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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005476
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000035,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000062,CL:0000375,CL:0000335
|HumanCAGEScanFiles=NCig10064;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.pairs.bed.gz!NCig10128;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007978;DRR008850;DRZ000275;DRZ001660;DRZ011625;DRZ013010
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100385,FF:0100407
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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|expression_enrichment_score=chr12:53730126..53730146,-!p1@SP7!2.22!166.49!SP7;;chr6:45296048..45296082,+!p1@RUNX2!2.21!184.20!RUNX2;;chr12:53730147..53730177,-!p2@SP7!2.11!128.90!SP7;;chr7:96654133..96654150,-!p1@DLX5!1.95!88.32!DLX5;;chr6:45296191..45296203,+!p13@RUNX2!1.93!83.94!RUNX2;;chr8:116673894..116673913,-!p12@TRPS1!1.85!70.22!TRPS1;;chr1:170632477..170632506,+!p6@PRRX1!1.84!68.83!PRRX1;;chr17:48072574..48072597,-!p1@DLX3!1.82!64.85!DLX3;;chr1:170632285..170632309,+!p1@PRRX1!1.77!64.65!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.72!51.12!IRX2;;chr2:200322654..200322707,-!p2@SATB2!1.68!67.63!SATB2;;chr7:19157248..19157268,-!p1@TWIST1!1.65!115.97!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.55!171.27!CREB3L1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.51!31.43!PEG3;;chr17:59477233..59477263,+!p1@TBX2!1.50!92.89!TBX2;;chr2:45236540..45236577,-!p1@SIX2!1.50!30.43!SIX2;;chr6:45296266..45296277,+!p34@RUNX2!1.49!29.84!RUNX2;;chr8:116681409..116681431,-!p2@TRPS1!1.47!76.38!TRPS1;;chr1:170632439..170632465,+!p11@PRRX1!1.45!27.25!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.40!23.87!HOXC5;;chr5:133450365..133450444,+!p1@TCF7!1.39!103.44!TCF7;;chr1:170632959..170632987,+!p4@PRRX1!1.39!25.66!PRRX1;;chr5:88178983..88179012,-!p1@MEF2C!1.38!170.27!MEF2C;;chr8:116680215..116680245,-!p6@TRPS1!1.36!33.82!TRPS1;;chr22:19748231..19748317,+!p1@TBX1!1.36!21.88!TBX1;;chr1:25291475..25291511,-!p2@RUNX3!1.36!21.68!RUNX3;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.24!PRRX1;;chr5:172662197..172662216,-!p1@NKX2-5!1.34!20.89!NKX2-5;;chr15:57511609..57511651,+!p2@TCF12!1.32!33.02!TCF12;;chr20:21494654..21494678,-!p2@NKX2-2!1.32!19.89!NKX2-2;;chr1:119530493..119530572,-!p1@TBX15!1.31!19.49!TBX15;;chr2:119605214..119605230,-!p1@EN1!1.30!18.90!EN1;;chr17:16557128..16557174,-!p1@ZNF624!1.29!83.74!ZNF624;;chr12:53729546..53729565,-!p4@SP7!1.29!18.50!SP7;;chr17:16472486..16472533,-!p1@ZNF287!1.28!87.92!ZNF287;;chr3:157823517..157823562,-!p1@SHOX2!1.24!17.50!SHOX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.24!16.51!ZBED1;;chr8:106330656..106330684,+!p1@ZFPM2!1.23!41.37!ZFPM2;;chr5:3595977..3595999,+!p1@IRX1!1.22!15.52!IRX1;;chr12:53730178..53730189