FF:11222-116B7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004784 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |HumanCAGEScanFiles=NCig10039;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008263;DRR009135;DRZ000560;DRZ001945;DRZ011910;DRZ013295 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11222-116B7 | |id=FF:11222-116B7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |||
|library_id=CNhs10848 | |||
|library_id_phase_based=2:CNhs10848 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11222 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11222 | |||
|name=Fibroblast - Gingival, donor4 (GFH2) | |name=Fibroblast - Gingival, donor4 (GFH2) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10039,,, | |profile_cagescan=NCig10039,,, | ||
|profile_hcage=CNhs10848,LSID700,release009,COMPLETED | |profile_hcage=CNhs10848,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.179729854714412,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0633505806498617,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0668993317990279,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170023942400399,0,0,0.274485338810358,-0.0411734602954699,0,0,0.264201586542205,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324306588315252,0,0,0,-0.0900703149804517,-0.149213555028679,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=21.8482 | |rna_weight_ug=21.8482 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.16697946058923e-220!GO:0005737;cytoplasm;1.82763578024112e-174!GO:0043231;intracellular membrane-bound organelle;1.63821971695616e-149!GO:0043227;membrane-bound organelle;2.83864338194252e-149!GO:0043226;organelle;5.02817320040311e-146!GO:0043229;intracellular organelle;1.08310668722729e-145!GO:0044444;cytoplasmic part;3.4562469490107e-126!GO:0044422;organelle part;3.94925172481703e-112!GO:0044446;intracellular organelle part;8.94648446293671e-111!GO:0032991;macromolecular complex;1.28740232757633e-74!GO:0005515;protein binding;1.02504435861884e-73!GO:0044237;cellular metabolic process;1.46854757106216e-68!GO:0044238;primary metabolic process;9.07546758980651e-68!GO:0030529;ribonucleoprotein complex;7.56307515104947e-63!GO:0043170;macromolecule metabolic process;4.13899496084383e-61!GO:0003723;RNA binding;2.24107647768686e-56!GO:0043233;organelle lumen;5.78739762304726e-56!GO:0031974;membrane-enclosed lumen;5.78739762304726e-56!GO:0005739;mitochondrion;5.05583337575839e-54!GO:0044428;nuclear part;1.30262491079065e-52!GO:0031090;organelle membrane;1.96479317545744e-49!GO:0019538;protein metabolic process;9.61748834898575e-48!GO:0005634;nucleus;9.81940837932731e-48!GO:0044260;cellular macromolecule metabolic process;2.89941218281197e-43!GO:0016043;cellular component organization and biogenesis;1.83042898692843e-42!GO:0044267;cellular protein metabolic process;1.94150557379686e-42!GO:0015031;protein transport;9.55054981892852e-41!GO:0033036;macromolecule localization;1.57522654964471e-40!GO:0005840;ribosome;1.44500302649648e-38!GO:0045184;establishment of protein localization;1.60679466917939e-38!GO:0043234;protein complex;1.62828593441482e-38!GO:0008104;protein localization;5.00495820307751e-38!GO:0006412;translation;5.75791926779626e-38!GO:0009058;biosynthetic process;9.95694279248585e-36!GO:0005829;cytosol;2.06183829047213e-35!GO:0044429;mitochondrial part;4.15145703209035e-35!GO:0003735;structural constituent of ribosome;8.2559833039504e-34!GO:0006396;RNA processing;1.2653851895228e-33!GO:0009059;macromolecule biosynthetic process;5.07239182227741e-33!GO:0044249;cellular biosynthetic process;1.92809354076559e-32!GO:0031981;nuclear lumen;1.45825609344351e-31!GO:0031967;organelle envelope;1.72419650421129e-31!GO:0031975;envelope;3.5494160966268e-31!GO:0033279;ribosomal subunit;2.50345721971427e-30!GO:0043283;biopolymer metabolic process;1.92380838770866e-29!GO:0016071;mRNA metabolic process;5.14156235438092e-29!GO:0046907;intracellular transport;4.60226795682338e-28!GO:0008380;RNA splicing;3.04777480859949e-26!GO:0065003;macromolecular complex assembly;9.1874442944423e-26!GO:0006886;intracellular protein transport;1.03807398643837e-25!GO:0010467;gene expression;4.62297922973457e-25!GO:0006397;mRNA processing;2.03824914044847e-24!GO:0005783;endoplasmic reticulum;2.13225224021421e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92931846241364e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.67201559444827e-23!GO:0005740;mitochondrial envelope;7.90631896465009e-23!GO:0012505;endomembrane system;1.01698375027471e-22!GO:0022607;cellular component assembly;1.51926481659873e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.05030977183237e-22!GO:0031966;mitochondrial membrane;1.18032281036719e-21!GO:0006996;organelle organization and biogenesis;3.32663707764367e-21!GO:0019866;organelle inner membrane;3.60696137654391e-20!GO:0016462;pyrophosphatase activity;4.5117058280879e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.74508163759758e-20!GO:0006119;oxidative phosphorylation;8.23968038331473e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.5601512787187e-20!GO:0005794;Golgi apparatus;9.91492567255938e-20!GO:0005654;nucleoplasm;1.41740080368956e-19!GO:0017111;nucleoside-triphosphatase activity;2.20785367910262e-19!GO:0043228;non-membrane-bound organelle;4.93960149718242e-19!GO:0043232;intracellular non-membrane-bound organelle;4.93960149718242e-19!GO:0044432;endoplasmic reticulum part;5.55198444088187e-19!GO:0048770;pigment granule;6.32762388931814e-19!GO:0042470;melanosome;6.32762388931814e-19!GO:0051649;establishment of cellular localization;6.66295145116771e-19!GO:0051641;cellular localization;7.15503998657023e-19!GO:0005743;mitochondrial inner membrane;8.08849301358434e-19!GO:0044445;cytosolic part;9.78785381078614e-19!GO:0000166;nucleotide binding;7.71991370554742e-18!GO:0005681;spliceosome;9.86522693800509e-18!GO:0006457;protein folding;2.24684381220581e-17!GO:0008134;transcription factor binding;5.12101085006998e-17!GO:0006512;ubiquitin cycle;1.40286730600614e-16!GO:0006259;DNA metabolic process;1.40403919513233e-16!GO:0044451;nucleoplasm