FF:10795-110I3: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	anaplastic large cell lymphoma cell line:Ki-JK
Species:	Human (Homo sapiens)
Library ID:	CNhs11881
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	15
cell type	lymphoid cell
cell line	Ki-JK
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005574

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11881		CAGE		DRX007827		DRR008699

Accession ID Hg19

Library id		BAM		CTSS
CNhs11881		DRZ000124		DRZ001509

Accession ID Hg38

Library id		BAM		CTSS
CNhs11881		DRZ011474		DRZ012859

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005574

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10084		RNA-Seq		DRX057141		DRR062900

Accession ID Hg19

Library id		BAM		CTSS
RDhi10084		DRZ007976

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.282
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.479
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.018
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0334
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0818
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.299
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0812
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0424
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0833
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.65
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.0663
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0642
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0299
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0634
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0663
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0498
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0663
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0.966
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11881

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00765
MA0003.1	MA0003.1	0.706
MA0004.1	MA0004.1	0.0699
MA0006.1	MA0006.1	0.178
MA0007.1	MA0007.1	0.887
MA0009.1	MA0009.1	0.661
MA0014.1	MA0014.1	0.811
MA0017.1	MA0017.1	0.597
MA0018.2	MA0018.2	0.454
MA0019.1	MA0019.1	0.113
MA0024.1	MA0024.1	0.00231
MA0025.1	MA0025.1	0.294
MA0027.1	MA0027.1	0.786
MA0028.1	MA0028.1	6.6802e-5
MA0029.1	MA0029.1	0.827
MA0030.1	MA0030.1	0.00859
MA0031.1	MA0031.1	0.00438
MA0035.2	MA0035.2	0.626
MA0038.1	MA0038.1	0.914
MA0039.2	MA0039.2	0.824
MA0040.1	MA0040.1	0.0748
MA0041.1	MA0041.1	0.267
MA0042.1	MA0042.1	0.441
MA0043.1	MA0043.1	0.162
MA0046.1	MA0046.1	0.75
MA0047.2	MA0047.2	0.123
MA0048.1	MA0048.1	0.0962
MA0050.1	MA0050.1	1.27002e-6
MA0051.1	MA0051.1	0.00144
MA0052.1	MA0052.1	0.0337
MA0055.1	MA0055.1	0.016
MA0057.1	MA0057.1	0.877
MA0058.1	MA0058.1	0.101
MA0059.1	MA0059.1	1.37079e-4
MA0060.1	MA0060.1	0.281
MA0061.1	MA0061.1	0.551
MA0062.2	MA0062.2	6.76937e-7
MA0065.2	MA0065.2	0.044
MA0066.1	MA0066.1	0.515
MA0067.1	MA0067.1	0.432
MA0068.1	MA0068.1	0.268
MA0069.1	MA0069.1	0.278
MA0070.1	MA0070.1	0.271
MA0071.1	MA0071.1	0.0715
MA0072.1	MA0072.1	0.214
MA0073.1	MA0073.1	0.943
MA0074.1	MA0074.1	0.648
MA0076.1	MA0076.1	2.23231e-5
MA0077.1	MA0077.1	0.221
MA0078.1	MA0078.1	0.552
MA0079.2	MA0079.2	0.117
MA0080.2	MA0080.2	0.142
MA0081.1	MA0081.1	0.249
MA0083.1	MA0083.1	0.0152
MA0084.1	MA0084.1	0.346
MA0087.1	MA0087.1	0.285
MA0088.1	MA0088.1	0.00155
MA0090.1	MA0090.1	0.0115
MA0091.1	MA0091.1	0.503
MA0092.1	MA0092.1	0.548
MA0093.1	MA0093.1	0.0689
MA0099.2	MA0099.2	1.89598e-6
MA0100.1	MA0100.1	0.132
MA0101.1	MA0101.1	0.763
MA0102.2	MA0102.2	0.249
MA0103.1	MA0103.1	0.504
MA0104.2	MA0104.2	8.0745e-5
MA0105.1	MA0105.1	0.00336
MA0106.1	MA0106.1	0.55
MA0107.1	MA0107.1	0.235
MA0108.2	MA0108.2	2.11641e-7
MA0111.1	MA0111.1	0.343
MA0112.2	MA0112.2	0.273
MA0113.1	MA0113.1	0.722
MA0114.1	MA0114.1	0.134
MA0115.1	MA0115.1	0.488
MA0116.1	MA0116.1	0.00702
MA0117.1	MA0117.1	0.716
MA0119.1	MA0119.1	0.372
MA0122.1	MA0122.1	0.715
MA0124.1	MA0124.1	0.257
MA0125.1	MA0125.1	0.658
MA0131.1	MA0131.1	0.125
MA0135.1	MA0135.1	0.0848
MA0136.1	MA0136.1	5.03159e-5
MA0137.2	MA0137.2	1.98013e-6
MA0138.2	MA0138.2	0.393
MA0139.1	MA0139.1	0.208
MA0140.1	MA0140.1	0.823
MA0141.1	MA0141.1	0.00436
MA0142.1	MA0142.1	0.516
MA0143.1	MA0143.1	0.602
MA0144.1	MA0144.1	0.00126
MA0145.1	MA0145.1	0.44
MA0146.1	MA0146.1	0.0493
MA0147.1	MA0147.1	3.56026e-6
MA0148.1	MA0148.1	0.552
MA0149.1	MA0149.1	0.0255
MA0150.1	MA0150.1	0.00175
MA0152.1	MA0152.1	0.462
MA0153.1	MA0153.1	0.0664
MA0154.1	MA0154.1	0.543
MA0155.1	MA0155.1	0.127
MA0156.1	MA0156.1	1.6652e-7
MA0157.1	MA0157.1	0.0429
MA0159.1	MA0159.1	0.116
MA0160.1	MA0160.1	0.0281
MA0162.1	MA0162.1	0.576
MA0163.1	MA0163.1	1.56241e-13
MA0164.1	MA0164.1	0.79
MA0258.1	MA0258.1	0.182
MA0259.1	MA0259.1	0.0159

