FF:10785-110H2: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	choriocarcinoma cell line:SCH
Species:	Human (Homo sapiens)
Library ID:	CNhs11875
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	male
age	46
cell type	trophoblast cell
cell line	SCH
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005669

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11875		CAGE		DRX007850		DRR008722

Accession ID Hg19

Library id		BAM		CTSS
CNhs11875		DRZ000147		DRZ001532

Accession ID Hg38

Library id		BAM		CTSS
CNhs11875		DRZ011497		DRZ012882

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.355
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.309
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.018
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0.157
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.069
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.105
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.157
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.501
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0797
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.164
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0.218
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.261
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0.246
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0.801
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11875

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00211
MA0003.1	MA0003.1	0.379
MA0004.1	MA0004.1	0.135
MA0006.1	MA0006.1	0.822
MA0007.1	MA0007.1	0.769
MA0009.1	MA0009.1	0.98
MA0014.1	MA0014.1	0.136
MA0017.1	MA0017.1	0.148
MA0018.2	MA0018.2	0.477
MA0019.1	MA0019.1	0.286
MA0024.1	MA0024.1	0.0567
MA0025.1	MA0025.1	0.985
MA0027.1	MA0027.1	0.729
MA0028.1	MA0028.1	0.0109
MA0029.1	MA0029.1	0.14
MA0030.1	MA0030.1	0.552
MA0031.1	MA0031.1	0.376
MA0035.2	MA0035.2	3.17013e-6
MA0038.1	MA0038.1	0.0163
MA0039.2	MA0039.2	3.78123e-4
MA0040.1	MA0040.1	0.576
MA0041.1	MA0041.1	0.181
MA0042.1	MA0042.1	0.381
MA0043.1	MA0043.1	0.453
MA0046.1	MA0046.1	0.769
MA0047.2	MA0047.2	0.646
MA0048.1	MA0048.1	0.0711
MA0050.1	MA0050.1	7.04488e-6
MA0051.1	MA0051.1	5.88796e-4
MA0052.1	MA0052.1	0.0246
MA0055.1	MA0055.1	7.94296e-5
MA0057.1	MA0057.1	0.448
MA0058.1	MA0058.1	0.0809
MA0059.1	MA0059.1	0.137
MA0060.1	MA0060.1	1.45373e-7
MA0061.1	MA0061.1	0.00589
MA0062.2	MA0062.2	0.129
MA0065.2	MA0065.2	6.05703e-4
MA0066.1	MA0066.1	0.725
MA0067.1	MA0067.1	0.279
MA0068.1	MA0068.1	0.467
MA0069.1	MA0069.1	0.503
MA0070.1	MA0070.1	0.835
MA0071.1	MA0071.1	0.259
MA0072.1	MA0072.1	0.721
MA0073.1	MA0073.1	0.971
MA0074.1	MA0074.1	0.73
MA0076.1	MA0076.1	0.0182
MA0077.1	MA0077.1	0.569
MA0078.1	MA0078.1	0.142
MA0079.2	MA0079.2	0.965
MA0080.2	MA0080.2	1.60847e-8
MA0081.1	MA0081.1	0.00545
MA0083.1	MA0083.1	4.06458e-4
MA0084.1	MA0084.1	0.0469
MA0087.1	MA0087.1	0.231