part;3.25840671498766e-16!GO:0016874;ligase activity;3.85330313479616e-16!GO:0015935;small ribosomal subunit;4.23933791566758e-16!GO:0043285;biopolymer catabolic process;4.83451147061656e-16!GO:0030163;protein catabolic process;2.479746931538e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.99174112914757e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.07127087876753e-15!GO:0015934;large ribosomal subunit;3.15045639119313e-15!GO:0019941;modification-dependent protein catabolic process;5.61549216687816e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.61549216687816e-15!GO:0022618;protein-RNA complex assembly;5.65572160661697e-15!GO:0044455;mitochondrial membrane part;6.28491486237832e-15!GO:0007049;cell cycle;7.56291034238007e-15!GO:0044265;cellular macromolecule catabolic process;8.24956774985406e-15!GO:0009057;macromolecule catabolic process;8.43856670550291e-15!GO:0044257;cellular protein catabolic process;9.65853890591017e-15!GO:0031980;mitochondrial lumen;1.00493815724753e-14!GO:0005759;mitochondrial matrix;1.00493815724753e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.33746810283365e-14!GO:0051186;cofactor metabolic process;2.81558981789528e-14!GO:0012501;programmed cell death;2.81558981789528e-14!GO:0005746;mitochondrial respiratory chain;7.44097657790015e-14!GO:0006915;apoptosis;1.15299563497024e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17120036551884e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.18400283510327e-13!GO:0017076;purine nucleotide binding;2.24658444123616e-13!GO:0032553;ribonucleotide binding;2.27956065077543e-13!GO:0032555;purine ribonucleotide binding;2.27956065077543e-13!GO:0006605;protein targeting;2.87608072848893e-13!GO:0008135;translation factor activity, nucleic acid binding;3.093803164599e-13!GO:0005789;endoplasmic reticulum membrane;4.19951153214335e-13!GO:0008219;cell death;4.47252131638619e-13!GO:0016265;death;4.47252131638619e-13!GO:0016192;vesicle-mediated transport;6.18812336917534e-13!GO:0048193;Golgi vesicle transport;8.08317721136189e-13!GO:0044248;cellular catabolic process;1.05961172575579e-12!GO:0005730;nucleolus;1.19268070798707e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.62953188756109e-12!GO:0003954;NADH dehydrogenase activity;1.62953188756109e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.62953188756109e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17138032434759e-12!GO:0048523;negative regulation of cellular process;2.99527396868576e-12!GO:0043412;biopolymer modification;5.80069990641465e-12!GO:0051082;unfolded protein binding;5.88132862308205e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.58960089790128e-12!GO:0003676;nucleic acid binding;1.39250050914804e-11!GO:0005793;ER-Golgi intermediate compartment;1.39949215151377e-11!GO:0003712;transcription cofactor activity;1.59286483092868e-11!GO:0005761;mitochondrial ribosome;1.69596665990397e-11!GO:0000313;organellar ribosome;1.69596665990397e-11!GO:0022402;cell cycle process;2.97184808007793e-11!GO:0008639;small protein conjugating enzyme activity;2.97184808007793e-11!GO:0006732;coenzyme metabolic process;3.01971879205185e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.17967973418301e-11!GO:0042773;ATP synthesis coupled electron transport;6.17967973418301e-11!GO:0004842;ubiquitin-protein ligase activity;6.51290928289106e-11!GO:0003743;translation initiation factor activity;7.99551503992747e-11!GO:0006464;protein modification process;9.36858363090422e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.89010260896445e-11!GO:0045271;respiratory chain complex I;9.89010260896445e-11!GO:0005747;mitochondrial respiratory chain complex I;9.89010260896445e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03053273740936e-10!GO:0048519;negative regulation of biological process;1.25586106683021e-10!GO:0019787;small conjugating protein ligase activity;1.80585495056753e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.53088833137592e-10!GO:0005524;ATP binding;3.89118092715055e-10!GO:0032559;adenyl ribonucleotide binding;6.79672602017114e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.21990749347585e-10!GO:0000375;RNA splicing, via transesterification reactions;7.21990749347585e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.21990749347585e-10!GO:0006974;response to DNA damage stimulus;8.01752728980007e-10!GO:0051726;regulation of cell cycle;8.39809624728969e-10!GO:0030554;adenyl nucleotide binding;8.44742915521046e-10!GO:0006413;translational initiation;9.2299963828136e-10!GO:0000074;regulation of progression through cell cycle;9.35023311050343e-10!GO:0003924;GTPase activity;9.67005060469202e-10!GO:0009259;ribonucleotide metabolic process;1.6753889463252e-09!GO:0005635;nuclear envelope;1.90434351774675e-09!GO:0009055;electron carrier activity;2.11022020950473e-09!GO:0006366;transcription from RNA polymerase II promoter;2.69598659124495e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.09357468699031e-09!GO:0042623;ATPase activity, coupled;3.14150890509325e-09!GO:0009150;purine ribonucleotide metabolic process;3.26918606765259e-09!GO:0043067;regulation of programmed cell death;3.2801981413747e-09!GO:0016070;RNA metabolic process;3.59095279709447e-09!GO:0042981;regulation of apoptosis;3.82328852567376e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.00369302371444e-09!GO:0016881;acid-amino acid ligase activity;5.70333602892382e-09!GO:0006163;purine nucleotide metabolic process;5.96107363131167e-09!GO:0006446;regulation of translational initiation;6.8582251800397e-09!GO:0006913;nucleocytoplasmic transport;6.99508013069036e-09!GO:0031965;nuclear membrane;7.83407101026368e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.91291449509398e-09!GO:0009141;nucleoside triphosphate metabolic process;8.10279955149451e-09!GO:0016887;ATPase activity;8.10632485665691e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.01059954423493e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12317460039516e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.12317460039516e-08!GO:0043687;post-translational protein