FF:10726-110A6: Difference between revisions

Latest revision as of 15:02, 3 June 2020

Name:	liposarcoma cell line:SW 872
Species:	Human (Homo sapiens)
Library ID:	CNhs11851
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	unclassifiable
dev stage	NA
sex	male
age	36
cell type	adipocyte
cell line	SW 872
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005058

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11851		CAGE		DRX007921		DRR008793

Accession ID Hg19

Library id		BAM		CTSS
CNhs11851		DRZ000218		DRZ001603

Accession ID Hg38

Library id		BAM		CTSS
CNhs11851		DRZ011568		DRZ012953

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.431
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0887
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.086
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0454
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0887
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0295
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.021
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.393
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0887
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0466
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0384
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0466
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.351
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0745
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.00433
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11851

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00859
MA0003.1	MA0003.1	0.265
MA0004.1	MA0004.1	0.964
MA0006.1	MA0006.1	0.866
MA0007.1	MA0007.1	0.983
MA0009.1	MA0009.1	0.25
MA0014.1	MA0014.1	0.284
MA0017.1	MA0017.1	0.0605
MA0018.2	MA0018.2	0.304
MA0019.1	MA0019.1	0.313
MA0024.1	MA0024.1	0.0011
MA0025.1	MA0025.1	0.951
MA0027.1	MA0027.1	0.311
MA0028.1	MA0028.1	0.0817
MA0029.1	MA0029.1	0.196
MA0030.1	MA0030.1	0.15
MA0031.1	MA0031.1	0.522
MA0035.2	MA0035.2	0.686
MA0038.1	MA0038.1	3.5011e-5
MA0039.2	MA0039.2	0.0915
MA0040.1	MA0040.1	0.921
MA0041.1	MA0041.1	0.243
MA0042.1	MA0042.1	0.0945
MA0043.1	MA0043.1	0.748
MA0046.1	MA0046.1	0.303
MA0047.2	MA0047.2	0.884
MA0048.1	MA0048.1	0.198
MA0050.1	MA0050.1	1.64459e-7
MA0051.1	MA0051.1	4.49751e-9
MA0052.1	MA0052.1	0.476
MA0055.1	MA0055.1	0.0593
MA0057.1	MA0057.1	0.769
MA0058.1	MA0058.1	0.853
MA0059.1	MA0059.1	0.362
MA0060.1	MA0060.1	9.58062e-14
MA0061.1	MA0061.1	0.0317
MA0062.2	MA0062.2	0.0331
MA0065.2	MA0065.2	0.0803
MA0066.1	MA0066.1	0.0398
MA0067.1	MA0067.1	0.841
MA0068.1	MA0068.1	0.994
MA0069.1	MA0069.1	0.59
MA0070.1	MA0070.1	0.0327
MA0071.1	MA0071.1	0.549
MA0072.1	MA0072.1	0.45
MA0073.1	MA0073.1	0.954
MA0074.1	MA0074.1	0.993
MA0076.1	MA0076.1	0.0293
MA0077.1	MA0077.1	0.174
MA0078.1	MA0078.1	0.782
MA0079.2	MA0079.2	0.118
MA0080.2	MA0080.2	9.14368e-7
MA0081.1	MA0081.1	0.294
MA0083.1	MA0083.1	0.67
MA0084.1	MA0084.1	0.933
MA0087.1	MA0087.1	0.406
MA0088.1	MA0088.1	0.365
MA0090.1	MA0090.1	0.907
MA0091.1	MA0091.1	0.0547
MA0092.1	MA0092.1	0.165
MA0093.1	MA0093.1	0.923
MA0099.2	MA0099.2	0.00429
MA0100.1	MA0100.1	0.421
MA0101.1	MA0101.1	0.749
MA0102.2	MA0102.2	0.345
MA0103.1	MA0103.1	0.00957
MA0104.2	MA0104.2	0.614
MA0105.1	MA0105.1	6.14327e-8
MA0106.1	MA0106.1	0.172
MA0107.1	MA0107.1	0.363
MA0108.2	MA0108.2	0.0321
MA0111.1	MA0111.1	0.337
MA0112.2	MA0112.2	1.33597e-5
MA0113.1	MA0113.1	0.303
MA0114.1	MA0114.1	0.161
MA0115.1	MA0115.1	0.714
MA0116.1	MA0116.1	1.1951e-5
MA0117.1	MA0117.1	0.259
MA0119.1	MA0119.1	0.468
MA0122.1	MA0122.1	0.632
MA0124.1	MA0124.1	0.587
MA0125.1	MA0125.1	0.74
MA0131.1	MA0131.1	0.28
MA0135.1	MA0135.1	0.334
MA0136.1	MA0136.1	6.16885e-4
MA0137.2	MA0137.2	0.112
MA0138.2	MA0138.2	0.108
MA0139.1	MA0139.1	0.148
MA0140.1	MA0140.1	0.683
MA0141.1	MA0141.1	0.124
MA0142.1	MA0142.1	0.393
MA0143.1	MA0143.1	0.16
MA0144.1	MA0144.1	0.694
MA0145.1	MA0145.1	0.176
MA0146.1	MA0146.1	0.677
MA0147.1	MA0147.1	0.623
MA0148.1	MA0148.1	0.798
MA0149.1	MA0149.1	0.655
MA0150.1	MA0150.1	0.0395
MA0152.1	MA0152.1	0.493
MA0153.1	MA0153.1	0.794
MA0154.1	MA0154.1	7.99882e-4
MA0155.1	MA0155.1	0.776
MA0156.1	MA0156.1	0.901
MA0157.1	MA0157.1	0.902
MA0159.1	MA0159.1	0.109
MA0160.1	MA0160.1	0.311
MA0162.1	MA0162.1	0.303
MA0163.1	MA0163.1	9.68942e-8
MA0164.1	MA0164.1	0.552
MA0258.1	MA0258.1	9.27692e-4
MA0259.1	MA0259.1	0.586