MA0088.1	MA0088.1	0.0695
MA0090.1	MA0090.1	2.62396e-5
MA0091.1	MA0091.1	0.0211
MA0092.1	MA0092.1	0.306
MA0093.1	MA0093.1	0.125
MA0099.2	MA0099.2	2.59725e-8
MA0100.1	MA0100.1	0.798
MA0101.1	MA0101.1	0.0195
MA0102.2	MA0102.2	0.412
MA0103.1	MA0103.1	4.93412e-6
MA0104.2	MA0104.2	0.158
MA0105.1	MA0105.1	0.172
MA0106.1	MA0106.1	0.563
MA0107.1	MA0107.1	4.7827e-4
MA0108.2	MA0108.2	0.0179
MA0111.1	MA0111.1	0.974
MA0112.2	MA0112.2	0.759
MA0113.1	MA0113.1	0.667
MA0114.1	MA0114.1	7.64128e-4
MA0115.1	MA0115.1	0.0872
MA0116.1	MA0116.1	0.434
MA0117.1	MA0117.1	0.935
MA0119.1	MA0119.1	0.075
MA0122.1	MA0122.1	0.605
MA0124.1	MA0124.1	0.825
MA0125.1	MA0125.1	0.924
MA0131.1	MA0131.1	0.662
MA0135.1	MA0135.1	0.37
MA0136.1	MA0136.1	3.28667e-7
MA0137.2	MA0137.2	0.24
MA0138.2	MA0138.2	0.0922
MA0139.1	MA0139.1	0.384
MA0140.1	MA0140.1	0.00102
MA0141.1	MA0141.1	0.635
MA0142.1	MA0142.1	0.624
MA0143.1	MA0143.1	0.288
MA0144.1	MA0144.1	0.319
MA0145.1	MA0145.1	0.771
MA0146.1	MA0146.1	0.0719
MA0147.1	MA0147.1	0.12
MA0148.1	MA0148.1	0.982
MA0149.1	MA0149.1	0.564
MA0150.1	MA0150.1	0.165
MA0152.1	MA0152.1	0.381
MA0153.1	MA0153.1	0.219
MA0154.1	MA0154.1	0.98
MA0155.1	MA0155.1	0.983
MA0156.1	MA0156.1	0.0041
MA0157.1	MA0157.1	0.696
MA0159.1	MA0159.1	0.592
MA0160.1	MA0160.1	0.798
MA0162.1	MA0162.1	0.526
MA0163.1	MA0163.1	0.905
MA0164.1	MA0164.1	0.359
MA0258.1	MA0258.1	0.62
MA0259.1	MA0259.1	0.065

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11875

Novel motif	Logo	P-value
1	1	0.63
10	10	0.703
100	100	0.181
101	101	0.757
102	102	0.65
103	103	0.212
104	104	0.193
105	105	0.939
106	106	0.231
107	107	0.237
108	108	0.856
109	109	0.243
11	11	0.829
110	110	0.159
111	111	0.817
112	112	0.486
113	113	0.0322
114	114	0.559
115	115	0.347
116	116	0.623
117	117	0.0393
118	118	0.229
119	119	0.553
12	12	0.698
120	120	0.951
121	121	0.741
122	122	0.565
123	123	0.255
124	124	0.103
125	125	0.593
126	126	0.463
127	127	0.611
128	128	0.18
129	129	0.698
13	13	0.00197
130	130	0.358
131	131	0.298
132	132	0.386
133	133	0.00512
134	134	0.878
135	135	0.00564
136	136	0.0149
137	137	0.172
138	138	0.588
139	139	0.444
14	14	0.924
140	140	0.599
141	141	0.123
142	142	0.459
143	143	0.0466
144	144	0.162
145	145	0.902
146	146	0.654
147	147	0.0671
148	148	0.0186
149	149	0.717
15	15	0.796
150	150	0.946
151	151	0.241
152	152	0.446
153	153	0.94
154	154	0.366
155	155	0.993
156	156	0.823
157	157	0.775
158	158	0.4
159	159	0.349
16	16	0.882
160	160	0.579
161	161	0.693
162	162	0.342
163	163	0.54
164	164	0.211
165	165	0.295
166	166	0.0314
167	167	0.851
168	168	0.156
169	169	0.511
17	17	0.421
18	18	0.346
19	19	0.705
2	2	0.485
20	20	0.139
21	21	0.665
22	22	0.658
23	23	0.159
24	24	0.481
25	25	0.812
26	26	0.391
27	27	0.256
28	28	0.786
29	29	0.441
3	3	0.944
30	30	0.925
31	31	0.551
32	32	0.194
33	33	0.343
34	34	0.785
35	35	0.389
36	36	0.298
37	37	0.714
38	38	0.786
39	39	0.277
4	4	0.881