modification;1.21679154566959e-08!GO:0044431;Golgi apparatus part;1.30671350976697e-08!GO:0051169;nuclear transport;1.37862448468801e-08!GO:0009056;catabolic process;1.67834166392501e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.71493416085446e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.75296473426882e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.79537905973061e-08!GO:0016604;nuclear body;2.04565313335501e-08!GO:0005788;endoplasmic reticulum lumen;2.09865353667624e-08!GO:0009260;ribonucleotide biosynthetic process;2.13564551515861e-08!GO:0016491;oxidoreductase activity;2.32519062914394e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.33906894796199e-08!GO:0045333;cellular respiration;2.51385093862342e-08!GO:0015986;ATP synthesis coupled proton transport;3.08227283731745e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.08227283731745e-08!GO:0006164;purine nucleotide biosynthetic process;3.26821869898724e-08!GO:0000278;mitotic cell cycle;3.47651862429511e-08!GO:0046034;ATP metabolic process;3.80217930232089e-08!GO:0005768;endosome;4.03299178049368e-08!GO:0044453;nuclear membrane part;4.75669037625956e-08!GO:0050794;regulation of cellular process;4.89013909338099e-08!GO:0019829;cation-transporting ATPase activity;5.28984797585667e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;5.32066269129057e-08!GO:0004386;helicase activity;5.46521526924089e-08!GO:0005773;vacuole;5.56483870308e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.76870006257979e-08!GO:0051276;chromosome organization and biogenesis;7.18537351962374e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.12182901024363e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.12182901024363e-08!GO:0008565;protein transporter activity;8.77372321297269e-08!GO:0042254;ribosome biogenesis and assembly;8.79255339390451e-08!GO:0006461;protein complex assembly;1.0112575796579e-07!GO:0016787;hydrolase activity;1.09522214453503e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.15044746174355e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.15044746174355e-07!GO:0043069;negative regulation of programmed cell death;1.17419038498762e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.21904401982173e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.22603889572932e-07!GO:0006323;DNA packaging;1.53274230444829e-07!GO:0009117;nucleotide metabolic process;1.69754126614667e-07!GO:0009719;response to endogenous stimulus;1.75148680374845e-07!GO:0051246;regulation of protein metabolic process;1.8968597354349e-07!GO:0030120;vesicle coat;1.8968597354349e-07!GO:0030662;coated vesicle membrane;1.8968597354349e-07!GO:0048522;positive regulation of cellular process;2.0313885879665e-07!GO:0008026;ATP-dependent helicase activity;2.09558237061499e-07!GO:0009060;aerobic respiration;2.18013850526468e-07!GO:0043066;negative regulation of apoptosis;2.42427431753396e-07!GO:0045786;negative regulation of progression through cell cycle;2.56472255362411e-07!GO:0017038;protein import;2.96922275528173e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.30939148183921e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.30939148183921e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.30939148183921e-07!GO:0008361;regulation of cell size;3.35479683572913e-07!GO:0006281;DNA repair;3.44703595928625e-07!GO:0006754;ATP biosynthetic process;3.47477855157184e-07!GO:0006753;nucleoside phosphate metabolic process;3.47477855157184e-07!GO:0016049;cell growth;3.53218063031292e-07!GO:0006916;anti-apoptosis;3.55149888540679e-07!GO:0048475;coated membrane;3.64699422608538e-07!GO:0030117;membrane coat;3.64699422608538e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.92009149987875e-07!GO:0051188;cofactor biosynthetic process;4.3110164779007e-07!GO:0006399;tRNA metabolic process;5.22746261844387e-07!GO:0043038;amino acid activation;5.42355918009479e-07!GO:0006418;tRNA aminoacylation for protein translation;5.42355918009479e-07!GO:0043039;tRNA aminoacylation;5.42355918009479e-07!GO:0000323;lytic vacuole;6.04852889811954e-07!GO:0005764;lysosome;6.04852889811954e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.43469938925996e-07!GO:0031324;negative regulation of cellular metabolic process;9.79554726483357e-07!GO:0065004;protein-DNA complex assembly;1.11490518621963e-06!GO:0031252;leading edge;1.12842506312245e-06!GO:0005694;chromosome;1.27084646556372e-06!GO:0001558;regulation of cell growth;1.32986520392822e-06!GO:0000139;Golgi membrane;1.65578959235389e-06!GO:0016567;protein ubiquitination;1.89041754707064e-06!GO:0016607;nuclear speck;2.01904500074596e-06!GO:0032446;protein modification by small protein conjugation;2.09416921949613e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.26402207721569e-06!GO:0031988;membrane-bound vesicle;2.315089755632e-06!GO:0004298;threonine endopeptidase activity;2.85492653332121e-06!GO:0000151;ubiquitin ligase complex;3.16607780489295e-06!GO:0065002;intracellular protein transport across a membrane;3.84345420362792e-06!GO:0031982;vesicle;3.92927886547916e-06!GO:0005525;GTP binding;3.9466484132522e-06!GO:0003713;transcription coactivator activity;3.95958995933924e-06!GO:0006333;chromatin assembly or disassembly;4.02158419454652e-06!GO:0031410;cytoplasmic vesicle;4.36249564945786e-06!GO:0006091;generation of precursor metabolites and energy;4.42812851985793e-06!GO:0005643;nuclear pore;4.53094086318336e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.53094086318336e-06!GO:0051187;cofactor catabolic process;5.28241701596361e-06!GO:0007243;protein kinase cascade;5.38574742406006e-06!GO:0006099;tricarboxylic acid cycle;5.50161997340619e-06!GO:0046356;acetyl-CoA catabolic process;5.50161997340619e-06!GO:0043566;structure-specific DNA binding;6.59642567172017e-06!GO:0016564;transcription repressor activity;7.01834596433258e-06!GO:0050789;regulation of biological process;7.43653000716616e-06!GO:0009108;coenzyme biosynthetic process;8.20503462680887e-06!GO:0006752;group transfer coenzyme metabolic process;8.64561321184706e-06!GO:0048518;positive regulation of biological