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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005881
|accession_numbers=CAGE;DRX008030;DRR008902;DRZ000327;DRZ001712;DRZ011677;DRZ013062
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.29!235.55!FOXF1;;chr10:28034739..28034756,-!p1@MKX!2.21!162.18!MKX;;chr2:176969228..176969260,+!p1@HOXD11!1.89!77.23!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.86!847.59!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.51!HAND2;;chr9:132427883..132427951,+!p2@PRRX2!1.85!69.51!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.72!131.29!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.51!PRRX1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.34!HOXD11;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.92!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.41!ZBED1;;chr12:115122318..115122331,-!p2@TBX3!1.64!42.48!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.61!102.33!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!1.60!38.61!TCF21;;chr7:27224842..27224872,-!p1@HOXA11!1.60!38.61!HOXA11;;chr14:61116183..61116208,-!p1@SIX1!1.57!131.29!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.55!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.48!NFATC2;;chr2:5832508..5832524,+!p1@SOX11!1.53!32.82!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.53!32.82!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.50!52.13!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!1.50!50.20!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.89!HOXA3;;chr12:66218598..66218645,+!p2@HMGA2!1.49!133.22!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.47!77.23!TWIST1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.75!ZFPM2;;chr12:115122303..115122314,-!p6@TBX3!1.42!25.10!TBX3;;chr4:174450089..174450153,-!p2@HAND2!1.42!25.10!HAND2;;chr4:81118647..81118666,+!p1@PRDM8!1.41!32.82!PRDM8;;chr5:321810..321877,+!p1@AHRR!1.40!75.30!AHRR;;chr5:50679228..50679288,+!p1@ISL1!1.38!23.17!ISL1;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.24!LHX9;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.89!PITX1;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.34!OSR1;;chr9:77112244..77112262,+!p1@RORB!1.26!19.31!RORB;;chr4:174451350..174451363,-!p3@HAND2!1.26!17.38!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.38!PRRX1;;chr10:28034772..28034783,-!p4@MKX!1.26!17.38!MKX;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.38!SALL1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.92!CREB5;;chr8:60031682..60031710,-!p2@TOX!1.25!27.03!TOX;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.13!TWIST2;;chr5:92919452..92919496,+!p11@NR2F1!1.22!15.45!NR2F1;;chr10:131762504..131762555,-!p1@EBF3!1.22!15.45!EBF3;;chr3:18466787..18466839,-!p1@SATB1!1.20!65.64!SATB1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.10!TWIST2;;chr3:169381420..169381535,-!p1@MECOM!1.20!17.38!MECOM;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.37!CREB3L1;;chr8:60031619..60031676,-!p1@TOX!1.19!30.89!TOX;;chr5:137804405..137804444,+!p3@EGR1!1.19!17.38!EGR1;;chr12:115122005..115122016,-!p3@TBX3!1.19!17.38!TBX3;;chr5:137801160..137801176,+!p1@EGR1!1.15!1297.45!EGR1;;chrX:66763815..66763854,+!p2@AR!1.15!17.38!AR;;chr6:45390025..45390076,+!p2@RUNX2!1.14!30.89!