40	40	0.0338
41	41	0.0187
42	42	0.795
43	43	0.777
44	44	0.738
45	45	0.529
46	46	0.527
47	47	0.536
48	48	0.698
49	49	0.818
5	5	0.246
50	50	0.117
51	51	0.655
52	52	0.743
53	53	0.813
54	54	0.652
55	55	0.583
56	56	0.825
57	57	0.254
58	58	0.615
59	59	0.505
6	6	0.487
60	60	0.72
61	61	0.44
62	62	0.489
63	63	0.824
64	64	0.871
65	65	0.618
66	66	0.0138
67	67	0.957
68	68	0.339
69	69	0.633
7	7	0.152
70	70	0.665
71	71	0.381
72	72	0.715
73	73	0.528
74	74	0.0598
75	75	0.13
76	76	0.159
77	77	0.839
78	78	0.0109
79	79	0.233
8	8	0.201
80	80	0.13
81	81	0.305
82	82	0.735
83	83	0.633
84	84	0.293
85	85	0.0508
86	86	0.896
87	87	0.13
88	88	0.897
89	89	0.211
9	9	0.11
90	90	0.962
91	91	0.0754
92	92	0.19
93	93	0.342
94	94	0.864
95	95	0.0065
96	96	0.819
97	97	0.847
98	98	0.866
99	99	0.689

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11875

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101575 choriocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005669
+|accession_numbers=CAGE;DRX007850;DRR008722;DRZ000147;DRZ001532;DRZ011497;DRZ012882
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.57!367.34!PEG3;;chr10:8096631..8096660,+!p1@GATA3!2.31!242.50!GATA3;;chr20:55204351..55204377,+!p1@TFAP2C!2.27!233.05!TFAP2C;;chrX:70319128..70319142,+!p3@FOXO4!2.15!141.24!FOXO4;;chr17:45928521..45928539,-!p1@SP6!2.07!115.93!SP6;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.41!ELF3;;chrX:131547625..131547644,-!p4@MBNL3!1.89!76.49!MBNL3;;chr10:8096772..8096787,+!p2@GATA3!1.87!86.37!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.82!65.51!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.79!60.30!SOX15;;chr5:2751762..2751784,-!p1@IRX2!1.77!57.26!IRX2;;chr17:48072574..48072597,-!p1@DLX3!1.71!50.41!DLX3;;chr19:33793430..33793447,-!p1@CEBPA!1.67!183.18!CEBPA;;chr10:8095593..8095625,+!p3@GATA3!1.66!52.48!GATA3;;chr5:174151553..174151610,+!p1@MSX2!1.64!69.32!MSX2;;chr2:10091815..10091864,+!p1@GRHL1!1.63!54.98!GRHL1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.63!42.05!TFCP2L1;;chr18:19749386..19749404,+!p2@GATA6!1.62!57.91!GATA6;;chr12:19556998..19557013,+!p6@AEBP2!1.61!40.09!AEBP2;;chr4:188916918..188916942,+!p1@ZFP42!1.59!37.48!ZFP42;;chr20:31350184..31350200,+!p1@DNMT3B!1.56!72.58!DNMT3B;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.98!PPARG;;chr12:54785054..54785072,-!p4@ZNF385A!1.55!38.90!ZNF385A;;chr9:127358120..127358170,-!p3@NR6A1!1.55!34.88!NR6A1;;chr5:174151612..174151633,+!p2@MSX2!1.55!34.77!MSX2;;chr1:201979703..201979721,+!p2@ELF3!1.51!31.29!ELF3;;chr15:96869511..96869525,+!p16@NR2F2!1.48!32.05!NR2F2;;chr8:102504651..102504683,+!p1@GRHL2!1.47!28.79!GRHL2;;chr3:128206762..128206781,-!p2@GATA2!1.46!166.12!GATA2;;chr2:46524897..46524911,+!p2@EPAS1!1.46!75.94!EPAS1;;chr18:19749353..19749367,+!p4@GATA6!1.43!26.08!GATA6;;chr6:10419768..10419819,-!p6@TFAP2A!1.42!25.10!TFAP2A;;chrX:70316005..70316034,+!p2@FOXO4!1.40!43.13!FOXO4;;chrX:131547596..131547609,-!p10@MBNL3!1.36!21.73!MBNL3;;chr5:2751785..2751808,-!p2@IRX2!1.36!21.73!IRX2;;chr20:50159198..50159299,-!p1@NFATC2!1.33!29.23!NFATC2;;chr12:19556960..19556982,+!p10@AEBP2!1.32!19.77!AEBP2;;chr13:73633131..73633149,+!p1@KLF5!1.31!199.26!