128337e-11!GO:0016072;rRNA metabolic process;6.97133141294316e-11!GO:0000785;chromatin;7.12065845333329e-11!GO:0065002;intracellular protein transport across a membrane;7.25476484383361e-11!GO:0006366;transcription from RNA polymerase II promoter;7.66394707891528e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.85623208461589e-11!GO:0006913;nucleocytoplasmic transport;1.23830371302832e-10!GO:0016740;transferase activity;1.3669288941445e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.39495537225648e-10!GO:0051169;nuclear transport;2.71073441760872e-10!GO:0016192;vesicle-mediated transport;3.08183382998478e-10!GO:0006364;rRNA processing;3.11569034045239e-10!GO:0008026;ATP-dependent helicase activity;5.3432623593644e-10!GO:0006461;protein complex assembly;5.67217888326743e-10!GO:0046930;pore complex;6.96157744425207e-10!GO:0051188;cofactor biosynthetic process;7.80520278392524e-10!GO:0065004;protein-DNA complex assembly;1.08958353513145e-09!GO:0006915;apoptosis;1.24274004686254e-09!GO:0006333;chromatin assembly or disassembly;1.35947975855684e-09!GO:0012501;programmed cell death;1.42534400665986e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.569795248683e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.64403508818051e-09!GO:0006163;purine nucleotide metabolic process;1.71737683340384e-09!GO:0016787;hydrolase activity;1.74392834788529e-09!GO:0051028;mRNA transport;1.82721290691406e-09!GO:0051726;regulation of cell cycle;2.00576519227771e-09!GO:0009259;ribonucleotide metabolic process;2.30630388105984e-09!GO:0009060;aerobic respiration;2.46811203685169e-09!GO:0045333;cellular respiration;2.94756567695866e-09!GO:0008639;small protein conjugating enzyme activity;3.11181514303615e-09!GO:0000074;regulation of progression through cell cycle;3.24302454027638e-09!GO:0005793;ER-Golgi intermediate compartment;5.06578286799978e-09!GO:0003712;transcription cofactor activity;6.59502414527156e-09!GO:0004842;ubiquitin-protein ligase activity;7.39304166269372e-09!GO:0016607;nuclear speck;7.60972473382002e-09!GO:0006091;generation of precursor metabolites and energy;9.53884083281958e-09!GO:0043687;post-translational protein modification;1.04617165123598e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.07996021723336e-08!GO:0046034;ATP metabolic process;1.11486408261307e-08!GO:0009141;nucleoside triphosphate metabolic process;1.12581697653682e-08!GO:0009150;purine ribonucleotide metabolic process;1.14229715136888e-08!GO:0016779;nucleotidyltransferase activity;1.25598867632672e-08!GO:0005768;endosome;1.28486486970539e-08!GO:0019829;cation-transporting ATPase activity;1.28567500487831e-08!GO:0043566;structure-specific DNA binding;1.37213250583543e-08!GO:0015986;ATP synthesis coupled proton transport;1.41895768512305e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41895768512305e-08!GO:0009108;coenzyme biosynthetic process;1.47730601843652e-08!GO:0019787;small conjugating protein ligase activity;1.73344488595455e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.88120697237923e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.88120697237923e-08!GO:0008219;cell death;2.17273666640458e-08!GO:0016265;death;2.17273666640458e-08!GO:0006164;purine nucleotide biosynthetic process;2.88526965084953e-08!GO:0008565;protein transporter activity;4.08162163558395e-08!GO:0007005;mitochondrion organization and biogenesis;4.31310023615296e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.56843508742101e-08!GO:0003697;single-stranded DNA binding;7.47163943603915e-08!GO:0016881;acid-amino acid ligase activity;8.72506586746691e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14530317567202e-07!GO:0009260;ribonucleotide biosynthetic process;1.16605807040784e-07!GO:0006099;tricarboxylic acid cycle;1.32178417138228e-07!GO:0046356;acetyl-CoA catabolic process;1.32178417138228e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.01021510677493e-07!GO:0006754;ATP biosynthetic process;2.23596719217215e-07!GO:0006753;nucleoside phosphate metabolic process;2.23596719217215e-07!GO:0017038;protein import;2.2705238169564e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.33376560853947e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.33376560853947e-07!GO:0005770;late endosome;2.36475319044761e-07!GO:0032446;protein modification by small protein conjugation;2.47835421855207e-07!GO:0016567;protein ubiquitination;2.85788313987352e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.18720959329863e-07!GO:0006261;DNA-dependent DNA replication;3.67417579272296e-07!GO:0006082;organic acid metabolic process;3.91079877821954e-07!GO:0006334;nucleosome assembly;4.04166044393739e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.15422796374608e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.15422796374608e-07!GO:0019752;carboxylic acid metabolic process;5.29792879470391e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.29792879470391e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.29792879470391e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.29792879470391e-07!GO:0044431;Golgi apparatus part;5.84640587913257e-07!GO:0006084;acetyl-CoA metabolic process;6.68950104269615e-07!GO:0045259;proton-transporting ATP synthase complex;7.00751032109354e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.16904416122623e-07!GO:0016568;chromatin modification;7.16904416122623e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.93182961033016e-07!GO:0031497;chromatin assembly;8.22884024748825e-07!GO:0006752;group transfer coenzyme