process;1.03491659265718e-05!GO:0009109;coenzyme catabolic process;1.07342580408276e-05!GO:0051170;nuclear import;1.18329524909843e-05!GO:0005770;late endosome;1.23020578483585e-05!GO:0045259;proton-transporting ATP synthase complex;1.23122698284063e-05!GO:0003714;transcription corepressor activity;1.25143208227727e-05!GO:0006084;acetyl-CoA metabolic process;1.37985312184425e-05!GO:0044427;chromosomal part;1.41295296561537e-05!GO:0006606;protein import into nucleus;1.47977695451989e-05!GO:0006613;cotranslational protein targeting to membrane;1.47977695451989e-05!GO:0051789;response to protein stimulus;1.59740113963862e-05!GO:0006986;response to unfolded protein;1.59740113963862e-05!GO:0044440;endosomal part;1.65795512673442e-05!GO:0010008;endosome membrane;1.65795512673442e-05!GO:0003697;single-stranded DNA binding;1.6933073268378e-05!GO:0046930;pore complex;1.6933073268378e-05!GO:0009892;negative regulation of metabolic process;1.78160516535775e-05!GO:0032561;guanyl ribonucleotide binding;2.10682720180637e-05!GO:0019001;guanyl nucleotide binding;2.10682720180637e-05!GO:0007005;mitochondrion organization and biogenesis;2.34822666062225e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.66886327940463e-05!GO:0005798;Golgi-associated vesicle;2.72228011787422e-05!GO:0000245;spliceosome assembly;3.04606423402459e-05!GO:0016563;transcription activator activity;3.05918026293626e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.14185539969443e-05!GO:0050657;nucleic acid transport;3.58702942151451e-05!GO:0051236;establishment of RNA localization;3.58702942151451e-05!GO:0050658;RNA transport;3.58702942151451e-05!GO:0006403;RNA localization;3.87773720374504e-05!GO:0000785;chromatin;4.78931843766996e-05!GO:0016568;chromatin modification;4.89315860943842e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.00392862147022e-05!GO:0030867;rough endoplasmic reticulum membrane;5.19000002302455e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.42802748723173e-05!GO:0005667;transcription factor complex;5.87700913350988e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.03454967053688e-05!GO:0016481;negative regulation of transcription;7.44038090625654e-05!GO:0008654;phospholipid biosynthetic process;7.48942458300013e-05!GO:0051301;cell division;7.48942458300013e-05!GO:0006260;DNA replication;7.79079606583506e-05!GO:0045454;cell redox homeostasis;8.35843129701188e-05!GO:0016853;isomerase activity;8.57840932608434e-05!GO:0006334;nucleosome assembly;9.03415810100463e-05!GO:0006364;rRNA processing;9.24521661413271e-05!GO:0000087;M phase of mitotic cell cycle;9.41930397046197e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.49307594015046e-05!GO:0016859;cis-trans isomerase activity;9.86485070005041e-05!GO:0040008;regulation of growth;0.000103169898296832!GO:0006612;protein targeting to membrane;0.000103265632651949!GO:0031968;organelle outer membrane;0.000104753533670885!GO:0030133;transport vesicle;0.000113034769834722!GO:0043623;cellular protein complex assembly;0.000113984201269365!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000114785090027063!GO:0022403;cell cycle phase;0.000116444032006006!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00011999176768832!GO:0006793;phosphorus metabolic process;0.000131867137625307!GO:0006796;phosphate metabolic process;0.000131867137625307!GO:0019867;outer membrane;0.000132260031442631!GO:0016740;transferase activity;0.000136200027795042!GO:0007067;mitosis;0.000137351399087606!GO:0005762;mitochondrial large ribosomal subunit;0.000137351399087606!GO:0000315;organellar large ribosomal subunit;0.000137351399087606!GO:0016072;rRNA metabolic process;0.000142466413990684!GO:0016310;phosphorylation;0.000143399433264373!GO:0031497;chromatin assembly;0.000164637324864173!GO:0009967;positive regulation of signal transduction;0.00017936997738322!GO:0005769;early endosome;0.000201168547435083!GO:0015630;microtubule cytoskeleton;0.000212823846287803!GO:0003724;RNA helicase activity;0.000238284355852625!GO:0005048;signal sequence binding;0.000254217095644809!GO:0051427;hormone receptor binding;0.000264353210185373!GO:0048468;cell development;0.00030211309921429!GO:0008250;oligosaccharyl transferase complex;0.000353422632159939!GO:0005791;rough endoplasmic reticulum;0.00036284978613205!GO:0019843;rRNA binding;0.000378503124208961!GO:0005741;mitochondrial outer membrane;0.000421531109637281!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000458714009127262!GO:0007050;cell cycle arrest;0.000463186997350587!GO:0044262;cellular carbohydrate metabolic process;0.000500364640347977!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00051764443702663!GO:0035257;nuclear hormone receptor binding;0.000531194426174378!GO:0004576;oligosaccharyl transferase activity;0.000536548952283835!GO:0033116;ER-Golgi intermediate compartment membrane;0.000564608660528943!GO:0043021;ribonucleoprotein binding;0.000573669547018654!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000579036159836776!GO:0015399;primary active transmembrane transporter activity;0.000579036159836776!GO:0005885;Arp2/3 protein complex;0.00057955552411764!GO:0009165;nucleotide biosynthetic process;0.000611656324047901!GO:0051028;mRNA transport;0.000674649831558189!GO:0016044;membrane organization and biogenesis;0.000728004769680503!GO:0006950;response to stress;0.000752886139122017!GO:0005905;coated pit;0.000756718636422463!GO:0030036;actin cytoskeleton organization and biogenesis;0.000805396754792393!GO:0030663;COPI coated vesicle membrane;0.00085714541812837!GO:0030126;COPI vesicle coat;0.00085714541812837!GO:0022890;inorganic cation transmembrane transporter activity;0.0008683430043311!GO:0016779;nucleotidyltransferase activity;0.000917530942748989!GO:0019899;enzyme binding;0.000917530942748989!GO:0065007;biological regulation;0.000929296313241865!GO:0009615;response to virus;0.00100765993534727!GO:0051329;interphase of mitotic cell cycle;0.00108968194387164!GO:0005813;centrosome;0.00110794439929607!GO:0030027;lamellipodium;0.00113985483180007!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00119640641323793!GO:0031072;heat shock protein binding;0.00121062127317885!