FF:10726-110A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005058 | ||
|accession_numbers=CAGE;DRX007921;DRR008793;DRZ000218;DRZ001603;DRZ011568;DRZ012953 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0103744,FF:0103743 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100400 | |fonse_cell_line=FF:0100400 | ||
|fonse_cell_line_closure=FF:0100400 | |fonse_cell_line_closure=FF:0100400 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aSW%2520872.CNhs11851.10726-110A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10726-110A6 | |id=FF:10726-110A6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103743 | ||
|is_obsolete= | |||
|library_id=CNhs11851 | |||
|library_id_phase_based=2:CNhs11851 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10726 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10726 | |||
|name=liposarcoma cell line:SW 872 | |name=liposarcoma cell line:SW 872 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11851,LSID830,release010,COMPLETED | |profile_hcage=CNhs11851,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.023308462951519,0,0,0.046616925903038,0,0.144992235028799,0.046616925903038,-0.0495569648809706,0.062599788786858,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100301999951573,0,0,0,0,0,0.0643819470736865,0,0,-0.0058724453430701,0,0,0,0,0,0,0,0,0,0,0.162339843341744,0,0.0385740769383519,0.046616925903038,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0846043469601916,0,0.183243703963381,0,0,0.0976035328700494,0,0,0,0,0,0,0,0,0.162339843341744,0,0,0,0,0.046616925903038,0,0,0,0,0,0,0,0,0,0.046616925903038,0.111121136132015,0,0,0,0.106902256506351,0.267010687997284,0,0,0.023308462951519,0,-0.0514184253346685,-0.0129515178286515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134414713693198,0.088711522602743,0,0,0,-0.233848494743905,0,0,0.046616925903038,0,0,0.046616925903038 | |||
|repeat_enrich_byname=0,0,0,0.046616925903038,-0.0514184253346685,0,0,0.088711522602743,0,0,0,0,0,0,0,0,-0.120094730849772,0.0619086079676534,0.722658293284122,0.185500331452128,0,0,0.141648617018313,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,0.111927291752429,0.023308462951519,0,0.046616925903038,0,0,0.419283512893497,0,-0.0108315655949975,-0.0217273351743303,0,0,0,0,0.0765900571411981,0,0.0740676762894057,0.0443639761123748,-0.0266644280196604,-0.377410783322471,-0.00018773298934207,0,0,0,-0.0495591761941995,0.293156256935931,0,0,-0.121779851751874,-0.0558239355884155,0,0,0.205125087726392,0,-0.100265668505384,-0.144072547184011,0,0.0167520972263273,0,0,0,0,0,0,0,0,0,0,0,0.107014270166363,0.0458764959496074,0,0.088711522602743,0.127084144435792,0,0.0867670248250298,0,0.046616925903038,0.826575497829822,0.19668769536861,0.0216248978158924,0.0155846814407674,0.024764293249255,-0.255772801106875,-0.0370645284205958,0.357404987186882,0.0202150327862549,-0.0586903267683955,-0.189981719549847,0.088711522602743,0.289905053169845,0.142051417283608,0.0275043751557524,0.0311355686129304,0.0794569596824913,-0.173563231365212,-0.0737827039699235,0,0,0.21043001638863,-0.266429494369531,0.0132990500907154,0.046616925903038,-0.0968805548842941,0.123504982306705,0.393180429861189,0.298318783355096,0.062248123964651,0.335846175246379,-0.0162240655051516,-0.0447459194469185,0.0746437701799286,0.199079523933739,0.103391451664504,0,0.0853741379407316,0.161648246380098,0.535125294784022,0.108929570613225,0.0803411673809268,0.181226939467158,0.126602899005778,0.210111746704133,0.0633314857941215,0.079533187144567,0,0.0410864708014752,0.222329184240931,0,0,0,0.0280325685428466,0.046616925903038,0.201625418085872,-0.0106327628804415,-0.144144038952802,0,0.0518505188615275,0.113814771783467,0.078576500969918,0,0.0901450524240158,0.280236065205986,-0.0178380871553059,0.00972975150408129,0.037476284690378,-0.0237562596224593,-0.064604569564045,-0.164990696339003,0.534021375994568,0.136500333271321,-0.0547578229428808,-0.194332315280706,0.106902256506351,-0.145550091965665,0.134247754559395,1.6315664053654,0.046616925903038,0.0270082495155378,-0.122450959403628,0.101057365679022,0.235400725503821,0.194947160083146,-0.104207048642459,0,0.0773211388456647,0,0.263597546809927,0.260672663639103,-0.392672448677648,-0.0574617864209093,0.046616925903038,-0.0593279031847849,-0.788130937773974,0,0.158928136839019,0,0.046616925903038,0.154943181780546,0.111121136132015,-0.0861247448923456,0.20959864431032,0,0.120472841644261,0,0,0.182107108484159,0.0698342273507968,0,-0.177907572790273,-0.0387194958440696,-0.155047318063931,-0.027259550832191,0.046616925903038,0,0.131416932170996,0,0.046616925903038,0.328161662004111,-0.0169879192347637,0.308540722438986,-0.0583791814036093,0,-0.0853143465027365,0,0,0.0174193941179707,0,0.166218600255503,0,0,0.162392038202915,0,0,0,0,0.0378941453689711,0.046616925903038,0,0,0,0,0,0,0.139396706422594,0.0764791797945516,0,-0.0753135125432323,0,0.088711522602743,0.046616925903038,0.22527633332512,0,0.088711522602743,0,0,0.290492655270864,0.00881112969732015,0.00406672875937189,0.063542072217896,0,0,0,-0.0207762424703283,-0.00828940201157738,0.127084144435792,0.148373358708355,0,0,0,0.046616925903038,0.0025705328135317,0,0,0.023308462951519,0.0443557613013715,-0.011113531150626,-0.146015935719528,0,0,0,-0.114614558260046,0,0,0,0,-0.0248617294184121,0,0,-0.0357605041083533,0,-0.00273197022591187,0.172043130753159,0,0.038927007147185,0.0266477870963628,0.680075095709959,0.122383933199214,0,0.661133659159089,0,0.00617166265588155,-0.204784026425072,-0.0357532970626284,0.088711522602743,0.0426172962717791,0,0,0,0,0,0.046616925903038,-0.0193673523166092,0,0,0,0,0,0,0,0,0,0,0.046616925903038,-0.0658103371032455,0.102723103424636,0,0,0,0.046616925903038,0,0,0,0.0646054995238399,0.010281284170315,0,0,0,0,0,0.162339843341744,0,0,0.0272883532046559,0,0,0,0,0,0.183243703963381,0,0,0,0.046616925903038,0.078582651670678,0,0,0.00287393301247246,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.237262645595024,0,0,0,0,0,0.046616925903038,0,-0.0495569648809706,0,0.046616925903038,0,0,-0.0672674478059392,0,0,0,0.120479948535963,0,0.144992235028799,0.046616925903038,0,0,0,0,0,0.0443557613013715,0.023308462951519,0,0,0,0,0,0.127084144435792,0,0,0,0,0,0,0.00603302351913232,0.501282879456312,0.023308462951519,0.046616925903038,0.204916328111705,0,0,0.16792485492313,0,0,0,0,0,0,-0.0080319610770081,0.041033168524515,0,0,0,0,0,0,0.023308462951519,0,0,0,0,0,0,0,0,0,0,0.088711522602743,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.0643819470736865,0.046616925903038,0.023308462951519,-0.00332128719778308,0,0,0,0,0,0,0.203610135252792,0.0696787661337325,0.0745797759414333,0,0,0,-0.0310771095309361,0,0.046616925903038,0.114369195456064,0,0.128169772664245,0,0,0,0,0,0,0,0,0.127084144435792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.046616925903038,0.100301999951573,0,0,0,0,0,0,0,0,0,0,0,0,0.023308462951519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0466169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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=22.52124 | |rna_weight_ug=22.52124 | ||
|sample_age=36 | |sample_age=36 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=HTB-92 | |sample_cell_catalog=HTB-92 | ||