metabolic process;8.72526182321822e-07!GO:0043038;amino acid activation;8.74500134015492e-07!GO:0006418;tRNA aminoacylation for protein translation;8.74500134015492e-07!GO:0043039;tRNA aminoacylation;8.74500134015492e-07!GO:0009117;nucleotide metabolic process;9.19270217206556e-07!GO:0030532;small nuclear ribonucleoprotein complex;9.90305754285598e-07!GO:0043623;cellular protein complex assembly;1.11921176410631e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14793805825047e-06!GO:0044255;cellular lipid metabolic process;1.2878309589514e-06!GO:0008610;lipid biosynthetic process;1.33205950678397e-06!GO:0000245;spliceosome assembly;1.40640532241307e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.51486116901493e-06!GO:0005667;transcription factor complex;1.96463095090204e-06!GO:0044440;endosomal part;2.1028282481094e-06!GO:0010008;endosome membrane;2.1028282481094e-06!GO:0030120;vesicle coat;2.39358103227253e-06!GO:0030662;coated vesicle membrane;2.39358103227253e-06!GO:0009109;coenzyme catabolic process;2.53148611943101e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.90426668558903e-06!GO:0004298;threonine endopeptidase activity;3.08418997020023e-06!GO:0008654;phospholipid biosynthetic process;3.92876839614994e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.96362106827975e-06!GO:0000775;chromosome, pericentric region;4.2879223160107e-06!GO:0051427;hormone receptor binding;4.59649485429236e-06!GO:0005762;mitochondrial large ribosomal subunit;4.87412618205118e-06!GO:0000315;organellar large ribosomal subunit;4.87412618205118e-06!GO:0015630;microtubule cytoskeleton;5.75406440486429e-06!GO:0000314;organellar small ribosomal subunit;6.86780289147321e-06!GO:0005763;mitochondrial small ribosomal subunit;6.86780289147321e-06!GO:0048475;coated membrane;7.11034631431735e-06!GO:0030117;membrane coat;7.11034631431735e-06!GO:0042981;regulation of apoptosis;7.21865047655408e-06!GO:0005657;replication fork;7.23838409344544e-06!GO:0051187;cofactor catabolic process;7.61019085934634e-06!GO:0016853;isomerase activity;7.96950944368877e-06!GO:0003724;RNA helicase activity;8.0269323134479e-06!GO:0051246;regulation of protein metabolic process;8.3268764415993e-06!GO:0007051;spindle organization and biogenesis;8.92918228021747e-06!GO:0003690;double-stranded DNA binding;9.42517043976078e-06!GO:0000139;Golgi membrane;1.02827510572522e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.02827510572522e-05!GO:0035257;nuclear hormone receptor binding;1.09655178111189e-05!GO:0043067;regulation of programmed cell death;1.12400692475292e-05!GO:0006613;cotranslational protein targeting to membrane;1.19496174681134e-05!GO:0005819;spindle;1.19496174681134e-05!GO:0000151;ubiquitin ligase complex;1.21001569183443e-05!GO:0051329;interphase of mitotic cell cycle;1.2948038014637e-05!GO:0045454;cell redox homeostasis;1.45434497732423e-05!GO:0051168;nuclear export;1.46092829700906e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.48361018950385e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.70854231829293e-05!GO:0006793;phosphorus metabolic process;1.7684457233688e-05!GO:0006796;phosphate metabolic process;1.7684457233688e-05!GO:0016126;sterol biosynthetic process;2.49980489896878e-05!GO:0006302;double-strand break repair;2.71144789675071e-05!GO:0005815;microtubule organizing center;3.25320824752083e-05!GO:0050662;coenzyme binding;3.56443805135267e-05!GO:0016563;transcription activator activity;3.62629209527271e-05!GO:0008033;tRNA processing;3.71962221092835e-05!GO:0003713;transcription coactivator activity;4.28714344658239e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.2987344139629e-05!GO:0005813;centrosome;4.31881849322096e-05!GO:0003899;DNA-directed RNA polymerase activity;4.31881849322096e-05!GO:0051325;interphase;5.01077278518463e-05!GO:0051170;nuclear import;5.59655633339094e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.59655633339094e-05!GO:0015399;primary active transmembrane transporter activity;5.59655633339094e-05!GO:0043021;ribonucleoprotein binding;6.20986929731821e-05!GO:0006612;protein targeting to membrane;6.66753919567526e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.98837692137902e-05!GO:0006629;lipid metabolic process;6.98938295802399e-05!GO:0008094;DNA-dependent ATPase activity;7.0648785648209e-05!GO:0006414;translational elongation;7.23408567826104e-05!GO:0048471;perinuclear region of cytoplasm;8.38564540701091e-05!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;8.66223647879364e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000102989498520726!GO:0044452;nucleolar part;0.00011100137838846!GO:0008186;RNA-dependent ATPase activity;0.000123393179729974!GO:0005048;signal sequence binding;0.000136266220607761!GO:0006066;alcohol metabolic process;0.000136409884344356!GO:0005525;GTP binding;0.000143868897271706!GO:0006118;electron transport;0.000144484405817846!GO:0006606;protein import into nucleus;0.000151019873735066!GO:0000786;nucleosome;0.000151019873735066!GO:0042802;identical protein binding;0.00015583844448824!GO:0000075;cell cycle checkpoint;0.000161413826143087!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000167068440733491!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000168417853350425!GO:0016310;phosphorylation;0.000169749021346919!GO:0015992;proton transport;0.000173270147189808!