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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007889
|DRA_sample_Accession=CAGE@SAMD00005407
|accession_numbers=CAGE;DRX007995;DRR008867;DRZ000292;DRZ001677;DRZ011642;DRZ013027
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.50!314.27!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.30!241.32!FOXF1;;chr12:52445218..52445237,+!p1@NR4A1!1.94!1028.60!NR4A1;;chr5:134369879..134369898,-!p2@PITX1!1.86!72.15!PITX1;;chr8:22550982..22550999,-!p1@EGR3!1.78!160.34!EGR3;;chr5:134369905..134369972,-!p1@PITX1!1.67!69.75!PITX1;;chr9:132427883..132427951,+!p2@PRRX2!1.60!38.48!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.57!96.21!OSR1;;chr10:131762504..131762555,-!p1@EBF3!1.53!32.87!EBF3;;chr10:28034739..28034756,-!p1@MKX!1.50!30.47!MKX;;chr9:132427972..132428056,+!p1@PRRX2!1.48!37.68!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.46!70.55!ZFPM2;;chr9:128509663..128509715,+!p1@PBX3!1.45!90.59!PBX3;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.26!HOXA11;;chr10:63809106..63809127,+!p1@ARID5B!1.43!332.71!ARID5B;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!129.88!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.43!79.37!GATA6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.42!27.26!GLIS1;;chr5:137801160..137801176,+!p1@EGR1!1.39!2221.54!EGR1;;chr5:321810..321877,+!p1@AHRR!1.39!73.76!AHRR;;chr1:170633348..170633399,+!p2@PRRX1!1.38!31.27!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.33!34.47!CREB3L1;;chr5:137804405..137804444,+!p3@EGR1!1.31!23.25!EGR1;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.64!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.27!17.64!HOXA11;;chr14:75745523..75745537,+!p1@FOS!1.26!1990.65!FOS;;chr2:66662281..66662308,+!p1@MEIS1!1.25!56.92!MEIS1;;chr5:92919452..92919496,+!p11@NR2F1!1.25!16.84!NR2F1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.04!TFAP2A;;chr17:1959369..1959388,+!p2@HIC1!1.22!40.89!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!1.21!19.24!ZFPM2;;chr8:99956662..99956684,+!p1@OSR2!1.18!21.65!OSR2;;chr3:12329358..12329393,+!p3@PPARG!1.17!33.67!PPARG;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.44!FOXF2;;chr5:92920456..92920488,+!p9@NR2F1!1.15!15.23!NR2F1;;chr2:121493425..121493474,+!p1@GLI2!1.14!28.06!GLI2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.14!12.83!SEBOX;;chr12:115121962..115121987,-!p1@TBX3!1.13!103.42!TBX3;;chr10:63809013..63809041,+!p3@ARID5B!1.13!69.75!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!1.13!56.92!MEIS2;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.36!GATA2;;chr14:61116183..61116208,-!p1@SIX1!1.12!46.50!SIX1;;chr19:13134457..13134462,+!p5@NFIX!1.12!21.65!NFIX;;chr9:16870710..16870763,-!p1@BNC2!1.11!20.84!BNC2;;chr1:164528616..164528660,+!p5@PBX1!1.10!24.05!PBX1;;chr2:66662249..66662267,+!p2@MEIS1!1.09!43.29!MEIS1;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.04!GATA6;;chr3:128212033..128212051,-!p1@GATA2!1.09!11.22!GATA2;;chr3:69788576..69788648,+!p1@MITF!1.08!58.52!MITF;;chrX:66763856..66763896,+!p1@AR!1.08!16.03!AR;;chr5:137804357..137804390,+!p4@EGR1!1.07!12.83!EGR1;;chr7:28448965..28448994,+!p2@CREB5!1.06!37.68!CREB5;;chr15:37390850..37390909,-!p3@MEIS2!1.06!20.84!MEIS2;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.64!