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!1.14!30.89!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.24!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!1.13!167.97!ARID5B;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.45!TFAP2A;;chr15:37390850..37390909,-!p3@MEIS2!1.11!23.17!MEIS2;;chr8:67525443..67525459,-!p2@MYBL1!1.10!17.38!MYBL1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.58!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.58!PRRX1;;chr1:164528616..164528660,+!p5@PBX1!1.09!23.17!PBX1;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.67!TBX3;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.24!HMGA2;;chr2:157189180..157189290,-!p1@NR4A2!1.07!55.99!NR4A2;;chr20:42543441..42543497,+!p1@TOX2!1.07!48.27!TOX2;;chr8:22550982..22550999,-!p1@EGR3!1.07!30.89!EGR3;;chrX:66763856..66763896,+!p1@AR!1.07!15.45!AR;;chr8:49833978..49833996,-!p1@SNAI2!1.06!218.17!SNAI2;;chr5:137804484..137804498,+!p2@EGR1!1.06!42.48!EGR1;;chr15:37392616..37392638,-!p2@MEIS2!1.06!32.82!MEIS2;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.82!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.38!FOXQ1;;chr15:96874012..96874042,+!p2@NR2F2!1.05!92.67!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.38!CREB3L1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.45!HMGA2;;chr8:73921136..73921151,+!p2@TERF1!1.05!15.45!TERF1;;chr14:75745523..75745537,+!p1@FOS!1.04!1208.63!FOS;;chr15:37392724..37392757,-!p1@MEIS2!1.04!46.34!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.58!PRRX1;;chr20:50721803..50721857,-!p2@ZFP64!1.03!15.45!ZFP64;;chr19:49864746..49864780,-!p2@TEAD2!1.03!13.52!TEAD2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.65!PITX1;;chr7:27205106..27205134,-!p2@HOXA9!1.03!9.65!HOXA9;;chrX:66764343..66764362,+!p4@AR!1.03!9.65!AR;;chr12:115121770..115121781,-!p4@TBX3!1.03!9.65!TBX3;;chr17:59529743..59529798,+!p1@TBX4!1.03!9.65!TBX4;;chr2:185463521..185463557,+!p3@ZNF804A!1.03!9.65!ZNF804A;;chr8:28243661..28243709,-!p1@ZNF395!1.01!54.06!ZNF395;;chr3:12329358..12329393,+!p3@PPARG!1.01!23.17!PPARG;;chr8:60031762..60031803,-!p3@TOX!1.01!13.52!TOX;;chr3:157823517..157823562,-!p1@SHOX2!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|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.29!235.55!FOXF1;;chr10:28034739..28034756,-!p1@MKX!2.21!162.18!MKX;;chr2:176969228..176969260,+!p1@HOXD11!1.89!77.23!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.86!847.59!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.51!HAND2;;chr9:132427883..132427951,+!p2@PRRX2!1.85!69.51!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.72!131.29!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.51!PRRX1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.34!HOXD11;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.92!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.41!ZBED1;;chr12:115122318..115122331,-!p2@TBX3!1.64!42.48!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.61!102.33!