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000178756445901603!GO:0006695;cholesterol biosynthetic process;0.000181308172685752!GO:0006401;RNA catabolic process;0.000188757782638488!GO:0046474;glycerophospholipid biosynthetic process;0.000204383131062737!GO:0006818;hydrogen transport;0.000207238577434464!GO:0048037;cofactor binding;0.000225290820218055!GO:0006916;anti-apoptosis;0.000261204685309896!GO:0031988;membrane-bound vesicle;0.000266987422142821!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000288893603376672!GO:0031324;negative regulation of cellular metabolic process;0.000302434836761711!GO:0046489;phosphoinositide biosynthetic process;0.000305893097736258!GO:0051052;regulation of DNA metabolic process;0.000322515123157829!GO:0004004;ATP-dependent RNA helicase activity;0.000349188016510796!GO:0016023;cytoplasmic membrane-bound vesicle;0.000355268664665531!GO:0031968;organelle outer membrane;0.000367730113421983!GO:0043069;negative regulation of programmed cell death;0.00037556748159398!GO:0003729;mRNA binding;0.000387189849342018!GO:0043492;ATPase activity, coupled to movement of substances;0.000397188816868753!GO:0043681;protein import into mitochondrion;0.000414121758789242!GO:0019867;outer membrane;0.000438381461958189!GO:0043066;negative regulation of apoptosis;0.000446014278945801!GO:0005885;Arp2/3 protein complex;0.000454190818632946!GO:0006626;protein targeting to mitochondrion;0.000455506174516009!GO:0003924;GTPase activity;0.000467751119573548!GO:0003714;transcription corepressor activity;0.000469107457960848!GO:0051287;NAD binding;0.000499097077972458!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000514154711721035!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000516478636925636!GO:0006650;glycerophospholipid metabolic process;0.000530155095507681!GO:0005741;mitochondrial outer membrane;0.000568851467468727!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000575206338110672!GO:0005798;Golgi-associated vesicle;0.000582754849879827!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00059721997573439!GO:0046467;membrane lipid biosynthetic process;0.000603606027056653!GO:0005996;monosaccharide metabolic process;0.000605263541352623!GO:0009892;negative regulation of metabolic process;0.000614101795748346!GO:0004518;nuclease activity;0.000674718900592327!GO:0016741;transferase activity, transferring one-carbon groups;0.000677676742785295!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000691515388917543!GO:0008629;induction of apoptosis by intracellular signals;0.000696766782536542!GO:0019318;hexose metabolic process;0.000698149543475778!GO:0003684;damaged DNA binding;0.000742356053543135!GO:0016859;cis-trans isomerase activity;0.000754005419900625!GO:0045893;positive regulation of transcription, DNA-dependent;0.000772994300985412!GO:0005788;endoplasmic reticulum lumen;0.000801863609019424!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000807105477811827!GO:0044262;cellular carbohydrate metabolic process;0.000872802544216772!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000879941278871706!GO:0016564;transcription repressor activity;0.000897803622488462!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000906398795553302!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000906398795553302!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000906398795553302!GO:0046164;alcohol catabolic process;0.000906398795553302!GO:0008168;methyltransferase activity;0.00092398727111122!GO:0022890;inorganic cation transmembrane transporter activity;0.000938951336601783!GO:0005773;vacuole;0.000973560811329077!GO:0006497;protein amino acid lipidation;0.000991263810009417!GO:0030384;phosphoinositide metabolic process;0.000991263810009417!GO:0007264;small GTPase mediated signal transduction;0.00102510507229086!GO:0007088;regulation of mitosis;0.0010302739787732!GO:0003682;chromatin binding;0.00104623689657806!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010549253935633!GO:0030867;rough endoplasmic reticulum membrane;0.00106217815267573!GO:0019843;rRNA binding;0.00108750639528567!GO:0003678;DNA helicase activity;0.00109292845658228!GO:0006402;mRNA catabolic process;0.00115141555403911!GO:0000776;kinetochore;0.00117614420197298!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00117800634751446!GO:0045941;positive regulation of transcription;0.00118354771409306!GO:0016363;nuclear matrix;0.00119740210231808!GO:0042770;DNA damage response, signal transduction;0.00120787133493156!GO:0048523;negative regulation of cellular process;0.00123627958809446!GO:0033116;ER-Golgi intermediate compartment membrane;0.00124623296706191!GO:0009165;nucleotide biosynthetic process;0.00130059945510261!GO:0032561;guanyl ribonucleotide binding;0.00130424579727437!GO:0019001;guanyl nucleotide binding;0.00130424579727437!GO:0051920;peroxiredoxin activity;0.00132025789821667!GO:0007059;chromosome segregation;0.00132643242290096!GO:0035258;steroid hormone receptor binding;0.00136679584866925!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00139153724979743!GO:0046365;monosaccharide catabolic process;0.00139153724979743!GO:0006611;protein export from nucleus;0.00143240559295841!GO:0006352;transcription initiation;0.00143240559295841!GO:0051789;response to protein stimulus;0.0014449558883053!GO:0006986;response to unfolded protein;0.0014449558883053!GO:0031252;leading edge;0.00144682816843098!GO:0006839;mitochondrial transport;0.00154549789743358!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00157737345109701!