|sample_cell_line=SW 872 | |sample_cell_line=SW 872 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.16865506415065e-269!GO:0043231;intracellular membrane-bound organelle;5.32393087033701e-224!GO:0043227;membrane-bound organelle;5.32393087033701e-224!GO:0043226;organelle;2.17423307034504e-223!GO:0043229;intracellular organelle;8.16744479087298e-223!GO:0005737;cytoplasm;8.96667001532879e-191!GO:0044422;organelle part;4.28672235229141e-152!GO:0044446;intracellular organelle part;2.22838546566236e-150!GO:0044444;cytoplasmic part;6.06796676646711e-132!GO:0032991;macromolecular complex;8.5499163831071e-106!GO:0005634;nucleus;9.31620104354975e-98!GO:0044238;primary metabolic process;1.67951090644263e-93!GO:0044237;cellular metabolic process;1.67951090644263e-93!GO:0043170;macromolecule metabolic process;1.28429537628536e-89!GO:0030529;ribonucleoprotein complex;9.17157126776834e-83!GO:0005515;protein binding;5.49877934744764e-80!GO:0044428;nuclear part;1.2063228159438e-78!GO:0043233;organelle lumen;9.39103805208067e-74!GO:0031974;membrane-enclosed lumen;9.39103805208067e-74!GO:0003723;RNA binding;9.11766745030432e-70!GO:0005739;mitochondrion;2.36135000134794e-64!GO:0016043;cellular component organization and biogenesis;1.20231526532873e-58!GO:0043234;protein complex;2.24739233819258e-55!GO:0043283;biopolymer metabolic process;4.73611419518883e-55!GO:0031090;organelle membrane;6.91318715144634e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.76141687721093e-50!GO:0005840;ribosome;2.0401758316523e-48!GO:0033036;macromolecule localization;1.50902481374257e-47!GO:0010467;gene expression;1.25452568338816e-46!GO:0019538;protein metabolic process;2.87815060855655e-46!GO:0006396;RNA processing;4.51689228560112e-46!GO:0031981;nuclear lumen;9.94257651687554e-46!GO:0006412;translation;1.4953416322593e-45!GO:0015031;protein transport;4.62876130669716e-45!GO:0008104;protein localization;1.39255479060117e-43!GO:0045184;establishment of protein localization;5.16203742417514e-43!GO:0003735;structural constituent of ribosome;2.3253425511657e-41!GO:0044429;mitochondrial part;3.19764673938089e-41!GO:0044260;cellular macromolecule metabolic process;2.12669592912314e-40!GO:0006996;organelle organization and biogenesis;2.52830293886646e-40!GO:0031967;organelle envelope;3.7420968556108e-40!GO:0044267;cellular protein metabolic process;4.23879762429991e-40!GO:0031975;envelope;9.81420221719045e-40!GO:0046907;intracellular transport;4.23909303839309e-39!GO:0043228;non-membrane-bound organelle;2.72924513402928e-38!GO:0043232;intracellular non-membrane-bound organelle;2.72924513402928e-38!GO:0016071;mRNA metabolic process;2.00125633396494e-37!GO:0065003;macromolecular complex assembly;1.40797935511031e-36!GO:0033279;ribosomal subunit;2.91681319295496e-36!GO:0006259;DNA metabolic process;8.00302615885811e-36!GO:0009059;macromolecule biosynthetic process;1.21187480794834e-34!GO:0005829;cytosol;1.5275794756061e-34!GO:0008380;RNA splicing;2.72978099355964e-34!GO:0009058;biosynthetic process;1.41537188244851e-33!GO:0022607;cellular component assembly;1.99869988210065e-33!GO:0044249;cellular biosynthetic process;6.72126030124945e-33!GO:0007049;cell cycle;7.95188788221349e-33!GO:0003676;nucleic acid binding;7.58860662886052e-32!GO:0006397;mRNA processing;1.37070473675253e-31!GO:0006886;intracellular protein transport;2.63058844297476e-31!GO:0005654;nucleoplasm;2.28482682717046e-29!GO:0051649;establishment of cellular localization;4.34032280830866e-28!GO:0051641;cellular localization;4.68351127154652e-28!GO:0000166;nucleotide binding;1.19978279426809e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.6845307365492e-27!GO:0005740;mitochondrial envelope;1.11158759948009e-26!GO:0019866;organelle inner membrane;1.60784137173e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.35718936904656e-25!GO:0000278;mitotic cell cycle;3.39307497282846e-25!GO:0022402;cell cycle process;7.63470677972168e-25!GO:0031966;mitochondrial membrane;8.10706549815643e-25!GO:0005681;spliceosome;2.13012091057424e-24!GO:0005743;mitochondrial inner membrane;5.01227242968702e-24!GO:0044451;nucleoplasm part;1.01644750185674e-23!GO:0016070;RNA metabolic process;2.41335387780884e-23!GO:0016462;pyrophosphatase activity;3.97488037690742e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.54584037286666e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.45302703688087e-23!GO:0017111;nucleoside-triphosphatase activity;1.61515586063954e-22!GO:0012505;endomembrane system;3.46835981285702e-22!GO:0005694;chromosome;5.46240530111018e-22!GO:0006119;oxidative phosphorylation;3.67982389727228e-21!GO:0032553;ribonucleotide binding;7.76905627639167e-21!GO:0032555;purine ribonucleotide binding;7.76905627639167e-21!GO:0044445;cytosolic part;8.26960293007051e-21!GO:0044427;chromosomal part;2.27251302724645e-20!GO:0017076;purine nucleotide binding;7.56563202531152e-20!GO:0022403;cell cycle phase;9.98569548804591e-20!GO:0044455;mitochondrial membrane part;1.61188622208615e-19!GO:0000087;M phase of mitotic cell cycle;4.06570839945725e-19!GO:0015934;large ribosomal subunit;4.22539149500642e-19!GO:0005783;endoplasmic reticulum;5.5378849474138e-19!GO:0048770;pigment granule;6.1759939486696e-19!GO:0042470;melanosome;6.1759939486696e-19!GO:0007067;mitosis;7.20541791379299e-19!GO:0015935;small ribosomal subunit;2.85188507216805e-18!GO:0051276;chromosome organization and biogenesis;4.57650931097059e-18!GO:0051301;cell division;6.62116465090187e-18!GO:0006974;response to DNA damage stimulus;9.24546418146036e-18!GO:0031980;mitochondrial lumen;1.33250481398188e-17!GO:0005759;mitochondrial matrix;1.33250481398188e-17!GO:0006457;protein folding;1.33962140095195e-17!GO:0008134;transcription factor binding;1.4770589225936e-17!GO:0016874;ligase activity;1.82151054477794e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.56393124359483e-17!GO:0000279;M phase;7.5185464849573e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.04955896943942e-16!GO:0005746;mitochondrial respiratory chain;1.07026030738046e-16!GO:0022618;protein-RNA complex assembly;1.18108462662789e-16!GO:0032559;adenyl ribonucleotide binding;1.28450681084499e-16!GO:0005524;ATP binding;1.30754698646846e-16!GO:0005730;nucleolus;1.59155482045017e-16!GO:0044432;endoplasmic reticulum part;3.58096195325625e-16!GO:0006512;ubiquitin cycle;3.77887337850576e-16!GO:0006260;DNA replication;6.08887284007884e-16!GO:0006281;DNA repair;6.51760469307823e-16!GO:0006605;protein targeting;7.7026347007901e-16!GO:0005794;Golgi apparatus;8.40671693346347e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.00598946854703e-15!GO:0003954;NADH dehydrogenase activity;1.00598946854703e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00598946854703e-15!GO:0030554;adenyl nucleotide binding;1.48290412076224e-15!GO:0044265;cellular macromolecule catabolic process;8.34815912326734e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.9035639052097e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.03605347474719e-14!GO:0005761;mitochondrial ribosome;2.09235143727423e-14!GO:0000313;organellar ribosome;2.09235143727423e-14!GO:0048193;Golgi vesicle transport;3.44287217885527e-14!GO:0051186;cofactor metabolic process;3.6052847569835e-14!GO:0019941;modification-dependent protein catabolic process;3.77280565451441e-14!GO:0043632;modification-dependent macromolecule catabolic process;3.77280565451441e-14!GO:0008135;translation factor activity, nucleic acid binding;4.20304642790478e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.48944069581101e-14!GO:0005635;nuclear envelope;4.64766278691584e-14!GO:0044257;cellular protein catabolic process;6.0784817296684e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.15531809827321e-13!GO:0045271;respiratory chain complex I;1.15531809827321e-13!GO:0005747;mitochondrial respiratory chain complex I;1.15531809827321e-13!GO:0006366;transcription from RNA polymerase II promoter;1.31702473648872e-13!GO:0006913;nucleocytoplasmic transport;1.4495642354251e-13!GO:0044453;nuclear membrane part;1.69998146204241e-13!GO:0050794;regulation of cellular process;1.73902043320229e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.8263150069206e-13!GO:0042773;ATP synthesis coupled electron transport;1.8263150069206e-13!GO:0043412;biopolymer modification;2.23544319912461e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.29348346253122e-13!GO:0043285;biopolymer catabolic process;2.48043827396812e-13!GO:0016192;vesicle-mediated transport;2.5728432829811e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.98505804642205e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.32200469343059e-13!GO:0051169;nuclear transport;3.47345719269987e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;3.88213717123342e-13!GO:0000375;RNA splicing, via transesterification reactions;3.88213717123342e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.88213717123342e-13!GO:0031965;nuclear