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!1.60!38.61!TCF21;;chr7:27224842..27224872,-!p1@HOXA11!1.60!38.61!HOXA11;;chr14:61116183..61116208,-!p1@SIX1!1.57!131.29!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.55!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.48!NFATC2;;chr2:5832508..5832524,+!p1@SOX11!1.53!32.82!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.53!32.82!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.50!52.13!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!1.50!50.20!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.89!HOXA3;;chr12:66218598..66218645,+!p2@HMGA2!1.49!133.22!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.47!77.23!TWIST1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.75!ZFPM2;;chr12:115122303..115122314,-!p6@TBX3!1.42!25.10!TBX3;;chr4:174450089..174450153,-!p2@HAND2!1.42!25.10!HAND2;;chr4:81118647..81118666,+!p1@PRDM8!1.41!32.82!PRDM8;;chr5:321810..321877,+!p1@AHRR!1.40!75.30!AHRR;;chr5:50679228..50679288,+!p1@ISL1!1.38!23.17!ISL1;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.24!LHX9;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.89!PITX1;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.34!OSR1;;chr9:77112244..77112262,+!p1@RORB!1.26!19.31!RORB;;chr4:174451350..174451363,-!p3@HAND2!1.26!17.38!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.38!PRRX1;;chr10:28034772..28034783,-!p4@MKX!1.26!17.38!MKX;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.38!SALL1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.92!CREB5;;chr8:60031682..60031710,-!p2@TOX!1.25!27.03!TOX;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.13!TWIST2;;chr5:92919452..92919496,+!p11@NR2F1!1.22!15.45!NR2F1;;chr10:131762504..131762555,-!p1@EBF3!1.22!15.45!EBF3;;chr3:18466787..18466839,-!p1@SATB1!1.20!65.64!SATB1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.10!TWIST2;;chr3:169381420..169381535,-!p1@MECOM!1.20!17.38!MECOM;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.37!CREB3L1;;chr8:60031619..60031676,-!p1@TOX!1.19!30.89!TOX;;chr5:137804405..137804444,+!p3@EGR1!1.19!17.38!EGR1;;chr12:115122005..115122016,-!p3@TBX3!1.19!17.38!TBX3;;chr5:137801160..137801176,+!p1@EGR1!1.15!1297.45!EGR1;;chrX:66763815..66763854,+!p2@AR!1.15!17.38!AR;;chr6:45390025..45390076,+!p2@RUNX2!1.14!30.89!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!1.14!30.89!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.24!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!1.13!167.97!ARID5B;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.45!TFAP2A;;chr15:37390850..37390909,-!p3@MEIS2!1.11!23.17!MEIS2;;chr8:67525443..67525459,-!p2@MYBL1!1.10!17.38!MYBL1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.58!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.58!PRRX1;;chr1:164528616..164528660,+!p5@PBX1!1.09!23.17!PBX1;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.67!TBX3;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.24!HMGA2;;chr2:157189180..157189290,-!p1@NR4A2!1.07!55.99!NR4A2;;chr20:42543441..42543497,+!p1@TOX2!1.07!48.27!TOX2;;chr8:22550982..22550999,-!p1@EGR3!1.07!30.89!EGR3;;chrX:66763856..66763896,+!p1@AR!1.07!15.45!AR;;chr8:49833978..49833996,-!p1@SNAI2!1.06!218.17!SNAI2;;chr5:137804484..137804498,+!p2@EGR1!1.06!42.48!EGR1;;chr15:37392616..37392638,-!p2@MEIS2!1.06!32.82!MEIS2;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.82!