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.06!12.03!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.06!10.42!SMAD3;;chr5:137804484..137804498,+!p2@EGR1!1.05!41.69!EGR1;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.23!NFIX;;chr1:164528687..164528711,+!p6@PBX1!1.05!12.03!PBX1;;chr19:45971246..45971265,+!p1@FOSB!1.04!188.40!FOSB;;chr5:92918919..92918942,+!p1@NR2F1!1.04!44.90!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.62!HOXA9;;chr10:63809077..63809089,+!p5@ARID5B!1.02!20.84!ARID5B;;chr2:121493492..121493537,+!p2@GLI2!1.00!15.23!GLI2;;chr7:42276787..42276815,-!p1@GLI3!0.98!23.25!GLI3;;chr13:37494365..37494381,-!p1@SMAD9!0.98!15.23!SMAD9;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.22!PRDM8;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!429.72!NFKBIZ;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.44!PPARG;;chr20:45142154..45142227,-!p1@ZNF334!0.95!16.03!ZNF334;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.43!TBX18;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.63!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.82!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.95!8.82!NR2F1;;chr15:37392616..37392638,-!p2@MEIS2!0.94!24.85!MEIS2;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.85!TWIST2;;chr10:63809090..63809097,+!p7@ARID5B!0.92!10.42!ARID5B;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.03!TFAP2A;;chr6:1389989..1390019,+!p2@FOXF2!0.91!7.22!FOXF2;;chr12:115121770..115121781,-!p4@TBX3!0.91!7.22!TBX3;;chr16:51185172..51185197,-!p1@SALL1!0.91!7.22!SALL1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.22!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!0.90!409.67!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.98!PLAGL1;;chr1:164528445..164528459,+!p2@PBX1!0.90!22.45!PBX1;;chr9:102584262..102584276,+!p1@NR4A3!0.90!16.03!NR4A3;;chr10:77161504..77161530,-!p1@ZNF503!0.89!94.60!ZNF503;;chr7:28220198..28220269,-!p2@JAZF1!0.88!62.53!JAZF1;;chrX:66763815..66763854,+!p2@AR!0.88!8.82!AR;;chr5:92919100..92919135,+!p3@NR2F1!0.88!8.02!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.88!7.22!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.87!139.50!SNAI2;;chr18:22932080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|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.50!314.27!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.30!241.32!FOXF1;;chr12:52445218..52445237,+!p1@NR4A1!1.94!1028.60!NR4A1;;chr5:134369879..134369898,-!p2@PITX1!1.86!72.15!PITX1;;chr8:22550982..22550999,-!p1@EGR3!1.78!160.34!EGR3;;chr5:134369905..134369972,-!p1@PITX1!1.67!69.75!PITX1;;chr9:132427883..132427951,+!p2@PRRX2!1.60!38.48!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.57!96.21!OSR1;;chr10:131762504..131762555,-!p1@EBF3!1.53!32.87!EBF3;;chr10:28034739..28034756,-!p1@MKX!1.50!30.47!MKX;;chr9:132427972..132428056,+!p1@PRRX2!1.48!37.68!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.46!70.55!ZFPM2;;chr9:128509663..128509715,+!p1@PBX3!1.45!90.59!PBX3;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.26!HOXA11;;chr10:63809106..63809127,+!p1@ARID5B!1.43!332.71!ARID5B;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!129.88!