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00157737345109701!GO:0006506;GPI anchor biosynthetic process;0.00158959842188453!GO:0031982;vesicle;0.00175943605062496!GO:0030659;cytoplasmic vesicle membrane;0.0017615590377823!GO:0045786;negative regulation of progression through cell cycle;0.00176161415101504!GO:0006520;amino acid metabolic process;0.00178249864926738!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00180994036548648!GO:0015002;heme-copper terminal oxidase activity;0.00180994036548648!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00180994036548648!GO:0004129;cytochrome-c oxidase activity;0.00180994036548648!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00187277276416691!GO:0065009;regulation of a molecular function;0.00189003539451115!GO:0003746;translation elongation factor activity;0.00197366818308839!GO:0000059;protein import into nucleus, docking;0.00197970748102256!GO:0048500;signal recognition particle;0.0020481597070898!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00205314908549906!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00208045550055247!GO:0004527;exonuclease activity;0.00211751853650318!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00211751853650318!GO:0006643;membrane lipid metabolic process;0.00213756286015425!GO:0005769;early endosome;0.00213787443292985!GO:0005684;U2-dependent spliceosome;0.00217177537980751!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00229734442603711!GO:0019320;hexose catabolic process;0.00236189810831557!GO:0032508;DNA duplex unwinding;0.00236189810831557!GO:0032392;DNA geometric change;0.00236189810831557!GO:0031410;cytoplasmic vesicle;0.00241909897030332!GO:0006891;intra-Golgi vesicle-mediated transport;0.00241909897030332!GO:0030176;integral to endoplasmic reticulum membrane;0.00242376279933487!GO:0006310;DNA recombination;0.00243718015525475!GO:0005777;peroxisome;0.00257745000087372!GO:0042579;microbody;0.00257745000087372!GO:0008312;7S RNA binding;0.00265950088286797!GO:0031072;heat shock protein binding;0.00285923246257386!GO:0046483;heterocycle metabolic process;0.0028652571987582!GO:0019899;enzyme binding;0.00302315947652626!GO:0031902;late endosome membrane;0.00302315947652626!GO:0000287;magnesium ion binding;0.00311535810728664!GO:0007006;mitochondrial membrane organization and biogenesis;0.00314240145384683!GO:0006505;GPI anchor metabolic process;0.00314240145384683!GO:0030658;transport vesicle membrane;0.00325967027828136!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00335786149275609!GO:0006405;RNA export from nucleus;0.00335786149275609!GO:0000086;G2/M transition of mitotic cell cycle;0.00355959106556542!GO:0007052;mitotic spindle organization and biogenesis;0.00392352282088918!GO:0008139;nuclear localization sequence binding;0.00395217924042851!GO:0000049;tRNA binding;0.00396366818137891!GO:0051252;regulation of RNA metabolic process;0.00402094370514517!GO:0030118;clathrin coat;0.00422338359018558!GO:0042158;lipoprotein biosynthetic process;0.00423273648216858!GO:0006007;glucose catabolic process;0.00444807716132887!GO:0000323;lytic vacuole;0.00460346054945441!GO:0005764;lysosome;0.00460346054945441!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0046289746003847!GO:0006595;polyamine metabolic process;0.00475364334175315!GO:0048522;positive regulation of cellular process;0.00479452559542626!GO:0044433;cytoplasmic vesicle part;0.00481278691578805!GO:0009451;RNA modification;0.00482322956450089!GO:0006268;DNA unwinding during replication;0.00482332813511705!GO:0006740;NADPH regeneration;0.00482332813511705!GO:0006098;pentose-phosphate shunt;0.00482332813511705!GO:0044438;microbody part;0.00485276690019747!GO:0044439;peroxisomal part;0.00485276690019747!GO:0006383;transcription from RNA polymerase III promoter;0.00504393972798868!GO:0030880;RNA polymerase complex;0.0050800041581683!GO:0043596;nuclear replication fork;0.00525469179491376!GO:0005791;rough endoplasmic reticulum;0.00529055974030079!GO:0043284;biopolymer biosynthetic process;0.00536933041817808!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00538794110330753!GO:0045047;protein targeting to ER;0.00538794110330753!GO:0031124;mRNA 3'-end processing;0.005433155441812!GO:0030133;transport vesicle;0.00547600087056012!GO:0044275;cellular carbohydrate catabolic process;0.00551336014620749!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00558913510720285!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.005713592141557!GO:0030660;Golgi-associated vesicle membrane;0.00573860953753894!GO:0007017;microtubule-based process;0.00613009555968063!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00614936994895144!GO:0030521;androgen receptor signaling pathway;0.00614936994895144!GO:0012506;vesicle membrane;0.0064734353486845!GO:0016251;general RNA polymerase II transcription factor activity;0.00647389478535281!GO:0006767;water-soluble vitamin metabolic process;0.00661151575929999!GO:0031903;microbody membrane;0.00666576380584646!GO:0005778;peroxisomal membrane;0.00666576380584646!GO:0015631;tubulin binding;0.00670678561235035!GO:0008022;protein C-terminus binding;0.00681525813552309!GO:0006733;oxidoreduction coenzyme metabolic process;0.00716634842687787!GO:0051087;chaperone binding;0.00729599245537715!GO:0007093;mitotic cell cycle checkpoint;0.00780042570282696!GO:0005637;nuclear inner membrane;0.00786980252861871!GO:0007243;protein kinase cascade;0.00850069735520121!GO:0048487;beta-tubulin binding;0.00857464132578376!GO:0006950;response to stress;0.00895565981993438!GO:0006644;phospholipid metabolic process;0.00906040143290795!GO:0005758;mitochondrial intermembrane space;0.00914278920725801!GO:0045045;secretory