FF:10499-107C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005715 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007922;DRR008794;DRZ000219;DRZ001604;DRZ011569;DRZ012954 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0104078,FF:0100353,FF:0101120,FF:0100762,FF:0102553,FF:0100018 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10499-107C4 | |id=FF:10499-107C4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100018 | ||
|is_obsolete= | |||
|library_id=CNhs11275 | |||
|library_id_phase_based=2:CNhs11275 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10499 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10499 | |||
|name=lung adenocarcinoma cell line:A549 | |name=lung adenocarcinoma cell line:A549 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11275,LSID759,release008,COMPLETED | |profile_hcage=CNhs11275,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0899568499675355,0,0,0,0,-0.160318030086386,0.0685890998680107,-0.147024581517893,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.084733910480417,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.179913699935071,0,-0.119826925059975,0,0,0,0,0,0,0,0,0.484041205135847,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0342945499340054,0,0,0,0,0,0,0.0685890998680107,0,0,-0.100117506191519,0.0129822247337395,0,0,0,0.127808716688197,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.247438606465559,0,0,0,0,0,0,0.120180621944554,0,0,0,-0.0504586867412895,-0.18838882819645,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=57.2335 | |rna_weight_ug=57.2335 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0098 | |sample_cell_catalog=RCB0098 | ||
|sample_cell_line=A549 | |sample_cell_line=A549 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.76830277685886e-238!GO:0005737;cytoplasm;1.18594158694201e-209!GO:0043226;organelle;1.277398412414e-190!GO:0043229;intracellular organelle;2.95200140020963e-190!GO:0043231;intracellular membrane-bound organelle;5.7367241865587e-184!GO:0043227;membrane-bound organelle;1.08006184489982e-183!GO:0044444;cytoplasmic part;5.16104411386863e-160!GO:0044422;organelle part;8.82860215376004e-148!GO:0044446;intracellular organelle part;4.54999347425305e-146!GO:0032991;macromolecular complex;1.66100388283634e-95!GO:0030529;ribonucleoprotein complex;2.77279063122334e-88!GO:0044237;cellular metabolic process;8.8444258110765e-85!GO:0044238;primary metabolic process;1.76663751041131e-82!GO:0005739;mitochondrion;2.61330035231453e-78!GO:0003723;RNA binding;1.29823780508544e-76!GO:0043233;organelle lumen;1.23909768934117e-73!GO:0031974;membrane-enclosed lumen;1.23909768934117e-73!GO:0043170;macromolecule metabolic process;4.74583354349753e-69!GO:0044428;nuclear part;3.12400846420043e-66!GO:0005515;protein binding;8.94010719557343e-62!GO:0031090;organelle membrane;1.80449746847089e-61!GO:0005634;nucleus;1.71297160251776e-57!GO:0005840;ribosome;1.05938107627133e-54!GO:0006412;translation;5.74536828589038e-53!GO:0019538;protein metabolic process;1.21465085438864e-51!GO:0006396;RNA processing;1.98207078813026e-51!GO:0009058;biosynthetic process;4.15794398472089e-51!GO:0033036;macromolecule localization;1.0493446508992e-48!GO:0016043;cellular component organization and biogenesis;1.0885771710929e-48!GO:0015031;protein transport;1.29738596652948e-48!GO:0044429;mitochondrial part;2.13197331692443e-48!GO:0044260;cellular macromolecule metabolic process;1.57804466133903e-46!GO:0043234;protein complex;2.73681507921878e-46!GO:0044249;cellular biosynthetic process;3.64121508229814e-46!GO:0003735;structural constituent of ribosome;3.64378057912391e-46!GO:0044267;cellular protein metabolic process;3.76404963719099e-46!GO:0008104;protein localization;2.87762614504833e-45!GO:0045184;establishment of protein localization;2.87762614504833e-45!GO:0005829;cytosol;1.12261630707371e-43!GO:0009059;macromolecule biosynthetic process;2.21345539078789e-43!GO:0031981;nuclear lumen;3.06506077128956e-42!GO:0031967;organelle envelope;2.31048488695246e-41!GO:0031975;envelope;3.52664769023148e-41!GO:0033279;ribosomal subunit;1.45862776405259e-39!GO:0016071;mRNA metabolic process;2.28952243893986e-38!GO:0008380;RNA splicing;1.39098265580704e-35!GO:0046907;intracellular transport;3.62710363363837e-35!GO:0043283;biopolymer metabolic process;4.68275434034197e-34!GO:0006397;mRNA processing;5.08502165184301e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.44884946125262e-32!GO:0006996;organelle organization and biogenesis;4.82294820007375e-31!GO:0043228;non-membrane-bound organelle;6.75545120352889e-31!GO:0043232;intracellular non-membrane-bound organelle;6.75545120352889e-31!GO:0065003;macromolecular complex assembly;1.1630472431562e-30!GO:0005740;mitochondrial envelope;4.78694261923753e-30!GO:0006886;intracellular protein transport;3.58115575835394e-29!GO:0010467;gene expression;7.49771193789791e-29!GO:0012505;endomembrane system;3.21255006315402e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.55855367452283e-28!GO:0031966;mitochondrial membrane;9.15898741579519e-28!GO:0019866;organelle inner membrane;9.87484272147745e-28!GO:0000166;nucleotide binding;4.69665225639242e-27!GO:0022607;cellular component assembly;1.67661218379047e-26!GO:0005743;mitochondrial inner membrane;1.99432806114073e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.97561399817844e-26!GO:0051641;cellular localization;3.10207235344559e-25!GO:0051649;establishment of cellular localization;3.44225583553506e-25!GO:0005681;spliceosome;4.7474104881847e-25!GO:0005654;nucleoplasm;1.87808047412623e-24!GO:0005783;endoplasmic reticulum;6.50544879438612e-24!GO:0016874;ligase activity;2.7026059320134e-23!GO:0006457;protein folding;1.22024610361045e-22!GO:0044445;cytosolic part;1.86287292051531e-22!GO:0006119;oxidative phosphorylation;2.01328104674876e-22!GO:0031980;mitochondrial lumen;2.17447692761424e-22!GO:0005759;mitochondrial matrix;2.17447692761424e-22!GO:0006259;DNA metabolic process;2.47852203578273e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.45733590769996e-21!GO:0016462;pyrophosphatase activity;3.56246504627319e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.08284905750746e-21!GO:0015935;small ribosomal subunit;7.0049635248462e-21!GO:0051186;cofactor metabolic process;3.77691409922553e-20!GO:0044455;mitochondrial membrane part;5.63762991495929e-20!GO:0044432;endoplasmic reticulum part;6.2726091818997e-20!GO:0017111;nucleoside-triphosphatase activity;8.47042326783249e-20!GO:0015934;large ribosomal subunit;9.77607104612735e-20!GO:0044451;nucleoplasm part;1.18352357824171e-19!GO:0022618;protein-RNA complex assembly;1.71271513789196e-19!GO:0005730;nucleolus;1.72912035420289e-19!GO:0044265;cellular macromolecule catabolic process;7.86281104498836e-19!GO:0044248;cellular catabolic process;1.59264231862225e-18!GO:0006512;ubiquitin cycle;1.69077112018737e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.27055140707719e-18!GO:0017076;purine nucleotide binding;2.49674438179555e-18!GO:0006511;ubiquitin-dependent protein catabolic process;3.17191295743125e-18!GO:0032553;ribonucleotide binding;3.48493545830848e-18!GO:0032555;purine ribonucleotide binding;3.48493545830848e-18!GO:0019941;modification-dependent protein catabolic process;4.52402749135558e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.52402749135558e-18!GO:0044257;cellular protein catabolic process;5.35777451135744e-18!GO:0005794;Golgi