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.43!79.37!GATA6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.42!27.26!GLIS1;;chr5:137801160..137801176,+!p1@EGR1!1.39!2221.54!EGR1;;chr5:321810..321877,+!p1@AHRR!1.39!73.76!AHRR;;chr1:170633348..170633399,+!p2@PRRX1!1.38!31.27!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.33!34.47!CREB3L1;;chr5:137804405..137804444,+!p3@EGR1!1.31!23.25!EGR1;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.64!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.27!17.64!HOXA11;;chr14:75745523..75745537,+!p1@FOS!1.26!1990.65!FOS;;chr2:66662281..66662308,+!p1@MEIS1!1.25!56.92!MEIS1;;chr5:92919452..92919496,+!p11@NR2F1!1.25!16.84!NR2F1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.04!TFAP2A;;chr17:1959369..1959388,+!p2@HIC1!1.22!40.89!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!1.21!19.24!ZFPM2;;chr8:99956662..99956684,+!p1@OSR2!1.18!21.65!OSR2;;chr3:12329358..12329393,+!p3@PPARG!1.17!33.67!PPARG;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.44!FOXF2;;chr5:92920456..92920488,+!p9@NR2F1!1.15!15.23!NR2F1;;chr2:121493425..121493474,+!p1@GLI2!1.14!28.06!GLI2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.14!12.83!SEBOX;;chr12:115121962..115121987,-!p1@TBX3!1.13!103.42!TBX3;;chr10:63809013..63809041,+!p3@ARID5B!1.13!69.75!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!1.13!56.92!MEIS2;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.36!GATA2;;chr14:61116183..61116208,-!p1@SIX1!1.12!46.50!SIX1;;chr19:13134457..13134462,+!p5@NFIX!1.12!21.65!NFIX;;chr9:16870710..16870763,-!p1@BNC2!1.11!20.84!BNC2;;chr1:164528616..164528660,+!p5@PBX1!1.10!24.05!PBX1;;chr2:66662249..66662267,+!p2@MEIS1!1.09!43.29!MEIS1;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.04!GATA6;;chr3:128212033..128212051,-!p1@GATA2!1.09!11.22!GATA2;;chr3:69788576..69788648,+!p1@MITF!1.08!58.52!MITF;;chrX:66763856..66763896,+!p1@AR!1.08!16.03!AR;;chr5:137804357..137804390,+!p4@EGR1!1.07!12.83!EGR1;;chr7:28448965..28448994,+!p2@CREB5!1.06!37.68!CREB5;;chr15:37390850..37390909,-!p3@MEIS2!1.06!20.84!MEIS2;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.64!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.06!12.03!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.06!10.42!SMAD3;;chr5:137804484..137804498,+!p2@EGR1!1.05!41.69!EGR1;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.23!NFIX;;chr1:164528687..164528711,+!p6@PBX1!1.05!12.03!PBX1;;chr19:45971246..45971265,+!p1@FOSB!1.04!188.40!FOSB;;chr5:92918919..92918942,+!p1@NR2F1!1.04!44.90!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.62!HOXA9;;chr10:63809077..63809089,+!p5@ARID5B!1.02!20.84!ARID5B;;chr2:121493492..121493537,+!p2@GLI2!1.00!15.23!GLI2;;chr7:42276787..42276815,-!p1@GLI3!0.98!23.25!GLI3;;chr13:37494365..37494381,-!p1@SMAD9!0.98!15.23!SMAD9;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.22!PRDM8;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!429.72!NFKBIZ;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.44!PPARG;;chr20:45142154..45142227,-!p1@ZNF334!0.95!16.03!ZNF334;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.43!TBX18;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.63!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.82!