,-!p3@SP7!1.22!15.52!SP7;;chr5:3595934..3595957,+!p2@IRX1!1.20!14.72!IRX1;;chr17:16118835..16118867,-!p1@NCOR1!1.18!460.49!NCOR1;;chr6:35310395..35310410,+!p2@PPARD!1.18!54.30!PPARD;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.07!TBX2;;chr17:59477275..59477286,+!p3@TBX2!1.18!18.90!TBX2;;chr12:85673977..85674015,+!p1@ALX1!1.18!14.12!ALX1;;chr1:170632250..170632277,+!p7@PRRX1!1.18!14.12!PRRX1;;chr11:63684602..63684664,-!p1@RCOR2!1.17!27.25!RCOR2;;chr6:126070769..126070801,+!p1@HEY2!1.17!15.91!HEY2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.73!PRRX2;;chr20:39317868..39317884,-!p1@MAFB!1.11!141.03!MAFB;;chr1:170633262..170633285,+!p3@PRRX1!1.11!13.73!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!1.10!11.54!SALL1;;chr14:24837368..24837401,+!p1@NFATC4!1.09!26.46!NFATC4;;chr12:53729525..53729541,-!p5@SP7!1.08!11.14!SP7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.08!11.14!EN2;;chr20:21494684..21494708,-!p1@NKX2-2!1.08!10.94!NKX2-2;;chr20:21494602..21494622,-!p3@NKX2-2!1.06!10.54!NKX2-2;;chr7:150946015..150946070,-!p3@SMARCD3!1.05!22.08!SMARCD3;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.71!OSR2;;chr7:96635178..96635181,+!p1@DLX6!1.05!10.34!DLX6;;chr1:170632137..170632172,+!p10@PRRX1!1.05!10.34!PRRX1;;chr4:111558135..111558198,-!p2@PITX2!1.05!10.34!PITX2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.05!10.14!ZSCAN1;;chr6:45390002..45390023,+!p6@RUNX2!1.04!17.50!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!1.04!9.95!TBX18;;chr11:44331576..44331650,-!p1@ALX4!1.04!9.95!ALX4;;chr4:111544219..111544240,-!p1@PITX2!1.04!9.95!PITX2;;chr8:116681221..116681236,-!p3@TRPS1!1.02!28.64!TRPS1;;chr7:96634878..96634900,+!p2@DLX6!1.02!9.55!DLX6;;chr5:321810..321877,+!p1@AHRR!1.01!30.24!AHRR;;chr8:145669791..145669834,-!p1@TONSL!1.01!27.25!TONSL;;chr6:45390025..45390076,+!p2@RUNX2!1.01!22.48!RUNX2;;chr6:85474299..85474324,-!p1@TBX18!1.01!16.91!TBX18;;chr17:46688334..46688385,-!p1@HOXB7!1.01!13.53!HOXB7;;chr15:76629123..76629151,+!p1@ISL2!1.00!10.14!ISL2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!8.95!PRRX1;;chr12:53625846..53625861,-!p6@RARG!1.00!8.95!RARG;;chr9:132427972..132428056,+!p1@PRRX2!0.99!11.54!PRRX2;;chr12:54379029..54379057,+!p2@HOXC10!0.99!8.75!HOXC10;;chr20:2673383..2673441,+!p1@EBF4!0.98!13.92!EBF4;;chr1:170632723..170632739,+!p8@PRRX1!0.98!8.55!PRRX1;;chr7:96654026..96654061,-!p2@DLX5!0.98!8.55!DLX5;;chr17:48046642..48046667,+!p3@DLX4!0.97!8.35!DLX4;;chr1:151032860..151032918,+!p1@MLLT11!0.96!99.86!MLLT11;;chr16:73092723..73092738,-!p6@ZFHX3!0.96!10.94!ZFHX3;;chr2:145277640..145277771,-!p1@ZEB2!0.95!108.81!ZEB2;;chr6:35310363..35310382,+!p3@PPARD!0.95!30.63!PPARD;;chrX:131624056..131624069,-!p2@MBNL3!0.95!10.94!MBNL3;;chr6:45390599..45390662,+!p11@RUNX2!0.95!9.55!RUNX2;;chr3:157824001..157824078,-!p2@SHOX2!0.95!7.96!SHOX2;;chr22:19746969..19746987,+!p