apparatus;1.20030959422003e-17!GO:0007049;cell cycle;1.85191224599274e-17!GO:0043285;biopolymer catabolic process;3.15102409835207e-17!GO:0016192;vesicle-mediated transport;8.1985935315144e-17!GO:0006732;coenzyme metabolic process;8.67626036159287e-17!GO:0048770;pigment granule;2.53725583355447e-16!GO:0042470;melanosome;2.53725583355447e-16!GO:0008135;translation factor activity, nucleic acid binding;3.18563501253291e-16!GO:0005746;mitochondrial respiratory chain;3.55648110811414e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.71455659481543e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.94357442320449e-16!GO:0008134;transcription factor binding;6.01613929374977e-16!GO:0009057;macromolecule catabolic process;6.65475429120349e-16!GO:0005789;endoplasmic reticulum membrane;1.18730168581362e-15!GO:0005761;mitochondrial ribosome;1.74782857360407e-15!GO:0000313;organellar ribosome;1.74782857360407e-15!GO:0043412;biopolymer modification;3.17691138583175e-15!GO:0051082;unfolded protein binding;5.74950561720889e-15!GO:0030163;protein catabolic process;7.36440691604756e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.30220515288342e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.37467037507721e-15!GO:0003954;NADH dehydrogenase activity;9.37467037507721e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.37467037507721e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.49284409128196e-14!GO:0048193;Golgi vesicle transport;1.69257640696303e-14!GO:0003676;nucleic acid binding;1.71991095014537e-14!GO:0032559;adenyl ribonucleotide binding;2.18600527263704e-14!GO:0030554;adenyl nucleotide binding;2.26247370231886e-14!GO:0005524;ATP binding;2.93064924969144e-14!GO:0006974;response to DNA damage stimulus;5.31113390368688e-14!GO:0009055;electron carrier activity;7.04660004385011e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.00737311143642e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.07267323192196e-13!GO:0000375;RNA splicing, via transesterification reactions;1.07267323192196e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.07267323192196e-13!GO:0042254;ribosome biogenesis and assembly;1.68510836212617e-13!GO:0022402;cell cycle process;2.11551089181599e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.54619039998052e-13!GO:0042773;ATP synthesis coupled electron transport;3.54619039998052e-13!GO:0006464;protein modification process;4.30651055737995e-13!GO:0006605;protein targeting;5.95646241677981e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.99426603364355e-13!GO:0003743;translation initiation factor activity;6.25434559502766e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.13586581894115e-13!GO:0045271;respiratory chain complex I;8.13586581894115e-13!GO:0005747;mitochondrial respiratory chain complex I;8.13586581894115e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.8408624963546e-12!GO:0042623;ATPase activity, coupled;2.88336047520942e-12!GO:0006413;translational initiation;3.17875200662154e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.42829433283131e-12!GO:0016491;oxidoreductase activity;3.53636615797376e-12!GO:0016887;ATPase activity;4.02630674960041e-12!GO:0005635;nuclear envelope;4.43439255416881e-12!GO:0051188;cofactor biosynthetic process;1.18920549716833e-11!GO:0006399;tRNA metabolic process;1.27525055483236e-11!GO:0005768;endosome;1.3175403688722e-11!GO:0031965;nuclear membrane;1.539109445232e-11!GO:0008639;small protein conjugating enzyme activity;2.26652102371388e-11!GO:0009056;catabolic process;2.48565328601396e-11!GO:0000278;mitotic cell cycle;2.49081304505321e-11!GO:0005793;ER-Golgi intermediate compartment;2.70591390850354e-11!GO:0016604;nuclear body;4.3875288589719e-11!GO:0006281;DNA repair;4.9252677528851e-11!GO:0004842;ubiquitin-protein ligase activity;5.0276360914064e-11!GO:0006446;regulation of translational initiation;7.03287545945744e-11!GO:0019787;small conjugating protein ligase activity;7.62169679773145e-11!GO:0016881;acid-amino acid ligase activity;1.25374165439356e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.76631701075341e-10!GO:0003712;transcription cofactor activity;2.1735701521374e-10!GO:0043687;post-translational protein modification;2.38464247680709e-10!GO:0044453;nuclear membrane part;2.8609938991016e-10!GO:0006461;protein complex assembly;4.1316267832939e-10!GO:0012501;programmed cell death;5.07788415451229e-10!GO:0009108;coenzyme biosynthetic process;5.09739371103462e-10!GO:0009719;response to endogenous stimulus;5.87311164783082e-10!GO:0006915;apoptosis;9.15165793213926e-10!GO:0009259;ribonucleotide metabolic process;1.68886658281589e-09!GO:0016070;RNA metabolic process;1.8751510650994e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.2250514544929e-09!GO:0008565;protein transporter activity;2.34318656863893e-09!GO:0006163;purine nucleotide metabolic process;2.59813920146098e-09!GO:0044431;Golgi apparatus part;2.70323174796614e-09!GO:0016607;nuclear speck;2.82864731459451e-09!GO:0045333;cellular respiration;2.82864731459451e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.8588767397827e-09!GO:0009060;aerobic respiration;2.88181536051889e-09!GO:0051276;chromosome organization and biogenesis;3.56025989963455e-09!GO:0007005;mitochondrion organization and biogenesis;3.7477402990201e-09!GO:0000087;M phase of mitotic cell cycle;4.28235562040124e-09!GO:0006364;rRNA processing;5.20488683789136e-09!GO:0004386;helicase activity;6.31977748178172e-09!GO:0007067;mitosis;6.36764731761926e-09!GO:0008219;cell death;6.69729512190782e-09!GO:0016265;death;6.69729512190782e-09!GO:0008026;ATP-dependent helicase activity;7.11664999090483e-09!GO:0051301;cell division;7.11664999090483e-09!GO:0016072;rRNA metabolic process;8.19887530696654e-09!GO:0065002;intracellular protein transport across a membrane;9.55799055467979e-09!GO:0006091;generation of precursor metabolites and energy;9.64666444713699e-09!GO:0005643;nuclear pore;1.11924592628003e-08!GO:0006164;purine nucleotide biosynthetic process;1.22783475536975e-08!GO:0006366;transcription from RNA polymerase II promoter;1.2586175506285e-08!GO:0009150;purine ribonucleotide metabolic process;1.41058351673393e-08!GO:0006913;nucleocytoplasmic transport;1.46034190546186e-08!GO:0015986;ATP synthesis coupled proton transport;1.54079350130852e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.54079350130852e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.94720571175654e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.94720571175654e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.94720571175654e-08!GO:0015630;microtubule cytoskeleton;2.03827991528048e-08!GO:0043038;amino acid activation;2.22601727856955e-08!GO:0006418;tRNA aminoacylation for protein translation;2.22601727856955e-08!GO:0043039;tRNA aminoacylation;2.22601727856955e-08!GO:0009260;ribonucleotide biosynthetic process;2.40495013966021e-08!GO:0051169;nuclear transport;2.67162242365669e-08!GO:0030120;vesicle coat;2.7662989877449e-08!GO:0030662;coated vesicle membrane;2.7662989877449e-08!GO:0019829;cation-transporting ATPase activity;3.30817711258495e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.41865734237774e-08!GO:0009117;nucleotide metabolic process;3.49196992618964e-08!GO:0032446;protein modification by small protein conjugation;3.55966526928045e-08!GO:0009141;nucleoside triphosphate metabolic process;4.54843280906912e-08!GO:0006260;DNA