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.95!8.82!NR2F1;;chr15:37392616..37392638,-!p2@MEIS2!0.94!24.85!MEIS2;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.85!TWIST2;;chr10:63809090..63809097,+!p7@ARID5B!0.92!10.42!ARID5B;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.03!TFAP2A;;chr6:1389989..1390019,+!p2@FOXF2!0.91!7.22!FOXF2;;chr12:115121770..115121781,-!p4@TBX3!0.91!7.22!TBX3;;chr16:51185172..51185197,-!p1@SALL1!0.91!7.22!SALL1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.22!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!0.90!409.67!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.98!PLAGL1;;chr1:164528445..164528459,+!p2@PBX1!0.90!22.45!PBX1;;chr9:102584262..102584276,+!p1@NR4A3!0.90!16.03!NR4A3;;chr10:77161504..77161530,-!p1@ZNF503!0.89!94.60!ZNF503;;chr7:28220198..28220269,-!p2@JAZF1!0.88!62.53!JAZF1;;chrX:66763815..66763854,+!p2@AR!0.88!8.82!AR;;chr5:92919100..92919135,+!p3@NR2F1!0.88!8.02!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.88!7.22!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.87!139.50!SNAI2;;chr18:22932080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Line 38: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/sacrococcigeal%2520teratoma%2520cell%2520line%253aHTST.CNhs11829.10695-109G2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/sacrococcigeal%2520teratoma%2520cell%2520line%253aHTST.CNhs11829.10695-109G2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/sacrococcigeal%2520teratoma%2520cell%2520line%253aHTST.CNhs11829.10695-109G2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/sacrococcigeal%2520teratoma%2520cell%2520line%253aHTST.CNhs11829.10695-109G2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/sacrococcigeal%2520teratoma%2520cell%2520line%253aHTST.CNhs11829.10695-109G2.hg38.nobarcode.ctss.bed.gz
|id=FF:10695-109G2
|id=FF:10695-109G2
|is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
|is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11829
|library_id=CNhs11829
|library_id_phase_based=2:CNhs11829
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10695
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10695
|name=sacrococcigeal teratoma cell line:HTST
|name=sacrococcigeal teratoma cell line:HTST
|namespace=FANTOM5
|namespace=FANTOM5
Line 47: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11829,LSID829,release010,COMPLETED
|profile_hcage=CNhs11829,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 86: Line 99:
|top_motifs=MYBL2:1.9479235086;GZF1:1.88391862059;GLI1..3:1.792867178;TFAP2{A,C}:1.56969955615;PATZ1:1.55186584678;SRF:1.52044099684;TAL1_TCF{3,4,12}:1.46285558327;DBP:1.40375979297;ESR1:1.34675502964;LHX3,4:1.34614929651;MZF1:1.30851895114;ZNF238:1.25445679649;FOXL1:1.14957647682;PAX1,9:1.10556890494;POU6F1:1.09930253274;GTF2I:1.084762036;MAZ:1.08447029277;TFAP4:1.06982453016;MTE{core}:1.058946602;TEAD1:1.05179647202;NKX3-1:1.04744004691;TEF:1.02267555963;POU5F1:0.99342819327;TFAP2B:0.988756422351;ATF6:0.98274454266;EGR1..3:0.968128814976;MED-1{core}:0.961217082984;KLF4:0.959606684225;HIC1:0.951675610169;GFI1B:0.925221282845;NFIX:0.884250416675;TLX1..3_NFIC{dimer}:0.821296188864;PAX8:0.814042067269;POU3F1..4:0.812231191262;FOXA2:0.789197656215;STAT5{A,B}:0.75781416123;ZNF423:0.739597787289;FOXO1,3,4:0.725797120905;NR6A1:0.724208223173;ONECUT1,2:0.717490845088;VSX1,2:0.699483142