pathway;0.00921919229247465!GO:0000228;nuclear chromosome;0.00941213149566558!GO:0006749;glutathione metabolic process;0.00941213149566558!GO:0030663;COPI coated vesicle membrane;0.00941213149566558!GO:0030126;COPI vesicle coat;0.00941213149566558!GO:0032594;protein transport within lipid bilayer;0.00941213149566558!GO:0032907;transforming growth factor-beta3 production;0.00941213149566558!GO:0032596;protein transport into lipid raft;0.00941213149566558!GO:0032910;regulation of transforming growth factor-beta3 production;0.00941213149566558!GO:0032595;B cell receptor transport within lipid bilayer;0.00941213149566558!GO:0033606;chemokine receptor transport within lipid bilayer;0.00941213149566558!GO:0032600;chemokine receptor transport out of lipid raft;0.00941213149566558!GO:0032599;protein transport out of lipid raft;0.00941213149566558!GO:0032597;B cell receptor transport into lipid raft;0.00941213149566558!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00941213149566558!GO:0003702;RNA polymerase II transcription factor activity;0.00947766385950399!GO:0006144;purine base metabolic process;0.00953320812071204!GO:0016481;negative regulation of transcription;0.00960968617307926!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00960968617307926!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00964530325110611!GO:0000428;DNA-directed RNA polymerase complex;0.00964530325110611!GO:0043022;ribosome binding;0.00971143663356917!GO:0003711;transcription elongation regulator activity;0.00975199780437415!GO:0000209;protein polyubiquitination;0.00990491987355528!GO:0016125;sterol metabolic process;0.0100332300578584!GO:0006284;base-excision repair;0.0103576279134203!GO:0030119;AP-type membrane coat adaptor complex;0.0105553518984484!GO:0006400;tRNA modification;0.0106325630452266!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0106636007122817!GO:0006275;regulation of DNA replication;0.0107592382284707!GO:0016197;endosome transport;0.010788901879877!GO:0005905;coated pit;0.0108690962325543!GO:0005832;chaperonin-containing T-complex;0.0108832126925165!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0111171694819481!GO:0004177;aminopeptidase activity;0.0113463290596068!GO:0009303;rRNA transcription;0.0115070527037455!GO:0009112;nucleobase metabolic process;0.0116804648696629!GO:0043488;regulation of mRNA stability;0.0118555112853453!GO:0043487;regulation of RNA stability;0.0118555112853453!GO:0046983;protein dimerization activity;0.0120300113266061!GO:0000339;RNA cap binding;0.0121706491502248!GO:0048519;negative regulation of biological process;0.0122619359204958!GO:0005874;microtubule;0.0124590821698575!GO:0031123;RNA 3'-end processing;0.0125234988477574!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0126471840761886!GO:0004532;exoribonuclease activity;0.0131735348030826!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0131735348030826!GO:0030131;clathrin adaptor complex;0.0131781906100264!GO:0008637;apoptotic mitochondrial changes;0.0137074891005868!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0138222643859627!GO:0004540;ribonuclease activity;0.0145778725142389!GO:0016584;nucleosome positioning;0.0147497064008102!GO:0042393;histone binding;0.014976688493062!GO:0016485;protein processing;0.0151525035540504!GO:0046966;thyroid hormone receptor binding;0.0152284386742653!GO:0006378;mRNA polyadenylation;0.0154185353617494!GO:0006730;one-carbon compound metabolic process;0.0163824682006687!GO:0000096;sulfur amino acid metabolic process;0.0165233726734632!GO:0030134;ER to Golgi transport vesicle;0.0165233726734632!GO:0005876;spindle microtubule;0.0166474751140693!GO:0046519;sphingoid metabolic process;0.0167390920300548!GO:0004674;protein serine/threonine kinase activity;0.0170013329865058!GO:0006376;mRNA splice site selection;0.0170013329865058!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0170013329865058!GO:0008234;cysteine-type peptidase activity;0.0172280985062952!GO:0000792;heterochromatin;0.0174909327480101!GO:0000910;cytokinesis;0.0174909327480101!GO:0008408;3'-5' exonuclease activity;0.017618509963121!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0179944971287239!GO:0016746;transferase activity, transferring acyl groups;0.0180186263650649!GO:0006519;amino acid and derivative metabolic process;0.0180186263650649!GO:0031570;DNA integrity checkpoint;0.0181054013491266!GO:0008632;apoptotic program;0.0181155469896623!GO:0043624;cellular protein complex disassembly;0.0182863131759794!GO:0001889;liver development;0.018326146868015!GO:0000725;recombinational repair;0.0186767605672273!GO:0000724;double-strand break repair via homologous recombination;0.0186767605672273!GO:0051540;metal cluster binding;0.0190140442525105!GO:0051536;iron-sulfur cluster binding;0.0190140442525105!GO:0008538;proteasome activator activity;0.0190489594012716!GO:0003756;protein disulfide isomerase activity;0.019345518223971!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.019345518223971!GO:0000152;nuclear ubiquitin ligase complex;0.0194048315154297!GO:0006289;nucleotide-excision repair;0.0198228760829831!GO:0006739;NADP metabolic process;0.019889989949584!GO:0004576;oligosaccharyl transferase activity;0.0200277376030107!GO:0050794;regulation of cellular process;0.0200367940193543!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0201426778396005!