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00122851695152394!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00134662333734452!GO:0051920;peroxiredoxin activity;0.00135865812633872!GO:0018196;peptidyl-asparagine modification;0.00137051112942131!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00137051112942131!GO:0045892;negative regulation of transcription, DNA-dependent;0.00141910670459374!GO:0000314;organellar small ribosomal subunit;0.00155806665357356!GO:0005763;mitochondrial small ribosomal subunit;0.00155806665357356!GO:0003690;double-stranded DNA binding;0.00178858635054843!GO:0030137;COPI-coated vesicle;0.00201377777599137!GO:0065009;regulation of a molecular function;0.00209273011700056!GO:0005815;microtubule organizing center;0.00217875285287656!GO:0043492;ATPase activity, coupled to movement of substances;0.00227643363316554!GO:0008632;apoptotic program;0.00245522678063663!GO:0003729;mRNA binding;0.00245522678063663!GO:0051252;regulation of RNA metabolic process;0.00248420490851797!GO:0015992;proton transport;0.00249562428751729!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00251530606744633!GO:0030659;cytoplasmic vesicle membrane;0.0025261691589374!GO:0006818;hydrogen transport;0.00274102039954248!GO:0046474;glycerophospholipid biosynthetic process;0.00279904386464725!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00296306645890186!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00296306645890186!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00296306645890186!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00300983193506772!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0031561689372441!GO:0008186;RNA-dependent ATPase activity;0.0031561689372441!GO:0048500;signal recognition particle;0.00318220200374371!GO:0045893;positive regulation of transcription, DNA-dependent;0.00338009122911393!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00346337776230007!GO:0043488;regulation of mRNA stability;0.00346337776230007!GO:0043487;regulation of RNA stability;0.00346337776230007!GO:0006891;intra-Golgi vesicle-mediated transport;0.00396663632705859!GO:0030132;clathrin coat of coated pit;0.00402114042624521!GO:0006509;membrane protein ectodomain proteolysis;0.00402158213173102!GO:0033619;membrane protein proteolysis;0.00402158213173102!GO:0007040;lysosome organization and biogenesis;0.00404384920671933!GO:0042802;identical protein binding;0.00425751662304164!GO:0016363;nuclear matrix;0.00433746440852967!GO:0045792;negative regulation of cell size;0.00434960577018834!GO:0051325;interphase;0.00451653367148309!GO:0051128;regulation of cellular component organization and biogenesis;0.00451653367148309!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00464138557363173!GO:0001726;ruffle;0.00474397979305587!GO:0030118;clathrin coat;0.00475220781966441!GO:0030145;manganese ion binding;0.00479800228967524!GO:0000279;M phase;0.00486109857836861!GO:0043065;positive regulation of apoptosis;0.00489120438808608!GO:0030176;integral to endoplasmic reticulum membrane;0.00519398150524606!GO:0008610;lipid biosynthetic process;0.00520683711416448!GO:0045941;positive regulation of transcription;0.00537392949039539!GO:0030029;actin filament-based process;0.00538524435378086!GO:0051287;NAD binding;0.00552803441404755!GO:0046489;phosphoinositide biosynthetic process;0.00558942648184213!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00570841408710182!GO:0016126;sterol biosynthetic process;0.00581198877523181!GO:0006979;response to oxidative stress;0.00581198877523181!GO:0019752;carboxylic acid metabolic process;0.00592463540633676!GO:0030308;negative regulation of cell growth;0.00592997487270454!GO:0043068;positive regulation of programmed cell death;0.00596551867330166!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00599019407717913!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00601167909643996!GO:0030521;androgen receptor signaling pathway;0.00603935406676551!GO:0051540;metal cluster binding;0.00612897823215861!GO:0051536;iron-sulfur cluster binding;0.00612897823215861!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00619115572808046!GO:0048487;beta-tubulin binding;0.00626596157735966!GO:0044433;cytoplasmic vesicle part;0.00632278904274682!GO:0006082;organic acid metabolic process;0.00634483429896251!GO:0051168;nuclear export;0.00644544927233098!GO:0006402;mRNA catabolic process;0.00661084130560234!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00684022870015962!GO:0045047;protein targeting to ER;0.00684022870015962!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00685339408816332!GO:0015002;heme-copper terminal oxidase activity;0.00685339408816332!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00685339408816332!GO:0004129;cytochrome-c oxidase activity;0.00685339408816332!GO:0046467;membrane lipid biosynthetic process;0.00706475999812895!GO:0008092;cytoskeletal protein binding;0.00706475999812895!GO:0045045;secretory pathway;0.00706475999812895!GO:0043284;biopolymer biosynthetic process;0.00716742057239732!GO:0008154;actin polymerization and/or depolymerization;0.00716742057239732!GO:0008139;nuclear localization sequence binding;0.00736440376937754!GO:0022415;viral reproductive process;0.00760426868412082!GO:0030658;transport vesicle membrane;0.0076396200427374!GO:0004004;ATP-dependent RNA helicase activity;0.00777407338274799!GO:0006790;sulfur metabolic process;0.00787349108852556!GO:0005581;collagen;0.00827072373710307!GO:0000082;G1/S transition of mitotic cell cycle;0.00859828759535227!GO:0030134;ER to Golgi transport vesicle;0.00890057227080849!GO:0030127;COPII vesicle coat;0.00891143075053055!GO:0012507;ER to Golgi transport vesicle membrane;0.00891143075053055!GO:0017166;vinculin binding;0.00895268392304274!GO:0006650;glycerophospholipid metabolic process;0.00895268392304274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00910858076451523!GO:0005774;vacuolar membrane;0.00922508841775244!GO:0006118;electron transport;0.00929658710895304!GO:0000059;protein import into nucleus, docking;0.0103118313743071!GO:0007033;vacuole organization and biogenesis;0.0105996380986819!GO:0031625;ubiquitin protein ligase binding;0.0105996380986819!