181;HSF1,2:0.695699547908;EBF1:0.692147128234;TBP:0.690807442683;MTF1:0.682676752895;MYFfamily:0.672473487852;HOX{A5,B5}:0.658178816739;HMGA1,2:0.650324781179;SOX5:0.646992695344;XBP1:0.644550293073;FOX{F1,F2,J1}:0.618469567244;RREB1:0.597419324816;NFATC1..3:0.592187599197;XCPE1{core}:0.576472181186;NR1H4:0.572209168101;ALX4:0.568767530164;FOX{D1,D2}:0.550495299106;TP53:0.550107193546;PRDM1:0.547071237971;GTF2A1,2:0.542745172282;PAX4:0.530512780419;SOX17:0.526852368505;HMX1:0.515686960358;NANOG{mouse}:0.487594340937;ZFP161:0.467536379391;AIRE:0.450138068845;TFDP1:0.422006093076;ZBTB6:0.421479492694;CRX:0.413954041894;SPZ1:0.393496901057;NHLH1,2:0.377498020524;HLF:0.350929565713;TFCP2:0.335396874259;MAFB:0.323696591647;EVI1:0.319112420957;HAND1,2:0.319000917671;STAT2,4,6:0.291747088112;HOX{A4,D4}:0.285052643004;NKX2-2,8:0.276250820568;RORA:0.276196147053;NKX2-3_NKX2-5:0.260524043342;ZNF148:0.250463748923;FOXQ1:0.24487399527;ZBTB16:0.244495698286;LEF1_TCF7_TCF7L1,2:0.242095246176;TBX4,5:0.23316286352;TOPORS:0.225624610029;HOXA9_MEIS1:0.217542464137;RXR{A,B,G}:0.211869672516;HNF1A:0.196979093548;BREu{core}:0.183665411252;NFE2L2:0.183663072161;HBP1_HMGB_SSRP1_UBTF:0.168198287348;FOXM1:0.1663644658;GCM1,2:0.146878522519;PITX1..3:0.145911239535;CDX1,2,4:0.140299294356;PRRX1,2:0.133556502263;UFEwm:0.133268938771;GFI1:0.132859122253;FOXD3:0.117799149684;SP1:0.113096480773;PAX3,7:0.105309888336;AHR_ARNT_ARNT2:0.0903413857916;JUN:0.0811319254884;NR3C1:0.0766982381318;REST:0.0718000040044;PBX1:0.0521762495457;MEF2{A,B,C,D}:0.028650589887;PDX1:0.0283395884273;NANOG:0.0152089510361;HOX{A6,A7,B6,B7}:0.00715268235165;RBPJ:-0.00616046884415;PAX6:-0.018302832092;NFE2:-0.0272639007834;ZNF384:-0.0457685434043;PAX5:-0.0468492310664;BPTF:-0.0549905929265;IRF1,2:-0.0712570892253;CUX2:-0.109811531395;NKX6-1,2:-0.127550453535;T:-0.128020256751;ZIC1..3:-0.12821262816;ATF2:-0.12872946298;FOSL2:-0.136241496949;BACH2:-0.159707367126;FOS_FOS{B,L1}_JUN{B,D}:-0.162322959839;CDC5L:-0.208651365086;NKX2-1,4:-0.211493838643;NFKB1_REL_RELA:-0.22112650732;CEBPA,B_DDIT3:-0.22272289132;RUNX1..3:-0.232720283896;GATA4:-0.234603885886;HNF4A_NR2F1,2:-0.2352937465;POU2F1..3:-0.240067217529;ATF5_CREB3:-0.242652025163;ATF4:-0.259892331152;FOX{I1,J2}:-0.267480477089;EN1,2:-0.270875497915;NFIL3:-0.282253897123;ADNP_IRX_SIX_ZHX:-0.293225213455;GATA6:-0.293528945918;MYB:-0.302010491476;POU1F1:-0.307836685289;RFX1:-0.311172286704;IRF7:-0.311958761523;IKZF2:-0.317794234034;SOX2:-0.319993569248;RXRA_VDR{dimer}:-0.342134721364;FOXP1:-0.383079387954;AR:-0.392515937456;IKZF1:-0.398302844454;TGIF1:-0.415210988671;bHLH_family:-0.428828257035;HES1:-0.431340566909;CREB1:-0.43921124155;PPARG:-0.449416482623;NR5A1,2:-0.462226888078;EP300:-0.473157971138;DMAP1_NCOR{1,2}_SMARC:-0.51742467213;SMAD1..7,9:-0.53188906687;RFX2..5_RFXANK_RFXAP:-0.543883103194;ETS1,2:-0.549294107762;YY1:-0.558272966928;LMO2:-0.563714680683;FOXP3:-0.563793521909;SOX{8,9,10}:-0.625869738376;ESRRA:-0.627844121147;SPI1:-0.629565150952;ZNF143:-0.660413387002;E2F1..5:-0.673182793798;TLX2:-0.743733071367;FOXN1:-0.759883057753;SPIB:-0.765318544648;SREBF1,2:-0.773419872751;ELK1,4_GABP{A,B1}:-0.907059136946;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.910335166343;OCT4_SOX2{dimer}:-0.95506621057;PAX2:-0.964872205835;NRF1:-0.965437333671;SNAI1..3:-0.993768138008;ALX1:-0.99416052752;NFE2L1:-1.0178031455;NKX3-2:-1.05028430482;ARID5B:-1.08232287978;ZEB1:-1.12678325178;HIF1A:-1.17203141171;MYOD1:-1.18619953206;ELF1,2,4:-1.23366466541;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.24043250084;NFY{A,B,C}:-1.5702976503;STAT1,3:-1.60863736666