2@TBX1!0.94!7.76!TBX1;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:104654718..104654741,+!p3@MLL5!0.26!1.59!MLL5;;chr19:57792157..57792170,+!p6@ZNF460!0.26!1.59!ZNF460;;chr3:14988878..14988903,+!p7@NR2C2!0.26!1.39!NR2C2;;chr10:114710083..114710092,+!p8@TCF7L2!0.26!1.39!TCF7L2;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.26!1.19!ZNF775;;chr8:28243785..28243799,-!p6@ZNF395!0.26!1.19!ZNF395;;chr19:39390697..39390713,+!p4@NFKBIB!0.26!0.99!NFKBIB;;chr19:57019098..57019142,+!p3@ZNF471!0.26!0.99!ZNF471;;chrX:70503447..70503517,+!p1@NONO!0.25!130.29!NONO;;chr22:24129138..24129201,+!p1@SMARCB1!0.25!80.56!SMARCB1;;chr19:1652575..1652621,-!p1@TCF3!0.25!62.06!TCF3;;chr6:33168427..33168457,-!p1@RXRB!0.25!35.41!RXRB;;chr10:63661437..63661465,+!p2@ARID5B!0.25!30.43!ARID5B;;chrX:70586140..70586218,+!p1@TAF1!0.25!29.04!TAF1;;chr7:86781734..86781777,+!p1@DMTF1!0.25!28.84!DMTF1;;chr1:114302086..114302174,-!p1@PHTF1!0.25!28.84!PHTF1;;chr19:8579030..8579061,-!p1@ZNF414!0.25!25.46!ZNF414;;chr3:52001448..52001478,-!p2@PCBP4!0.25!21.88!PCBP4;;chr20:50808290..50808328,-!p1@ZFP64!0.25!18.10!ZFP64;;chr19:52531600..52531685,-!p1@ZNF614!0.25!14.32!ZNF614;;chr1:205601093..205601158,-!p1@ELK4!0.25!13.92!ELK4;;chr3:44690211..44690267,+!p1@ZNF35!0.25!13.33!ZNF35;;chr7:64838786..64838809,+!p2@ZNF92!0.25!8.55!ZNF92;;chr11:65687362..65687436,+!p3@DRAP1!0.25!6.56!DRAP1;;chr7:148787768..148787825,-!p1@ZNF786!0.25!4.38!ZNF786;;chr19:18392250..18392260,-!p4@JUND!0.25!4.38!JUND;;chr20:3388207..3388236,-!p4@C20orf194!0.25!3.18!C20orf194;;chr19:35225078..35225120,+!p2@ZNF181!0.25!2.98!ZNF181;;chr7:148959065..148959126,+!p2@ZNF783!0.25!2.78!ZNF783;;chr7:104654690..104654704,+!p2@MLL5!0.25!2.39!MLL5;;chr6:42419649..42419673,-!p3@TRERF1!0.25!1.99!TRERF1;;chr12:6798523..6798548,-!p6@ZNF384!0.25!1.99!ZNF384;;chr6:28303901..28303944,-!p2@ZNF323!0.25!1.79!ZNF323;;chr19:35417844..35417877,+!p2@ZNF30!0.25!1.59!ZNF30;;chr15:42783275..42783286,-!p5@ZFP106!0.25!1.39!ZFP106;;chr6:122720681..122720713,+!p3@HSF2!0.25!1.19!HSF2;;chr8:145535378..145535420,+!p4@HSF1!0.25!1.19!HSF1;;chr3:150126200..150126211,+!p11@TSC22D2!0.25!1.19!TSC22D2;;chr19:19303794..19303805,+!p5@RFXANK!0.25!0.99!RFXANK;;chr15:67459116..67459123,+!p23@SMAD3!0.25!0.80!SMAD3;;chr16:54320302..54320317,-!p10@IRX3!0.25!0.80!IRX3;;chr16:54964690..54964703,+!p4@IRX5!0.25!0.80!IRX5;;chr16:79634464..79634493,-!p5@MAF!0.25!0.80!MAF;;chr17:46675619..46675642,-!p5@HOXB6!0.25!0.80!HOXB6;;chr17:46703528..46703549,-!p5@HOXB9!0.25!0.80!HOXB9;;chr17:46806035..46806059,-!p2@HOXB13!0.25!0.80!HOXB13;;chr18:45663666..45663709,-!p4@ZBTB7C!0.25!0.80!ZBTB7C;;chr19:16435735..16435773,+!p4@KLF2!0.25!0.80!KLF2;;chr2:102091566..102091581,-!p1@RFX8!0.25!0.80!RFX8;;chr2:145277820..145277831,-!p18@ZEB2!0.25!0.80!ZEB2;;chr2:176987463..176987479,+!p2@HOXD9!0.25!0.80!HOXD9;;chr2:200213794..200213807,-!p9@SATB2!0.25