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11851

Novel motif	Logo	P-value
1	1	0.0903
10	10	0.0697
100	100	0.808
101	101	0.2
102	102	0.444
103	103	0.229
104	104	0.834
105	105	0.212
106	106	0.00792
107	107	0.275
108	108	0.467
109	109	0.628
11	11	0.172
110	110	0.329
111	111	0.655
112	112	0.102
113	113	0.689
114	114	0.14
115	115	0.729
116	116	0.586
117	117	0.501
118	118	0.32
119	119	0.066
12	12	0.955
120	120	0.972
121	121	0.555
122	122	0.789
123	123	0.154
124	124	0.0601
125	125	0.595
126	126	0.842
127	127	0.763
128	128	0.0266
129	129	0.589
13	13	0.369
130	130	0.19
131	131	0.209
132	132	0.9
133	133	0.174
134	134	0.194
135	135	0.0954
136	136	0.218
137	137	0.656
138	138	0.803
139	139	0.00156
14	14	0.472
140	140	0.0956
141	141	0.149
142	142	0.455
143	143	0.175
144	144	0.501
145	145	0.284
146	146	0.544
147	147	0.734
148	148	0.00804
149	149	0.206
15	15	0.096
150	150	0.848
151	151	0.347
152	152	0.98
153	153	0.0961
154	154	0.19
155	155	0.201
156	156	0.873
157	157	0.965
158	158	0.316
159	159	0.924
16	16	0.196
160	160	0.166
161	161	0.275
162	162	0.686
163	163	0.739
164	164	0.418
165	165	0.157
166	166	0.439
167	167	0.0568
168	168	0.238
169	169	0.0439
17	17	0.231
18	18	0.0823
19	19	0.237
2	2	0.427
20	20	0.567
21	21	0.509
22	22	0.687
23	23	0.029
24	24	0.669
25	25	0.258
26	26	0.084
27	27	0.264
28	28	0.708
29	29	0.636
3	3	0.115
30	30	0.909
31	31	0.354
32	32	0.0124
33	33	0.502
34	34	0.924
35	35	0.108
36	36	0.0918
37	37	0.193
38	38	0.365
39	39	0.531
4	4	0.75
40	40	0.62
41	41	0.3
42	42	0.422
43	43	0.1
44	44	0.27
45	45	0.777
46	46	0.0413
47	47	0.253
48	48	0.407
49	49	0.109
5	5	0.0858
50	50	0.63
51	51	0.43
52	52	0.116
53	53	0.398
54	54	0.554
55	55	0.406
56	56	0.85
57	57	0.151
58	58	0.11
59	59	0.139
6	6	0.684
60	60	0.0275
61	61	0.572
62	62	0.0259
63	63	0.416
64	64	0.259
65	65	0.167
66	66	0.0752
67	67	0.872
68	68	0.866
69	69	0.9
7	7	0.189
70	70	0.00457
71	71	0.106
72	72	0.407
73	73	0.781
74	74	0.0118
75	75	0.119
76	76	0.816
77	77	0.329
78	78	0.173
79	79	0.0552
8	8	0.497
80	80	0.401
81	81	0.148
82	82	0.00577
83	83	0.627
84	84	0.692
85	85	0.0171
86	86	0.345
87	87	0.262
88	88	0.587
89	89	0.0575
9	9	0.41
90	90	0.0587
91	91	0.11
92	92	0.0437
93	93	0.194
94	94	0.00597
95	95	0.862
96	96	0.0419
97	97	0.527
98	98	0.23
99	99	0.57