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.38!FOXQ1;;chr15:96874012..96874042,+!p2@NR2F2!1.05!92.67!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.38!CREB3L1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.45!HMGA2;;chr8:73921136..73921151,+!p2@TERF1!1.05!15.45!TERF1;;chr14:75745523..75745537,+!p1@FOS!1.04!1208.63!FOS;;chr15:37392724..37392757,-!p1@MEIS2!1.04!46.34!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.58!PRRX1;;chr20:50721803..50721857,-!p2@ZFP64!1.03!15.45!ZFP64;;chr19:49864746..49864780,-!p2@TEAD2!1.03!13.52!TEAD2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.65!PITX1;;chr7:27205106..27205134,-!p2@HOXA9!1.03!9.65!HOXA9;;chrX:66764343..66764362,+!p4@AR!1.03!9.65!AR;;chr12:115121770..115121781,-!p4@TBX3!1.03!9.65!TBX3;;chr17:59529743..59529798,+!p1@TBX4!1.03!9.65!TBX4;;chr2:185463521..185463557,+!p3@ZNF804A!1.03!9.65!ZNF804A;;chr8:28243661..28243709,-!p1@ZNF395!1.01!54.06!ZNF395;;chr3:12329358..12329393,+!p3@PPARG!1.01!23.17!PPARG;;chr8:60031762..60031803,-!p3@TOX!1.01!13.52!TOX;;chr3:157823517..157823562,-!p1@SHOX2!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Line 37: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.ctss.bed.gz
|id=FF:10694-109G1
|id=FF:10694-109G1
|is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
|is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs11828
|library_id_phase_based=2:CNhs11828
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10694
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10694
|name=tridermal teratoma cell line:HGRT
|name=tridermal teratoma cell line:HGRT
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11828,LSID829,release010,COMPLETED
|profile_hcage=CNhs11828,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_age=3 months
|sample_age=3 months
|sample_category=cell lines
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|sample_cell_line=HGRT
Line 83: Line 99:
|top_motifs=ADNP_IRX_SIX_ZHX:1.66764756073;VSX1,2:1.3691630062;PATZ1:1.31500794717;CDC5L:1.31060339071;FOXL1:1.30673265246;MYBL2:1.26386585833;POU5F1:1.25577963826;HMGA1,2:1.23977013301;HOXA9_MEIS1:1.22746468598;MZF1:1.18445095705;FOX{F1,F2,J1}:1.12034270516;POU6F1:1.10040800381;GLI1..3:1.08242752088;HIC1:1.08142091005;GFI1:1.07421610245;PRDM1:1.03326545665;TFAP4:1.02278818778;TEAD1:0.984832571086;NKX3-1:0.981452996499;HAND1,2:0.97478716228;POU3F1..4:0.971995734344;PDX1:0.969301031259;SOX17:0.932635751437;HBP1_HMGB_SSRP1_UBTF:0.920468687124;XBP1:0.917330142895;NR6A1:0.914606935549;ZNF423:0.905279171984;ZNF238:0.895357271959;TLX1..3_NFIC{dimer}:0.877773400616;TFAP2B:0.875909306705;GTF2I:0.85831753533;ATF6:0.85255002178;TFAP2{A,C}:0.830249409976;SPZ1:0.827648610586;RREB1:0.813851216749;SRF:0.812650099081;LEF1_TCF7_TCF7L1,2:0.783919990588;RORA:0.769288837953;STAT5{A,B}:0.765345299034;MAZ:0.708353197606;KLF4:0.705758579295;SOX5:0.666467931833;TFDP1:0.657580800337;NFATC1..3:0.649