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0109082269001196!GO:0045936;negative regulation of phosphate metabolic process;0.011293877571528!GO:0032984;macromolecular complex disassembly;0.0116063609689817!GO:0012506;vesicle membrane;0.0117801202457196!GO:0050662;coenzyme binding;0.0126176493611516!GO:0050681;androgen receptor binding;0.0126383329968057!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0126883401090745!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0126883401090745!GO:0035258;steroid hormone receptor binding;0.0128131414392927!GO:0048471;perinuclear region of cytoplasm;0.0129563133167731!GO:0006383;transcription from RNA polymerase III promoter;0.0131545471448334!GO:0007264;small GTPase mediated signal transduction;0.0135599009701492!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0137157360703861!GO:0004177;aminopeptidase activity;0.0137265777070904!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0141156148039075!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0141156148039075!GO:0005862;muscle thin filament tropomyosin;0.0141842058263231!GO:0030041;actin filament polymerization;0.0145914192867938!GO:0006414;translational elongation;0.0147250214161763!GO:0008312;7S RNA binding;0.0150127325554727!GO:0005869;dynactin complex;0.0153247766291519!GO:0030119;AP-type membrane coat adaptor complex;0.0154758279981975!GO:0008484;sulfuric ester hydrolase activity;0.0155133133051305!GO:0006352;transcription initiation;0.015607459203026!GO:0016197;endosome transport;0.0158863850844702!GO:0045926;negative regulation of growth;0.0161812258719352!GO:0051087;chaperone binding;0.0161939089432422!GO:0031529;ruffle organization and biogenesis;0.0163117147200369!GO:0043681;protein import into mitochondrion;0.0164343014089044!GO:0030518;steroid hormone receptor signaling pathway;0.017150077704686!GO:0030660;Golgi-associated vesicle membrane;0.0175459625507799!GO:0007010;cytoskeleton organization and biogenesis;0.0175826842298417!GO:0003899;DNA-directed RNA polymerase activity;0.0176756308725839!GO:0050811;GABA receptor binding;0.0179109477861955!GO:0008283;cell proliferation;0.0180349357328796!GO:0000287;magnesium ion binding;0.0180349357328796!GO:0031902;late endosome membrane;0.0180605478227202!GO:0046483;heterocycle metabolic process;0.0185286861739868!GO:0016251;general RNA polymerase II transcription factor activity;0.0186262564510796!GO:0006595;polyamine metabolic process;0.0188242147232708!GO:0044437;vacuolar part;0.0191377658902335!GO:0033559;unsaturated fatty acid metabolic process;0.0194943047503204!GO:0006636;unsaturated fatty acid biosynthetic process;0.0194943047503204!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0196373805174939!GO:0033043;regulation of organelle organization and biogenesis;0.0196373805174939!GO:0035035;histone acetyltransferase binding;0.0197039583283441!GO:0043241;protein complex disassembly;0.0200824940086971!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0202442816010024!GO:0006626;protein targeting to mitochondrion;0.0203994416018179!GO:0004228;gelatinase A activity;0.0204885347492266!GO:0001955;blood vessel maturation;0.0204885347492266!GO:0051052;regulation of DNA metabolic process;0.0208213046586804!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.021084794869553!GO:0032940;secretion by cell;0.0223327699209793!GO:0000049;tRNA binding;0.0225306020665987!GO:0006740;NADPH regeneration;0.0229501332863779!GO:0006098;pentose-phosphate shunt;0.0229501332863779!GO:0000339;RNA cap binding;0.0232039604030754!GO:0042326;negative regulation of phosphorylation;0.0233347513764679!GO:0008180;signalosome;0.0233347513764679!GO:0046519;sphingoid metabolic process;0.0235760007699239!GO:0007160;cell-matrix adhesion;0.0235824383724845!GO:0006897;endocytosis;0.0235926343945829!GO:0010324;membrane invagination;0.0235926343945829!GO:0033673;negative regulation of kinase activity;0.0235926343945829!GO:0006469;negative regulation of protein kinase activity;0.0235926343945829!GO:0043022;ribosome binding;0.0240909200094998!GO:0031589;cell-substrate adhesion;0.0243437062781621!GO:0043624;cellular protein complex disassembly;0.0243669678451395!GO:0006497;protein amino acid lipidation;0.0244035737003358!GO:0006401;RNA catabolic process;0.0251381924641612!GO:0031418;L-ascorbic acid binding;0.0253285752016781!GO:0005520;insulin-like growth factor binding;0.0253331091427887!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0256612102979046!GO:0030032;lamellipodium biogenesis;0.0256631889790213!GO:0006917;induction of apoptosis;0.0256631889790213!GO:0030384;phosphoinositide metabolic process;0.0258099659514931!GO:0016584;nucleosome positioning;0.026912224593103!GO:0008064;regulation of actin polymerization and/or depolymerization;0.026912224593103!GO:0030131;clathrin adaptor complex;0.026912224593103!GO:0001952;regulation of cell-matrix adhesion;0.0271706884969343!GO:0007034;vacuolar transport;0.0273751423394789!GO:0008047;enzyme activator activity;0.0274022020181348!GO:0022408;negative regulation of cell-cell adhesion;0.0274270439883529!GO:0006289;nucleotide-excision repair;0.0274617984997187!GO:0016272;prefoldin complex;0.0276689372441578!GO:0005765;lysosomal membrane;0.0278696058244079!GO:0006354;RNA elongation;0.0278819457269106!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0282355018154437!GO:0019798;procollagen-proline dioxygenase activity;0.0284033684212394!GO:0050790;regulation of catalytic activity;0.0284033684212394!GO:0051101;regulation of DNA binding;0.0284608506084879!GO:0007242;intracellular signaling cascade;0.0284608506084879!GO:0019222;regulation of metabolic process;0.0284748406727541!GO:0030833;regulation of actin filament polymerization;0.0285152375010038!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0285152375010038!GO:0005832;chaperonin-containing T-complex;0.0285286973556072!