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0202293464528981!GO:0030127;COPII vesicle coat;0.0203366657205999!GO:0012507;ER to Golgi transport vesicle membrane;0.0203366657205999!GO:0042157;lipoprotein metabolic process;0.0203854193364487!GO:0006006;glucose metabolic process;0.0205660022609426!GO:0006518;peptide metabolic process;0.0205660022609426!GO:0016272;prefoldin complex;0.0205753035857717!GO:0000082;G1/S transition of mitotic cell cycle;0.0206017655714744!GO:0032787;monocarboxylic acid metabolic process;0.0210858763615248!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.021227935294031!GO:0030125;clathrin vesicle coat;0.021227935294031!GO:0030665;clathrin coated vesicle membrane;0.021227935294031!GO:0031970;organelle envelope lumen;0.0218340568625508!GO:0006596;polyamine biosynthetic process;0.0224477871558085!GO:0006338;chromatin remodeling;0.0226223504583464!GO:0032200;telomere organization and biogenesis;0.0226223504583464!GO:0000723;telomere maintenance;0.0226223504583464!GO:0051539;4 iron, 4 sulfur cluster binding;0.0226223504583464!GO:0051881;regulation of mitochondrial membrane potential;0.0233777906663002!GO:0008250;oligosaccharyl transferase complex;0.023441975375369!GO:0030132;clathrin coat of coated pit;0.0236975580578534!GO:0005975;carbohydrate metabolic process;0.0237928260603213!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0238051104672596!GO:0009100;glycoprotein metabolic process;0.0239512458727379!GO:0008415;acyltransferase activity;0.0239994458463237!GO:0030518;steroid hormone receptor signaling pathway;0.024007757647314!GO:0006509;membrane protein ectodomain proteolysis;0.0254213017563183!GO:0033619;membrane protein proteolysis;0.0254213017563183!GO:0005784;translocon complex;0.0254213017563183!GO:0008299;isoprenoid biosynthetic process;0.0254676924476625!GO:0031529;ruffle organization and biogenesis;0.0256450783976946!GO:0043601;nuclear replisome;0.0260063555964066!GO:0030894;replisome;0.0260063555964066!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0269966068441674!GO:0051338;regulation of transferase activity;0.0269982831293288!GO:0016301;kinase activity;0.0272026193564746!GO:0032984;macromolecular complex disassembly;0.0272587911965901!GO:0006458;'de novo' protein folding;0.0275535474445408!GO:0051084;'de novo' posttranslational protein folding;0.0275535474445408!GO:0043065;positive regulation of apoptosis;0.0276252892788031!GO:0006672;ceramide metabolic process;0.0276384682672279!GO:0030137;COPI-coated vesicle;0.0284177489455856!GO:0008097;5S rRNA binding;0.0290622895303648!GO:0000922;spindle pole;0.0292723736374486!GO:0004680;casein kinase activity;0.0297891918399836!GO:0050681;androgen receptor binding;0.0299826253304093!GO:0051053;negative regulation of DNA metabolic process;0.0303256963266624!GO:0004003;ATP-dependent DNA helicase activity;0.0307411775396592!GO:0016791;phosphoric monoester hydrolase activity;0.0307411775396592!GO:0007010;cytoskeleton organization and biogenesis;0.0318061239666!GO:0051128;regulation of cellular component organization and biogenesis;0.0328158545921422!GO:0007034;vacuolar transport;0.0331242598796994!GO:0005869;dynactin complex;0.0333272885045791!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.033355425644138!GO:0016407;acetyltransferase activity;0.0334211455024741!GO:0019206;nucleoside kinase activity;0.0341726162311672!GO:0031625;ubiquitin protein ligase binding;0.0342413029887013!GO:0001836;release of cytochrome c from mitochondria;0.0344701589905034!GO:0006979;response to oxidative stress;0.0349534633100464!GO:0000178;exosome (RNase complex);0.0352187260580115!GO:0043068;positive regulation of programmed cell death;0.0358497972998914!GO:0005669;transcription factor TFIID complex;0.0360807630438761!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0361076459676689!GO:0010257;NADH dehydrogenase complex assembly;0.0361076459676689!GO:0033108;mitochondrial respiratory chain complex assembly;0.0361076459676689!GO:0015036;disulfide oxidoreductase activity;0.036388114607764!GO:0006367;transcription initiation from RNA polymerase II promoter;0.036388114607764!GO:0006301;postreplication repair;0.0367419885418129!GO:0006984;ER-nuclear signaling pathway;0.0367895143687085!GO:0043189;H4/H2A histone acetyltransferase complex;0.0374447986496829!GO:0006769;nicotinamide metabolic process;0.0378784417957195!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0388325354975529!GO:0030742;GTP-dependent protein binding;0.0390230072051631!GO:0007004;telomere maintenance via telomerase;0.0390934205596916!GO:0016408;C-acyltransferase activity;0.0396946898560546!GO:0030911;TPR domain binding;0.0399971652289366!GO:0000738;DNA catabolic process, exonucleolytic;0.0404857408804462!GO:0006270;DNA replication initiation;0.0412601535676788!GO:0048146;positive regulation of fibroblast proliferation;0.041447524916495!GO:0050790;regulation of catalytic activity;0.0414846310594965!GO:0032259;methylation;0.0415476394833941!GO:0008180;signalosome;0.0415707815999712!GO:0000819;sister chromatid segregation;0.0425978338402592!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0428743119214932!GO:0006096;glycolysis;0.0434733546508128!GO:0042026;protein refolding;0.043640934513853!GO:0043241;protein complex disassembly;0.0436832078679892!GO:0008426;protein kinase C inhibitor activity;0.0438148234150331!GO:0017134;fibroblast growth factor binding;0.0442513227936536!GO:0016311;dephosphorylation;0.0443817248622453!GO:0000070;mitotic sister chromatid segregation;0.0446185560498401!GO:0022406;membrane docking;0.045047841523606!GO:0048278;vesicle docking;0.045047841523606!GO:0006631;fatty acid metabolic process;0.045047841523606!GO:0008537;proteasome activator complex;0.0450519387279493!GO:0035267;NuA4 histone acetyltransferase complex;0.0450989386791813!GO:0006417;regulation of translation;0.0453179178804011!GO:0043549;regulation of kinase activity;0.0455583150028433!GO:0051085;chaperone cofactor-dependent protein folding;0.0458857264694247!