membrane;5.00864343168785e-13!GO:0051082;unfolded protein binding;1.06727530122375e-12!GO:0006323;DNA packaging;1.15406735406326e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.61604034216167e-12!GO:0044248;cellular catabolic process;1.75303525616208e-12!GO:0051726;regulation of cell cycle;1.83612100549172e-12!GO:0016887;ATPase activity;2.17135549715739e-12!GO:0009719;response to endogenous stimulus;2.17135549715739e-12!GO:0009057;macromolecule catabolic process;2.52619865172379e-12!GO:0000074;regulation of progression through cell cycle;3.32289124780072e-12!GO:0042623;ATPase activity, coupled;3.39757084250619e-12!GO:0012501;programmed cell death;5.13145728607362e-12!GO:0042254;ribosome biogenesis and assembly;5.66655519392107e-12!GO:0006461;protein complex assembly;5.68314476055978e-12!GO:0006915;apoptosis;7.30751373412559e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.63510175125408e-12!GO:0030163;protein catabolic process;1.23575307189267e-11!GO:0008565;protein transporter activity;1.27888143777201e-11!GO:0006464;protein modification process;1.3646739521776e-11!GO:0004386;helicase activity;1.37961494185115e-11!GO:0003712;transcription cofactor activity;1.95978811264462e-11!GO:0005789;endoplasmic reticulum membrane;2.20640829806117e-11!GO:0015630;microtubule cytoskeleton;2.73002149050537e-11!GO:0005643;nuclear pore;4.35244530364918e-11!GO:0006732;coenzyme metabolic process;5.66592241142898e-11!GO:0008219;cell death;8.60466543118395e-11!GO:0016265;death;8.60466543118395e-11!GO:0016604;nuclear body;9.55890911361149e-11!GO:0008639;small protein conjugating enzyme activity;1.01805565095656e-10!GO:0000785;chromatin;1.1409099018315e-10!GO:0065004;protein-DNA complex assembly;1.66219697970479e-10!GO:0005793;ER-Golgi intermediate compartment;2.1957146012203e-10!GO:0003743;translation initiation factor activity;2.55635317784323e-10!GO:0004842;ubiquitin-protein ligase activity;2.57420586475488e-10!GO:0006333;chromatin assembly or disassembly;3.25275144913067e-10!GO:0048523;negative regulation of cellular process;3.55743840741596e-10!GO:0043687;post-translational protein modification;3.78299574305539e-10!GO:0017038;protein import;4.06955797451179e-10!GO:0006403;RNA localization;4.72676264950623e-10!GO:0006413;translational initiation;4.95179537121317e-10!GO:0050657;nucleic acid transport;5.18107754980555e-10!GO:0051236;establishment of RNA localization;5.18107754980555e-10!GO:0050658;RNA transport;5.18107754980555e-10!GO:0019787;small conjugating protein ligase activity;6.66941848586112e-10!GO:0065002;intracellular protein transport across a membrane;7.90951112830639e-10!GO:0008026;ATP-dependent helicase activity;8.73697217056084e-10!GO:0050789;regulation of biological process;9.41913054352863e-10!GO:0006446;regulation of translational initiation;2.04350833751908e-09!GO:0006163;purine nucleotide metabolic process;2.29249157719414e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.53118618798107e-09!GO:0009259;ribonucleotide metabolic process;3.05089856230317e-09!GO:0006399;tRNA metabolic process;3.80441749434685e-09!GO:0009055;electron carrier activity;4.24032242876507e-09!GO:0016881;acid-amino acid ligase activity;8.18205557504459e-09!GO:0048519;negative regulation of biological process;8.42740714239019e-09!GO:0046930;pore complex;8.97384060490615e-09!GO:0003697;single-stranded DNA binding;9.01835254580781e-09!GO:0003924;GTPase activity;9.28679744411718e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.80026387768231e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.03534527255837e-08!GO:0042981;regulation of apoptosis;1.04794873454883e-08!GO:0043566;structure-specific DNA binding;1.16215871615213e-08!GO:0009150;purine ribonucleotide metabolic process;1.31216379545011e-08!GO:0043067;regulation of programmed cell death;1.31525086064918e-08!GO:0006916;anti-apoptosis;1.3183695416924e-08!GO:0006164;purine nucleotide biosynthetic process;1.54907287911272e-08!GO:0043069;negative regulation of programmed cell death;1.86761684947649e-08!GO:0009060;aerobic respiration;2.27888308874289e-08!GO:0043066;negative regulation of apoptosis;2.88068241485934e-08!GO:0000775;chromosome, pericentric region;2.88068241485934e-08!GO:0051028;mRNA transport;3.87746869087691e-08!GO:0043623;cellular protein complex assembly;4.97004828248478e-08!GO:0009260;ribonucleotide biosynthetic process;5.22944388207069e-08!GO:0016568;chromatin modification;5.39314104561755e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.00780605043254e-08!GO:0016607;nuclear speck;6.28109111301346e-08!GO:0032446;protein modification by small protein conjugation;6.28227541413251e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.01350123487154e-08!GO:0006364;rRNA processing;7.18129648726962e-08!GO:0005839;proteasome core complex (sensu Eukaryota);7.30184137488492e-08!GO:0045333;cellular respiration;8.19479604475957e-08!GO:0005667;transcription factor complex;8.75424734923686e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.84304104684477e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.09925175294436e-08!GO:0009141;nucleoside triphosphate metabolic process;9.53291331800064e-08!GO:0016567;protein ubiquitination;9.59811950435634e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.00285341358153e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.00285341358153e-07!GO:0051170;nuclear import;1.0188427152308e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.11118939899463e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.1466066364155e-07!GO:0006099;tricarboxylic acid cycle;1.21492778732693e-07!GO:0046356;acetyl-CoA catabolic process;1.21492778732693e-07!GO:0030120;vesicle coat;1.25361032542419e-07!GO:0030662;coated vesicle membrane;1.25361032542419e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.31079293563413e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.43770973107187e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.43770973107187e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.43770973107187e-07!GO:0019222;regulation of metabolic process;1.66432299399828e-07!GO:0048475;coated membrane;2.1270097439083e-07!GO:0030117;membrane coat;2.1270097439083e-07!GO:0005819;spindle;2.13515391592358e-07!GO:0006334;nucleosome assembly;2.14969463425293e-07!GO:0031988;membrane-bound vesicle;2.40982813140401e-07!GO:0016072;rRNA metabolic process;2.45155532593089e-07!GO:0006606;protein import into nucleus;2.75914151837602e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.78161460897614e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.78161460897614e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.98893533012029e-07!GO:0015986;ATP synthesis coupled proton transport;3.20750959199095e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.20750959199095e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.27956511252137e-07!GO:0005788;endoplasmic reticulum lumen;3.29664562049404e-07!GO:0006084;acetyl-CoA metabolic process;3.47036099771088e-07!GO:0016563;transcription activator activity;3.6291110488859e-07!GO:0044431;Golgi apparatus part;3.63309048284539e-07!GO:0043038;amino acid activation;3.94551373260088e-07!GO:0006418;tRNA aminoacylation for protein translation;3.94551373260088e-07!GO:0043039;tRNA aminoacylation;3.94551373260088e-07!GO:0005813;centrosome;4.0240237316313e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.70484081440623e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.70484081440623e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.18128066822837e-07!GO:0004298;threonine endopeptidase activity;5.62572105196391e-07!GO:0009056;catabolic process;5.63632636055594e-07!GO:0051188;cofactor biosynthetic process;6.23102103521045e-07!GO:0031497;chromatin assembly;6.7811228539201e-07!GO:0051329;interphase of mitotic cell cycle;6.79691260442475e-07!GO:0005815;microtubule organizing center;7.28773434086837e-07!GO:0016779;nucleotidyltransferase activity;7.43828060111386e-07!GO:0000245;spliceosome assembly;7.90552406820849e-07!GO:0009117;nucleotide metabolic process;8.08475813168745e-07!GO:0006261;DNA-dependent