985095613;TBP:0.641427426781;MTE{core}:0.639493650275;LHX3,4:0.629760756268;PITX1..3:0.625037817135;HOX{A6,A7,B6,B7}:0.609229507846;GZF1:0.603383675805;PAX3,7:0.594777567962;TFCP2:0.594039780957;GFI1B:0.591184720424;PAX8:0.553852507561;NR1H4:0.552752465361;FOXA2:0.551038668819;PPARG:0.547946845328;EGR1..3:0.51932328614;HSF1,2:0.515950840921;TAL1_TCF{3,4,12}:0.514998223058;FOX{I1,J2}:0.498592567013;NFIX:0.48063320787;DMAP1_NCOR{1,2}_SMARC:0.475274517397;ZBTB6:0.462532129294;TP53:0.456173958336;HOX{A5,B5}:0.45612625787;MED-1{core}:0.450709451496;FOXD3:0.407542879482;MTF1:0.406150781407;MYFfamily:0.375827607286;FOX{D1,D2}:0.365750845914;HMX1:0.356532323348;TBX4,5:0.355206813518;ZFP161:0.342703445054;ZNF148:0.342353591243;JUN:0.336575135822;EVI1:0.316922038629;FOXP1:0.305017611157;NHLH1,2:0.300439451556;GTF2A1,2:0.298443847551;PAX1,9:0.24887944171;SOX2:0.245121249685;ZBTB16:0.195593217908;FOXP3:0.194844078024;EN1,2:0.194149712488;BREu{core}:0.182047020199;AHR_ARNT_ARNT2:0.181317097583;HNF1A:0.176736815545;NFE2:0.175570077974;MYB:0.166394679404;POU2F1..3:0.166326582494;HLF:0.164414828131;DBP:0.163830717181;BACH2:0.149816469045;MEF2{A,B,C,D}:0.145800572791;NKX2-3_NKX2-5:0.14564026207;HOX{A4,D4}:0.144505871857;AR:0.136142761977;BPTF:0.12559368701;NANOG:0.117191297808;PAX4:0.111234828847;RUNX1..3:0.101217780056;ONECUT1,2:0.0996854913085;NANOG{mouse}:0.0858733387464;E2F1..5:0.0850161469425;HES1:0.0732299250071;FOSL2:0.0332918349459;RBPJ:0.0325911668113;PRRX1,2:0.0259608680752;STAT2,4,6:0.0254775600927;CDX1,2,4:0.0184973758017;NKX2-1,4:0.0176076498323;FOS_FOS{B,L1}_JUN{B,D}:0.0102213711083;TOPORS:0.00120053365595;NFE2L2:-0.00342755512939;RFX1:-0.0131072433781;ESR1:-0.0206060053989;CUX2:-0.0286991632226;OCT4_SOX2{dimer}:-0.0396956904781;AIRE:-0.0444261409457;PBX1:-0.0496078926973;GATA6:-0.0537075322433;SP1:-0.0566802542204;NKX6-1,2:-0.0724796541081;SMAD1..7,9:-0.0846445230638;REST:-0.0867908503894;FOXO1,3,4:-0.091095279536;CEBPA,B_DDIT3:-0.127694449607;MAFB:-0.131797115251;IKZF2:-0.138281216291;T:-0.140288102513;ESRRA:-0.154251026913;HNF4A_NR2F1,2:-0.167497832096;ATF5_CREB3:-0.183688241155;XCPE1{core}:-0.187808588236;PAX6:-0.192212038319;NKX2-2,8:-0.194789545223;RFX2..5_RFXANK_RFXAP:-0.20115016979;TGIF1:-0.212737779792;RXR{A,B,G}:-0.227807692994;UFEwm:-0.24349587203;TLX2:-0.264737950893;NFKB1_REL_RELA:-0.283912039593;SOX{8,9,10}:-0.285911228713;ZNF384:-0.293483974943;IRF1,2:-0.31771538091;POU1F1:-0.34122897888;ZNF143:-0.345421000422;FOXQ1:-0.351512086664;NR3C1:-0.354362890546;GCM1,2:-0.408547741827;NKX3-2:-0.411269118625;CRX:-0.425550223581;ATF2:-0.450545939255;NFIL3:-0.456917689425;GATA4:-0.474658906906;IRF7:-0.478729406977;LMO2:-0.489801406401;ETS1,2:-0.494679088895;FOXM1:-0.500003456535;PAX2:-0.518512799728;EBF1:-0.539843369715;IKZF1:-0.564027026559;FOXN1:-0.575900134837;EP300:-0.580409605811;SPI1:-0.620655893883;ZIC1..3:-0.64271443865;YY1:-0.653861315994;SPIB:-0.706445772449;NRF1:-0.708609982092;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730128811245;NFY{A,B,C}:-0.755022813912;PAX5:-0.755705367371;ATF4:-0.781585366112;ZEB1:-0.803760987843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.80771144772;NR5A1,2:-0.827858302057;ALX4:-0.874003456583;SREBF1,2:-0.894919442655;CREB1:-0.900669402202;SNAI1..3:-0.906639442399;TEF:-0.912246686708;ELK1,4_GABP{A,B1}:-0.933594940493;ARID5B:-1.01051829105;RXRA_VDR{dimer}:-1.03158758278;MYOD1:-1.10577666337;NFE2L1:-1.15808397558;HIF1A:-1.16388873958;ALX1:-1.28954466948;bHLH_family:-1.29456355262;ELF1,2,4:-1.30997419915;STAT1,3:-1.3464459728