!0.80!SATB2;;chr2:45169024..45169033,+!p12@SIX3!0.25!0.80!SIX3;;chr2:63277978..63277995,+!p2@OTX1!0.25!0.80!OTX1;;chr3:12329464..12329472,+!p6@PPARG!0.25!0.80!PPARG;;chr3:157824341..157824356,-!p8@SHOX2!0.25!0.80!SHOX2;;chr3:157824437..157824459,-!p5@SHOX2!0.25!0.80!SHOX2;;chr3:25469815..25469866,+!p3@RARB!0.25!0.80!RARB;;chr4:109087445..109087463,-!p1@LEF1!0.25!0.80!LEF1;;chr4:109087906..109087928,-!p12@LEF1!0.25!0.80!LEF1;;chr4:111543899..111543923,-!p6@PITX2!0.25!0.80!PITX2;;chr4:111558118..111558133,-!p5@PITX2!0.25!0.80!PITX2;;chr4:149363637..149363651,-!p4@NR3C2!0.25!0.80!NR3C2;;chrX:128657363..128657372,-!p3@SMARCA1!0.25!0.80!SMARCA1;;chrX:84498946..84498955,+!p4@ZNF711!0.25!0.80!ZNF711;;
|ffid_belonging_in_development=CL:0000134,CL:0000335
|fonse_cell_line=FF:0100385
|fonse_cell_line=FF:0100385
|fonse_cell_line_closure=FF:0100385
|fonse_cell_line_closure=FF:0100385
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg38.nobarcode.ctss.bed.gz
|id=FF:10558-107I9
|id=FF:10558-107I9
|is_a=EFO:0002091;;FF:0000210;;FF:0100407
|is_a=EFO:0002091;;FF:0000210;;FF:0100407
|is_obsolete=
|is_obsolete=
|library_id=CNhs11290
|library_id_phase_based=2:CNhs11290
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10558
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10558
|name=osteosarcoma cell line:HS-Os-1
|name=osteosarcoma cell line:HS-Os-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 61:
|profile_cagescan=NCig10064,,,
|profile_cagescan=NCig10064,,,
|profile_hcage=CNhs11290,LSID759,release008,COMPLETED
|profile_hcage=CNhs11290,LSID759,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 59: Line 79:
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|sample_cell_line=HS-Os-1
|sample_cell_line=HS-Os-1
Line 80: Line 101:
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|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.93554694351;PRRX1,2:1.8062195104;VSX1,2:1.6637670543;ATF6:1.52995518869;ZNF384:1.47569028968;PAX4:1.39887534126;HOX{A4,D4}:1.33237052097;RBPJ:1.14326977473;NKX2-3_NKX2-5:1.13584250523;MZF1:1.13555029237;NRF1:1.04132990402;PAX3,7:1.02757414629;HIC1:1.02235352737;BREu{core}:1.02062870467;FOXA2:0.991426652081;GLI1..3:0.982243474885;bHLH_family:0.96906858386;ZNF143:0.968208917163;MEF2{A,B,C,D}:0.890267735125;NR6A1:0.857193496582;FOXP1:0.832213200175;ELK1,4_GABP{A,B1}:0.830323699127;NKX6-1,2:0.829349587128;SP1:0.82757420924;ADNP_IRX_SIX_ZHX:0.809011555346;PATZ1:0.792773005065;RREB1:0.756678479002;AHR_ARNT_ARNT2:0.731572757795;MED-1{core}:0.710913505036;EGR1..3:0.708420651526;TFAP2B:0.707987599561;NKX2-1,4:0.706773533902;HBP1_HMGB_SSRP1_UBTF:0.703348021899;PRDM1:0.693134673267;TOPORS:0.68779075494;NFY{A,B,C}:0.685945122605;TFDP1:0.677981357488;LEF1_TCF7_TCF7L1,2:0.663605812412;SOX17:0.647987006204;MAFB:0.632854647707;CDX1,2,4:0.617176532634;LHX3,4:0.611674001693;HMX1:0.594027400922;TLX