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0460250115678991!GO:0006904;vesicle docking during exocytosis;0.0460870332720888!GO:0005095;GTPase inhibitor activity;0.0466071641886028!GO:0017166;vinculin binding;0.0466716340967133!GO:0004448;isocitrate dehydrogenase activity;0.0466842085117985!GO:0016052;carbohydrate catabolic process;0.0466842085117985!GO:0008017;microtubule binding;0.0466842085117985!GO:0016835;carbon-oxygen lyase activity;0.0470501081111559!GO:0032507;maintenance of cellular protein localization;0.047368651640197!GO:0019362;pyridine nucleotide metabolic process;0.0474544628939862!GO:0000790;nuclear chromatin;0.0474787111686355!GO:0043414;biopolymer methylation;0.0475328718847165!GO:0043154;negative regulation of caspase activity;0.0475328718847165!GO:0031647;regulation of protein stability;0.047834601764648!GO:0030036;actin cytoskeleton organization and biogenesis;0.048105753521771!GO:0000030;mannosyltransferase activity;0.0482540983480548!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0484841672727686!GO:0006081;aldehyde metabolic process;0.049200194221396!GO:0005732;small nucleolar ribonucleoprotein complex;0.0495785193335364!GO:0009116;nucleoside metabolic process;0.0495785193335364!GO:0000726;non-recombinational repair;0.0496237887961014
|sample_id=10483
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=HNF4A_NR2F1,2:3.35518021202;HNF1A:2.83224406331;ZEB1:2.43951935814;SNAI1..3:2.33052860172;ADNP_IRX_SIX_ZHX:2.1580211538;FOX{F1,F2,J1}:2.06941365032;MYOD1:1.84089532293;LMO2:1.52455256578;NR5A1,2:1.39024639023;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.34638116537;VSX1,2:1.27838474329;RBPJ:1.23763180064;HOX{A5,B5}:1.02875623544;HOX{A6,A7,B6,B7}:1.0079022234;E2F1..5:0.974982595284;ZNF148:0.918132025395;FOXQ1:0.914984265607;NFE2L2:0.8611961989;ELK1,4_GABP{A,B1}:0.855029080854;T:0.807156264;STAT5{A,B}:0.794647170038;NKX3-2:0.788536019272;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.755788228552;GATA6:0.70100697363;TFCP2:0.687342328559;bHLH_family:0.669373845718;LEF1_TCF7_TCF7L1,2:0.663790294276;NANOG:0.627366724493;ESR1:0.608308358262;ESRRA:0.592125191407;NFY{A,B,C}:0.545959181841;PAX8:0.506223317502;XCPE1{core}:0.505745735538;RFX2..5_RFXANK_RFXAP:0.500496945622;YY1:0.440649291343;POU2F1..3:0.429846954293;PDX1:0.428686962789;ELF1,2,4:0.423015543231;TBX4,5:0.398563259235;NR6A1:0.395260690499;POU5F1:0.38351535444;MYB:0.381920616335;PITX1..3:0.356537898805;SOX2:0.321039021995;ATF5_CREB3:0.320926649827;CDC5L:0.314582068807;ZNF423:0.31378255987;NFE2:0.286528007286;HES1:0.28296614998;FOX{I1,J2}:0.280895514011;RXRA_VDR{dimer}:0.276522665203;NKX2-3_NKX2-5:0.274278309503;EBF1:0.250723400068;CUX2:0.238848486742;PBX1:0.230873087243;TP53:0.229766758368;FOXN1:0.219112925645;SOX5:0.171679475246;DBP:0.163383120475;FOXA2:0.160805597799;TEAD1:0.153093197282;IRF7:0.137721599542;IKZF1:0.130178364747;LHX3,4:0.1277971827;BACH2:0.124605028361;CDX1,2,4:0.107108181529;FOS_FOS{B,L1}_JUN{B,D}:0.0924345662643;CRX:0.092354281427;FOXL1:0.085656706444;SOX{8,9,10}:0.0503955260214;TLX1..3_NFIC{dimer}:0.0415836996556;FOX{D1,D2}:0.0414223304096;NKX6-1,2:0.0313082564354;FOSL2:0.0244955406995;NFIL3:0.0208069490417;ZBTB16:0.000358094370418;BREu{core}:-0.00703061078785;ATF4:-0.015445923431;GFI1:-0.0191183456143;FOXP1:-0.021574942089;TFDP1:-0.0249934626782;ONECUT1,2:-0.0331080067611;SP1:-0.0361272412881;FOXM1:-0.040670769313;PAX5:-0.0433144180286;BPTF:-0.0523265682797;NRF1:-0.0636146232847;POU6F1:-0.088209824991;MED-1{core}:-0.101237036471;MTF1:-0.11187423737;HIC1:-0.116048284742;FOXD3:-0.140940262846;HAND1,2:-0.166747424595;RORA:-0.185745566451;TBP:-0.204315766604;FOXO1,3,4:-0.214518646813;EP300:-0.216256446723;POU1F1:-0.248725343323;MAZ:-0.250628825891;MEF2{A,B,C,D}:-0.253256649392;AIRE:-0.264680548455;EN1,2:-0.276218062891;NFKB1_REL_RELA:-0.280730496319;ETS1,2:-0.280909682076;ZNF143:-0.290162596636;HLF:-0.316914586289;ARID5B:-0.319329877182;ATF2:-0.325960520894;TFAP2{A,C}:-0.330702877009;ZFP161:-0.344791849113;AR:-0.348102864124;PAX2:-0.352866126571;ALX1:-0.359973630047;SPI1:-0.362643891778;PPARG:-0.370939289045;SOX17:-0.375099143351;TOPORS:-0.380059477402;EGR1..3:-0.387455698272;TEF:-0.403732170751;NR1H4:-0.412092941577;RFX1:-0.414724347293;ALX4:-0.430993036255;PRRX1,2:-0.434694187767;OCT4_SOX2{dimer}:-0.456777203209;NKX2-1,4:-0.477910944266;ATF6:-0.481250181394;HOXA9_MEIS1:-0.48280059426;PAX6:-0.487748923336;DMAP1_NCOR{1,2}_SMARC:-0.492055740949;KLF4:-0.529057698992;IRF1,2:-0.529465140003;TFAP2B:-0.534567894834;EVI1:-0.535583703602;PAX4:-0.559886536637;CEBPA,B_DDIT3:-0.561504659748;RREB1:-0.567778153611;JUN:-0.573378075191;ZBTB6:-0.581067097924;SREBF1,2:-0.583960320672;SPIB:-0.589673735308;FOXP3:-0.592679251432;GLI1..3:-0.598166691284;GFI1B:-0.626741175063;GTF2I:-0.650096393099;HSF1,2:-0.660509887303;HMX1:-0.695940954684;PATZ1:-0.697207770989;NR3C1:-0.719786364343;UFEwm:-0.726392587823;RUNX1..3:-0.744138488042;REST:-0.753290486885;PAX3,7:-0.75575924602;MYFfamily:-0.775625557837;NHLH1,2:-0.785567737157;CREB1:-0.802670980992;ZIC1..3:-0.813464251657;STAT2,4,6:-0.814493513349;TAL1_TCF{3,4,12}:-0.817037057199;AHR_ARNT_ARNT2:-0.819146884572;POU3F1..4:-0.836240608025;XBP1:-0.860552624282;HOX{A4,D4}:-0.895624990432;SPZ1:-0.917170488046;IKZF2:-0.917819602492;STAT1,3:-0.94660727406;MTE{core}:-1.02354250915;NKX2-2,8:-1.02853564258;MYBL2:-1.04335709222;MAFB:-1.05390455292;HMGA1,2:-1.08779097478;TGIF1:-1.09724605002;GTF2A1,2:-1.19316359914;MZF1:-1.21199062931;TFAP4:-1.22893876484;HBP1_HMGB_SSRP1_UBTF:-1.23286906799;SRF:-1.26435069296;ZNF238:-1.28746916534;TLX2:-1.31854709487;NFIX:-1.32772152361;GCM1,2:-1.34626313543;PRDM1:-1.39168064047;GZF1:-1.41990780711;ZNF384:-1.42556930831;HIF1A:-1.44565234037;RXR{A,B,G}:-1.44626438484;NANOG{mouse}:-1.49112136342;NFATC1..3:-1.54704922807;SMAD1..7,9:-1.57241520968;PAX1,9:-1.65035542365;NFE2L1:-1.67718572849;NKX3-1:-1.73843949205;GATA4:-1.89824741523