|top_motifs=ADNP_IRX_SIX_ZHX:1.66764756073;VSX1,2:1.3691630062;PATZ1:1.31500794717;CDC5L:1.31060339071;FOXL1:1.30673265246;MYBL2:1.26386585833;POU5F1:1.25577963826;HMGA1,2:1.23977013301;HOXA9_MEIS1:1.22746468598;MZF1:1.18445095705;FOX{F1,F2,J1}:1.12034270516;POU6F1:1.10040800381;GLI1..3:1.08242752088;HIC1:1.08142091005;GFI1:1.07421610245;PRDM1:1.03326545665;TFAP4:1.02278818778;TEAD1:0.984832571086;NKX3-1:0.981452996499;HAND1,2:0.97478716228;POU3F1..4:0.971995734344;PDX1:0.969301031259;SOX17:0.932635751437;HBP1_HMGB_SSRP1_UBTF:0.920468687124;XBP1:0.917330142895;NR6A1:0.914606935549;ZNF423:0.905279171984;ZNF238:0.895357271959;TLX1..3_NFIC{dimer}:0.877773400616;TFAP2B:0.875909306705;GTF2I:0.85831753533;ATF6:0.85255002178;TFAP2{A,C}:0.830249409976;SPZ1:0.827648610586;RREB1:0.813851216749;SRF:0.812650099081;LEF1_TCF7_TCF7L1,2:0.783919990588;RORA:0.769288837953;STAT5{A,B}:0.765345299034;MAZ:0.708353197606;KLF4:0.705758579295;SOX5:0.666467931833;TFDP1:0.657580800337;NFATC1..3:0.649985095613;TBP:0.641427426781;MTE{core}:0.639493650275;LHX3,4:0.629760756268;PITX1..3:0.625037817135;HOX{A6,A7,B6,B7}:0.609229507846;GZF1:0.603383675805;PAX3,7:0.594777567962;TFCP2:0.594039780957;GFI1B:0.591184720424;PAX8:0.553852507561;NR1H4:0.552752465361;FOXA2:0.551038668819;PPARG:0.547946845328;EGR1..3:0.51932328614;HSF1,2:0.515950840921;TAL1_TCF{3,4,12}:0.514998223058;FOX{I1,J2}:0.498592567013;NFIX:0.48063320787;DMAP1_NCOR{1,2}_SMARC:0.475274517397;ZBTB6:0.462532129294;TP53:0.456173958336;HOX{A5,B5}:0.45612625787;MED-1{core}:0.450709451496;FOXD3:0.407542879482;MTF1:0.406150781407;MYFfamily:0.375827607286;FOX{D1,D2}:0.365750845914;HMX1:0.356532323348;TBX4,5:0.355206813518;ZFP161:0.342703445054;ZNF148:0.342353591243;JUN:0.336575135822;EVI1:0.316922038629;FOXP1:0.305017611157;NHLH1,2:0.300439451556;GTF2A1,2:0.298443847551;PAX1,9:0.24887944171;SOX2:0.245121249685;ZBTB16:0.195593217908;FOXP3:0.194844078024;EN1,2:0.194149712488;BREu{core}:0.182047020199;AHR_ARNT_ARNT2:0.181317097583;HNF1A:0.176736815545;NFE2:0.175570077974;MYB:0.166394679404;POU2F1..3:0.166326582494;HLF:0.164414828131;DBP:0.163830717181;BACH2:0.149816469045;MEF2{A,B,C,D}:0.145800572791;NKX2-3_NKX2-5:0.14564026207;HOX{A4,D4}:0.144505871857;AR:0.136142761977;BPTF:0.12559368701;NANOG:0.117191297808;PAX4:0.111234828847;RUNX1..3:0.101217780056;ONECUT1,2:0.0996854913085;NANOG{mouse}:0.0858733387464;E2F1..5:0.0850161469425;HES1:0.0732299250071;FOSL2:0.0332918349459;RBPJ:0.0325911668113;PRRX1,2:0.0259608680752;STAT2,4,6:0.0254775600927;CDX1,2,4:0.0184973758017;NKX2-1,4:0.0176076498323;FOS_FOS{B,L1}_JUN{B,D}:0.0102213711083;TOPORS:0.00120053365595;NFE2L2:-0.00342755512939;RFX1:-0.0131072433781;ESR1:-0.0206060053989;CUX2:-0.0286991632226;OCT4_SOX2{dimer}:-0.0396956904781;AIRE:-0