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11881

Novel motif	Logo	P-value
1	1	0.018
10	10	0.014
100	100	0.0229
101	101	0.534
102	102	0.371
103	103	0.308
104	104	0.793
105	105	0.631
106	106	0.594
107	107	0.275
108	108	0.719
109	109	0.00369
11	11	0.0352
110	110	0.138
111	111	0.327
112	112	0.617
113	113	0.932
114	114	0.24
115	115	0.656
116	116	0.125
117	117	0.00433
118	118	0.0619
119	119	0.266
12	12	0.749
120	120	0.354
121	121	0.154
122	122	0.467
123	123	2.56098e-4
124	124	0.629
125	125	0.599
126	126	0.528
127	127	0.655
128	128	0.263
129	129	0.32
13	13	0.0296
130	130	0.754
131	131	0.9
132	132	0.668
133	133	0.293
134	134	0.811
135	135	0.314
136	136	0.0724
137	137	0.656
138	138	0.147
139	139	0.303
14	14	0.875
140	140	0.198
141	141	0.96
142	142	0.361
143	143	0.011
144	144	0.821
145	145	0.781
146	146	0.708
147	147	0.328
148	148	0.0868
149	149	0.255
15	15	0.0835
150	150	0.941
151	151	0.767
152	152	0.291
153	153	0.922
154	154	0.804
155	155	0.134
156	156	0.48
157	157	0.618
158	158	0.657
159	159	0.812
16	16	0.955
160	160	0.299
161	161	0.572
162	162	0.141
163	163	0.722
164	164	0.0137
165	165	0.643
166	166	0.264
167	167	0.0377
168	168	0.374
169	169	0.118
17	17	0.726
18	18	0.225
19	19	0.739
2	2	0.407
20	20	0.107
21	21	0.102
22	22	0.92
23	23	0.463
24	24	0.257
25	25	0.15
26	26	0.0125
27	27	0.812
28	28	0.898
29	29	0.0434
3	3	0.154
30	30	0.0625
31	31	0.488
32	32	0.542
33	33	0.332
34	34	0.452
35	35	0.424
36	36	0.0292
37	37	0.241
38	38	0.578
39	39	0.537
4	4	0.89
40	40	0.141
41	41	0.879
42	42	0.156
43	43	0.642
44	44	0.0298
45	45	0.313
46	46	0.526
47	47	0.0219
48	48	0.0357
49	49	0.354
5	5	0.768
50	50	0.954
51	51	0.808
52	52	0.0835
53	53	0.408
54	54	0.716
55	55	0.695
56	56	0.945
57	57	0.149
58	58	0.292
59	59	0.937
6	6	0.432
60	60	0.971
61	61	0.206
62	62	0.0754
63	63	0.438
64	64	0.127
65	65	0.998
66	66	0.249
67	67	0.957
68	68	0.379
69	69	0.538
7	7	0.294
70	70	0.097
71	71	0.0784
72	72	0.418
73	73	0.386
74	74	0.592
75	75	0.00767
76	76	0.0501
77	77	0.736
78	78	0.113
79	79	0.345
8	8	0.153
80	80	0.157
81	81	0.397
82	82	0.363
83	83	0.836
84	84	0.658
85	85	0.706
86	86	0.335
87	87	0.237
88	88	0.754
89	89	0.934
9	9	0.45
90	90	0.00892
91	91	0.85
92	92	0.591
93	93	0.851
94	94	0.287
95	95	0.00261
96	96	0.191
97	97	0.168
98	98	0.214
99	99	0.594