replication;4.67944889234516e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.7034497832555e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.90020431670205e-08!GO:0016740;transferase activity;4.90262321313972e-08!GO:0016567;protein ubiquitination;5.09068685348723e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.52915595283697e-08!GO:0051246;regulation of protein metabolic process;6.67212403915017e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.68205728927702e-08!GO:0051726;regulation of cell cycle;7.21872072739436e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.43583678315959e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.43583678315959e-08!GO:0000139;Golgi membrane;7.66924102245583e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.70141454284192e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.70141454284192e-08!GO:0048475;coated membrane;7.9620593969052e-08!GO:0030117;membrane coat;7.9620593969052e-08!GO:0050657;nucleic acid transport;7.9620593969052e-08!GO:0051236;establishment of RNA localization;7.9620593969052e-08!GO:0050658;RNA transport;7.9620593969052e-08!GO:0006403;RNA localization;8.37132064606652e-08!GO:0000074;regulation of progression through cell cycle;8.52440780514792e-08!GO:0006082;organic acid metabolic process;9.80665195787726e-08!GO:0031982;vesicle;1.04210218044474e-07!GO:0005770;late endosome;1.04210218044474e-07!GO:0019752;carboxylic acid metabolic process;1.06565199934655e-07!GO:0046930;pore complex;1.34283910477292e-07!GO:0051187;cofactor catabolic process;1.36248715159962e-07!GO:0006323;DNA packaging;1.37999984912626e-07!GO:0031410;cytoplasmic vesicle;1.386510766555e-07!GO:0044440;endosomal part;1.48123863375197e-07!GO:0010008;endosome membrane;1.48123863375197e-07!GO:0031988;membrane-bound vesicle;1.57061649432139e-07!GO:0046034;ATP metabolic process;1.57061649432139e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.61490645919491e-07!GO:0022403;cell cycle phase;1.61490645919491e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.71976100031296e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.71976100031296e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.71976100031296e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.95762827123478e-07!GO:0005694;chromosome;2.2359113329815e-07!GO:0016787;hydrolase activity;2.29078666517317e-07!GO:0043566;structure-specific DNA binding;2.4416080772898e-07!GO:0006099;tricarboxylic acid cycle;2.65034146602417e-07!GO:0046356;acetyl-CoA catabolic process;2.65034146602417e-07!GO:0006754;ATP biosynthetic process;2.66953803881202e-07!GO:0006753;nucleoside phosphate metabolic process;2.66953803881202e-07!GO:0000245;spliceosome assembly;4.46603253584822e-07!GO:0009109;coenzyme catabolic process;6.08651318503236e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.19774678534634e-07!GO:0006084;acetyl-CoA metabolic process;6.75232530585934e-07!GO:0016779;nucleotidyltransferase activity;9.68693779448937e-07!GO:0003924;GTPase activity;1.34171534714639e-06!GO:0043623;cellular protein complex assembly;1.59598658534864e-06!GO:0005525;GTP binding;1.65281181615523e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.77892695949309e-06!GO:0000279;M phase;1.80809629729378e-06!GO:0006752;group transfer coenzyme metabolic process;1.81464264987248e-06!GO:0017038;protein import;1.8413699344732e-06!GO:0045259;proton-transporting ATP synthase complex;2.30686026156027e-06!GO:0016568;chromatin modification;2.87468268445833e-06!GO:0044427;chromosomal part;3.07738135093198e-06!GO:0051028;mRNA transport;3.15711468234236e-06!GO:0000151;ubiquitin ligase complex;3.21138005472539e-06!GO:0016853;isomerase activity;3.21138005472539e-06!GO:0006613;cotranslational protein targeting to membrane;3.37671667815793e-06!GO:0043067;regulation of programmed cell death;3.44749205288334e-06!GO:0005798;Golgi-associated vesicle;3.53908552539521e-06!GO:0006793;phosphorus metabolic process;3.64825993861579e-06!GO:0006796;phosphate metabolic process;3.64825993861579e-06!GO:0048523;negative regulation of cellular process;4.06271793146751e-06!GO:0005773;vacuole;4.0799085858936e-06!GO:0042981;regulation of apoptosis;4.73785716901587e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.98010099222202e-06!GO:0065004;protein-DNA complex assembly;5.52293736848456e-06!GO:0051427;hormone receptor binding;8.19176220972419e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.27703531587454e-06!GO:0003714;transcription corepressor activity;1.01025578051367e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.10360739485871e-05!GO:0015399;primary active transmembrane transporter activity;1.10360739485871e-05!GO:0045454;cell redox homeostasis;1.11417369599465e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.18896939016754e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.24331437275713e-05!GO:0005667;transcription factor complex;1.3103743163373e-05!GO:0008654;phospholipid biosynthetic process;1.44051453688224e-05!GO:0043069;negative regulation of programmed cell death;1.46986449806143e-05!GO:0005813;centrosome;1.49295306118192e-05!GO:0003713;transcription coactivator activity;1.54411659842802e-05!GO:0035257;nuclear hormone receptor binding;1.78336429694296e-05!GO:0050662;coenzyme binding;1.81591443005282e-05!GO:0005762;mitochondrial large ribosomal subunit;1.81591443005282e-05!GO:0000315;organellar large ribosomal subunit;1.81591443005282e-05!GO:0043021;ribonucleoprotein binding;1.8645404035014e-05!GO:0005788;endoplasmic reticulum lumen;2.14389991556476e-05!GO:0000323;lytic vacuole;2.25470263494258e-05!GO:0005764;lysosome;2.25470263494258e-05!GO:0005815;microtubule organizing center;2.30774903776071e-05!GO:0016563;transcription activator activity;2.54528769711953e-05!GO:0006333;chromatin assembly or disassembly;2.55434230387431e-05!GO:0032561;guanyl ribonucleotide binding;2.89776751026557e-05!GO:0019001;guanyl nucleotide binding;2.89776751026557e-05!GO:0008610;lipid biosynthetic process;3.0260688239305e-05!GO:0000314;organellar small ribosomal subunit;3.02894890307863e-05!GO:0005763;mitochondrial small ribosomal subunit;3.02894890307863e-05!GO:0048519;negative regulation of biological process;3.21396777010846e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.29715721717817e-05!GO:0043066;negative regulation of apoptosis;3.55055028665062e-05!GO:0003724;RNA helicase activity;4.25523845321922e-05!GO:0006916;anti-apoptosis;4.37558613680492e-05!GO:0004298;threonine endopeptidase activity;4.72527190515633e-05!GO:0048471;perinuclear region of cytoplasm;5.384509485893e-05!GO:0045045;secretory pathway;6.28206005922865e-05!GO:0003690;double-stranded DNA binding;6.53807790520998e-05!GO:0003697;single-stranded DNA binding;6.75511820828326e-05!GO:0016859;cis-trans isomerase activity;6.75511820828326e-05!GO:0016310;phosphorylation;6.75511820828326e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.07338907105447e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.59778785490332e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.13625686982024e-05!GO:0016564;transcription repressor activity;8.6076805395421e-05!GO:0003899;DNA-directed RNA polymerase activity;0.000109349797156027!GO:0008033;tRNA processing;0.000127921251107029!GO:0048037;cofactor binding;0.000127921251107029!