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11851

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103743 SW-872 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0103744 (liposarcoma cell line sample)
0103743 (SW-872 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005058
+|accession_numbers=CAGE;DRX007921;DRR008793;DRZ000218;DRZ001603;DRZ011568;DRZ012953
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10412392..10412409,-!p4@TFAP2A!1.70!56.09!TFAP2A;;chr20:50179368..50179392,-!p2@NFATC2!1.67!58.58!NFATC2;;chr16:86544113..86544145,+!p1@FOXF1!1.63!51.44!FOXF1;;chr7:27153454..27153469,-!p2@HOXA3!1.45!27.42!HOXA3;;chr6:10415276..10415341,-!p2@TFAP2A!1.32!24.14!TFAP2A;;chr20:42543441..42543497,+!p1@TOX2!1.31!86.00!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.29!30.59!TFAP2A;;chr6:10412477..10412490,-!p10@TFAP2A!1.29!18.70!TFAP2A;;chr20:42543506..42543549,+!p2@TOX2!1.27!42.04!TOX2;;chr3:25470156..25470227,+!p2@RARB!1.23!15.98!RARB;;chr8:11561684..11561751,+!p1@GATA4!1.20!14.84!GATA4;;chr20:55204351..55204377,+!p1@TFAP2C!1.19!18.36!TFAP2C;;chr7:27183263..27183284,-!p2@HOXA5!1.19!14.39!HOXA5;;chr14:33403881..33403924,+!p1@NPAS3!1.17!13.94!NPAS3;;chr7:27183291..27183324,-!p1@HOXA5!1.15!13.26!HOXA5;;chr5:92918919..92918942,+!p1@NR2F1!1.14!57.45!NR2F1;;chr6:10415484..10415508,-!p3@TFAP2A!1.13!12.46!TFAP2A;;chr7:27196267..27196311,-!p1@HOXA7!1.12!12.12!HOXA7;;chr5:321810..321877,+!p1@AHRR!1.10!36.94!AHRR;;chr2:223163706..223163730,-!p1@PAX3!1.10!11.67!PAX3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.10!11.56!HOXC5;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.32!HOXB7;;chr17:46682321..46682362,-!p1@HOXB6!1.09!11.22!HOXB6;;chr3:147111198..147111225,+!p4@ZIC1!1.08!11.10!ZIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.66!C11orf9;;chr5:92919100..92919135,+!p3@NR2F1!1.05!12.46!NR2F1;;chr17:46622205..46622218,-!p3@HOXB2!1.05!11.78!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!10.08!HOXB8;;chr5:92920456..92920488,+!p9@NR2F1!1.00!10.65!NR2F1;;chr17:7197911..7197964,-!p1@YBX2!1.00!8.95!YBX2;;chr1:158975744..158975769,+!p10@IFI16!0.99!8.73!IFI16;;chr12:54402745..54402788,+!p1@HOXC8!0.99!8.73!HOXC8;;chr5:92919375..92919438,+!p6@NR2F1!0.93!8.27!NR2F1;;chr7:27170359..27170381,-!p1@HOXA4!0.93!7.48!HOXA4;;chr12:54402790..54402805,+!p2@HOXC8!0.92!7.37!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!0.92!7.25!HOXC9;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.32!TBX3;;chr3:193853927..193853944,+!p1@HES1!0.90!236.14!HES1;;chr1:158969752..158969780,+!p6@IFI16!0.90!12.35!IFI16;;chr15:96869511..96869525,+!p16@NR2F2!0.90!7.71!NR2F2;;chr12:85673977..85674015,+!p1@ALX1!0.90!6.91!ALX1;;chr18:19749541..19749557,+!p1@GATA6!0.89!22.44!GATA6;;chr17:46622114..46622138,-!p4@HOXB2!0.88!10.31!HOXB2;;chr17:46806067..46806097,-!p1@HOXB13!0.88!6.57!HOXB13;;chr7:27135533..27135546,-!p3@HOXA1!0.88!6.57!HOXA1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.62!HOXB2;;chr11:125034640..125034655,+!p1@PKNOX2!0.85!6.12!PKNOX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.84!30.82!NFE2L3;;chr16:54320675..54320715,-!p1@IRX3!0.84!13.26!IRX3;;chr15:67357924..67357952,+!p2@SMAD3!0.83!40.91!SMAD3;;chr3:12329358..12329393,+!p3@PPARG!0.83!14.84!PPARG;;chr8:99956662..99956684,+!p1@OSR2!0.83!9.18!OSR2;;chr14:62162285..62162296,+!p3@HIF1A!0.82!31.61!