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11881

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000084 T cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104868 anaplastic large cell lymphoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104868 (anaplastic large cell lymphoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007722
+|DRA_sample_Accession=CAGE@SAMD00005574
-|accession_numbers=CAGE;DRX007827;DRR008699;DRZ000124;DRZ001509
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005574
+|accession_numbers=CAGE;DRX007827;DRR008699;DRZ000124;DRZ001509;DRZ011474;DRZ012859
+|accession_numbers_RNASeq=RNA-Seq;DRX057141;DRR062900;DRZ007976
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.45!280.83!IRF4;;chr1:212873162..212873188,-!p3@BATF3!2.34!218.86!BATF3;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.63!ZBED2;;chr1:212873267..212873332,-!p1@BATF3!1.79!81.25!BATF3;;chr7:99621306..99621328,+!p5@ZKSCAN1!1.79!60.65!ZKSCAN1;;chr14:75988771..75988826,+!p1@BATF!1.70!64.93!BATF;;chr1:151798546..151798590,-!p2@RORC!1.68!47.30!RORC;;chr1:212873084..212873137,-!p2@BATF3!1.64!42.85!BATF3;;chr1:25291475..25291511,-!p2@RUNX3!1.62!40.38!RUNX3;;chr1:212873200..212873230,-!p5@BATF3!1.56!35.10!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.50!30.49!SP140;;chr2:231090471..231090504,+!p2@SP140!1.49!30.16!SP140;;chr14:75988831..75988847,+!p2@BATF!1.46!28.02!BATF;;chr19:36204309..36204335,+!p1@ZBTB32!1.46!27.52!ZBTB32;;chr6:135502408..135502459,+!p2@MYB!1.45!31.31!MYB;;chr1:212873061..212873080,-!p4@BATF3!1.45!27.03!BATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.44!33.29!NCOA7;;chr7:50348268..50348366,+!p4@IKZF1!1.44!26.37!IKZF1;;chr20:42295745..42295765,+!p1@MYBL2!1.43!402.12!MYBL2;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.54!IKZF1;;chr17:8027418..8027432,-!p1@HES7!1.41!24.72!HES7;;chr9:4117869..4117882,-!p12@GLIS3!1.40!24.23!GLIS3;;chr6:135502501..135502546,+!p1@MYB!1.39!28.35!MYB;;chr11:34645791..34645836,+!p3@EHF!1.38!23.24!EHF;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.68!BCL3;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.76!NCOA7;;chr20:62462566..62462631,-!p1@ZBTB46!1.32!37.41!ZBTB46;;chr6:106534192..106534224,+!p1@PRDM1!1.21!42.85!PRDM1;;chr2:191906489..191906517,-!p6@STAT4!1.20!14.67!STAT4;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.16!NCOA7;;chr15:60884706..60884743,-!p1@RORA!1.15!67.57!RORA;;chr6:106534230..106534254,+!p2@PRDM1!1.15!32.80!PRDM1;;chr22:30144620..30144638,-!p7@ZMAT5!1.15!13.02!ZMAT5;;chr12:27485762..27485776,+!p3@ARNTL2!1.13!33.46!ARNTL2;;chr20:42295713..42295738,+!p2@MYBL2!1.11!70.37!MYBL2;;chr22:30144465..30144495,-!p6@ZMAT5!1.11!11.87!ZMAT5;;chr1:158979872..158979898,+!p3@IFI16!1.09!35.27!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.34!PRDM1;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.21!GFI1;;chr3:18486354..18486377,-!p2@SATB1!1.07!13.35!SATB1;;chr13:100634031..100634045,+!p1@ZIC2!1.06!10.38!ZIC2;;chr1:25256756..25256774,-!p1@RUNX3!1.04!18.79!RUNX3;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.05!ZBED2;;chr6:45390399..45390418,+!p15@RUNX2!1.02!9.39!RUNX2;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.20!PCBP3;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.82!GLIS3;;chr6:45390300..45390335,+!p4@RUNX2!1.00!14.17!RUNX2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.99!14.34!ZC3H11A;;chr6:135502472..135502489,+!p3@MYB!0.99!8.73!MYB;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.68!IRF5;;chr1:158978768..158978800,+!p8@IFI16!0.98!8.57!IFI16;;chr1:3569072..3569093,+!p1@TP73!0.98!8.57!TP73;;chr14:95236551..95236576,-!p2@GSC!0.98!8.57!