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.31!21.62!IRF6;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.34!ZNF750;;chr18:19749541..19749557,+!p1@GATA6!1.30!58.02!GATA6;;chr10:70320074..70320106,+!p1@TET1!1.30!37.37!TET1;;chr19:926001..926046,+!p1@ARID3A!1.25!57.47!ARID3A;;chr3:12329358..12329393,+!p3@PPARG!1.23!39.22!PPARG;;chr1:935398..935465,-!p2@HES4!1.23!32.70!HES4;;chr12:54785074..54785122,-!p2@ZNF385A!1.23!24.34!ZNF385A;;chrX:70316101..70316112,+!p5@FOXO4!1.23!16.08!FOXO4;;chr7:26191809..26191890,+!p1@NFE2L3!1.22!75.51!NFE2L3;;chr4:299227..299272,-!p1@ZNF732!1.19!14.34!ZNF732;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.02!KDM5D;;chrX:70316072..70316085,+!p4@FOXO4!1.18!14.02!FOXO4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.25!TFAP2A;;chr19:926055..926068,+!p2@ARID3A!1.13!27.16!ARID3A;;chr19:12075844..12075880,+!p3@ZNF763!1.13!21.40!ZNF763;;chr6:10419824..10419840,-!p9@TFAP2A!1.12!12.28!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!104.19!PPP1R13L;;chr12:3068544..3068597,+!p1@TEAD4!1.10!69.64!TEAD4;;chr9:2015335..2015370,+!p1@SMARCA2!1.09!137.87!SMARCA2;;chr9:2015306..2015323,+!p3@SMARCA2!1.09!29.77!SMARCA2;;chr3:12329397..12329433,+!p2@PPARG!1.09!25.97!PPARG;;chr1:42801540..42801562,-!p4@FOXJ3!1.09!11.30!FOXJ3;;chr7:96654133..96654150,-!p1@DLX5!1.09!11.30!DLX5;;chr20:50418972..50419029,-!p1@SALL4!1.08!11.08!SALL4;;chr19:22235279..22235301,+!p1@ZNF257!1.07!20.64!ZNF257;;chr17:48046543..48046575,+!p2@DLX4!1.07!10.76!DLX4;;chr20:50792507..50792525,-!p12@ZFP64!1.07!10.76!ZFP64;;chr11:65554528..65554546,+!p1@OVOL1!1.07!10.76!OVOL1;;chr19:12163769..12163798,-!p1@ZNF878!1.06!13.58!ZNF878;;chr3:128207349..128207386,-!p3@GATA2!1.06!10.54!GATA2;;chr7:96635178..96635181,+!p1@DLX6!1.06!10.54!DLX6;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.05!10.10!MEF2B;;chr2:16080659..16080685,+!p1@MYCN!1.05!10.10!MYCN;;chr10:8097321..8097348,+!p4@GATA3!1.04!10.00!GATA3;;chr20:50418128..50418147,-!p2@SALL4!1.04!9.89!SALL4;;chr3:141747441..141747452,-!p4@TFDP2!1.03!13.80!TFDP2;;chr11:34535297..34535317,-!p1@ELF5!1.02!9.45!ELF5;;chr12:3068634..3068656,+!p5@TEAD4!1.01!9.34!TEAD4;;chr5:1887070..1887114,-!p1@IRX4!1.00!9.02!IRX4;;chr2:74229812..74229867,+!p1@TET3!0.98!21.95!TET3;;chr10:114710098..114710130,+!p2@TCF7L2!0.97!64.10!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.97!10.32!TFAP2A;;chr19:22605097..22605121,-!p2@ZNF98!0.97!8.37!ZNF98;;chr11:12696102..12696113,+!p5@TEAD1!0.97!8.26!TEAD1;;chr19:22817119..22817145,+!p1@ZNF492!0.95!13.58!ZNF492;;chr1:41827095..41827155,+!p1@FOXO6!0.95!10.76!FOXO6;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.21!TEAD1;;chr15:41913690..41913753,+!p2@MGA!0.93!18.69!MGA;;chr14:29235961..29236008,+!p1@FOXG1!0.93!7.61!