|top_motifs=MYBL2:1.9479235086;GZF1:1.88391862059;GLI1..3:1.792867178;TFAP2{A,C}:1.56969955615;PATZ1:1.55186584678;SRF:1.52044099684;TAL1_TCF{3,4,12}:1.46285558327;DBP:1.40375979297;ESR1:1.34675502964;LHX3,4:1.34614929651;MZF1:1.30851895114;ZNF238:1.25445679649;FOXL1:1.14957647682;PAX1,9:1.10556890494;POU6F1:1.09930253274;GTF2I:1.084762036;MAZ:1.08447029277;TFAP4:1.06982453016;MTE{core}:1.058946602;TEAD1:1.05179647202;NKX3-1:1.04744004691;TEF:1.02267555963;POU5F1:0.99342819327;TFAP2B:0.988756422351;ATF6:0.98274454266;EGR1..3:0.968128814976;MED-1{core}:0.961217082984;KLF4:0.959606684225;HIC1:0.951675610169;GFI1B:0.925221282845;NFIX:0.884250416675;TLX1..3_NFIC{dimer}:0.821296188864;PAX8:0.814042067269;POU3F1..4:0.812231191262;FOXA2:0.789197656215;STAT5{A,B}:0.75781416123;ZNF423:0.739597787289;FOXO1,3,4:0.725797120905;NR6A1:0.724208223173;ONECUT1,2:0.717490845088;VSX1,2:0.699483142181;HSF1,2:0.695699547908;EBF1:0.692147128234;TBP:0.690807442683;MTF1:0.682676752895;MYFfamily:0.672473487852;HOX{A5,B5}:0.658178816739;HMGA1,2:0.650324781179;SOX5:0.646992695344;XBP1:0.644550293073;FOX{F1,F2,J1}:0.618469567244;RREB1:0.597419324816;NFATC1..3:0.592187599197;XCPE1{core}:0.576472181186;NR1H4:0.572209168101;ALX4:0.568767530164;FOX{D1,D2}:0.550495299106;TP53:0.550107193546;PRDM1:0.547071237971;GTF2A1,2:0.542745172282;PAX4:0.530512780419;SOX17:0.526852368505;HMX1:0.515686960358;NANOG{mouse}:0.487594340937;ZFP161:0.467536379391;AIRE:0.450138068845;TFDP1:0.422006093076;ZBTB6:0.421479492694;CRX:0.413954041894;SPZ1:0.393496901057;NHLH1,2:0.377498020524;HLF:0.350929565713;TFCP2:0.335396874259;MAFB:0.323696591647;EVI1:0.319112420957;HAND1,2:0.319000917671;STAT2,4,6:0.291747088112;HOX{A4,D4}:0.285052643004;NKX2-2,8:0.276250820568;RORA:0.276196147053;NKX2-3_NKX2-5:0.260524043342;ZNF148:0.250463748923;FOXQ1:0.24487399527;ZBTB16:0.244495698286;LEF1_TCF7_TCF7L1,2:0.242095246176;TBX4,5:0.23316286352;TOPORS:0.225624610029;HOXA9_MEIS1:0.217542464137;RXR{A,B,G}:0.211869672516;HNF1A:0.196979093548;BREu{core}:0.183665411252;NFE2L2:0.183663072161;HBP1_HMGB_SSRP1_UBTF:0.168198287348;FOXM1:0.1663644658;GCM1,2:0.146878522519;PITX1..3:0.145911239535;CDX1,2,4:0.140299294356;PRRX1,2:0.133556502263;UFEwm:0.133268938771;GFI1:0.132859122253;FOXD3:0.117799149684;SP1:0.113096480773;PAX3,7:0.105309888336;AHR_ARNT_ARNT2:0.0903413857916;JUN:0.0811319254884;NR3C1:0.0766982381318;REST:0.0718000040044;PBX1:0.0521762495457;MEF2{A,B,C,D}:0.028650589887;PDX1:0.0283395884273;NANOG:0.0152089510361;HOX{A6,A7,B6,B7}:0.00715268235165;RBPJ:-0.00616046884415;PAX6:-0.018302832092;NFE2:-0.0272639007834;ZNF384:-0.0457685434043;PAX5:-0.0468492310664;BPTF:-0.0549905929265;IRF1,2:-0.0712570892253;CUX2:-0.109811531395;NKX6-1,2:-0.127550453535;T:-0.128020256751;ZIC1..3:-0.12821262816;ATF2:-0.12872946298;FOSL2:-0.136241496949;BACH2:-0.159707367126;FOS_FOS{B,L1}_JUN{B,D}:-0.162322959839;CDC5L:-0.208651365086;NKX2-1,4:-0.211493838643;NFKB1_REL_RELA:-0.22112650732;CEBPA,B_DDIT3:-0.22272289132;RUNX1..3:-0.232720283896;GATA4:-0.234603885886;HNF4A_NR2F1,2:-0.2352937465;POU2F1..3:-0.240067217529;ATF5_CREB3:-0.242652025163;ATF4:-0.259892331152;FOX{I1,J2}:-0.267480477089;EN1,2:-0.270875497915;NFIL3:-0.282253897123;ADNP_IRX_SIX_ZHX:-0.293225213455;GATA6:-0.293528945918;MYB:-0.302010491476;POU1F1:-0.307836685289;RFX1:-0.311172286704;IRF7:-0.311958761523;IKZF2:-0.317794234034;SOX2:-0.319993569248;RXRA_VDR{dimer}:-0.342134721364;FOXP1:-0.383079387954;AR:-0.392515937456;IKZF1:-0.398302844454;TGIF1:-0.415210988671;bHLH_family:-0.428828257035;HES1:-0.431340566909;CREB1:-0.43921124155;PPARG:-0.449416482623;NR5A1,2:-0.462226888078;EP300:-0.473157971138;DMAP1_NCOR{1,2}_SMARC:-0.51742467213;SMAD1..7,9:-0.53188906687;RFX2..5_RFXANK_RFXAP:-0.543883103194;ETS1,2:-0.549294107762;YY1:-0.558272966928;LMO2:-0.563714680683;FOXP3:-0.563793521909;SOX{8,9,10}:-0.625869738376;ESRRA:-0.627844121147;SPI1:-0.629565150952;ZNF143:-0.660413387002;E2F1..5:-0.673182793798;TLX2:-0.743733071367;FOXN1:-0.759883057753;SPIB:-0.765318544648;SREBF1,2:-0.773419872751;ELK1,4_GABP{A,B1}:-0.907059136946;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.910335166343;OCT4_SOX2{dimer}:-0.95506621057;PAX2:-0.964872205835;NRF1:-0.965437333671;SNAI1..3:-0.993768138008;ALX1:-0.99416052752;NFE2L1:-1.0178031455;NKX3-2:-1.05028430482;ARID5B:-1.08232287978;ZEB1:-1.12678325178;HIF1A:-1.17203141171;MYOD1:-1.18619953206;ELF1,2,4:-1.23366466541;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.24043250084;NFY{A,B,C}:-1.5702976503;STAT1,3:-1.60863736666
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10695-109G2;search_select_hide=table117:FF:10695-109G2
|DRA_sample_Accession=CAGE@DRS007889
|accession_numbers=DRX007995;DRR008867;DRZ000292;DRZ001677;CAGE
|library_id=CNhs11829
}}
}}

Latest revision as of 14:33, 3 June 2020

Name:sacrococcigeal teratoma cell line:HTST
Species:Human (Homo sapiens)
Library ID:CNhs11829
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexmale
age2 months
cell typeunclassifiable
cell lineHTST
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005407
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11829 CAGE DRX007995 DRR008867
Accession ID Hg19

Library idBAMCTSS
CNhs11829 DRZ000292 DRZ001677
Accession ID Hg38

Library idBAMCTSS
CNhs11829 DRZ011642 DRZ013027
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0271
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.326
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0375
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0473
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.256
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.357
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.792
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.364
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.102
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.532
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.256
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.532
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.256
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11829

Jaspar motifP-value
MA0002.20.0435
MA0003.10.66
MA0004.10.111
MA0006.10.419
MA0007.10.577
MA0009.10.726
MA0014.10.141
MA0017.10.155
MA0018.21.75336e-4