1..3_NFIC{dimer}:0.584429774993;MYBL2:0.580703427392;E2F1..5:0.560708790449;HES1:0.555241688515;ATF5_CREB3:0.527761467886;ZNF238:0.519995689455;PITX1..3:0.517741467353;GFI1:0.517151500676;YY1:0.507726563181;ZNF423:0.496019420351;EN1,2:0.49522211223;ESR1:0.490334581152;GTF2A1,2:0.489723266433;GCM1,2:0.440182248142;SRF:0.436774813107;SOX{8,9,10}:0.434134432033;ZIC1..3:0.411059152523;ATF4:0.382769392291;TFAP2{A,C}:0.378533732249;GTF2I:0.340018840055;BPTF:0.333889903167;RUNX1..3:0.327849821794;IKZF2:0.325561786783;RFX1:0.318659984951;NKX3-1:0.310075903811;PAX8:0.301588578262;AIRE:0.289578715386;MAZ:0.287017214034;SREBF1,2:0.229730017534;FOX{F1,F2,J1}:0.221671082599;ARID5B:0.21489599857;GFI1B:0.211783510267;SPZ1:0.208614051209;PAX2:0.204386095264;PDX1:0.193815303317;PBX1:0.190233690785;SOX5:0.174987337773;NFATC1..3:0.166234068934;TBX4,5:0.148524673435;KLF4:0.147675322267;TEAD1:0.142388949982;TEF:0.14097305209;XCPE1{core}:0.14097049696;HIF1A:0.132110653698;HOX{A6,A7,B6,B7}:0.130691059153;HAND1,2:0.130018154224;OCT4_SOX2{dimer}:0.126394999975;IKZF1:0.124308521653;NFE2L2:0.118561486912;HNF1A:0.0986411726156;TGIF1:0.0984034032422;CUX2:0.0846623928553;NANOG{mouse}:0.0744075300873;MTE{core}:0.0721846464364;GATA4:0.0630615873875;EVI1:0.0578491590556;RORA:0.0506230811699;REST:0.0478811229549;ZBTB6:0.0476358378786;DMAP1_NCOR{1,2}_SMARC:0.0363392723561;MYFfamily:0.0245547071271;MYB:0.00885822688621;FOX{D1,D2}:0.00310111891389;AR:-0.0328755803085;TBP:-0.0391634990994;MTF1:-0.0564765738205;TP53:-0.0585039129201;XBP1:-0.0618633305295;POU1F1:-0.0685931520504;SMAD1..7,9:-0.0713238508428;ZFP161:-0.0884529798726;STAT1,3:-0.111869563001;NFIX:-0.130829982008;NR5A1,2:-0.134290400945;EBF1:-0.134896662176;PAX5:-0.13717078903;ONECUT1,2:-0.137715776357;CDC5L:-0.140646616531;NR3C1:-0.141371202362;HLF:-0.141394224387;POU3F1..4:-0.158120753427;HOX{A5,B5}:-0.164450436159;POU6F1:-0.189867625639;CREB1:-0.197094654954;POU5F1:-0.199349087664;FOX{I1,J2}:-0.203665898388;FOXM1:-0.20544817551;CRX:-0.212256692905;NR1H4:-0.243731849954;NFIL3:-0.277584842171;PPARG:-0.279647407936;FOSL2:-0.279979091835;JUN:-0.283481120601;DBP:-0.286988624113;ZNF148:-0.298537852789;TFCP2:-0.318981182898;UFEwm:-0.358499266141;SOX2:-0.363721859153;ELF1,2,4:-0.364655808758;ESRRA:-0.369525556251;CEBPA,B_DDIT3:-0.374413562612;SNAI1..3:-0.375545331658;HNF4A_NR2F1,2:-0.382185012074;NHLH1,2:-0.389112466458;RFX2..5_RFXANK_RFXAP:-0.389746142432;IRF7:-0.391703500171;HMGA1,2:-0.391940882072;FOXL1:-0.40013688583;NKX2-2,8:-0.421718166823;SPI1:-0.434824462565;NFE2:-0.488304821486;FOS_FOS{B,L1}_JUN{B,D}:-0.488334006473;FOXD3:-0.496379816909;FOXN1:-0.498570901619;HSF1,2:-0.511718820564;SPIB:-0.512289179343;FOXQ1:-0.524710898739;NANOG:-0.535192727508;BACH2:-0.537575933789;GATA6:-0.542265742289;T:-0.574244104118;RXR{A,B,G}:-0.576802786223;STAT5{A,B}:-0.581776520683;NFKB1_REL_RELA:-0.583698344