DNA replication;9.19027447646415e-07!GO:0046034;ATP metabolic process;9.50074334979021e-07!GO:0016740;transferase activity;9.50074334979021e-07!GO:0005525;GTP binding;9.5322865841013e-07!GO:0005768;endosome;9.60740453027967e-07!GO:0031982;vesicle;9.60740453027967e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.00856684760601e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.07532119500659e-06!GO:0007005;mitochondrion organization and biogenesis;1.09328865265965e-06!GO:0051246;regulation of protein metabolic process;1.18411024745285e-06!GO:0003724;RNA helicase activity;1.55410169719022e-06!GO:0031410;cytoplasmic vesicle;1.6673687103682e-06!GO:0009109;coenzyme catabolic process;1.68600003706618e-06!GO:0019829;cation-transporting ATPase activity;1.7070845800793e-06!GO:0003713;transcription coactivator activity;1.74051496340377e-06!GO:0005773;vacuole;1.79642815323809e-06!GO:0000151;ubiquitin ligase complex;1.9713925508917e-06!GO:0006793;phosphorus metabolic process;1.97529450059484e-06!GO:0006796;phosphate metabolic process;1.97529450059484e-06!GO:0031324;negative regulation of cellular metabolic process;2.93008793417449e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.31933456492689e-06!GO:0051187;cofactor catabolic process;3.36638224672619e-06!GO:0051325;interphase;3.69384388672048e-06!GO:0016787;hydrolase activity;3.75074351451195e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.77683728147773e-06!GO:0045259;proton-transporting ATP synthase complex;3.88479172945185e-06!GO:0000075;cell cycle checkpoint;3.98430513783073e-06!GO:0006754;ATP biosynthetic process;4.20255004940656e-06!GO:0006753;nucleoside phosphate metabolic process;4.20255004940656e-06!GO:0007010;cytoskeleton organization and biogenesis;6.19512862445038e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.51063694689456e-06!GO:0065007;biological regulation;7.28214930644441e-06!GO:0006613;cotranslational protein targeting to membrane;7.63975207980137e-06!GO:0016564;transcription repressor activity;7.94302020837567e-06!GO:0007051;spindle organization and biogenesis;8.60297033209087e-06!GO:0000323;lytic vacuole;8.73633973450824e-06!GO:0005764;lysosome;8.73633973450824e-06!GO:0005657;replication fork;9.32355878686155e-06!GO:0016853;isomerase activity;9.59067780255696e-06!GO:0005762;mitochondrial large ribosomal subunit;9.91731084343514e-06!GO:0000315;organellar large ribosomal subunit;9.91731084343514e-06!GO:0051168;nuclear export;1.06130198190321e-05!GO:0016859;cis-trans isomerase activity;1.42106754422145e-05!GO:0045786;negative regulation of progression through cell cycle;1.54272149563192e-05!GO:0016310;phosphorylation;1.56712149782452e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5737514746841e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.58912444681067e-05!GO:0032561;guanyl ribonucleotide binding;1.64549682528031e-05!GO:0019001;guanyl nucleotide binding;1.64549682528031e-05!GO:0003714;transcription corepressor activity;1.72959188793778e-05!GO:0031323;regulation of cellular metabolic process;1.84788174190543e-05!GO:0005798;Golgi-associated vesicle;1.89915442524157e-05!GO:0008361;regulation of cell size;2.53290804498848e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.60640421024005e-05!GO:0009108;coenzyme biosynthetic process;2.79895442110965e-05!GO:0000139;Golgi membrane;2.79945383880349e-05!GO:0008654;phospholipid biosynthetic process;2.84052026650781e-05!GO:0006302;double-strand break repair;3.54470120103703e-05!GO:0008186;RNA-dependent ATPase activity;3.54751227809437e-05!GO:0009892;negative regulation of metabolic process;3.81739563122506e-05!GO:0051427;hormone receptor binding;4.02280358246823e-05!GO:0019899;enzyme binding;4.22569863927106e-05!GO:0016049;cell growth;4.47589399275973e-05!GO:0030867;rough endoplasmic reticulum membrane;4.55341939531816e-05!GO:0005874;microtubule;4.90899269917674e-05!GO:0001558;regulation of cell growth;4.98160962396342e-05!GO:0051052;regulation of DNA metabolic process;5.55138874560028e-05!GO:0006752;group transfer coenzyme metabolic process;5.71179418426478e-05!GO:0030133;transport vesicle;6.01552853712332e-05!GO:0003682;chromatin binding;6.58770932894452e-05!GO:0044440;endosomal part;6.86405562280856e-05!GO:0010008;endosome membrane;6.86405562280856e-05!GO:0007243;protein kinase cascade;8.05988940274893e-05!GO:0035257;nuclear hormone receptor binding;8.75141656998133e-05!GO:0000314;organellar small ribosomal subunit;9.07661328230435e-05!GO:0005763;mitochondrial small ribosomal subunit;9.07661328230435e-05!GO:0007088;regulation of mitosis;9.59213763431672e-05!GO:0003899;DNA-directed RNA polymerase activity;9.72666637489559e-05!GO:0045454;cell redox homeostasis;9.99986494071972e-05!GO:0003729;mRNA binding;0.000101837897185392!GO:0008094;DNA-dependent ATPase activity;0.000102650700946046!GO:0031252;leading edge;0.000104857797065276!GO:0004004;ATP-dependent RNA helicase activity;0.000112991013870202!GO:0005770;late endosome;0.000112991013870202!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000115776341210128!GO:0006350;transcription;0.00011641259928093!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000117061775221131!GO:0051789;response to protein stimulus;0.00012898268799593!GO:0006986;response to unfolded protein;0.00012898268799593!GO:0016481;negative regulation of transcription;0.000151990830280476!GO:0016363;nuclear matrix;0.000164328244014605!GO:0003690;double-stranded DNA binding;0.000169628707596846!GO:0030036;actin cytoskeleton organization and biogenesis;0.000181094548591375!GO:0043021;ribonucleoprotein binding;0.000225835974077462!GO:0007059;chromosome segregation;0.000228381414242626!GO:0048522;positive regulation of cellular process;0.000245949562882902!GO:0000776;kinetochore;0.000248736216338398!GO:0008250;oligosaccharyl transferase complex;0.000272574932213253!GO:0015980;energy derivation by oxidation of organic compounds;0.00028354846017575!GO:0000059;protein import into nucleus, docking;0.000289697946291238!GO:0006612;protein targeting to membrane;0.00029065439202202!GO:0048471;perinuclear region of cytoplasm;0.000290664687449497!GO:0008092;cytoskeletal protein binding;0.000330277751288472!GO:0016044;membrane organization and biogenesis;0.000378061718082308!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000400260447578469!GO:0033116;ER-Golgi intermediate compartment membrane;0.000430594986505154!GO:0006414;translational elongation;0.000445163600544842!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000446684156702202!GO:0005048;signal sequence binding;0.000455740504707403!GO:0000786;nucleosome;0.0004982904243146!GO:0007093;mitotic cell cycle checkpoint;0.000505833016750712!GO:0046474;glycerophospholipid biosynthetic process;0.000526390113446198!GO:0010468;regulation of gene expression;0.000545210664162671!GO:0006383;transcription from RNA polymerase III promoter;0.000560810128662462!GO:0004576;oligosaccharyl transferase activity;0.000561253945151384!GO:0006352;transcription initiation;0.000578857429077709!GO:0006091;generation of precursor metabolites and energy;0.000638093011436213!GO:0005791;rough endoplasmic reticulum;0.000653037219981899!GO:0005885;Arp2/3 protein complex;0.000653037219981899!GO:0016491;oxidoreductase activity;0.000685679692543727!GO:0051252;regulation of RNA metabolic process;0.000695916261608755!GO:0043681;protein import into mitochondrion;0.000744864711363625!GO:0015631;tubulin binding;0.000793488686061706!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000799234953329152!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000833116395420224!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000871869245673437!GO:0003702;RNA polymerase II transcription factor activity;0.000893150857219872!GO:0018196;peptidyl-asparagine modification;0.000908166593901761!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000908166593901761!GO:0030663;COPI coated vesicle membrane;0.000908408529233761!GO:0030126;COPI vesicle coat;0.000908408529233761!GO:0003684;damaged DNA binding;0.000931615561321313!GO:0006310;DNA recombination;0.000987640858491098!