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10483-107A6;search_select_hide=table117:FF:10483-107A6
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:signet ring carcinoma cell line:NUGC-4
Species:Human (Homo sapiens)
Library ID:CNhs11270
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell lineNUGC-4
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005154
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11270 CAGE DRX008003 DRR008875
Accession ID Hg19

Library idBAMCTSS
CNhs11270 DRZ000300 DRZ001685
Accession ID Hg38

Library idBAMCTSS
CNhs11270 DRZ011650 DRZ013035
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00996
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.439
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0.942
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.173
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0465
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.135
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.05
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.415
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0.05
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00615
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.05
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0475
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.418
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11270

Jaspar motifP-value
MA0002.20.0892
MA0003.10.554
MA0004.10.38
MA0006.10.245
MA0007.10.11
MA0009.10.0124
MA0014.10.189
MA0017.11.54316e-14
MA0018.20.465
MA0019.10.971
MA0024.10.006
MA0025.10.935
MA0027.10.158
MA0028.18.89294e-4
MA0029.10.25
MA0030.10.0264
MA0031.10.0843
MA0035.27.11828e-4
MA0038.10.181
MA0039.20.00575
MA0040.10.0886
MA0041.10.618
MA0042.10.218
MA0043.10.636
MA0046.13.76191e-65
MA0047.24.24887e-7
MA0048.10.777
MA0050.10.407
MA0051.10.455
MA0052.10.492
MA0055.10.05
MA0057.10.642
MA0058.10.286
MA0059.10.0507
MA0060.10.0232
MA0061.10.268
MA0062.22.70212e-4
MA0065.21.3356e-6
MA0066.10.87
MA0067.10.0665
MA0068.10.0443
MA0069.10.693
MA0070.10.366
MA0071.10.775
MA0072.10.584
MA0073.10.939
MA0074.10.572
MA0076.10.0232
MA0077.10.314
MA0078.10.574
MA0079.20.827
MA0080.20.742
MA0081.10.107
MA0083.10.0703
MA0084.10.485
MA0087.10.132
MA0088.10.742
MA0090.10.607
MA0091.10.213
MA0092.10.774
MA0093.10.29
MA0099.20.00122
MA0100.10.938
MA0101.10.109
MA0102.20.796
MA0103.11.94477e-9
MA0104.20.0703
MA0105.10.32
MA0106.10.163
MA0107.10.11
MA0108.20.61
MA0111.10.836
MA0112.27.32419e-4
MA0113.10.23
MA0114.16.86345e-21
MA0115.14.19343e-6
MA0116.10.472
MA0117.10.375
MA0119.10.109
MA0122.10.776
MA0124.10.236
MA0125.10.0128
MA0131.10.752
MA0135.10.521
MA0136.10.596
MA0137.20.219
MA0138.20.487
MA0139.10.0373
MA0140.10.163
MA0141.11.50743e-4
MA0142.10.803
MA0143.10.833
MA0144.10.311
MA0145.10.00774
MA0146.10.0898
MA0147.10.0397
MA0148.15.54391e-8
MA0149.10.156
MA0150.10.138
MA0152.10.461
MA0153.12.45286e-29
MA0154.10.375
MA0155.10.382
MA0156.10.229
MA0157.10.628
MA0159.10.18
MA0160.10.0053
MA0162.10.691
MA0163.10.835
MA0164.10.0761
MA0258.10.0391
MA0259.10.869



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11270

Novel motifP-value
10.136
100.269
1000.46
1010.199
1020.591
1030.73
1040.606
1050.251
1060.31
1070.239
1080.652
1090.00899
110.634
1100.446
1110.915
1120.925
1130.759
1140.823
1150.834
1160.537
1170.0891
1180.294
1190.17
120.518
1200.0922
1210.404
1220.132
1230.548
1240.398
1250.0899
1260.381
1270.529
1280.51
1290.0435
130.00618
1300.943
1310.126
1320.519
1330.0139
1340.0392
1350.0137
1360.00241
1370.0797
1380.931
1390.0906
140.919
1400.907
1410.794
1420.993
1430.0125
1440.315
1450.781
1460.0961
1470.703
1480.157
1490.949
150.152
1500.636
1510.288
1520.279
1530.323
1540.512
1550.209
1560.335
1570.391
1580.905
1590.943
160.146
1600.743
1610.357
1620.652
1630.751
1640.361
1650.994
1660.842
1670.397
1680.856
1690.012
170.372
180.101
190.816
20.732
200.488
210.27
220.596
230.641
240.0717
250.61
260.00379
270.695
280.43
290.154
30.78
300.534
310.767
320.524
330.386
340.549
350.691
360.267
370.539
380.299
390.419
40.445
400.0787
410.151
420.528
430.787
440.473
450.537
460.657
470.279
480.488
490.773
50.636
500.359
510.809
520.532
530.829
540.713
550.825
560.481
570.428
580.523
590.551
60.295
600.362
610.105
620.916
630.131
640.496
650.895
660.138
670.354
680.115
690.116
70.049
700.909
710.293
720.634
730.193
740.945
750.137
760.819
770.0536
782.92064e-5
790.4
80.389
800.467
810.127
820.511
830.424
840.486
850.901
860.857
870.0518
880.843
890.238
90.99
900.885
910.0101
920.48
930.615
940.079
950.0847
960.388
970.713
980.488
990.403



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11270


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3493 (signet ring cell adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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