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!0.93!7.50!ZNF385A;;chr2:88752207..88752218,-!p1@FOXI3!0.92!7.28!FOXI3;;chr6:28048343..28048354,+!p1@ZNF165!0.90!6.95!ZNF165;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!462.73!TSC22D1;;chr3:141747459..141747475,-!p1@TFDP2!0.89!58.67!TFDP2;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.80!ZNF90;;chr10:35484053..35484076,+!p1@CREM!0.89!17.38!CREM;;chr2:25475120..25475176,-!p2@DNMT3A!0.89!9.34!DNMT3A;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.74!GATA3;;chr6:53013620..53013644,-!p1@GCM1!0.89!6.74!GCM1;;chrX:128657457..128657475,-!p1@SMARCA1!0.87!77.57!SMARCA1;;chr11:65554563..65554576,+!p2@OVOL1!0.87!6.41!OVOL1;;chr7:97840743..97840786,+!p1@BHLHA15!0.87!6.41!BHLHA15;;chr7:96634878..96634900,+!p2@DLX6!0.86!6.30!DLX6;;chr20:18038521..18038571,-!p1@OVOL2!0.85!6.08!OVOL2;;chr12:54694653..54694672,-!p2@NFE2!0.85!6.08!NFE2;;chr2:46524878..46524891,+!p3@EPAS1!0.84!10.86!EPAS1;;chr16:73082004..73082033,-!p5@ZFHX3!0.84!9.78!ZFHX3;;chrX:56258844..56258882,+!p1@KLF8!0.84!8.47!KLF8;;chr19:11998584..11998649,+!p1@ZNF69!0.83!27.49!ZNF69;;chr1:41174988..41175047,+!p4@NFYC!0.83!16.19!NFYC;;chr6:41703952..41703994,-!p4@TFEB!0.83!5.76!TFEB;;chr19:2867325..2867348,+!p1@ZNF556!0.83!5.76!ZNF556;;chr19:11959532..11959593,+!p1@ZNF439!0.82!23.14!ZNF439;;chr8:102504979..102505010,+!p2@GRHL2!0.82!5.65!GRHL2;;chr10:8097295..8097320,+!p6@GATA3!0.82!5.54!GATA3;;chr13:79177703..79177729,-!p2@POU4F1!0.82!5.54!POU4F1;;chr17:46806067..46806097,-!p1@HOXB13!0.81!5.43!HOXB13;;chr2:42795745..42795824,+!p1@MTA3!0.80!53.45!MTA3;;chr19:11925071..11925113,+!p1@ZNF440!0.80!41.50!ZNF440;;chr3:137483141..137483162,+!p1@SOX14!0.80!5.32!SOX14;;chr1:45805872..45805900,+!p2@TOE1!0.79!13.36!TOE1;;chr3:24536253..24536328,-!p1@THRB!0.79!10.32!THRB;;chr2:10091922..10091935,+!p3@GRHL1!0.79!5.22!GRHL1;;chr17:48045917..48045977,+!p1@DLX4!0.79!5.11!DLX4;;chr19:22605136..22605154,-!p1@ZNF98!0.79!5.11!ZNF98;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.78!11.63!SOHLH2;;chr8:102504690..102504704,+!p3@GRHL2!0.78!5.00!GRHL2;;chr20:42295745..42295765,+!p1@MYBL2!0.77!88.00!MYBL2;;chr3:126076242..126076257,-!p1@KLF15!0.77!6.19!KLF15;;chr19:22034809..22034878,-!p2@ZNF43!0.76!18.36!ZNF43;;chr6:126240380..126240430,+!p2@NCOA7!0.76!13.25!NCOA7;;chr15:74833584..74833626,+!p1@ARID3B!0.76!11.73!ARID3B;;chr8:11561684..11561751,+!p1@GATA4!0.76!4.78!GATA4;;chr8:37553292..37553317,+!p1@ZNF703!0.75!120.71!ZNF703;;chr19:33865009..33865090,+!p3@CEBPG!0.75!6.41!CEBPG;;chr18:45663490..45663528,-!p2@ZBTB7C!0.75!4.67!ZBTB7C;;chr10:70320041..70320065,+!p2@TET1!0.75!4.67!TET1;;chr13:28543431..28543487,-!p1@CDX2!0.75!4.67!CDX2;;chr2:176987441..176987454,+!p1@HOXD9!0.75!4.67!HOXD9;;chr20:50419055..50419066,-!p3@SALL4!0.75!4.67!SALL4;;chr2:25475094..25475112,-!p3@DNMT3A!0.75!4.56!DNMT3A;;chr3:24536231..24536249,-!p4@THRB!0.74!4.45!THRB;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.45!ZFY;;chr6:34204672..34204692,+!p1@HMGA1!0.73!556.17!HMGA1;;chr2:42795651..42795676,+!p3@MTA3!0.73!12.71!MTA3;;chr17:41739283..41739297,-!p1@MEOX1!0.73!4.35!MEOX1;;chr17:48049323..48049330,+!p6@DLX4!0.72!4.24!DLX4;;chr5:1883090..1883121,-!p6@IRX4!0.72!4.24!IRX4;;chr19:53360870..53360873,-!p1@ZNF468!0.71!16.95!ZNF468;;chr3:126076264..126076305,-!p2@KLF15!0.71!5.98!KLF15;;chr7:96634908..96634923,+!p4@DLX6!0.71!4.13!DLX6;;chr12:19556947..19556956,+!p14@AEBP2!0.71!4.13!AEBP2;;chr1:204042233..204042249,+!p1@SOX13!0.70!28.47!SOX13;;chr19:11849700..11849803,-!p1@ZNF823!0.70!21.62!ZNF823;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.00!NCOA7;;chr13:73636252..73636307,+!p2@KLF5!0.70!4.78!KLF5;;chr12:54393880..54393962,+!p1@HOXC9!0.70!4.02!HOXC9;;chr19:22966893..22966924,-!p2@ZNF99!0.70!4.02!ZNF99;;chr19:58326246..58326262,-!p2@ZNF552!0.68!9.89!ZNF552;;chr19:12203100..12203132,+!p1@ZNF788!0.68!8.37!ZNF788;;chr20:45142154..45142227,-!p1@ZNF334!0.68!8.26!ZNF334;;chr11:31832658..31832681,-!p1@PAX6!0.68!3.80!PAX6;;chr10:114709999..114710031,+!p1@TCF7L2!0.67!100.50!TCF7L2;;chrX:56258811..56258838,+!p2@KLF8!0.67!5.11!KLF8;;chr19:48774586..48774670,+!p1@ZNF114!0.67!4.78!ZNF114;;chr5:1883024..1883046,-!p5@IRX4!0.67!3.69!IRX4;;chr19:11998716..11998727,+!p3@ZNF69!0.67!3.69!ZNF69;;chr6:168227552..168227609,+!p1@MLLT4!0.66!34.33!MLLT4;;chr1:33721900..33721921,+!p2@ZNF362!0.66!9.67!ZNF362;;chr7:96634850..96634874,+!p3@DLX6!0.66!3.59!DLX6;;chr11:34535332..34535347,-!p2@ELF5!0.66!3.59!ELF5;;chr14:73303182..73303194,-!p2@DPF3!0.66!3.59!DPF3;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.59!HOXB13;;chr3:12329339..12329356,+!p5@PPARG!0.66!3.59!PPARG;;chr19:42580274..42580375,+!p1@ZNF574!0.65!46.61!ZNF574;;chr19:53758058..53758088,-!p2@ZNF677!0.65!12.82!ZNF677;;chr17:46655730..46655791,-!p1@HOXB4!0.65!9.78!HOXB4;;chr7:27135591..27135658,-!p1@HOXA1!0.65!7.39!HOXA1;;chr10:97889464..97889494,+!p3@ZNF518A!0.65!7.06!ZNF518A;;chr12:3068668..3068689,+!p7@TEAD4!0.65!3.48!TEAD4;;chr2:10091783..10091811,+!p2@GRHL1!0.65!3.48!GRHL1;;chr3:141747950..141748004,-!p7@TFDP2!0.65!3.48!TFDP2;;chr10:45496346..45496409,+!p1@ZNF22!0.64!56.61!ZNF22;;chr2:85360499..85360598,+!p1@TCF7L1!0.64!21.95!TCF7L1;;chr16:73081974..73082002,-!p7@ZFHX3!0.64!4.13!ZFHX3;;chr3:12329320..12329338,+!p4@PPARG!0.64!3.69!PPARG;;chr14:29236269..29236285,+!p3@FOXG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ZNF410;;chr1:23857698..23857733,-!p1@E2F2!0.36!3.04!E2F2;;chr3:141820622..141820635,-!p5@TFDP2!0.36!2.93!TFDP2;;chr3:183415653..183415664,+!p2@YEATS2!0.36!2.17!YEATS2;;chr6:31515311..31515330,+!p3@NFKBIL1!0.36!2.17!NFKBIL1;;chr14:35873136..35873155,-!p9@NFKBIA!0.36!1.63!NFKBIA;;chr19:39390697..39390713,+!p4@NFKBIB!0.36!1.52!NFKBIB;;chr15:76629097..76629120,+!p2@ISL2!0.36!1.52!ISL2;;chr15:76629123..76629151,+!p1@ISL2!0.36!1.52!ISL2;;chr6:35465058..35465077,-!p2@TEAD3!0.36!1.41!TEAD3;;chr5:1882993..1883003,-!p9@IRX4!0.36!1.30!IRX4;;chr7:96635448..96635470,+!p5@DLX6!0.36!1.30!