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0292319980362692!GO:0031543;peptidyl-proline dioxygenase activity;0.0293879784469845!GO:0007006;mitochondrial membrane organization and biogenesis;0.0296886802167008!GO:0031901;early endosome membrane;0.0304738303796208!GO:0006261;DNA-dependent DNA replication;0.0306012564097058!GO:0008637;apoptotic mitochondrial changes;0.0310271159354127!GO:0005637;nuclear inner membrane;0.0312047701025365!GO:0006672;ceramide metabolic process;0.0312205560195537!GO:0012502;induction of programmed cell death;0.0312630879969504!GO:0005159;insulin-like growth factor receptor binding;0.031342285014197!GO:0030100;regulation of endocytosis;0.0319487136481409!GO:0030125;clathrin vesicle coat;0.0321074073383002!GO:0030665;clathrin coated vesicle membrane;0.0321074073383002!GO:0040029;regulation of gene expression, epigenetic;0.032573131897554!GO:0006695;cholesterol biosynthetic process;0.0328453944450059!GO:0000209;protein polyubiquitination;0.0331629842030692!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0333600528129246!GO:0006611;protein export from nucleus;0.0333931385244127!GO:0005819;spindle;0.0333931385244127!GO:0030880;RNA polymerase complex;0.0337349168000699!GO:0032906;transforming growth factor-beta2 production;0.0344673314382243!GO:0032909;regulation of transforming growth factor-beta2 production;0.0344673314382243!GO:0007030;Golgi organization and biogenesis;0.0350311263310323!GO:0051348;negative regulation of transferase activity;0.0352213402414404!GO:0008234;cysteine-type peptidase activity;0.035245534537899!GO:0022411;cellular component disassembly;0.0356691094370986!GO:0003682;chromatin binding;0.0357642563327555!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.036393013760242!GO:0051539;4 iron, 4 sulfur cluster binding;0.0365858073743262!GO:0004860;protein kinase inhibitor activity;0.0365858073743262!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0384585152467498!GO:0010257;NADH dehydrogenase complex assembly;0.0384585152467498!GO:0033108;mitochondrial respiratory chain complex assembly;0.0384585152467498!GO:0008383;manganese superoxide dismutase activity;0.0384585152467498!GO:0001315;age-dependent response to reactive oxygen species;0.0384585152467498!GO:0048146;positive regulation of fibroblast proliferation;0.0384585152467498!GO:0000075;cell cycle checkpoint;0.0388644382259555!GO:0000786;nucleosome;0.0398444741579463!GO:0003923;GPI-anchor transamidase activity;0.0398444741579463!GO:0016255;attachment of GPI anchor to protein;0.0398444741579463!GO:0042765;GPI-anchor transamidase complex;0.0398444741579463!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0398444741579463!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0404486780686438!GO:0048144;fibroblast proliferation;0.0406005739337825!GO:0048145;regulation of fibroblast proliferation;0.0406005739337825!GO:0008022;protein C-terminus binding;0.0407929163576155!GO:0051059;NF-kappaB binding;0.0412056577928127!GO:0046979;TAP2 binding;0.041570980975749!GO:0046977;TAP binding;0.041570980975749!GO:0046978;TAP1 binding;0.041570980975749!GO:0007041;lysosomal transport;0.0422661838501309!GO:0005684;U2-dependent spliceosome;0.0424114907276423!GO:0009966;regulation of signal transduction;0.0424114907276423!GO:0030911;TPR domain binding;0.0436598517274013!GO:0030984;kininogen binding;0.0443031303343666!GO:0004213;cathepsin B activity;0.0443031303343666!GO:0000792;heterochromatin;0.0449571917831207!GO:0004527;exonuclease activity;0.0451646116351617!GO:0006778;porphyrin metabolic process;0.0451646116351617!GO:0033013;tetrapyrrole metabolic process;0.0451646116351617!GO:0008538;proteasome activator activity;0.0451747462395719!GO:0005586;collagen type III;0.0451747462395719!GO:0006376;mRNA splice site selection;0.0455506094678094!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0455506094678094!GO:0006506;GPI anchor biosynthetic process;0.045925368354079!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0461987416151005!GO:0001953;negative regulation of cell-matrix adhesion;0.0462367382837355!GO:0042158;lipoprotein biosynthetic process;0.0466606322544021!GO:0006984;ER-nuclear signaling pathway;0.0474647021993051!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0487390682401237!GO:0006892;post-Golgi vesicle-mediated transport;0.0496156297765059 | |||
|sample_id=11222 | |sample_id=11222 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 101: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=ZNF238:2.23120268032;ESR1:2.20077088531;TAL1_TCF{3,4,12}:1.56675570685;IRF1,2:1.55764858298;HES1:1.53086436786;NKX2-2,8:1.51169454215;SPZ1:1.4546573499;HMGA1,2:1.42690486448;GZF1:1.39426924362;NFIX:1.33181598779;IRF7:1.26132719643;TFAP4:1.21362263543;MYBL2:1.20292922238;TP53:1.19561515596;MAZ:1.17007001631;MAFB:1.15625226572;GLI1..3:1.15536010657;ALX4:1.14585102895;EBF1:1.14210214718;PAX3,7:1.12402212585;TFCP2:1.11585914126;FOXL1:1.09232357498;PATZ1:1.01225486177;LHX3,4:1.00516125503;TFDP1:0.925999130442;NFATC1..3:0.870330063134;KLF4:0.864116968888;TFAP2{A,C}:0.860593164822;FOXO1,3,4:0.859315713463;NKX2-3_NKX2-5:0.856336776221;PAX5:0.786140121167;SREBF1,2:0.771097844273;TEAD1:0.762373798208;PAX1,9:0.759092961888;NKX6-1,2:0.753632354159;TLX1..3_NFIC{dimer}:0.742238222229;HAND1,2:0.740717896137;NHLH1,2:0.733725647291;ZBTB6:0.731270530515;ATF6:0.68424070201;GTF2A1,2:0.673010829881;HMX1:0.668083540223;NKX3-1:0.58467357098;ZNF423:0.57928029673;YY1:0.573633888579;PRDM1:0.546878984576;UFEwm:0.535095721753;GTF2I:0.526342086275;DBP:0.507728701641;TBX4,5:0.487374690148;NFE2L2:0.477689525797;RXR{A,B,G}:0.459496917499;MTF1:0.457921871941;TFAP2B:0.452924964401;EVI1:0.438091549906;NANOG{mouse}:0.433672217137;SOX17:0.422413299598;PPARG:0.420712611352;MZF1:0.411426860741;GFI1:0.410523265967;HBP1_HMGB_SSRP1_UBTF:0.403884223195;PDX1:0.401264688145;NKX3-2:0.396817698209;HIC1:0.393523052041;MYB:0.346986605395;NR3C1:0.32210552749;FOXA2:0.319678017662;EGR1..3:0.304722166278;RREB1:0.297675719978;GATA4:0.296412383435;NR6A1:0.285267336103;LEF1_TCF7_TCF7L1,2:0.245267612557;CEBPA,B_DDIT3:0.244865294793;HSF1,2:0.241519440274;MYFfamily:0.23