572;NKX3-2:-0.583922240116;TAL1_TCF{3,4,12}:-0.597721462596;IRF1,2:-0.626398771298;ALX4:-0.628983007016;PAX6:-0.66347604035;PAX1,9:-0.664829061889;TFAP4:-0.676486183868;ATF2:-0.690717008931;FOXP3:-0.740174882273;NFE2L1:-0.788831549163;ZBTB16:-0.788993667379;ZEB1:-0.794176299099;ETS1,2:-0.8162035424;FOXO1,3,4:-0.824648400361;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.896426435893;ALX1:-0.95028705402;LMO2:-0.991058896487;GZF1:-1.02358543023;EP300:-1.02998698234;POU2F1..3:-1.04994789243;STAT2,4,6:-1.06695346357;RXRA_VDR{dimer}:-1.0827888511;HOXA9_MEIS1:-1.28226948195;TLX2:-1.34615685268;MYOD1:-1.73187512838
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10558-107I9;search_select_hide=table117:FF:10558-107I9
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:osteosarcoma cell line:HS-Os-1
Species:Human (Homo sapiens)
Library ID:CNhs11290
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stageNA
sexfemale
age11
cell typeosteoblast
cell lineHS-Os-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005476
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11290 CAGE DRX007978 DRR008850
Accession ID Hg19

Library idBAMCTSS
CNhs11290 DRZ000275 DRZ001660
Accession ID Hg38

Library idBAMCTSS
CNhs11290 DRZ011625 DRZ013010
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10064downloaddownloaddownloaddownload
NCig10128downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0501
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.313
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.414
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0314
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0772
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0788
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD341.084
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.23
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.189
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0788
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.21
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0788
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.254
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.145
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.254
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11290

Jaspar motifP-value
MA0002.20.0959
MA0003.10.125
MA0004.10.197
MA0006.10.285
MA0007.10.201
MA0009.10.56
MA0014.10.991
MA0017.10.00102
MA0018.20.701
MA0019.10.94
MA0024.10.0454
MA0025.10.447
MA0027.10.693
MA0028.10.403
MA0029.10.997
MA0030.10.828
MA0031.10.598
MA0035.20.0252
MA0038.10.0944
MA0039.20.936
MA0040.10.29
MA0041.10.191
MA0042.10.713
MA0043.10.513
MA0046.10.505
MA0047.20.132
MA0048.10.0183
MA0050.19.74736e-5
MA0051.10.0268
MA0052.12.68574e-4
MA0055.10.117
MA0057.10.476
MA0058.10.118
MA0059.10.377
MA0060.12.04507e-5
MA0061.10.00556
MA0062.20.844
MA0065.20.00114