MA0019.10.295
MA0024.10.0016
MA0025.10.0187
MA0027.10.679
MA0028.15.73368e-7
MA0029.10.942
MA0030.10.0255
MA0031.10.269
MA0035.20.789
MA0038.10.182
MA0039.23.64689e-4
MA0040.10.0193
MA0041.10.216
MA0042.10.0362
MA0043.10.0373
MA0046.10.336
MA0047.20.957
MA0048.10.8
MA0050.10.0812
MA0051.10.245
MA0052.10.826
MA0055.10.043
MA0057.10.611
MA0058.10.00958
MA0059.10.00838
MA0060.11.94852e-10
MA0061.10.335
MA0062.25.39183e-13
MA0065.20.0451
MA0066.10.271
MA0067.10.168
MA0068.11.39869e-5
MA0069.10.366
MA0070.10.379
MA0071.10.755
MA0072.10.74
MA0073.10.534
MA0074.10.206
MA0076.13.20503e-9
MA0077.10.944
MA0078.10.556
MA0079.20.881
MA0080.22.97623e-7
MA0081.16.55426e-4
MA0083.17.75371e-10
MA0084.10.893
MA0087.10.783
MA0088.10.05
MA0090.10.00375
MA0091.10.00513
MA0092.10.202
MA0093.10.0705
MA0099.20.0242
MA0100.10.173
MA0101.10.332
MA0102.20.492
MA0103.10.00174
MA0104.20.0023
MA0105.10.0374
MA0106.10.826
MA0107.10.457
MA0108.24.27438e-7
MA0111.10.46
MA0112.20.17
MA0113.10.661
MA0114.10.0602
MA0115.10.0106
MA0116.10.0125
MA0117.10.51
MA0119.10.166
MA0122.10.367
MA0124.10.966
MA0125.10.73
MA0131.10.367
MA0135.10.27
MA0136.12.87914e-12
MA0137.20.171
MA0138.20.923
MA0139.10.101
MA0140.10.94
MA0141.10.18
MA0142.10.706
MA0143.10.522
MA0144.10.684
MA0145.10.641
MA0146.10.197
MA0147.10.00239
MA0148.10.91
MA0149.10.237
MA0150.10.0569
MA0152.10.0737
MA0153.10.339
MA0154.10.192
MA0155.10.664
MA0156.14.23592e-12
MA0157.10.654
MA0159.10.0517
MA0160.10.561
MA0162.10.846
MA0163.10.0317
MA0164.10.975
MA0258.10.272
MA0259.10.0494



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11829

Novel motifP-value
10.0554
100.0644
1000.377
1010.323
1020.00602
1030.843
1040.685
1050.894
1060.139
1070.0274
1080.286
1090.0217
110.393
1100.288
1110.0367
1120.325
1130.698
1140.366
1150.672
1160.241
1170.00862
1180.018
1190.695
120.417
1200.21
1210.0138
1220.161
1230.097
1240.75
1250.0107
1260.806
1270.387
1280.011
1290.104
130.0168
1300.548
1310.353
1320.603
1330.107
1340.176
1350.39
1360.255
1370.18
1380.92
1390.811
140.499
1400.402
1410.188
1420.683
1430.758
1440.363
1450.821
1460.614
1470.346
1480.54
1490.751
150.0897
1500.918
1510.979
1520.199
1530.413
1540.515
1550.0682
1560.644
1570.78
1580.127
1590.877
160.611
1600.629
1610.325
1620.218
1630.928
1640.867
1650.816
1660.00547
1670.2
1680.473
1690.792
170.964
180.328
190.563
20.558
200.409
210.361
220.852
230.0493
240.0729
250.0187
260.787
270.527
280.464
290.00398
30.553
300.169
310.592
327.27765e-6
330.0939
340.364
350.968
360.0195
370.212
380.301
390.325
40.735
400.0159
410.587
420.657
430.728
440.512
450.415
460.835
470.0674
480.0461
490.714
50.493
500.747
510.84
520.0962
530.444
540.466
550.168
560.978
570.417
580.513
590.502
60.227
600.61
610.279
620.713
630.895
640.459
650.503
660.372
670.51
680.241
690.935
70.0796
700.845
710.0792
720.558
730.415
740.279
750.0331
760.649
770.904
780.133
790.141
80.814
800.998
810.87
820.408
830.144
840.632
850.562
860.682
870.16
880.463
890.986
90.37
900.344
910.756
920.59
930.25
940.717
950.014
960.993
970.454
980.373
990.0909



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11829


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
3307 (teratoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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