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000128086225746849!GO:0005769;early endosome;0.00013258352820929!GO:0030133;transport vesicle;0.00013362376927088!GO:0000785;chromatin;0.000135673105469197!GO:0051789;response to protein stimulus;0.000142312254301298!GO:0006986;response to unfolded protein;0.000142312254301298!GO:0031252;leading edge;0.000163320575758113!GO:0009165;nucleotide biosynthetic process;0.000169873185591853!GO:0043492;ATPase activity, coupled to movement of substances;0.000183673869327184!GO:0031324;negative regulation of cellular metabolic process;0.000187303178147825!GO:0019843;rRNA binding;0.000194408712769069!GO:0005819;spindle;0.000194998268996427!GO:0006118;electron transport;0.000204522586629137!GO:0007010;cytoskeleton organization and biogenesis;0.000206358190019133!GO:0030867;rough endoplasmic reticulum membrane;0.000207321428520962!GO:0043681;protein import into mitochondrion;0.00020893527336627!GO:0004576;oligosaccharyl transferase activity;0.000225996137943116!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00022966165057771!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000245238969581667!GO:0045786;negative regulation of progression through cell cycle;0.000246612108267382!GO:0006520;amino acid metabolic process;0.000247475676600333!GO:0009892;negative regulation of metabolic process;0.00026435428999706!GO:0005905;coated pit;0.00028013701548637!GO:0006672;ceramide metabolic process;0.000282988069769863!GO:0051287;NAD binding;0.000315630641781649!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000318827067261661!GO:0035258;steroid hormone receptor binding;0.000326911640790008!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000329975293671017!GO:0051170;nuclear import;0.000331050258638464!GO:0008250;oligosaccharyl transferase complex;0.000344868234380715!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000348338585540748!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000361622398561275!GO:0030658;transport vesicle membrane;0.000370513264709184!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000373627501767687!GO:0005048;signal sequence binding;0.000373627501767687!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000374771821465413!GO:0006626;protein targeting to mitochondrion;0.000386758780325844!GO:0046483;heterocycle metabolic process;0.000386795365653038!GO:0006612;protein targeting to membrane;0.000406964660321201!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.000453950123693604!GO:0051168;nuclear export;0.000467482601198429!GO:0044262;cellular carbohydrate metabolic process;0.000469758433590762!GO:0019899;enzyme binding;0.000474300468980053!GO:0016363;nuclear matrix;0.000502638920383807!GO:0044255;cellular lipid metabolic process;0.000511675278614708!GO:0007006;mitochondrial membrane organization and biogenesis;0.000545606101170915!GO:0016044;membrane organization and biogenesis;0.000546162409104233!GO:0030659;cytoplasmic vesicle membrane;0.000557255531421258!GO:0006839;mitochondrial transport;0.000587694649452829!GO:0006414;translational elongation;0.000622040897221869!GO:0046467;membrane lipid biosynthetic process;0.000646704602503786!GO:0005885;Arp2/3 protein complex;0.000658784616209795!GO:0031072;heat shock protein binding;0.000727391999708648!GO:0030176;integral to endoplasmic reticulum membrane;0.000733858893255758!GO:0005874;microtubule;0.000759900250527444!GO:0030880;RNA polymerase complex;0.000764792570789199!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000764792570789199!GO:0046519;sphingoid metabolic process;0.000773521399644898!GO:0044433;cytoplasmic vesicle part;0.000777908813499787!GO:0006606;protein import into nucleus;0.000850051642476201!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000851359119185353!GO:0051052;regulation of DNA metabolic process;0.000857688927928656!GO:0008361;regulation of cell size;0.000857688927928656!GO:0046474;glycerophospholipid biosynthetic process;0.00087029783663926!GO:0007051;spindle organization and biogenesis;0.000876722510628457!GO:0018196;peptidyl-asparagine modification;0.000892698910453958!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000892698910453958!GO:0046489;phosphoinositide biosynthetic process;0.000897833014885996!GO:0012506;vesicle membrane;0.00094076021634228!GO:0046983;protein dimerization activity;0.000941997635479443!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000972575953599285!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000972575953599285!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000972575953599285!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000972575953599285!GO:0006261;DNA-dependent DNA replication;0.00097509016812885!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000978821707362194!GO:0022890;inorganic cation transmembrane transporter activity;0.000987532754678829!GO:0030660;Golgi-associated vesicle membrane;0.00102489212973095!GO:0007264;small GTPase mediated signal transduction;0.00104386986463631!GO:0006891;intra-Golgi vesicle-mediated transport;0.00107144920797821!GO:0006818;hydrogen transport;0.00111652618008029!GO:0022406;membrane docking;0.00113160751530125!GO:0048278;vesicle docking;0.00113160751530125!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0011659534589387!GO:0048500;signal recognition particle;0.0011991605754996!GO:0044452;nucleolar part;0.0012605744859071!GO:0031902;late endosome membrane;0.00134699624977881!GO:0031968;organelle outer membrane;0.00136068757300902!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00140537112563968!GO:0019867;outer membrane;0.00142502192538086!GO:0006767;water-soluble vitamin metabolic process;0.00149056395497928!GO:0015992;proton transport;0.00151873968982154!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00156181371389954!GO:0000428;DNA-directed RNA polymerase complex;0.00156181371389954!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00156840501146322!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00156840501146322!GO:0016049;cell growth;0.00157034618332196!GO:0065009;regulation of a molecular function;0.00157744822897505!GO:0007017;microtubule-based process;0.00162523653884509!GO:0016126;sterol biosynthetic process;0.00168338734131458!GO:0006402;mRNA catabolic process;0.00174613015876755!GO:0000049;tRNA binding;0.00176627082833138!GO:0003729;mRNA binding;0.00186003283887024!GO:0006904;vesicle docking during exocytosis;0.00189545587787842!GO:0008092;cytoskeletal protein binding;0.00192607014661601!GO:0005791;rough endoplasmic reticulum;0.00195007008924407!GO:0006334;nucleosome assembly;0.00195342703462032!GO:0006383;transcription from RNA polymerase III promoter;0.00204128007349002!GO:0008186;RNA-dependent ATPase activity;0.00208804269464631!GO:0006733;oxidoreduction coenzyme metabolic process;0.00215419208821276!GO:0006650;glycerophospholipid metabolic process;0.00221316325278061!GO:0030118;clathrin coat;0.00223063730667131!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00245716375195453!GO:0006629;lipid metabolic process;0.00246452641704602!GO:0032940;secretion by cell;0.00253037183503428!GO:0005684;U2-dependent spliceosome;0.00260629138911476!GO:0000096;sulfur amino acid metabolic process;0.00267563502895043!GO:0030663;COPI coated vesicle membrane;0.00272158808843035!GO:0030126;COPI vesicle coat;0.00272158808843035!GO:0003684;damaged DNA binding;0.0028338566335487!GO:0006749;glutathione metabolic process;0.00284354010313672!GO:0042802;identical protein binding;0.00286888004904895!GO:0001558;regulation of cell growth;0.0029869169579928!GO:0030134;ER to Golgi transport vesicle;0.00299990653934564!