MA0066.10.0584
MA0067.10.945
MA0068.10.00509
MA0069.10.754
MA0070.10.00253
MA0071.10.776
MA0072.10.536
MA0073.10.434
MA0074.10.139
MA0076.10.0815
MA0077.10.622
MA0078.10.537
MA0079.20.739
MA0080.24.43069e-11
MA0081.10.05
MA0083.10.292
MA0084.10.489
MA0087.10.22
MA0088.10.677
MA0090.10.823
MA0091.10.122
MA0092.10.154
MA0093.10.134
MA0099.21.23484e-11
MA0100.10.938
MA0101.10.0548
MA0102.20.117
MA0103.10.00456
MA0104.20.083
MA0105.15.49314e-5
MA0106.10.114
MA0107.10.0147
MA0108.20.00524
MA0111.10.899
MA0112.22.26472e-4
MA0113.10.959
MA0114.10.0255
MA0115.10.0411
MA0116.12.79376e-4
MA0117.10.788
MA0119.10.184
MA0122.10.118
MA0124.10.308
MA0125.10.87
MA0131.10.309
MA0135.10.164
MA0136.11.93411e-7
MA0137.20.268
MA0138.20.0502
MA0139.10.0689
MA0140.10.035
MA0141.10.0449
MA0142.10.0612
MA0143.10.52
MA0144.10.089
MA0145.10.0209
MA0146.10.208
MA0147.10.179
MA0148.10.0814
MA0149.10.182
MA0150.10.00132
MA0152.10.00225
MA0153.10.643
MA0154.10.00256
MA0155.10.455
MA0156.10.00381
MA0157.10.419
MA0159.10.00122
MA0160.10.0831
MA0162.10.0798
MA0163.11.7155e-5
MA0164.10.956
MA0258.10.00366
MA0259.10.413



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11290

Novel motifP-value
10.169
100.0854
1000.851
1010.693
1020.789
1030.00889
1040.302
1050.0625
1060.00355
1070.0828
1080.73
1090.11
110.116
1100.178
1110.43
1120.0636
1130.58
1140.0234
1150.452
1160.521
1170.0646
1180.271
1190.192
120.881
1200.611
1210.813
1220.936
1230.32
1240.404
1250.104
1260.22
1270.19
1280.014
1290.261
130.343
1300.0633
1310.0644
1320.773
1330.693
1340.563
1350.0574
1360.896
1370.144
1380.222
1393.01561e-4
140.357
1400.537
1410.362
1420.834
1430.0755
1440.798
1450.0194
1460.703
1470.955
1480.0116
1490.0488
150.168
1500.436
1510.267
1520.265
1530.145
1540.722
1550.0834
1560.195
1570.75
1580.883
1590.135
160.123
1600.0551
1610.274
1620.811
1630.199
1640.726
1650.385
1660.633
1670.854
1680.545
1690.0188
170.3
180.122
190.248
20.181
200.515
210.824
220.296
230.0444
240.979
250.516
260.118
270.0655
280.976
290.42
30.0713
300.919
310.613
320.351
330.234
340.59
350.205
360.13
370.388
380.379
390.814
40.81
400.196
410.0801
420.215
430.135
440.0141
450.416
460.0498
470.246
480.375
490.232
50.209
500.673
510.534
520.229
530.899
540.348
550.0575
560.342
570.524
580.166
590.0238
60.997
600.086
610.381
620.0717
630.274
640.244
650.074
660.421
670.807
680.832
690.904
70.424
700.128
710.0643
720.159
730.206
740.255
750.126
760.662
770.232
780.562
790.778
80.18
800.851
810.577
820.109
830.242
840.978
850.0111
860.478
870.151
880.904
890.187
90.308
900.506
910.182
920.127
930.756
940.0315
950.307
960.213
970.827
980.522
990.291



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11290


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0100407 (osteosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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