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103164390202877!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103164390202877!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103164390202877!GO:0019867;outer membrane;0.00106810384121864!GO:0030521;androgen receptor signaling pathway;0.0010704214801706!GO:0006891;intra-Golgi vesicle-mediated transport;0.00110225910908929!GO:0046489;phosphoinositide biosynthetic process;0.00110309382725871!GO:0005905;coated pit;0.00111209760054393!GO:0006626;protein targeting to mitochondrion;0.00120310539386858!GO:0005637;nuclear inner membrane;0.00122420326638211!GO:0030659;cytoplasmic vesicle membrane;0.00123281673668736!GO:0006402;mRNA catabolic process;0.00128583030400095!GO:0043488;regulation of mRNA stability;0.00129136632751681!GO:0043487;regulation of RNA stability;0.00129136632751681!GO:0000910;cytokinesis;0.00134264233972386!GO:0051920;peroxiredoxin activity;0.00136691804179263!GO:0031968;organelle outer membrane;0.00139044432775919!GO:0048500;signal recognition particle;0.0013966515581513!GO:0030029;actin filament-based process;0.0014279626081519!GO:0007017;microtubule-based process;0.0014279626081519!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00145482732815244!GO:0030137;COPI-coated vesicle;0.00153768941756631!GO:0019843;rRNA binding;0.0016242245516209!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00175245190571814!GO:0005684;U2-dependent spliceosome;0.0017994722228007!GO:0006405;RNA export from nucleus;0.0018863820782733!GO:0040008;regulation of growth;0.00191240179105357!GO:0005876;spindle microtubule;0.00191291910528624!GO:0006839;mitochondrial transport;0.00196253971155384!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00197525869642635!GO:0015399;primary active transmembrane transporter activity;0.00197525869642635!GO:0005769;early endosome;0.00211694900317751!GO:0043284;biopolymer biosynthetic process;0.00211694900317751!GO:0000082;G1/S transition of mitotic cell cycle;0.00217733212997676!GO:0042802;identical protein binding;0.00222135491247743!GO:0006275;regulation of DNA replication;0.00244699290873474!GO:0003678;DNA helicase activity;0.00249821747968456!GO:0008139;nuclear localization sequence binding;0.00260080014431198!GO:0032774;RNA biosynthetic process;0.00260571760413698!GO:0008033;tRNA processing;0.00265515367323872!GO:0009165;nucleotide biosynthetic process;0.00269797983129512!GO:0003746;translation elongation factor activity;0.00271935925148794!GO:0032200;telomere organization and biogenesis;0.0027838524194077!GO:0000723;telomere maintenance;0.0027838524194077!GO:0005741;mitochondrial outer membrane;0.00282274521746776!GO:0006351;transcription, DNA-dependent;0.00302009357757214!GO:0044433;cytoplasmic vesicle part;0.00332323910232641!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00334754970264206!GO:0046467;membrane lipid biosynthetic process;0.00335399729719011!GO:0030132;clathrin coat of coated pit;0.00341324036035028!GO:0045045;secretory pathway;0.00345902526888497!GO:0016251;general RNA polymerase II transcription factor activity;0.00352079137982289!GO:0030658;transport vesicle membrane;0.00360370793786671!GO:0044452;nucleolar part;0.00362192026820658!GO:0012506;vesicle membrane;0.00362792797418394!GO:0007052;mitotic spindle organization and biogenesis;0.00372535324696502!GO:0008312;7S RNA binding;0.00380191229113127!GO:0048468;cell development;0.00385566877678503!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00400204482281585!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00410935603480213!GO:0045047;protein targeting to ER;0.00410935603480213!GO:0035258;steroid hormone receptor binding;0.00438249111579692!GO:0030134;ER to Golgi transport vesicle;0.00440251429024948!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0044640797415063!GO:0030518;steroid hormone receptor signaling pathway;0.00448970705960638!GO:0030880;RNA polymerase complex;0.0048178276530741!GO:0030118;clathrin coat;0.00483966444431055!GO:0045941;positive regulation of transcription;0.00495330965382555!GO:0006401;RNA catabolic process;0.00495330965382555!GO:0007006;mitochondrial membrane organization and biogenesis;0.00500063817151734!GO:0045893;positive regulation of transcription, DNA-dependent;0.00501759331322261!GO:0032508;DNA duplex unwinding;0.00510496532629087!GO:0032392;DNA geometric change;0.00510496532629087!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00528132974817186!GO:0007264;small GTPase mediated signal transduction;0.00532514608811321!GO:0004674;protein serine/threonine kinase activity;0.00532514608811321!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00533459652519256!GO:0045892;negative regulation of transcription, DNA-dependent;0.00545861003836667!GO:0043596;nuclear replication fork;0.00576368731713195!GO:0000228;nuclear chromosome;0.00583411137943282!GO:0009112;nucleobase metabolic process;0.00585230447296831!GO:0003711;transcription elongation regulator activity;0.00587443749107598!GO:0006611;protein export from nucleus;0.00587443749107598!GO:0006268;DNA unwinding during replication;0.00588240649245071!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00596292792026224!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00596292792026224!GO:0048487;beta-tubulin binding;0.00598263476289798!GO:0006506;GPI anchor biosynthetic process;0.00598779174492874!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00657605077716388!GO:0004527;exonuclease activity;0.00658492896130374!GO:0007040;lysosome organization and biogenesis;0.00697625704751124!GO:0046483;heterocycle metabolic process;0.00738628913108807!GO:0045449;regulation of transcription;0.00740238443651964!GO:0017166;vinculin binding;0.00748234881886245!GO:0006284;base-excision repair;0.00748234881886245!GO:0006740;NADPH regeneration;0.00748745226917552!GO:0006098;pentose-phosphate shunt;0.00748745226917552!GO:0030127;COPII vesicle coat;0.00750056646442316!GO:0012507;ER to Golgi transport vesicle membrane;0.00750056646442316!GO:0030660;Golgi-associated vesicle membrane;0.00755703402675127!GO:0006650;glycerophospholipid metabolic process;0.00772239097837005!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00799489566583409!GO:0031902;late endosome membrane;0.00800047826505591!GO:0044262;cellular carbohydrate metabolic process;0.00808753911814136!GO:0003677;DNA binding;0.00809916396438235!GO:0030027;lamellipodium;0.00823798509228701!GO:0006509;membrane protein ectodomain proteolysis;0.00842522328233984!GO:0033619;membrane protein proteolysis;0.00842522328233984!GO:0005774;vacuolar membrane;0.00849748272714971!GO:0031072;heat shock protein binding;0.00849748272714971!GO:0001726;ruffle;0.00866501514050902!GO:0016584;nucleosome positioning;0.00869778024609048!GO:0006818;hydrogen transport;0.00887725265005415!GO:0016272;prefoldin complex;0.00887725265005415!GO:0007004;telomere maintenance via telomerase;0.00892272716805691!GO:0042158;lipoprotein biosynthetic process;0.00900285088407619!GO:0006338;chromatin remodeling;0.00904611341277654!GO:0006505;GPI anchor metabolic process;0.00911116956336011!GO:0032940;secretion by cell;0.00943599816498047!GO:0006672;ceramide metabolic process;0.00944622885857175!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00983821410548911!GO:0000428;DNA-directed RNA polymerase complex;0.00983821410548911!GO:0006950;response to stress;0.0100912445330804!GO:0006497;protein amino acid lipidation;0.010157028596013!GO:0008022;protein C-terminus binding;0.010157028596013!GO:0009116;nucleoside metabolic process;0.0102604909727987!GO:0043022;ribosome binding;0.0104505887972847!GO:0007346;regulation of progression through mitotic cell cycle;0.0104505887972847!GO:0015992;proton transport;0.0105977690397984!GO:0051087;chaperone binding;0.0105977690397984!GO:0050681;androgen receptor binding;0.0105977690397984!GO:0031124;mRNA 3'-end processing;0.0107937111343826!GO:0030119;AP-type membrane coat adaptor complex;0.0109596150966464!GO:0007033;vacuole organization and biogenesis;0.0109950421092581!GO:0043492;ATPase activity, coupled to movement of substances;0.0112350279785695!GO:0005869;dynactin complex;0.0112911423902182!GO:0030176;integral to endoplasmic reticulum membrane;0.0114019336829309!GO:0006144;purine base metabolic process;0.0114353805875136!