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00305640552215022!GO:0045047;protein targeting to ER;0.00305640552215022!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00305932924551766!GO:0048522;positive regulation of cellular process;0.00309245913471243!GO:0030521;androgen receptor signaling pathway;0.00318265041312763!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00323496420816667!GO:0006769;nicotinamide metabolic process;0.00324599868146944!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324850011111639!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324850011111639!GO:0008312;7S RNA binding;0.00332239875856543!GO:0030127;COPII vesicle coat;0.00333942940135569!GO:0012507;ER to Golgi transport vesicle membrane;0.00333942940135569!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0034455894380643!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00376198176834105!GO:0031497;chromatin assembly;0.00398462418743748!GO:0051540;metal cluster binding;0.00398462418743748!GO:0051536;iron-sulfur cluster binding;0.00398462418743748!GO:0016741;transferase activity, transferring one-carbon groups;0.00401013223468675!GO:0006519;amino acid and derivative metabolic process;0.004036943892847!GO:0006352;transcription initiation;0.00403991929788814!GO:0008022;protein C-terminus binding;0.00413002229140455!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00429036847550395!GO:0005741;mitochondrial outer membrane;0.00438329973643932!GO:0031970;organelle envelope lumen;0.00455346031102155!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00465225904639378!GO:0048487;beta-tubulin binding;0.00465817826853491!GO:0030433;ER-associated protein catabolic process;0.00465817826853491!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00465817826853491!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00467539737224261!GO:0015002;heme-copper terminal oxidase activity;0.00467539737224261!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00467539737224261!GO:0004129;cytochrome-c oxidase activity;0.00467539737224261!GO:0006807;nitrogen compound metabolic process;0.00472056890650329!GO:0006695;cholesterol biosynthetic process;0.00472920476291063!GO:0051087;chaperone binding;0.00480795851253291!GO:0008168;methyltransferase activity;0.00486411315867273!GO:0006302;double-strand break repair;0.00488267908036713!GO:0006950;response to stress;0.00494318093272911!GO:0030137;COPI-coated vesicle;0.00495659898100269!GO:0004004;ATP-dependent RNA helicase activity;0.00515725283958865!GO:0030384;phosphoinositide metabolic process;0.00524860815294228!GO:0005758;mitochondrial intermembrane space;0.00528695393431417!GO:0016197;endosome transport;0.00537831122241715!GO:0006984;ER-nuclear signaling pathway;0.00542817724906996!GO:0030125;clathrin vesicle coat;0.00556971302023838!GO:0030665;clathrin coated vesicle membrane;0.00556971302023838!GO:0008632;apoptotic program;0.00567169724448796!GO:0015631;tubulin binding;0.00575933884006434!GO:0045941;positive regulation of transcription;0.00577709312489903!GO:0043022;ribosome binding;0.00587125562518151!GO:0000776;kinetochore;0.00598236429979763!GO:0006401;RNA catabolic process;0.0059952885677581!GO:0006081;aldehyde metabolic process;0.00618001619928889!GO:0050681;androgen receptor binding;0.00618001619928889!GO:0030132;clathrin coat of coated pit;0.00618001619928889!GO:0030036;actin cytoskeleton organization and biogenesis;0.00634208814612785!GO:0016481;negative regulation of transcription;0.00634888518162183!GO:0006892;post-Golgi vesicle-mediated transport;0.00651819025183321!GO:0007030;Golgi organization and biogenesis;0.00663823057367509!GO:0006611;protein export from nucleus;0.00665569546223401!GO:0006643;membrane lipid metabolic process;0.00667308750454396!GO:0045893;positive regulation of transcription, DNA-dependent;0.00673956442555207!GO:0009116;nucleoside metabolic process;0.00685355180530165!GO:0001726;ruffle;0.00698767931110444!GO:0000059;protein import into nucleus, docking;0.00702443463049743!GO:0006497;protein amino acid lipidation;0.0071325149666148!GO:0006506;GPI anchor biosynthetic process;0.00717911231349831!GO:0006289;nucleotide-excision repair;0.00720765804475018!GO:0016272;prefoldin complex;0.00720765804475018!GO:0009308;amine metabolic process;0.00731199238742694!GO:0009112;nucleobase metabolic process;0.00758311220435187!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00771481016389826!GO:0006417;regulation of translation;0.00781720341664675!GO:0016251;general RNA polymerase II transcription factor activity;0.00787982760952867!GO:0051252;regulation of RNA metabolic process;0.00819033436599845!GO:0043284;biopolymer biosynthetic process;0.00822289279727824!GO:0051329;interphase of mitotic cell cycle;0.00833798388436855!GO:0007052;mitotic spindle organization and biogenesis;0.00836576496984586!GO:0008139;nuclear localization sequence binding;0.0086530380381559!GO:0006740;NADPH regeneration;0.0087594408756361!GO:0006098;pentose-phosphate shunt;0.0087594408756361!GO:0003746;translation elongation factor activity;0.00884317378832181!GO:0051101;regulation of DNA binding;0.00910075539696096!GO:0004674;protein serine/threonine kinase activity;0.00910672895758492!GO:0007243;protein kinase cascade;0.00932909027485463!GO:0006595;polyamine metabolic process;0.00939680206846131!GO:0000287;magnesium ion binding;0.00947759223822462!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00978583268995486!GO:0006505;GPI anchor metabolic process;0.0097996186938361!GO:0007040;lysosome organization and biogenesis;0.0100354330082742!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0100974478767797!GO:0006778;porphyrin metabolic process;0.0108036737737863!GO:0033013;tetrapyrrole metabolic process;0.0108036737737863!GO:0000775;chromosome, pericentric region;0.0110376357036007!GO:0016791;phosphoric monoester hydrolase activity;0.0110876085499468!GO:0043488;regulation of mRNA stability;0.0111905788409284!GO:0043487;regulation of RNA stability;0.0111905788409284!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0116158091053389!GO:0030503;regulation of cell redox homeostasis;0.0118391101477823!GO:0050794;regulation of cellular process;0.0120684904514954!GO:0009303;rRNA transcription;0.0123009621275797!GO:0006066;alcohol metabolic process;0.0123622311117373!GO:0015036;disulfide oxidoreductase activity;0.0127047787836755!GO:0005832;chaperonin-containing T-complex;0.0127047787836755!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0131535830972629!GO:0051128;regulation of cellular component organization and biogenesis;0.013176245109658!GO:0008234;cysteine-type peptidase activity;0.013488632081568!GO:0051325;interphase;0.0135399491860951!GO:0000209;protein polyubiquitination;0.013596960791411!GO:0030119;AP-type membrane coat adaptor complex;0.0137287506431647!GO:0005996;monosaccharide metabolic process;0.0138290017207217!GO:0022415;viral reproductive process;0.0138657587541931!GO:0019362;pyridine nucleotide metabolic process;0.0138736719226202!GO:0016788;hydrolase activity, acting on ester bonds;0.0142644552049154!GO:0006487;protein amino acid N-linked glycosylation;0.0143779254769875!GO:0017166;vinculin binding;0.0146040632502823!GO:0008629;induction of apoptosis by intracellular signals;0.0146497960686332!