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.36!1.30!DLX5;;chr17:48046671..48046697,+!p4@DLX4!0.36!1.30!DLX4;;chr17:48046881..48046905,+!p5@DLX4!0.36!1.30!DLX4;;chr11:12696579..12696611,+!p4@TEAD1!0.36!1.30!TEAD1;;chr12:54332608..54332636,+!p1@HOXC13!0.36!1.30!HOXC13;;chr2:88752231..88752245,-!p2@FOXI3!0.36!1.30!FOXI3;;chr21:38071430..38071456,+!p1@SIM2!0.36!1.30!SIM2;;chrX:131540376..131540407,-!p14@MBNL3!0.36!1.30!MBNL3;;chr19:50432453..50432468,+!p1@ATF5!0.35!115.06!ATF5;;chr1:226595741..226595818,-!p1@PARP1!0.35!105.61!PARP1;;chr12:80084768..80084821,-!p2@PAWR!0.35!13.36!PAWR;;chr7:64838786..64838809,+!p2@ZNF92!0.35!10.97!ZNF92;;chr12:7079780..7079791,-!p2@PHB2!0.35!9.89!PHB2;;chr19:46272462..46272562,-!p1@SIX5!0.35!7.71!SIX5;;chr19:53970970..53971021,+!p1@ZNF813!0.35!4.02!ZNF813;;chr15:41913412..41913456,+!p3@MGA!0.35!3.69!MGA;;chr14:64970361..64970389,-!p4@ZBTB25!0.35!3.26!ZBTB25;;chr20:48807456..48807475,+!p3@CEBPB!0.35!3.15!CEBPB;;chr19:19976714..19976729,+!p3@ZNF253!0.35!3.04!ZNF253;;chr20:48807779..48807802,+!p10@CEBPB!0.35!2.61!CEBPB;;chr3:33481687..33481713,-!p4@UBP1!0.35!2.39!UBP1;;chr1:27023383..27023416,+!p7@ARID1A!0.35!2.06!ARID1A;;chr18:45457909..45457939,-!p8@SMAD2!0.35!1.74!SMAD2;;chr9:2017365..2017380,+!p9@SMARCA2!0.35!1.74!SMARCA2;;chr12:53845879..53845894,+!p1@PCBP2!0.34!1388.30!PCBP2;;chr12:69753448..69753577,+!p1@YEATS4!0.34!39.22!YEATS4;;chr12:104531945..104531996,-!p1@NFYB!0.34!27.05!NFYB;;chr11:129765427..129765492,-!p1@NFRKB!0.34!15.32!NFRKB;;chr12:6798616..6798684,-!p2@ZNF384!0.34!13.04!ZNF384;;chr7:99102865..99102894,+!p1@ZKSCAN5!0.34!9.24!ZKSCAN5;;chr12:53774567..53774658,+!p2@SP1!0.34!9.13!SP1;;chr5:178157651..178157689,-!p1@ZNF354A!0.34!7.39!ZNF354A;;chr19:2900917..2900981,+!p1@ZNF57!0.34!6.95!ZNF57;;chr7:137563945..137564001,-!p6@CREB3L2!0.34!4.02!CREB3L2;;chr20:48807171..48807234,+!p4@CEBPB!0.34!3.59!CEBPB;;chr11:130184672..130184696,-!p3@ZBTB44!0.34!2.93!ZBTB44;;chr8:128750175..128750201,+!p8@MYC!0.34!2.72!MYC;;chr9:2015275..2015287,+!p8@SMARCA2!0.34!2.39!SMARCA2;;chr6:15245677..15245723,+!p6@JARID2!0.34!2.17!JARID2;;chr10:22022947..22022965,+!p7@MLLT10!0.34!1.63!MLLT10;;chr13:73636621..73636647,+!p4@KLF5!0.34!1.20!KLF5;;chrY:21906623..21906637,-!p3@KDM5D!0.34!1.20!KDM5D;;chr19:45908278..45908282,-!p5@PPP1R13L!0.34!1.20!PPP1R13L;;chr19:58545454..58545498,+!p1@ZSCAN1!0.34!1.20!ZSCAN1;;chr1:24645921..24645973,+!p2@GRHL3!0.34!1.20!GRHL3;;chr20:55205825..55205847,+!p2@TFAP2C!0.34!1