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.82!15.41!NCOA7;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.33!HOXA3;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.33!HOXD8;;chr3:147111231..147111281,+!p3@ZIC1!0.80!5.33!ZIC1;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.01!MYBL2;;chr5:92918894..92918912,+!p2@NR2F1!0.79!18.24!NR2F1;;chr9:73029219..73029289,-!p2@KLF9!0.79!17.00!KLF9;;chr12:54694758..54694805,-!p1@NFE2!0.79!6.35!NFE2;;chr17:46622229..46622257,-!p6@HOXB2!0.79!6.23!HOXB2;;chr5:142780189..142780223,-!p6@NR3C1!0.79!5.21!NR3C1;;chr7:27135591..27135658,-!p1@HOXA1!0.78!10.20!HOXA1;;chr16:54320617..54320643,-!p3@IRX3!0.78!6.69!IRX3;;chr7:27183191..27183214,-!p4@HOXA5!0.78!4.99!HOXA5;;chr17:46703687..46703740,-!p1@HOXB9!0.77!4.87!HOXB9;;chr2:172967621..172967637,-!p1@DLX2!0.76!13.82!DLX2;;chr16:54320646..54320672,-!p2@IRX3!0.76!7.59!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.76!7.48!ETV4;;chr16:67197654..67197716,+!p3@HSF4!0.76!4.76!HSF4;;chr7:27135568..27135590,-!p2@HOXA1!0.76!4.76!HOXA1;;chr12:100867627..100867652,+!p1@NR1H4!0.76!4.76!NR1H4;;chr15:96874244..96874259,+!p5@NR2F2!0.75!12.01!NR2F2;;chr16:54320158..54320200,-!p5@IRX3!0.75!6.91!IRX3;;chr12:100867653..100867677,+!p2@NR1H4!0.75!4.65!NR1H4;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.65!TFAP2A;;chr14:33408072..33408114,+!p2@NPAS3!0.74!5.44!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!0.74!4.53!DLX1;;chr17:70117153..70117174,+!p1@SOX9!0.73!50.31!SOX9;;chr20:48599506..48599526,+!p1@SNAI1!0.73!31.50!SNAI1;;chr20:50721803..50721857,-!p2@ZFP64!0.73!7.14!ZFP64;;chr20:62680984..62680999,-!p1@SOX18!0.73!6.01!SOX18;;chr6:34204921..34204939,+!p3@HMGA1!0.72!143.23!HMGA1;;chr11:65667846..65667868,-!p1@FOSL1!0.72!126.34!FOSL1;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.95!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.72!20.51!PCBP3;;chr17:41277372..41277418,-!p1@BRCA1!0.72!17.22!BRCA1;;chr5:134369905..134369972,-!p1@PITX1!0.72!6.91!PITX1;;chr11:120107344..120107351,+!p1@POU2F3!0.72!5.33!POU2F3;;chr12:115121770..115121781,-!p4@TBX3!0.72!4.31!TBX3;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.31!EN2;;chr3:25469815..25469866,+!p3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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10726-110A6
 |is_a=EFO:0002091;;FF:0000210;;FF:0103743
 |is_obsolete=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10726
 |name=liposarcoma cell line:SW 872
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
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-|profile_rnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 60: / Line 77: @@
 |rna_weight_ug=22.52124
 |sample_age=36
+|sample_category=cell lines
 |sample_cell_catalog=HTB-92
 |sample_cell_line=SW 872
@@ Line 81: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10726-110A6;search_select_hide=table117:FF:10726-110A6
 }}

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FF:10726-110A6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0