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0146793338078082!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.014685582377634!GO:0051716;cellular response to stimulus;0.0151113500965741!GO:0005774;vacuolar membrane;0.0156763078338178!GO:0016584;nucleosome positioning;0.0159122403598209!GO:0006284;base-excision repair;0.0159344427745723!GO:0003756;protein disulfide isomerase activity;0.0162841589488454!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0162841589488454!GO:0043624;cellular protein complex disassembly;0.0163285487649832!GO:0042364;water-soluble vitamin biosynthetic process;0.016339244669106!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0167022719519801!GO:0004518;nuclease activity;0.0167989841299752!GO:0019318;hexose metabolic process;0.0168254010440802!GO:0030968;unfolded protein response;0.0171615749120707!GO:0051098;regulation of binding;0.0171615749120707!GO:0009451;RNA modification;0.0172869726758394!GO:0031326;regulation of cellular biosynthetic process;0.0175004834619819!GO:0030140;trans-Golgi network transport vesicle;0.0175004834619819!GO:0042158;lipoprotein biosynthetic process;0.0175543888794498!GO:0006541;glutamine metabolic process;0.0175543888794498!GO:0040008;regulation of growth;0.0183125067819748!GO:0005869;dynactin complex;0.0187629893803051!GO:0003711;transcription elongation regulator activity;0.0188975094245243!GO:0006400;tRNA modification;0.0189040414902333!GO:0009889;regulation of biosynthetic process;0.0190286473035558!GO:0030131;clathrin adaptor complex;0.019056369238564!GO:0006144;purine base metabolic process;0.019108750136658!GO:0008637;apoptotic mitochondrial changes;0.019166360985437!GO:0006739;NADP metabolic process;0.0201092024696194!GO:0008180;signalosome;0.0201422498161546!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0204394450953044!GO:0031124;mRNA 3'-end processing;0.0208531364491454!GO:0003682;chromatin binding;0.0210885374811327!GO:0030027;lamellipodium;0.0211886037580958!GO:0009119;ribonucleoside metabolic process;0.0212651947543122!GO:0000339;RNA cap binding;0.0215640244852498!GO:0006275;regulation of DNA replication;0.0216163461090884!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0222531391249587!GO:0007033;vacuole organization and biogenesis;0.0223196356124273!GO:0043433;negative regulation of transcription factor activity;0.0223243945931069!GO:0005862;muscle thin filament tropomyosin;0.022849003428824!GO:0008017;microtubule binding;0.023003732561696!GO:0003678;DNA helicase activity;0.0232017026898145!GO:0005975;carbohydrate metabolic process;0.023206091626186!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0235960441597599!GO:0016615;malate dehydrogenase activity;0.0246501148053164!GO:0047017;prostaglandin-F synthase activity;0.025787824940004!GO:0030029;actin filament-based process;0.0260476778811708!GO:0032984;macromolecular complex disassembly;0.0265684539287193!GO:0032200;telomere organization and biogenesis;0.0267420468216914!GO:0000723;telomere maintenance;0.0267420468216914!GO:0001666;response to hypoxia;0.0270797992520198!GO:0006378;mRNA polyadenylation;0.0270797992520198!GO:0000086;G2/M transition of mitotic cell cycle;0.0273422906370989!GO:0042168;heme metabolic process;0.0277145110841745!GO:0000075;cell cycle checkpoint;0.0280462355019424!GO:0006376;mRNA splice site selection;0.0280462355019424!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0280462355019424!GO:0008652;amino acid biosynthetic process;0.0282396410110226!GO:0006310;DNA recombination;0.0283065005635799!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0289954714985232!GO:0006405;RNA export from nucleus;0.0290547845143287!GO:0005784;translocon complex;0.0292485644281216!GO:0019783;small conjugating protein-specific protease activity;0.0292493416220776!GO:0001889;liver development;0.0292493416220776!GO:0005669;transcription factor TFIID complex;0.0292493416220776!GO:0004448;isocitrate dehydrogenase activity;0.0292959414757967!GO:0048144;fibroblast proliferation;0.0292959414757967!GO:0048145;regulation of fibroblast proliferation;0.0292959414757967!GO:0051539;4 iron, 4 sulfur cluster binding;0.0293243708363208!GO:0004177;aminopeptidase activity;0.029746466399065!GO:0007034;vacuolar transport;0.0299965139126056!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0303676909003798!GO:0010257;NADH dehydrogenase complex assembly;0.0303676909003798!GO:0033108;mitochondrial respiratory chain complex assembly;0.0303676909003798!GO:0047006;20-alpha-hydroxysteroid dehydrogenase activity;0.0310668543208382!GO:0030518;steroid hormone receptor signaling pathway;0.0315773726081894!GO:0005637;nuclear inner membrane;0.031596469930059!GO:0006007;glucose catabolic process;0.0316685076494394!GO:0004843;ubiquitin-specific protease activity;0.0318794469143749!GO:0030508;thiol-disulfide exchange intermediate activity;0.0318966171212146!GO:0006665;sphingolipid metabolic process;0.0325815374015672!GO:0031301;integral to organelle membrane;0.0326313581084642!GO:0031625;ubiquitin protein ligase binding;0.0326313581084642!GO:0044437;vacuolar part;0.0334119339414707!GO:0006897;endocytosis;0.0336289727919592!GO:0010324;membrane invagination;0.0336289727919592!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0337234211582202!GO:0048146;positive regulation of fibroblast proliferation;0.0342968561621727!GO:0009081;branched chain family amino acid metabolic process;0.0343628248486491!GO:0008287;protein serine/threonine phosphatase complex;0.0346340167992129!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0349047292649744!GO:0006338;chromatin remodeling;0.0355294715805623!GO:0005765;lysosomal membrane;0.0363190584829159!GO:0042769;DNA damage response, detection of DNA damage;0.0363250296526097!GO:0035035;histone acetyltransferase binding;0.0368716782427151!GO:0043130;ubiquitin binding;0.0368716782427151!GO:0032182;small conjugating protein binding;0.0368716782427151!GO:0005875;microtubule associated complex;0.0372631915293027!GO:0016790;thiolester hydrolase activity;0.037436688084533!GO:0006730;one-carbon compound metabolic process;0.0374786209178298!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.037507776045657!GO:0007004;telomere maintenance via telomerase;0.037507776045657!GO:0051920;peroxiredoxin activity;0.0376481526990949!GO:0022884;macromolecule transmembrane transporter activity;0.0378338217094441!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0378338217094441!GO:0046982;protein heterodimerization activity;0.0380581246907879!GO:0005876;spindle microtubule;0.0384034097953363!GO:0004527;exonuclease activity;0.0384494820930972!GO:0016311;dephosphorylation;0.0388045424301582!GO:0016125;sterol metabolic process;0.0397488328833355!GO:0043241;protein complex disassembly;0.0399654888440059!GO:0008320;protein transmembrane transporter activity;0.0399992346471251!GO:0006516;glycoprotein catabolic process;0.0403599784487886!GO:0050811;GABA receptor binding;0.0403599784487886!GO:0006010;glucose 6-phosphate utilization;0.040553434381458!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0407416464237573!GO:0051881;regulation of mitochondrial membrane potential;0.0407566585950154!GO:0031123;RNA 3'-end processing;0.0411260840234461!