.20!TFAP2C;;chr18:42277095..42277130,+!p8@SETBP1!0.34!1.20!SETBP1;;chr2:177001268..177001287,+!p3@HOXD3!0.34!1.20!HOXD3;;chr2:177053386..177053402,+!p1@HOXD1!0.34!1.20!HOXD1;;chr12:51157837..51157892,+!p1@ATF1!0.33!41.50!ATF1;;chr6:7107939..7107993,+!p1@RREB1!0.33!22.16!RREB1;;chr5:138609782..138609826,+!p5@MATR3!0.33!12.06!MATR3;;chr8:144373550..144373617,+!p1@ZNF696!0.33!6.30!ZNF696;;chr10:114710244..114710257,+!p3@TCF7L2!0.33!4.56!TCF7L2;;chr1:8877735..8877760,-!p8@RERE!0.33!4.45!RERE;;chr12:80084167..80084197,-!p5@PAWR!0.33!3.80!PAWR;;chr13:46543725..46543747,-!p2@ZC3H13!0.33!2.93!ZC3H13;;chr1:35657108..35657135,-!p5@SFPQ!0.33!2.93!SFPQ;;chr10:114710553..114710585,+!p6@TCF7L2!0.33!2.61!TCF7L2;;chr14:103059006..103059017,+!p2@RCOR1!0.33!2.28!RCOR1;;chr20:52185447..52185462,-!p2@ZNF217!0.33!2.28!ZNF217;;chr19:37708814..37708838,+!p2@ZNF383!0.33!2.06!ZNF383;;chr10:114710083..114710092,+!p8@TCF7L2!0.33!1.85!TCF7L2;;chr10:48355030..48355090,+!p1@ZNF488!0.33!1.74!ZNF488;;chr19:39390652..39390663,+!p3@NFKBIB!0.33!1.74!NFKBIB;;chr20:46130619..46130664,+!p1@NCOA3!0.32!51.50!NCOA3;;chr7:102985160..102985273,-!p1@DNAJC2!0.32!47.04!DNAJC2;;chr22:21356378..21356422,-!p2@THAP7!0.32!15.97!THAP7;;chr12:115121962..115121987,-!p1@TBX3!0.32!15.43!TBX3;;chr1:93544821..93544861,+!p1@MTF2!0.32!14.23!MTF2;;chr3:40566428..40566480,+!p1@ZNF621!0.32!14.23!ZNF621;;chr2:10183651..10183713,+!p1@KLF11!0.32!13.25!KLF11;;chr17:47439568..47439641,-!p2@ZNF652!0.32!10.10!ZNF652;;chr19:12175535..12175554,+!p1@ZNF844!0.32!9.78!ZNF844;;chr22:50247449..50247515,+!p1@ZBED4!0.32!7.93!ZBED4;;chr17:5095126..5095169,-!p1@ZNF594!0.32!7.28!ZNF594;;chr19:53636125..53636178,-!p1@ZNF415!0.32!4.67!ZNF415;;chr3:44754126..44754171,+!p1@ZNF502!0.32!3.91!ZNF502;;chr15:90895471..90895543,+!p1@ZNF774!0.32!3.48!ZNF774;;chr20:42143077..42143126,+!p1@L3MBTL1!0.32!3.15!L3MBTL;;chr11:63684602..63684664,-!p1@RCOR2!0.32!3.04!RCOR2;;chr19:21265028..21265052,+!p2@ZNF714!0.32!2.61!ZNF714;;chr6: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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10785-110H2
 |is_a=EFO:0002091;;FF:0000210;;FF:0101575
 |is_obsolete=
+|library_id=CNhs11875
+|library_id_phase_based=2:CNhs11875
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10785
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10785
 |name=choriocarcinoma cell line:SCH
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11875,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 60: / Line 77: @@
 |rna_weight_ug=64.00695
 |sample_age=46
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0251
 |sample_cell_line=SCH
@@ Line 81: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10785-110H2;search_select_hide=table117:FF:10785-110H2
 }}

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FF:10785-110H2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0