.0444261409457;PBX1:-0.0496078926973;GATA6:-0.0537075322433;SP1:-0.0566802542204;NKX6-1,2:-0.0724796541081;SMAD1..7,9:-0.0846445230638;REST:-0.0867908503894;FOXO1,3,4:-0.091095279536;CEBPA,B_DDIT3:-0.127694449607;MAFB:-0.131797115251;IKZF2:-0.138281216291;T:-0.140288102513;ESRRA:-0.154251026913;HNF4A_NR2F1,2:-0.167497832096;ATF5_CREB3:-0.183688241155;XCPE1{core}:-0.187808588236;PAX6:-0.192212038319;NKX2-2,8:-0.194789545223;RFX2..5_RFXANK_RFXAP:-0.20115016979;TGIF1:-0.212737779792;RXR{A,B,G}:-0.227807692994;UFEwm:-0.24349587203;TLX2:-0.264737950893;NFKB1_REL_RELA:-0.283912039593;SOX{8,9,10}:-0.285911228713;ZNF384:-0.293483974943;IRF1,2:-0.31771538091;POU1F1:-0.34122897888;ZNF143:-0.345421000422;FOXQ1:-0.351512086664;NR3C1:-0.354362890546;GCM1,2:-0.408547741827;NKX3-2:-0.411269118625;CRX:-0.425550223581;ATF2:-0.450545939255;NFIL3:-0.456917689425;GATA4:-0.474658906906;IRF7:-0.478729406977;LMO2:-0.489801406401;ETS1,2:-0.494679088895;FOXM1:-0.500003456535;PAX2:-0.518512799728;EBF1:-0.539843369715;IKZF1:-0.564027026559;FOXN1:-0.575900134837;EP300:-0.580409605811;SPI1:-0.620655893883;ZIC1..3:-0.64271443865;YY1:-0.653861315994;SPIB:-0.706445772449;NRF1:-0.708609982092;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730128811245;NFY{A,B,C}:-0.755022813912;PAX5:-0.755705367371;ATF4:-0.781585366112;ZEB1:-0.803760987843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.80771144772;NR5A1,2:-0.827858302057;ALX4:-0.874003456583;SREBF1,2:-0.894919442655;CREB1:-0.900669402202;SNAI1..3:-0.906639442399;TEF:-0.912246686708;ELK1,4_GABP{A,B1}:-0.933594940493;ARID5B:-1.01051829105;RXRA_VDR{dimer}:-1.03158758278;MYOD1:-1.10577666337;NFE2L1:-1.15808397558;HIF1A:-1.16388873958;ALX1:-1.28954466948;bHLH_family:-1.29456355262;ELF1,2,4:-1.30997419915;STAT1,3:-1.3464459728
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10694-109G1;search_select_hide=table117:FF:10694-109G1
}}
}}

Latest revision as of 14:33, 3 June 2020

Name:tridermal teratoma cell line:HGRT
Species:Human (Homo sapiens)
Library ID:CNhs11828
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexfemale
age3 months
cell typeunclassifiable
cell lineHGRT
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005881
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11828 CAGE DRX008030 DRR008902
Accession ID Hg19

Library idBAMCTSS
CNhs11828 DRZ000327 DRZ001712
Accession ID Hg38

Library idBAMCTSS
CNhs11828 DRZ011677 DRZ013062
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0481
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.412
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0896
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00569
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.467
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.203
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.227
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11828

Jaspar motifP-value
MA0002.20.586
MA0003.10.332
MA0004.10.333
MA0006.10.416
MA0007.10.185
MA0009.10.502
MA0014.10.0249
MA0017.10.239
MA0018.20.00778
MA0019.10.308
MA0024.10.727
MA0025.10.192
MA0027.10.561
MA0028.18.16265e-11
MA0029.10.334
MA0030.10.277
MA0031.10.545