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0115532828910829!GO:0000209;protein polyubiquitination;0.0120371310025201!GO:0009967;positive regulation of signal transduction;0.0123726549180786!GO:0006595;polyamine metabolic process;0.0125366596522897!GO:0046519;sphingoid metabolic process;0.0129279366892054!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0129279366892054!GO:0015002;heme-copper terminal oxidase activity;0.0129279366892054!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0129279366892054!GO:0004129;cytochrome-c oxidase activity;0.0129279366892054!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0132734580113398!GO:0046983;protein dimerization activity;0.0133755183549556!GO:0007050;cell cycle arrest;0.0135901705227278!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.013698165662185!GO:0005832;chaperonin-containing T-complex;0.0138211893125142!GO:0019887;protein kinase regulator activity;0.0141217071927795!GO:0047485;protein N-terminus binding;0.0146577075775379!GO:0006376;mRNA splice site selection;0.0147677077486296!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0147677077486296!GO:0006270;DNA replication initiation;0.0149606904999412!GO:0008047;enzyme activator activity;0.0152516198851252!GO:0045792;negative regulation of cell size;0.0152736641810928!GO:0005669;transcription factor TFIID complex;0.0152847903954809!GO:0000792;heterochromatin;0.0155151268245522!GO:0016126;sterol biosynthetic process;0.0159319644915816!GO:0051101;regulation of DNA binding;0.0161263228471357!GO:0008180;signalosome;0.0162474922433168!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168218079193295!GO:0030308;negative regulation of cell growth;0.0173260389016541!GO:0030522;intracellular receptor-mediated signaling pathway;0.0176709399727616!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0178421470621079!GO:0000781;chromosome, telomeric region;0.0179771282600239!GO:0006897;endocytosis;0.0180956698289819!GO:0010324;membrane invagination;0.0180956698289819!GO:0044454;nuclear chromosome part;0.0183291500537082!GO:0006979;response to oxidative stress;0.018443708599536!GO:0005758;mitochondrial intermembrane space;0.0188783567573612!GO:0048518;positive regulation of biological process;0.019369875574315!GO:0006892;post-Golgi vesicle-mediated transport;0.0197083244465176!GO:0030131;clathrin adaptor complex;0.0202430894469687!GO:0000339;RNA cap binding;0.0202689341407268!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0207540630662668!GO:0043601;nuclear replisome;0.0208703995194526!GO:0030894;replisome;0.0208703995194526!GO:0051540;metal cluster binding;0.0208703995194526!GO:0051536;iron-sulfur cluster binding;0.0208703995194526!GO:0042393;histone binding;0.0209238178015354!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0210493448044723!GO:0010257;NADH dehydrogenase complex assembly;0.0210493448044723!GO:0033108;mitochondrial respiratory chain complex assembly;0.0210493448044723!GO:0030384;phosphoinositide metabolic process;0.0212111692866953!GO:0005862;muscle thin filament tropomyosin;0.0213443208157053!GO:0000725;recombinational repair;0.0213443208157053!GO:0000724;double-strand break repair via homologous recombination;0.0213443208157053!GO:0044437;vacuolar part;0.0216582569454064!GO:0009081;branched chain family amino acid metabolic process;0.0217509291601039!GO:0030125;clathrin vesicle coat;0.0217509291601039!GO:0030665;clathrin coated vesicle membrane;0.0217509291601039!GO:0004448;isocitrate dehydrogenase activity;0.0218822385100704!GO:0008538;proteasome activator activity;0.0219837425664551!GO:0016197;endosome transport;0.0220740511164805!GO:0008168;methyltransferase activity;0.0220740511164805!GO:0006220;pyrimidine nucleotide metabolic process;0.0223101016520809!GO:0043189;H4/H2A histone acetyltransferase complex;0.0224579410305102!GO:0008632;apoptotic program;0.0225159697542246!GO:0005765;lysosomal membrane;0.0226962830547861!GO:0043414;biopolymer methylation;0.0229908259381677!GO:0008017;microtubule binding;0.0232117116896149!GO:0016741;transferase activity, transferring one-carbon groups;0.0232917509447872!GO:0051539;4 iron, 4 sulfur cluster binding;0.0235793549752751!GO:0000049;tRNA binding;0.0238997970269687!GO:0006278;RNA-dependent DNA replication;0.0245451864290592!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0245451864290592!GO:0032906;transforming growth factor-beta2 production;0.0247298550937668!GO:0032909;regulation of transforming growth factor-beta2 production;0.0247298550937668!GO:0022415;viral reproductive process;0.0247962856032788!GO:0006378;mRNA polyadenylation;0.0249755009091002!GO:0006289;nucleotide-excision repair;0.0249777312899206!GO:0008320;protein transmembrane transporter activity;0.0253398773199588!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0253398773199588!GO:0031570;DNA integrity checkpoint;0.0257407811470377!GO:0043624;cellular protein complex disassembly;0.0263471864140875!GO:0031371;ubiquitin conjugating enzyme complex;0.0266237080613332!GO:0005652;nuclear lamina;0.0266774951844257!GO:0032984;macromolecular complex disassembly;0.0268500577914569!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0276234180701977!GO:0046426;negative regulation of JAK-STAT cascade;0.0278143616981551!GO:0022890;inorganic cation transmembrane transporter activity;0.0278654953985018!GO:0008408;3'-5' exonuclease activity;0.0282764958548277!GO:0003923;GPI-anchor transamidase activity;0.0294814274841823!GO:0016255;attachment of GPI anchor to protein;0.0294814274841823!GO:0042765;GPI-anchor transamidase complex;0.0294814274841823!GO:0019207;kinase regulator activity;0.0296387439219917!GO:0007021;tubulin folding;0.0296455696719693!GO:0004860;protein kinase inhibitor activity;0.0296455696719693!GO:0043241;protein complex disassembly;0.0298983327822509!GO:0051059;NF-kappaB binding;0.0298983327822509!GO:0016791;phosphoric monoester hydrolase activity;0.0304854110512027!GO:0008610;lipid biosynthetic process;0.0305668317315492!GO:0031529;ruffle organization and biogenesis;0.0309592479330488!GO:0030032;lamellipodium biogenesis;0.031829803761211!GO:0004003;ATP-dependent DNA helicase activity;0.0319374771730241!GO:0051053;negative regulation of DNA metabolic process;0.0319374771730241!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0319374771730241!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0320313154687606!GO:0050178;phenylpyruvate tautomerase activity;0.0320313154687606!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0320947328097101!GO:0030911;TPR domain binding;0.032503350800116!GO:0006779;porphyrin biosynthetic process;0.0329751656472591!GO:0033014;tetrapyrrole biosynthetic process;0.0329751656472591!GO:0006778;porphyrin metabolic process;0.033214453787889!GO:0033013;tetrapyrrole metabolic process;0.033214453787889!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0344812075545022!GO:0016408;C-acyltransferase activity;0.0345557780549492!GO:0006607;NLS-bearing substrate import into nucleus;0.0349758587743666!GO:0016311;dephosphorylation;0.0350209124961803!GO:0046966;thyroid hormone receptor binding;0.0351234403864274!GO:0032259;methylation;0.0351588436412933!GO:0000152;nuclear ubiquitin ligase complex;0.0351814581969102!GO:0000096;sulfur amino acid metabolic process;0.0351932664593116!GO:0005784;translocon complex;0.0354343658454221!GO:0000070;mitotic sister chromatid segregation;0.0354343658454221!