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.97!8.24!IRF8;;chr2:97202480..97202499,+!p1@ARID5A!0.94!80.75!ARID5A;;chr7:50344251..50344288,+!p3@IKZF1!0.94!7.75!IKZF1;;chr2:231134598..231134640,+!p6@SP140!0.93!7.42!SP140;;chr6:45390442..45390479,+!p8@RUNX2!0.91!11.21!RUNX2;;chr8:145669791..145669834,-!p1@TONSL!0.90!20.77!TONSL;;chr6:45390025..45390076,+!p2@RUNX2!0.90!17.14!RUNX2;;chr8:28243813..28243839,-!p4@ZNF395!0.90!12.85!ZNF395;;chr16:29818199..29818216,+!p11@MAZ!0.89!11.37!MAZ;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.29!EPAS1;;chr6:45390343..45390388,+!p10@RUNX2!0.86!8.73!RUNX2;;chr6:100061724..100061753,+!p1@PRDM13!0.86!6.26!PRDM13;;chr6:45390077..45390105,+!p9@RUNX2!0.85!7.91!RUNX2;;chr1:46972279..46972288,+!p1@DMBX1!0.85!6.10!DMBX1;;chrX:152599604..152599626,+!p1@ZNF275!0.84!48.12!ZNF275;;chr11:614891..614902,-!p15@IRF7!0.84!5.93!IRF7;;chr19:50432453..50432468,+!p1@ATF5!0.83!342.79!ATF5;;chr8:116681409..116681431,-!p2@TRPS1!0.83!16.48!TRPS1;;chr9:77112244..77112262,+!p1@RORB!0.82!6.43!RORB;;chr3:27763807..27763822,-!p1@EOMES!0.82!5.60!EOMES;;chr1:151804244..151804310,-!p1@RORC!0.81!5.44!RORC;;chr5:138609782..138609826,+!p5@MATR3!0.80!37.08!MATR3;;chr13:27998854..27998866,+!p3@GTF3A!0.80!11.37!GTF3A;;chr19:31840130..31840160,-!p2@TSHZ3!0.80!8.57!TSHZ3;;chr5:176738887..176738934,-!p1@MXD3!0.79!37.58!MXD3;;chr11:6947720..6947812,+!p1@ZNF215!0.79!6.92!ZNF215;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.11!KDM5D;;chr11:615570..615721,-!p2@IRF7!0.78!10.38!IRF7;;chr11:120107344..120107351,+!p1@POU2F3!0.78!6.26!POU2F3;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.94!ZIC5;;chr21:36207322..36207331,-!p65@RUNX1!0.77!4.94!RUNX1;;chr19:57791328..57791377,+!p2@ZNF460!0.76!62.96!ZNF460;;chr12:27485785..27485816,+!p1@ARNTL2!0.76!36.75!ARNTL2;;chr13:27998831..27998851,+!p2@GTF3A!0.76!31.48!GTF3A;;chr1:221052776..221052799,+!p1@HLX!0.76!9.06!HLX;;chr1:151798601..151798617,-!p3@RORC!0.76!4.78!RORC;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.78!ZFY;;chr19:12902289..12902307,+!p1@JUNB!0.75!1172.58!JUNB;;chr2:8822176..8822196,+!p1@ID2!0.75!728.76!ID2;;chr1:151319654..151319698,-!p2@RFX5!0.75!10.88!RFX5;;chr8:28243785..2824379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@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10795-110I3
 |is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0104868
 |is_obsolete=
 |library_id=CNhs11881
-|library_ids=CNhs11881
+|library_id_phase_based=2:CNhs11881
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10795
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10795
 |name=anaplastic large cell lymphoma cell line:Ki-JK
 |namespace=FANTOM5
@@ Line 50: / Line 62: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11881,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 66: / Line 79: @@
 |rna_tube_id=110I3
 |rna_weight_ug=23.6034
+|rnaseq_library_id=RDhi10084
 |sample_age=15
 |sample_category=cell lines
@@ Line 89: / Line 103: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10795-110I3;search_select_hide=table117:FF:10795-110I3
 }}

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FF:10795-110I3: Difference between revisions

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Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0