MA0035.20.511
MA0038.10.58
MA0039.20.00223
MA0040.10.714
MA0041.10.152
MA0042.10.0597
MA0043.10.00425
MA0046.10.0109
MA0047.20.33
MA0048.10.55
MA0050.15.30264e-5
MA0051.10.00352
MA0052.10.817
MA0055.10.313
MA0057.10.327
MA0058.10.0515
MA0059.10.0697
MA0060.10.052
MA0061.10.466
MA0062.22.33291e-18
MA0065.20.0627
MA0066.10.857
MA0067.10.091
MA0068.16.41662e-4
MA0069.10.378
MA0070.10.633
MA0071.10.838
MA0072.10.359
MA0073.10.419
MA0074.10.596
MA0076.12.02932e-11
MA0077.10.725
MA0078.10.0309
MA0079.20.418
MA0080.23.41199e-7
MA0081.10.00191
MA0083.10.00107
MA0084.10.018
MA0087.10.426
MA0088.10.0506
MA0090.16.34769e-5
MA0091.10.169
MA0092.10.236
MA0093.10.277
MA0099.20.202
MA0100.10.788
MA0101.10.385
MA0102.20.713
MA0103.10.00847
MA0104.20.0055
MA0105.10.261
MA0106.10.937
MA0107.10.634
MA0108.20.00603
MA0111.10.508
MA0112.20.139
MA0113.10.706
MA0114.10.052
MA0115.10.147
MA0116.10.0642
MA0117.10.437
MA0119.10.0314
MA0122.10.944
MA0124.10.651
MA0125.10.881
MA0131.10.0608
MA0135.10.328
MA0136.12.44345e-9
MA0137.20.298
MA0138.20.969
MA0139.10.00463
MA0140.10.798
MA0141.10.503
MA0142.10.0747
MA0143.10.231
MA0144.10.854
MA0145.10.731
MA0146.10.61
MA0147.10.0142
MA0148.10.315
MA0149.10.733
MA0150.10.69
MA0152.10.0107
MA0153.10.575
MA0154.10.132
MA0155.10.806
MA0156.15.48846e-9
MA0157.10.595
MA0159.10.222
MA0160.10.634
MA0162.10.807
MA0163.10.0346
MA0164.10.281
MA0258.10.282
MA0259.10.103



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11828

Novel motifP-value
10.756
100.0685
1000.294
1010.685
1020.0298
1030.939
1040.499
1050.104
1060.277
1070.009
1080.5
1090.14
110.864
1100.696
1110.665
1120.0411
1130.485
1140.45
1150.618
1160.761
1170.0182
1180.19
1190.238
120.0473
1200.0576
1210.00773
1220.188
1230.705
1240.0367
1250.456
1260.93
1270.191
1280.0121
1290.307
130.0133
1300.381
1310.299
1320.523
1330.474
1340.401
1350.543
1360.0346
1370.173
1380.745
1390.815
140.717
1400.726
1410.121
1420.872
1430.633
1440.87
1450.819
1460.513
1470.0993
1480.14
1490.906
150.8
1500.596
1510.951
1520.912
1530.629
1540.744
1550.726
1560.453
1570.173
1580.809
1590.884
160.7
1600.696
1610.317
1620.0421
1630.423
1640.0904
1650.582
1660.129
1670.685
1680.841
1690.757
170.0492
180.193
190.515
20.434
200.272
210.559
220.382
230.00504
240.927
250.0593
260.537
270.993
280.471
290.00124
30.738
300.169
310.619
327.08089e-4
330.103
340.31
350.452
360.193
370.198
380.612
390.764
40.563
400.0508
410.653
420.845
430.885
440.0845
450.337
460.668
470.141
480.175
490.398
50.51
500.39
510.278
520.0697
530.979
540.232
550.14
560.422
570.462
580.575
590.394
60.345
600.597
610.511
620.889
630.517
640.826
650.223
660.848
670.915
680.584
690.665
70.078
700.719
710.0582
720.596
730.0981
740.166
750.0101
760.222
770.662
780.137
790.848
80.768
800.846
810.615
820.517
830.961
840.97
850.79
860.59
870.0212
880.143
890.406
90.142
900.398
910.837
920.134
930.822
940.0381
950.00464
960.307
970.166
980.465
990.0188



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11828


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
3307 (teratoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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