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0354343658454221!GO:0005100;Rho GTPase activator activity;0.0354343658454221!GO:0031625;ubiquitin protein ligase binding;0.0356461648919123!GO:0006417;regulation of translation;0.0357293333801213!GO:0006695;cholesterol biosynthetic process;0.0358615402963777!GO:0000726;non-recombinational repair;0.036091542495948!GO:0030041;actin filament polymerization;0.0361262681018265!GO:0065009;regulation of a molecular function;0.036490187123254!GO:0008243;plasminogen activator activity;0.036780248499022!GO:0006355;regulation of transcription, DNA-dependent;0.036826491518335!GO:0031970;organelle envelope lumen;0.0369299256698069!GO:0004518;nuclease activity;0.0371381452755843!GO:0006354;RNA elongation;0.0376731857850707!GO:0017134;fibroblast growth factor binding;0.0379373124172971!GO:0035267;NuA4 histone acetyltransferase complex;0.037981404086789!GO:0004177;aminopeptidase activity;0.0381916793420785!GO:0004721;phosphoprotein phosphatase activity;0.0385991265963529!GO:0006984;ER-nuclear signaling pathway;0.0394206799779517!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0395504564288185!GO:0006007;glucose catabolic process;0.0404733868227063!GO:0046822;regulation of nucleocytoplasmic transport;0.0404733868227063!GO:0035035;histone acetyltransferase binding;0.0404733868227063!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0410561417571361!GO:0000118;histone deacetylase complex;0.0412133550994446!GO:0019206;nucleoside kinase activity;0.0412316858042449!GO:0030984;kininogen binding;0.0413268308216506!GO:0004213;cathepsin B activity;0.0413268308216506!GO:0030031;cell projection biogenesis;0.0419980270748747!GO:0030496;midbody;0.0421232713305497!GO:0016407;acetyltransferase activity;0.0424266192464828!GO:0019752;carboxylic acid metabolic process;0.0424266192464828!GO:0000819;sister chromatid segregation;0.0424519123709!GO:0033673;negative regulation of kinase activity;0.0428014086896753!GO:0006469;negative regulation of protein kinase activity;0.0428014086896753!GO:0031123;RNA 3'-end processing;0.0432892819147397!GO:0032153;cell division site;0.0434341092394352!GO:0032155;cell division site part;0.0434341092394352!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0434895953026474!GO:0006082;organic acid metabolic process;0.0451743258845205!GO:0044438;microbody part;0.0458289530979803!GO:0044439;peroxisomal part;0.0458289530979803!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0470625338598019!GO:0030100;regulation of endocytosis;0.0477966685032691!GO:0006520;amino acid metabolic process;0.0478586216648429!GO:0022406;membrane docking;0.0487239593285982!GO:0048278;vesicle docking;0.0487239593285982!GO:0033559;unsaturated fatty acid metabolic process;0.0488077445005051!GO:0006636;unsaturated fatty acid biosynthetic process;0.0488077445005051!GO:0006406;mRNA export from nucleus;0.0491038614785745!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0491894055427101 | |||
|sample_id=10726 | |sample_id=10726 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=unclassifiable | |sample_tissue=unclassifiable | ||
|top_motifs=TFDP1:1.500209646;XCPE1{core}:1.49718077467;SP1:1.24770658547;TLX1..3_NFIC{dimer}:1.1619344578;GFI1:1.08473858341;NFY{A,B,C}:1.02401609878;PATZ1:1.00821904393;E2F1..5:0.930689129154;TFAP2B:0.897710859837;FOX{I1,J2}:0.885279610276;RBPJ:0.876520027886;PRRX1,2:0.774730946465;NRF1:0.763146078333;EN1,2:0.758990460004;STAT1,3:0.708478620503;EGR1..3:0.698379385194;BREu{core}:0.673608685485;HIC1:0.654808210263;PBX1:0.628971108111;RFX1:0.584774050275;RXR{A,B,G}:0.558296336632;CDX1,2,4:0.558183422172;MED-1{core}:0.541398239642;HOX{A6,A7,B6,B7}:0.530338165149;bHLH_family:0.524404284646;PAX8:0.506613945595;HOX{A5,B5}:0.468305422131;ZNF143:0.462005758018;PAX6:0.461650748065;IRF1,2:0.455220673776;ELK1,4_GABP{A,B1}:0.45502261028;PPARG:0.419557163004;PAX1,9:0.395916455986;ZFP161:0.383758896621;RORA:0.374042833553;HES1:0.371661236771;NKX2-3_NKX2-5:0.369391822725;SOX17:0.364894763895;PAX5:0.363418217595;MTE{core}:0.347298925058;GTF2A1,2:0.340852811803;FOX{D1,D2}:0.310108377612;CDC5L:0.295523192121;TEF:0.274037757262;TFAP2{A,C}:0.253880294874;MYBL2:0.239519181599;IKZF2:0.224478047202;SOX{8,9,10}:0.21810645071;ARID5B:0.186322219504;FOXQ1:0.172422822453;MYB:0.164122792692;HSF1,2:0.156904654978;YY1:0.136395802029;POU6F1:0.127738698027;MAZ:0.120051481975;NFIX:0.109860200097;ADNP_IRX_SIX_ZHX:0.0958028586955;DBP:0.0952652606431;ZIC1..3:0.0891860578316;ZBTB6:0.0855387833056;MTF1:0.0805692731945;ZNF423:0.0776473296582;IRF7:0.0679046621002;XBP1:0.0589545011353;ATF4:0.0474919590463;GZF1:0.0460567575404;HOX{A4,D4}:0.0438459328565;FOXA2:0.0211721089669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.00748304116042;STAT2,4,6:0.00187998783473;HNF4A_NR2F1,2:-0.000436405410227;FOXL1:-0.0117198810429;BACH2:-0.0157863368341;NFE2:-0.0231095215719;TEAD1:-0.031878454722;AHR_ARNT_ARNT2:-0.0367582272544;ONECUT1,2:-0.0441563402412;HLF:-0.050388949405;MZF1:-0.0529859593672;NFATC1..3:-0.0566699800749;CUX2:-0.0568091727962;PITX1..3:-0.0710730235992;GATA4:-0.0868464763941;SOX5:-0.0870796042102;TOPORS:-0.08801019065;ELF1,2,4:-0.0955671413874;IKZF1:-0.101373215083;RREB1:-0.106269229796;HNF1A:-0.125065165048;GTF2I:-0.134665990832;UFEwm:-0.140156267138;TFCP2:-0.140496693019;NR3C1:-0.144304562769;FOX{F1,F2,J1}:-0.147102934059;FOXD3:-0.157141815639;LEF1_TCF7_TCF7L1,2:-0.157241127327;SOX2:-0.160909033548;GCM1,2:-0.181586127885;TBP:-0.184294151966;NFKB1_REL_RELA:-0.18980170017;EBF1:-0.194236593888;NR5A1,2:-0.218791412532;NKX6-1,2:-0.239555456677;OCT4_SOX2{dimer}:-0.244917326938;FOXP1:-0.245291676217;POU5F1:-0.253020059293;REST:-0.253052000366;FOS_FOS{B,L1}_JUN{B,D}:-0.261117738304;POU1F1:-0.27756920459;FOXO1,3,4:-0.279823137873;PRDM1:-0.281127303905;PAX3,7:-0.28142724543;SRF:-0.28157236105;FOXM1:-0.285457391837;ZNF148:-0.292089375065;GATA6:-0.305878557243;ETS1,2:-0.306470603347;HIF1A:-0.312125836891;NFE2L2:-0.338423874367;NFIL3:-0.340215864662;GFI1B:-0.347824737322;ESR1:-0.347844824044;LHX3,4:-0.350542757068;TP53:-0.356904574262;CEBPA,B_DDIT3:-0.360259121875;MEF2{A,B,C,D}:-0.364999582967;BPTF:-0.36996580869;SPIB:-0.37046862817;CRX:-0.380609834112;PDX1:-0.385244141935;RUNX1..3:-0.385463679156;EVI1:-0.394401029622;FOSL2:-0.427094983647;ATF5_CREB3:-0.435685498644;SPI1:-0.443026766121;CREB1:-0.444401533698;AIRE:-0.446851545501;MYFfamily:-0.451124942194;POU2F1..3:-0.462163126373;STAT5{A,B}:-0.467491795805;NR6A1:-0.47312808096;ALX4:-0.482632564861;NKX3-1:-0.493402937392;NANOG:-0.501339632044;PAX4:-0.501574822573;RXRA_VDR{dimer}:-0.519838769736;HAND1,2:-0.541052250631;HMGA1,2:-0.541338811395;GLI1..3:-0.541744049144;T:-0.542989362266;RFX2..5_RFXANK_RFXAP:-0.544678700095;MYOD1:-0.553089032147;ZBTB16:-0.556313988148;TFAP4:-0.55778940209;NKX2-1,4:-0.566630180937;SNAI1..3:-0.580509012366;NHLH1,2:-0.585093688838;KLF4:-0.585446038529;NFE2L1:-0.591171574908;SREBF1,2:-0.600098595435;AR:-0.602034593511;ESRRA:-0.619809893707;TBX4,5:-0.623860209351;DMAP1_NCOR{1,2}_SMARC:-0.642959637263;ATF6:-0.653581454722;JUN:-0.653954314855;TLX2:-0.67467265102;FOXP3:-0.681367292113;FOXN1:-0.699889608453;ALX1:-0.70160223848;TGIF1:-0.709687109222;ZEB1:-0.715315080574;LMO2:-0.78426734482;HBP1_HMGB_SSRP1_UBTF:-0.819694195982;POU3F1..4:-0.845602447167;ZNF238:-0.846316039506;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849270262662;TAL1_TCF{3,4,12}:-0.859959658006;HOXA9_MEIS1:-0.863412365611;NANOG{mouse}:-0.898830968139;VSX1,2:-0.935646433504;ATF2:-0.957023674605;ZNF384:-0.960571823661;SPZ1:-0.984276711525;PAX2:-1.03096608193;SMAD1..7,9:-1.07553596676;NKX2-2,8:-1.09872098322;HMX1:-1.11057608874;EP300:-1.19024890231;NKX3-2:-1.20925738753;NR1H4:-1.27985677035;MAFB:-1.54522531583 | |top_motifs=TFDP1:1.500209646;XCPE1{core}:1.49718077467;SP1:1.24770658547;TLX1..3_NFIC{dimer}:1.1619344578;GFI1:1.08473858341;NFY{A,B,C}:1.02401609878;PATZ1:1.00821904393;E2F1..5:0.930689129154;TFAP2B:0.897710859837;FOX{I1,J2}:0.885279610276;RBPJ:0.876520027886;PRRX1,2:0.774730946465;NRF1:0.763146078333;EN1,2:0.758990460004;STAT1,3:0.708478620503;EGR1..3:0.698379385194;BREu{core}:0.673608685485;HIC1:0.654808210263;PBX1:0.628971108111;RFX1:0.584774050275;RXR{A,B,G}:0.558296336632;CDX1,2,4:0.558183422172;MED-1{core}:0.541398239642;HOX{A6,A7,B6,B7}:0.530338165149;bHLH_family:0.524404284646;PAX8:0.506613945595;HOX{A5,B5}:0.468305422131;ZNF143:0.462005758018;PAX6:0.461650748065;IRF1,2:0.455220673776;ELK1,4_GABP{A,B1}:0.45502261028;PPARG:0.419557163004;PAX1,9:0.395916455986;ZFP161:0.383758896621;RORA:0.374042833553;HES1:0.371661236771;NKX2-3_NKX2-5:0.369391822725;SOX17:0.364894763895;PAX5:0.363418217595;MTE{core}:0.347298925058;GTF2A1,2:0.340852811803;FOX{D1,D2}:0.310108377612;CDC5L:0.295523192121;TEF:0.274037757262;TFAP2{A,C}:0.253880294874;MYBL2:0.239519181599;IKZF2:0.224478047202;SOX{8,9,10}:0.21810645071;ARID5B:0.186322219504;FOXQ1:0.172422822453;MYB:0.164122792692;HSF1,2:0.156904654978;YY1:0.136395802029;POU6F1:0.127738698027;MAZ:0.120051481975;NFIX:0.109860200097;ADNP_IRX_SIX_ZHX:0.0958028586955;DBP:0.0952652606431;ZIC1..3:0.0891860578316;ZBTB6:0.0855387833056;MTF1:0.0805692731945;ZNF423:0.0776473296582;IRF7:0.0679046621002;XBP1:0.0589545011353;ATF4:0.0474919590463;GZF1:0.0460567575404;HOX{A4,D4}:0.0438459328565;FOXA2:0.0211721089669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.00748304116042;STAT2,4,6:0.00187998783473;HNF4A_NR2F1,2:-0.000436405410227;FOXL1:-0.0117198810429;BACH2:-0.0157863368341;NFE2:-0.0231095215719;TEAD1:-0.031878454722;AHR_ARNT_ARNT2:-0.0367582272544;ONECUT1,2:-0.0441563402412;HLF:-0.050388949405;MZF1:-0.0529859593672;NFATC1..3:-0.0566699800749;CUX2:-0.0568091727962;PITX1..3:-0.0710730235992;GATA4:-0.0868464763941;SOX5:-0.0870796042102;TOPORS:-0.08801019065;ELF1,2,4:-0.0955671413874;IKZF1:-0.101373215083;RREB1:-0.106269229796;HNF1A:-0.125065165048;GTF2I:-0.134665990832;UFEwm:-0.140156267138;TFCP2:-0.140496693019;NR3C1:-0.144304562769;FOX{F1,F2,J1}:-0.147102934059;FOXD3:-0.157141815639;LEF1_TCF7_TCF7L1,2:-0.157241127327;SOX2:-0.160909033548;GCM1,2:-0.181586127885;TBP:-0.184294151966;NFKB1_REL_RELA:-0.18980170017;EBF1:-0.194236593888;NR5A1,2:-0.218791412532;NKX6-1,2:-0.239555456677;OCT4_SOX2{dimer}:-0.244917326938;FOXP1:-0.245291676217;POU5F1:-0.253020059293;REST:-0.253052000366;FOS_FOS{B,L1}_JUN{B,D}:-0.261117738304;POU1F1:-0.27756920459;FOXO1,3,4:-0.279823137873;PRDM1:-0.281127303905;PAX3,7:-0.28142724543;SRF:-0.28157236105;FOXM1:-0.285457391837;ZNF148:-0.292089375065;GATA6:-0.305878557243;ETS1,2:-0.306470603347;HIF1A:-0.312125836891;NFE2L2:-0.338423874367;NFIL3:-0.340215864662;GFI1B:-0.347824737322;ESR1:-0.347844824044;LHX3,4:-0.350542757068;TP53:-0.356904574262;CEBPA,B_DDIT3:-0.360259121875;MEF2{A,B,C,D}:-0.364999582967;BPTF:-0.36996580869;SPIB:-0.37046862817;CRX:-0.380609834112;PDX1:-0.385244141935;RUNX1..3:-0.385463679156;EVI1:-0.394401029622;FOSL2:-0.427094983647;ATF5_CREB3:-0.435685498644;SPI1:-0.443026766121;CREB1:-0.444401533698;AIRE:-0.446851545501;MYFfamily:-0.451124942194;POU2F1..3:-0.462163126373;STAT5{A,B}:-0.467491795805;NR6A1:-0.47312808096;ALX4:-0.482632564861;NKX3-1:-0.493402937392;NANOG:-0.501339632044;PAX4:-0.501574822573;RXRA_VDR{dimer}:-0.519838769736;HAND1,2:-0.541052250631;HMGA1,2:-0.541338811395;GLI1..3:-0.541744049144;T:-0.542989362266;RFX2..5_RFXANK_RFXAP:-0.544678700095;MYOD1:-0.553089032147;ZBTB16:-0.556313988148;TFAP4:-0.55778940209;NKX2-1,4:-0.566630180937;SNAI1..3:-0.580509012366;NHLH1,2:-0.585093688838;KLF4:-0.585446038529;NFE2L1:-0.591171574908;SREBF1,2:-0.600098595435;AR:-0.602034593511;ESRRA:-0.619809893707;TBX4,5:-0.623860209351;DMAP1_NCOR{1,2}_SMARC:-0.642959637263;ATF6:-0.653581454722;JUN:-0.653954314855;TLX2:-0.67467265102;FOXP3:-0.681367292113;FOXN1:-0.699889608453;ALX1:-0.70160223848;TGIF1:-0.709687109222;ZEB1:-0.715315080574;LMO2:-0.78426734482;HBP1_HMGB_SSRP1_UBTF:-0.819694195982;POU3F1..4:-0.845602447167;ZNF238:-0.846316039506;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849270262662;TAL1_TCF{3,4,12}:-0.859959658006;HOXA9_MEIS1:-0.863412365611;NANOG{mouse}:-0.898830968139;VSX1,2:-0.935646433504;ATF2:-0.957023674605;ZNF384:-0.960571823661;SPZ1:-0.984276711525;PAX2:-1.03096608193;SMAD1..7,9:-1.07553596676;NKX2-2,8:-1.09872098322;HMX1:-1.11057608874;EP300:-1.19024890231;NKX3-2:-1.20925738753;NR1H4:-1.27985677035;MAFB:-1.54522531583 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10726-110A6;search_select_hide=table117:FF:10726-110A6 | |||
}} | }} | ||
Latest revision as of 15:02, 3 June 2020
| Name: | liposarcoma cell line:SW 872 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11851 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11851
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11851
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0903 |
| 10 | 10 | 0.0697 |
| 100 | 100 | 0.808 |
| 101 | 101 | 0.2 |
| 102 | 102 | 0.444 |
| 103 | 103 | 0.229 |
| 104 | 104 | 0.834 |
| 105 | 105 | 0.212 |
| 106 | 106 | 0.00792 |
| 107 | 107 | 0.275 |
| 108 | 108 | 0.467 |
| 109 | 109 | 0.628 |
| 11 | 11 | 0.172 |
| 110 | 110 | 0.329 |
| 111 | 111 | 0.655 |
| 112 | 112 | 0.102 |
| 113 | 113 | 0.689 |
| 114 | 114 | 0.14 |
| 115 | 115 | 0.729 |
| 116 | 116 | 0.586 |
| 117 | 117 | 0.501 |
| 118 | 118 | 0.32 |
| 119 | 119 | 0.066 |
| 12 | 12 | 0.955 |
| 120 | 120 | 0.972 |
| 121 | 121 | 0.555 |
| 122 | 122 | 0.789 |
| 123 | 123 | 0.154 |
| 124 | 124 | 0.0601 |
| 125 | 125 | 0.595 |
| 126 | 126 | 0.842 |
| 127 | 127 | 0.763 |
| 128 | 128 | 0.0266 |
| 129 | 129 | 0.589 |
| 13 | 13 | 0.369 |
| 130 | 130 | 0.19 |
| 131 | 131 | 0.209 |
| 132 | 132 | 0.9 |
| 133 | 133 | 0.174 |
| 134 | 134 | 0.194 |
| 135 | 135 | 0.0954 |
| 136 | 136 | 0.218 |
| 137 | 137 | 0.656 |
| 138 | 138 | 0.803 |
| 139 | 139 | 0.00156 |
| 14 | 14 | 0.472 |
| 140 | 140 | 0.0956 |
| 141 | 141 | 0.149 |
| 142 | 142 | 0.455 |
| 143 | 143 | 0.175 |
| 144 | 144 | 0.501 |
| 145 | 145 | 0.284 |
| 146 | 146 | 0.544 |
| 147 | 147 | 0.734 |
| 148 | 148 | 0.00804 |
| 149 | 149 | 0.206 |
| 15 | 15 | 0.096 |
| 150 | 150 | 0.848 |
| 151 | 151 | 0.347 |
| 152 | 152 | 0.98 |
| 153 | 153 | 0.0961 |
| 154 | 154 | 0.19 |
| 155 | 155 | 0.201 |
| 156 | 156 | 0.873 |
| 157 | 157 | 0.965 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.924 |
| 16 | 16 | 0.196 |
| 160 | 160 | 0.166 |
| 161 | 161 | 0.275 |
| 162 | 162 | 0.686 |
| 163 | 163 | 0.739 |
| 164 | 164 | 0.418 |
| 165 | 165 | 0.157 |
| 166 | 166 | 0.439 |
| 167 | 167 | 0.0568 |
| 168 | 168 | 0.238 |
| 169 | 169 | 0.0439 |
| 17 | 17 | 0.231 |
| 18 | 18 | 0.0823 |
| 19 | 19 | 0.237 |
| 2 | 2 | 0.427 |
| 20 | 20 | 0.567 |
| 21 | 21 | 0.509 |
| 22 | 22 | 0.687 |
| 23 | 23 | 0.029 |
| 24 | 24 | 0.669 |
| 25 | 25 | 0.258 |
| 26 | 26 | 0.084 |
| 27 | 27 | 0.264 |
| 28 | 28 | 0.708 |
| 29 | 29 | 0.636 |
| 3 | 3 | 0.115 |
| 30 | 30 | 0.909 |
| 31 | 31 | 0.354 |
| 32 | 32 | 0.0124 |
| 33 | 33 | 0.502 |
| 34 | 34 | 0.924 |
| 35 | 35 | 0.108 |
| 36 | 36 | 0.0918 |
| 37 | 37 | 0.193 |
| 38 | 38 | 0.365 |
| 39 | 39 | 0.531 |
| 4 | 4 | 0.75 |
| 40 | 40 | 0.62 |
| 41 | 41 | 0.3 |
| 42 | 42 | 0.422 |
| 43 | 43 | 0.1 |
| 44 | 44 | 0.27 |
| 45 | 45 | 0.777 |
| 46 | 46 | 0.0413 |
| 47 | 47 | 0.253 |
| 48 | 48 | 0.407 |
| 49 | 49 | 0.109 |
| 5 | 5 | 0.0858 |
| 50 | 50 | 0.63 |
| 51 | 51 | 0.43 |
| 52 | 52 | 0.116 |
| 53 | 53 | 0.398 |
| 54 | 54 | 0.554 |
| 55 | 55 | 0.406 |
| 56 | 56 | 0.85 |
| 57 | 57 | 0.151 |
| 58 | 58 | 0.11 |
| 59 | 59 | 0.139 |
| 6 | 6 | 0.684 |
| 60 | 60 | 0.0275 |
| 61 | 61 | 0.572 |
| 62 | 62 | 0.0259 |
| 63 | 63 | 0.416 |
| 64 | 64 | 0.259 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.0752 |
| 67 | 67 | 0.872 |
| 68 | 68 | 0.866 |
| 69 | 69 | 0.9 |
| 7 | 7 | 0.189 |
| 70 | 70 | 0.00457 |
| 71 | 71 | 0.106 |
| 72 | 72 | 0.407 |
| 73 | 73 | 0.781 |
| 74 | 74 | 0.0118 |
| 75 | 75 | 0.119 |
| 76 | 76 | 0.816 |
| 77 | 77 | 0.329 |
| 78 | 78 | 0.173 |
| 79 | 79 | 0.0552 |
| 8 | 8 | 0.497 |
| 80 | 80 | 0.401 |
| 81 | 81 | 0.148 |
| 82 | 82 | 0.00577 |
| 83 | 83 | 0.627 |
| 84 | 84 | 0.692 |
| 85 | 85 | 0.0171 |
| 86 | 86 | 0.345 |
| 87 | 87 | 0.262 |
| 88 | 88 | 0.587 |
| 89 | 89 | 0.0575 |
| 9 | 9 | 0.41 |
| 90 | 90 | 0.0587 |
| 91 | 91 | 0.11 |
| 92 | 92 | 0.0437 |
| 93 | 93 | 0.194 |
| 94 | 94 | 0.00597 |
| 95 | 95 | 0.862 |
| 96 | 96 | 0.0419 |
| 97 | 97 | 0.527 |
| 98 | 98 | 0.23 |
| 99 | 99 | 0.57 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11851
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103743 SW-872 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0103744 (liposarcoma cell line sample)
0103743 (SW-872 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