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0416418207658715!GO:0045039;protein import into mitochondrial inner membrane;0.0416418207658715!GO:0035267;NuA4 histone acetyltransferase complex;0.0416577022199324!GO:0043189;H4/H2A histone acetyltransferase complex;0.0426779023189287!GO:0006779;porphyrin biosynthetic process;0.0434684994623142!GO:0033014;tetrapyrrole biosynthetic process;0.0434684994623142!GO:0009225;nucleotide-sugar metabolic process;0.0439365844148218!GO:0005777;peroxisome;0.0446483517352649!GO:0042579;microbody;0.0446483517352649!GO:0006979;response to oxidative stress;0.0450596022555757!GO:0004221;ubiquitin thiolesterase activity;0.0456052839109222!GO:0004532;exoribonuclease activity;0.0460096254748563!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0460096254748563!GO:0050790;regulation of catalytic activity;0.0462766281393064!GO:0007050;cell cycle arrest;0.0464262982782152!GO:0046128;purine ribonucleoside metabolic process;0.0466458685507218!GO:0042278;purine nucleoside metabolic process;0.0466458685507218!GO:0006108;malate metabolic process;0.0473441922661205!GO:0030145;manganese ion binding;0.0477459448880779!GO:0031406;carboxylic acid binding;0.0490607319629141!GO:0051775;response to redox state;0.0490607319629141!GO:0006980;redox signal response;0.0490607319629141!GO:0008426;protein kinase C inhibitor activity;0.0492626158025353!GO:0008538;proteasome activator activity;0.049454180110615!GO:0042147;retrograde transport, endosome to Golgi;0.0496942526757154 | |||
|sample_id=10499 | |sample_id=10499 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=HNF1A:2.54467952568;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.02543620894;FOXQ1:1.95320475025;bHLH_family:1.7604812135;ADNP_IRX_SIX_ZHX:1.6603650593;ONECUT1,2:1.5150523197;MYOD1:1.39537476652;HNF4A_NR2F1,2:1.38763888423;HIF1A:1.27985755055;ESRRA:1.27006919926;NFE2L2:1.22654795638;FOX{I1,J2}:1.21001422813;PAX8:1.20301127157;ELK1,4_GABP{A,B1}:1.05925812306;FOX{F1,F2,J1}:0.980757242258;LHX3,4:0.978491396086;CEBPA,B_DDIT3:0.952070446645;SREBF1,2:0.882469415218;POU1F1:0.871231110088;NKX3-1:0.867223650413;PITX1..3:0.861978681843;LMO2:0.788809108694;NFE2:0.781868081712;TBX4,5:0.77595903442;TEF:0.714292508418;VSX1,2:0.661913998684;HSF1,2:0.649770293566;STAT5{A,B}:0.638656327208;FOXP1:0.621618943745;NRF1:0.59580943308;ZEB1:0.593561660653;SNAI1..3:0.529423244622;FOXN1:0.496829018287;EN1,2:0.488248409092;FOXD3:0.478306759976;AIRE:0.469738763132;FOXA2:0.469651671392;NANOG:0.457434124108;YY1:0.396323693747;PPARG:0.394427581803;ZNF143:0.373684154662;NFY{A,B,C}:0.373201502448;PAX1,9:0.36619918035;HOX{A5,B5}:0.366195659402;ZBTB16:0.353407181329;NR1H4:0.338305892193;SOX2:0.316536980181;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.314380361821;ATF6:0.306971262096;NFIX:0.292062560964;IKZF1:0.291898881441;CDC5L:0.278605456485;SP1:0.277319514862;CUX2:0.263467842844;ATF4:0.225310697889;RFX1:0.216196030132;EP300:0.209400708135;ALX1:0.199372501794;T:0.194132058585;NKX3-2:0.194110539706;PBX1:0.189788201281;ATF5_CREB3:0.189392062323;FOX{D1,D2}:0.185848435938;NFATC1..3:0.179033932871;PRRX1,2:0.17390479145;TFAP2B:0.163565623047;TEAD1:0.162093308352;ZNF148:0.157630735875;NR5A1,2:0.152637288605;ELF1,2,4:0.139920588407;DBP:0.132569727236;EBF1:0.109734141694;CRX:0.093475076382;BACH2:0.0920982001765;NKX6-1,2:0.089083497747;TP53:0.0766413138237;HLF:0.0600657510439;CREB1:0.0539616529895;PAX5:0.0413882350623;RFX2..5_RFXANK_RFXAP:0.0298350873063;RXRA_VDR{dimer}:0.0295731544365;STAT2,4,6:0.0269111596708;FOS_FOS{B,L1}_JUN{B,D}:0.0251235227095;POU5F1:0.0227795991206;AHR_ARNT_ARNT2:0.00600280189037;ZIC1..3:0.00248093533256;AR:-0.043423028669;TLX1..3_NFIC{dimer}:-0.0596931330432;PAX2:-0.0612660269032;PDX1:-0.065167029188;MYBL2:-0.0657310280501;LEF1_TCF7_TCF7L1,2:-0.0790780567651;PAX4:-0.0848770462393;CDX1,2,4:-0.0875950985505;HOX{A6,A7,B6,B7}:-0.0882457812524;SOX5:-0.0904273788506;HIC1:-0.0934996870634;MYB:-0.107661444829;E2F1..5:-0.128029136112;POU2F1..3:-0.137707698692;MEF2{A,B,C,D}:-0.138033966295;TFAP2{A,C}:-0.155108556496;FOSL2:-0.162348430814;HES1:-0.165022847865;GLI1..3:-0.165196677648;JUN:-0.171978510358;OCT4_SOX2{dimer}:-0.187290658025;EVI1:-0.196450641669;GTF2I:-0.212115735998;GATA6:-0.216357506314;ZFP161:-0.219976230548;XBP1:-0.220291731858;MTF1:-0.223945323789;NR6A1:-0.231512993833;ARID5B:-0.240818233969;XCPE1{core}:-0.247003905001;MED-1{core}:-0.252844871418;BREu{core}:-0.266020792313;TFCP2:-0.277209531251;TAL1_TCF{3,4,12}:-0.283910013448;NKX2-3_NKX2-5:-0.284388282169;GFI1B:-0.284548002093;TOPORS:-0.288627613314;FOXL1:-0.298679342059;MZF1:-0.304036263495;FOXP3:-0.31078974537;NFKB1_REL_RELA:-0.327960493854;HAND1,2:-0.331485239718;HMGA1,2:-0.338001020821;ESR1:-0.342200310684;POU6F1:-0.354753795851;RXR{A,B,G}:-0.35592351157;ZBTB6:-0.372570358894;PATZ1:-0.379077423261;MTE{core}:-0.383922492938;MAZ:-0.411243012062;NHLH1,2:-0.414592163269;ALX4:-0.416536325218;ZNF238:-0.426794435425;SOX17:-0.427383321196;NKX2-1,4:-0.447232371296;IRF7:-0.448185508527;RORA:-0.448415796376;BPTF:-0.463357621592;ATF2:-0.469399996273;EGR1..3:-0.498038596326;TFDP1:-0.519753766096;MAFB:-0.520992773198;TBP:-0.536341819298;REST:-0.548580874714;MYFfamily:-0.552174002361;SPI1:-0.559039986402;SOX{8,9,10}:-0.573048117122;ETS1,2:-0.588514031527;FOXM1:-0.589104947679;RBPJ:-0.615712052952;ZNF423:-0.616176044823;KLF4:-0.625892727556;RREB1:-0.640940288431;DMAP1_NCOR{1,2}_SMARC:-0.652211758493;NKX2-2,8:-0.653812958077;GFI1:-0.660317619669;HOXA9_MEIS1:-0.660802185258;GTF2A1,2:-0.696272909555;NR3C1:-0.69898330127;ZNF384:-0.723508598591;GZF1:-0.724781027649;RUNX1..3:-0.756903980001;NFIL3:-0.770904257;SPIB:-0.816417521081;UFEwm:-0.84996399643;PRDM1:-0.852022357221;SRF:-0.864484217669;HOX{A4,D4}:-0.864750006047;GCM1,2:-0.867844583469;TFAP4:-0.871602124497;IRF1,2:-0.889230913674;HBP1_HMGB_SSRP1_UBTF:-0.892119509928;GATA4:-0.898155976776;PAX6:-0.926453211108;IKZF2:-0.942383613052;TLX2:-1.01473232561;FOXO1,3,4:-1.02153722152;TGIF1:-1.04725888127;POU3F1..4:-1.09597730319;NANOG{mouse}:-1.14823243573;STAT1,3:-1.19115222983;SPZ1:-1.28453470926;NFE2L1:-1.37296139332;PAX3,7:-1.45016357139;SMAD1..7,9:-1.52462973533;HMX1:-1.8170246133 | |top_motifs=HNF1A:2.54467952568;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.02543620894;FOXQ1:1.95320475025;bHLH_family:1.7604812135;ADNP_IRX_SIX_ZHX:1.6603650593;ONECUT1,2:1.5150523197;MYOD1:1.39537476652;HNF4A_NR2F1,2:1.38763888423;HIF1A:1.27985755055;ESRRA:1.27006919926;NFE2L2:1.22654795638;FOX{I1,J2}:1.21001422813;PAX8:1.20301127157;ELK1,4_GABP{A,B1}:1.05925812306;FOX{F1,F2,J1}:0.980757242258;LHX3,4:0.978491396086;CEBPA,B_DDIT3:0.952070446645;SREBF1,2:0.882469415218;POU1F1:0.871231110088;NKX3-1:0.867223650413;PITX1..3:0.861978681843;LMO2:0.788809108694;NFE2:0.781868081712;TBX4,5:0.77595903442;TEF:0.714292508418;VSX1,2:0.661913998684;HSF1,2:0.649770293566;STAT5{A,B}:0.638656327208;FOXP1:0.621618943745;NRF1:0.59580943308;ZEB1:0.593561660653;SNAI1..3:0.529423244622;FOXN1:0.496829018287;EN1,2:0.488248409092;FOXD3:0.478306759976;AIRE:0.469738763132;FOXA2:0.469651671392;NANOG:0.457434124108;YY1:0.396323693747;PPARG:0.394427581803;ZNF143:0.373684154662;NFY{A,B,C}:0.373201502448;PAX1,9:0.36619918035;HOX{A5,B5}:0.366195659402;ZBTB16:0.353407181329;NR1H4:0.338305892193;SOX2:0.316536980181;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.314380361821;ATF6:0.306971262096;NFIX:0.292062560964;IKZF1:0.291898881441;CDC5L:0.278605456485;SP1:0.277319514862;CUX2:0.263467842844;ATF4:0.225310697889;RFX1:0.216196030132;EP300:0.209400708135;ALX1:0.199372501794;T:0.194132058585;NKX3-2:0.194110539706;PBX1:0.189788201281;ATF5_CREB3:0.189392062323;FOX{D1,D2}:0.185848435938;NFATC1..3:0.179033932871;PRRX1,2:0.17390479145;TFAP2B:0.163565623047;TEAD1:0.162093308352;ZNF148:0.157630735875;NR5A1,2:0.152637288605;ELF1,2,4:0.139920588407;DBP:0.132569727236;EBF1:0.109734141694;CRX:0.093475076382;BACH2:0.0920982001765;NKX6-1,2:0.089083497747;TP53:0.0766413138237;HLF:0.0600657510439;CREB1:0.0539616529895;PAX5:0.0413882350623;RFX2..5_RFXANK_RFXAP:0.0298350873063;RXRA_VDR{dimer}:0.0295731544365;STAT2,4,6:0.0269111596708;FOS_FOS{B,L1}_JUN{B,D}:0.0251235227095;POU5F1:0.0227795991206;AHR_ARNT_ARNT2:0.00600280189037;ZIC1..3:0.00248093533256;AR:-0.043423028669;TLX1..3_NFIC{dimer}:-0.0596931330432;PAX2:-0.0612660269032;PDX1:-0.065167029188;MYBL2:-0.0657310280501;LEF1_TCF7_TCF7L1,2:-0.0790780567651;PAX4:-0.0848770462393;CDX1,2,4:-0.0875950985505;HOX{A6,A7,B6,B7}:-0.0882457812524;SOX5:-0.0904273788506;HIC1:-0.0934996870634;MYB:-0.107661444829;E2F1..5:-0.128029136112;POU2F1..3:-0.137707698692;MEF2{A,B,C,D}:-0.138033966295;TFAP2{A,C}:-0.155108556496;FOSL2:-0.162348430814;HES1:-0.165022847865;GLI1..3:-0.165196677648;JUN:-0.171978510358;OCT4_SOX2{dimer}:-0.187290658025;EVI1:-0.196450641669;GTF2I:-0.212115735998;GATA6:-0.216357506314;ZFP161:-0.219976230548;XBP1:-0.220291731858;MTF1:-0.223945323789;NR6A1:-0.231512993833;ARID5B:-0.240818233969;XCPE1{core}:-0.247003905001;MED-1{core}:-0.252844871418;BREu{core}:-0.266020792313;TFCP2:-0.277209531251;TAL1_TCF{3,4,12}:-0.283910013448;NKX2-3_NKX2-5:-0.284388282169;GFI1B:-0.284548002093;TOPORS:-0.288627613314;FOXL1:-0.298679342059;MZF1:-0.304036263495;FOXP3:-0.31078974537;NFKB1_REL_RELA:-0.327960493854;HAND1,2:-0.331485239718;HMGA1,2:-0.338001020821;ESR1:-0.342200310684;POU6F1:-0.354753795851;RXR{A,B,G}:-0.35592351157;ZBTB6:-0.372570358894;PATZ1:-0.379077423261;MTE{core}:-0.383922492938;MAZ:-0.411243012062;NHLH1,2:-0.414592163269;ALX4:-0.416536325218;ZNF238:-0.426794435425;SOX17:-0.427383321196;NKX2-1,4:-0.447232371296;IRF7:-0.448185508527;RORA:-0.448415796376;BPTF:-0.463357621592;ATF2:-0.469399996273;EGR1..3:-0.498038596326;TFDP1:-0.519753766096;MAFB:-0.520992773198;TBP:-0.536341819298;REST:-0.548580874714;MYFfamily:-0.552174002361;SPI1:-0.559039986402;SOX{8,9,10}:-0.573048117122;ETS1,2:-0.588514031527;FOXM1:-0.589104947679;RBPJ:-0.615712052952;ZNF423:-0.616176044823;KLF4:-0.625892727556;RREB1:-0.640940288431;DMAP1_NCOR{1,2}_SMARC:-0.652211758493;NKX2-2,8:-0.653812958077;GFI1:-0.660317619669;HOXA9_MEIS1:-0.660802185258;GTF2A1,2:-0.696272909555;NR3C1:-0.69898330127;ZNF384:-0.723508598591;GZF1:-0.724781027649;RUNX1..3:-0.756903980001;NFIL3:-0.770904257;SPIB:-0.816417521081;UFEwm:-0.84996399643;PRDM1:-0.852022357221;SRF:-0.864484217669;HOX{A4,D4}:-0.864750006047;GCM1,2:-0.867844583469;TFAP4:-0.871602124497;IRF1,2:-0.889230913674;HBP1_HMGB_SSRP1_UBTF:-0.892119509928;GATA4:-0.898155976776;PAX6:-0.926453211108;IKZF2:-0.942383613052;TLX2:-1.01473232561;FOXO1,3,4:-1.02153722152;TGIF1:-1.04725888127;POU3F1..4:-1.09597730319;NANOG{mouse}:-1.14823243573;STAT1,3:-1.19115222983;SPZ1:-1.28453470926;NFE2L1:-1.37296139332;PAX3,7:-1.45016357139;SMAD1..7,9:-1.52462973533;HMX1:-1.8170246133 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10499-107C4;search_select_hide=table117:FF:10499-107C4 | |||
}} | }} | ||
Latest revision as of 14:27, 3 June 2020
| Name: | lung adenocarcinoma cell line:A549 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11275 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11275
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11275
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.874 |
| 10 | 10 | 0.804 |
| 100 | 100 | 0.02 |
| 101 | 101 | 0.214 |
| 102 | 102 | 0.181 |
| 103 | 103 | 0.152 |
| 104 | 104 | 0.785 |
| 105 | 105 | 0.238 |
| 106 | 106 | 0.024 |
| 107 | 107 | 0.18 |
| 108 | 108 | 0.982 |
| 109 | 109 | 0.843 |
| 11 | 11 | 0.569 |
| 110 | 110 | 0.711 |
| 111 | 111 | 0.994 |
| 112 | 112 | 0.168 |
| 113 | 113 | 0.104 |
| 114 | 114 | 0.864 |
| 115 | 115 | 0.927 |
| 116 | 116 | 0.678 |
| 117 | 117 | 0.932 |
| 118 | 118 | 0.917 |
| 119 | 119 | 0.571 |
| 12 | 12 | 0.891 |
| 120 | 120 | 0.294 |
| 121 | 121 | 0.0132 |
| 122 | 122 | 0.709 |
| 123 | 123 | 0.205 |
| 124 | 124 | 0.849 |
| 125 | 125 | 0.18 |
| 126 | 126 | 0.96 |
| 127 | 127 | 0.162 |
| 128 | 128 | 0.00318 |
| 129 | 129 | 0.475 |
| 13 | 13 | 0.298 |
| 130 | 130 | 0.853 |
| 131 | 131 | 0.701 |
| 132 | 132 | 0.436 |
| 133 | 133 | 0.525 |
| 134 | 134 | 0.908 |
| 135 | 135 | 0.325 |
| 136 | 136 | 0.174 |
| 137 | 137 | 0.324 |
| 138 | 138 | 0.584 |
| 139 | 139 | 0.939 |
| 14 | 14 | 0.758 |
| 140 | 140 | 0.732 |
| 141 | 141 | 0.564 |
| 142 | 142 | 0.628 |
| 143 | 143 | 0.0196 |
| 144 | 144 | 0.45 |
| 145 | 145 | 0.0312 |
| 146 | 146 | 0.709 |
| 147 | 147 | 0.825 |
| 148 | 148 | 0.847 |
| 149 | 149 | 0.551 |
| 15 | 15 | 0.748 |
| 150 | 150 | 0.232 |
| 151 | 151 | 0.135 |
| 152 | 152 | 0.803 |
| 153 | 153 | 0.861 |
| 154 | 154 | 0.966 |
| 155 | 155 | 0.356 |
| 156 | 156 | 0.778 |
| 157 | 157 | 0.374 |
| 158 | 158 | 0.0725 |
| 159 | 159 | 0.0712 |
| 16 | 16 | 0.381 |
| 160 | 160 | 0.11 |
| 161 | 161 | 0.33 |
| 162 | 162 | 0.167 |
| 163 | 163 | 0.382 |
| 164 | 164 | 0.405 |
| 165 | 165 | 0.969 |
| 166 | 166 | 0.86 |
| 167 | 167 | 0.957 |
| 168 | 168 | 0.406 |
| 169 | 169 | 0.508 |
| 17 | 17 | 0.338 |
| 18 | 18 | 0.251 |
| 19 | 19 | 0.186 |
| 2 | 2 | 0.455 |
| 20 | 20 | 0.0434 |
| 21 | 21 | 0.893 |
| 22 | 22 | 0.0608 |
| 23 | 23 | 0.105 |
| 24 | 24 | 0.996 |
| 25 | 25 | 0.544 |
| 26 | 26 | 0.404 |
| 27 | 27 | 0.162 |
| 28 | 28 | 0.53 |
| 29 | 29 | 0.972 |
| 3 | 3 | 0.625 |
| 30 | 30 | 0.879 |
| 31 | 31 | 0.417 |
| 32 | 32 | 9.57509e-4 |
| 33 | 33 | 0.761 |
| 34 | 34 | 0.408 |
| 35 | 35 | 0.127 |
| 36 | 36 | 0.664 |
| 37 | 37 | 0.887 |
| 38 | 38 | 0.387 |
| 39 | 39 | 0.807 |
| 4 | 4 | 0.949 |
| 40 | 40 | 0.591 |
| 41 | 41 | 0.0193 |
| 42 | 42 | 0.605 |
| 43 | 43 | 0.0453 |
| 44 | 44 | 0.174 |
| 45 | 45 | 0.866 |
| 46 | 46 | 0.281 |
| 47 | 47 | 0.824 |
| 48 | 48 | 0.814 |
| 49 | 49 | 0.0587 |
| 5 | 5 | 0.643 |
| 50 | 50 | 0.47 |
| 51 | 51 | 0.314 |
| 52 | 52 | 0.594 |
| 53 | 53 | 0.812 |
| 54 | 54 | 0.755 |
| 55 | 55 | 0.761 |
| 56 | 56 | 0.825 |
| 57 | 57 | 0.947 |
| 58 | 58 | 0.598 |
| 59 | 59 | 0.087 |
| 6 | 6 | 0.679 |
| 60 | 60 | 0.233 |
| 61 | 61 | 0.0561 |
| 62 | 62 | 0.0725 |
| 63 | 63 | 0.858 |
| 64 | 64 | 0.523 |
| 65 | 65 | 0.0569 |
| 66 | 66 | 0.454 |
| 67 | 67 | 0.395 |
| 68 | 68 | 0.153 |
| 69 | 69 | 0.725 |
| 7 | 7 | 0.634 |
| 70 | 70 | 0.199 |
| 71 | 71 | 0.513 |
| 72 | 72 | 0.419 |
| 73 | 73 | 0.753 |
| 74 | 74 | 0.356 |
| 75 | 75 | 0.43 |
| 76 | 76 | 0.523 |
| 77 | 77 | 0.922 |
| 78 | 78 | 0.414 |
| 79 | 79 | 0.0692 |
| 8 | 8 | 0.436 |
| 80 | 80 | 0.437 |
| 81 | 81 | 0.475 |
| 82 | 82 | 0.044 |
| 83 | 83 | 0.542 |
| 84 | 84 | 0.407 |
| 85 | 85 | 0.393 |
| 86 | 86 | 0.807 |
| 87 | 87 | 0.034 |
| 88 | 88 | 0.721 |
| 89 | 89 | 0.0543 |
| 9 | 9 | 0.0258 |
| 90 | 90 | 0.474 |
| 91 | 91 | 0.0244 |
| 92 | 92 | 0.205 |
| 93 | 93 | 0.647 |
| 94 | 94 | 0.126 |
| 95 | 95 | 0.59 |
| 96 | 96 | 0.463 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.186 |
| 99 | 99 | 0.16 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11275
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100018 A-549 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0104078 (non-small cell lung adenocarcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0100018 (A-549 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