884093774;MTE{core}:0.238808610955;HOX{A6,A7,B6,B7}:0.227727747637;ZNF148:0.226146189303;SMAD1..7,9:0.223160230289;HLF:0.218584186911;NFIL3:0.195754977725;ADNP_IRX_SIX_ZHX:0.175986974389;GFI1B:0.175413733544;XBP1:0.169887086121;RORA:0.15737095577;SRF:0.153037498524;MED-1{core}:0.131403655653;TBP:0.124352369897;XCPE1{core}:0.0919756752386;PRRX1,2:0.0859007805813;REST:0.0829990758736;HOX{A4,D4}:0.0731624044184;FOX{I1,J2}:0.0695075634209;HNF4A_NR2F1,2:0.0569099822678;STAT2,4,6:0.0532205711126;DMAP1_NCOR{1,2}_SMARC:0.0528940515903;SP1:0.0421029767528;ATF5_CREB3:0.0411241292412;FOS_FOS{B,L1}_JUN{B,D}:0.0320037552997;HNF1A:0.015294463613;BACH2:0.0122783734455;BPTF:0.00968638788455;EN1,2:0.00836000687458;NFKB1_REL_RELA:-0.0162171359473;HOXA9_MEIS1:-0.0358795873106;bHLH_family:-0.0456628203499;RBPJ:-0.0477162844177;NFE2L1:-0.0685137745105;GCM1,2:-0.0717402087379;CDC5L:-0.0850294228453;RUNX1..3:-0.0856506157887;ZFP161:-0.0975428719195;ZIC1..3:-0.135078758678;NFE2:-0.143520935019;NR1H4:-0.149267345744;FOXD3:-0.150315430814;ZNF384:-0.161149226065;FOSL2:-0.179328657929;TEF:-0.196367759171;SOX5:-0.202410474046;NR5A1,2:-0.255283225172;FOX{F1,F2,J1}:-0.265490557175;MEF2{A,B,C,D}:-0.268964105722;TOPORS:-0.292483548729;ESRRA:-0.292688458173;RFX1:-0.294345300875;CREB1:-0.295631661257;ETS1,2:-0.299001753024;IKZF1:-0.312723591219;RFX2..5_RFXANK_RFXAP:-0.333351500525;CRX:-0.337298341993;LMO2:-0.345905817213;PAX2:-0.347170265259;AHR_ARNT_ARNT2:-0.351691455246;PBX1:-0.357521625493;FOX{D1,D2}:-0.379383617835;POU5F1:-0.403578112705;E2F1..5:-0.419102602187;POU3F1..4:-0.431264001178;PAX8:-0.441211414587;NKX2-1,4:-0.460118782008;STAT5{A,B}:-0.466390661207;ATF2:-0.475170967161;BREu{core}:-0.4758150264;HOX{A5,B5}:-0.482465466018;POU6F1:-0.482751562591;JUN:-0.498399240605;GATA6:-0.501318588002;RXRA_VDR{dimer}:-0.503440407186;ZNF143:-0.511898103673;PAX4:-0.512718187108;ATF4:-0.514111143328;ELK1,4_GABP{A,B1}:-0.521948221552;FOXP1:-0.522393898835;ELF1,2,4:-0.53362880579;T:-0.535182772973;SPIB:-0.535464271897;AIRE:-0.563030551545;SPI1:-0.565854765488;NANOG:-0.585692409558;NRF1:-0.591053543395;CDX1,2,4:-0.596137217563;TLX2:-0.624487809822;EP300:-0.638908471454;MYOD1:-0.658347748039;TGIF1:-0.686565811615;ARID5B:-0.692114434618;FOXM1:-0.700366572463;CUX2:-0.730759241364;STAT1,3:-0.733292097507;SOX2:-0.746397283275;SOX{8,9,10}:-0.787718740806;AR:-0.814727370356;HIF1A:-0.828882720117;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849477369353;OCT4_SOX2{dimer}:-0.883446495889;NFY{A,B,C}:-0.908867358198;ZEB1:-0.920337121413;IKZF2:-0.938970953709;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.943183092192;FOXQ1:-0.976862215079;POU2F1..3:-1.00874979323;FOXN1:-1.0186216736;ALX1:-1.02425803096;SNAI1..3:-1.03792710942;FOXP3:-1.04147257539;ONECUT1,2:-1.12173062473;PITX1..3:-1.12328545115;POU1F1:-1.13518109727;ZBTB16:-1.15656421556;PAX6:-1.21064069048;VSX1,2:-1.60207564264 | |top_motifs=ZNF238:2.23120268032;ESR1:2.20077088531;TAL1_TCF{3,4,12}:1.56675570685;IRF1,2:1.55764858298;HES1:1.53086436786;NKX2-2,8:1.51169454215;SPZ1:1.4546573499;HMGA1,2:1.42690486448;GZF1:1.39426924362;NFIX:1.33181598779;IRF7:1.26132719643;TFAP4:1.21362263543;MYBL2:1.20292922238;TP53:1.19561515596;MAZ:1.17007001631;MAFB:1.15625226572;GLI1..3:1.15536010657;ALX4:1.14585102895;EBF1:1.14210214718;PAX3,7:1.12402212585;TFCP2:1.11585914126;FOXL1:1.09232357498;PATZ1:1.01225486177;LHX3,4:1.00516125503;TFDP1:0.925999130442;NFATC1..3:0.870330063134;KLF4:0.864116968888;TFAP2{A,C}:0.860593164822;FOXO1,3,4:0.859315713463;NKX2-3_NKX2-5:0.856336776221;PAX5:0.786140121167;SREBF1,2:0.771097844273;TEAD1:0.762373798208;PAX1,9:0.759092961888;NKX6-1,2:0.753632354159;TLX1..3_NFIC{dimer}:0.742238222229;HAND1,2:0.740717896137;NHLH1,2:0.733725647291;ZBTB6:0.731270530515;ATF6:0.68424070201;GTF2A1,2:0.673010829881;HMX1:0.668083540223;NKX3-1:0.58467357098;ZNF423:0.57928029673;YY1:0.573633888579;PRDM1:0.546878984576;UFEwm:0.535095721753;GTF2I:0.526342086275;DBP:0.507728701641;TBX4,5:0.487374690148;NFE2L2:0.477689525797;RXR{A,B,G}:0.459496917499;MTF1:0.457921871941;TFAP2B:0.452924964401;EVI1:0.438091549906;NANOG{mouse}:0.433672217137;SOX17:0.422413299598;PPARG:0.420712611352;MZF1:0.411426860741;GFI1:0.410523265967;HBP1_HMGB_SSRP1_UBTF:0.403884223195;PDX1:0.401264688145;NKX3-2:0.396817698209;HIC1:0.393523052041;MYB:0.346986605395;NR3C1:0.32210552749;FOXA2:0.319678017662;EGR1..3:0.304722166278;RREB1:0.297675719978;GATA4:0.296412383435;NR6A1:0.285267336103;LEF1_TCF7_TCF7L1,2:0.245267612557;CEBPA,B_DDIT3:0.244865294793;HSF1,2:0.241519440274;MYFfamily:0.23884093774;MTE{core}:0.238808610955;HOX{A6,A7,B6,B7}:0.227727747637;ZNF148:0.226146189303;SMAD1..7,9:0.223160230289;HLF:0.218584186911;NFIL3:0.195754977725;ADNP_IRX_SIX_ZHX:0.175986974389;GFI1B:0.175413733544;XBP1:0.169887086121;RORA:0.15737095577;SRF:0.153037498524;MED-1{core}:0.131403655653;TBP:0.124352369897;XCPE1{core}:0.0919756752386;PRRX1,2:0.0859007805813;REST:0.0829990758736;HOX{A4,D4}:0.0731624044184;FOX{I1,J2}:0.0695075634209;HNF4A_NR2F1,2:0.0569099822678;STAT2,4,6:0.0532205711126;DMAP1_NCOR{1,2}_SMARC:0.0528940515903;SP1:0.0421029767528;ATF5_CREB3:0.0411241292412;FOS_FOS{B,L1}_JUN{B,D}:0.0320037552997;HNF1A:0.015294463613;BACH2:0.0122783734455;BPTF:0.00968638788455;EN1,2:0.00836000687458;NFKB1_REL_RELA:-0.0162171359473;HOXA9_MEIS1:-0.0358795873106;bHLH_family:-0.0456628203499;RBPJ:-0.0477162844177;NFE2L1:-0.0685137745105;GCM1,2:-0.0717402087379;CDC5L:-0.0850294228453;RUNX1..3:-0.0856506157887;ZFP161:-0.0975428719195;ZIC1..3:-0.135078758678;NFE2:-0.143520935019;NR1H4:-0.149267345744;FOXD3:-0.150315430814;ZNF384:-0.161149226065;FOSL2:-0.179328657929;TEF:-0.196367759171;SOX5:-0.202410474046;NR5A1,2:-0.255283225172;FOX{F1,F2,J1}:-0.265490557175;MEF2{A,B,C,D}:-0.268964105722;TOPORS:-0.292483548729;ESRRA:-0.292688458173;RFX1:-0.294345300875;CREB1:-0.295631661257;ETS1,2:-0.299001753024;IKZF1:-0.312723591219;RFX2..5_RFXANK_RFXAP:-0.333351500525;CRX:-0.337298341993;LMO2:-0.345905817213;PAX2:-0.347170265259;AHR_ARNT_ARNT2:-0.351691455246;PBX1:-0.357521625493;FOX{D1,D2}:-0.379383617835;POU5F1:-0.403578112705;E2F1..5:-0.419102602187;POU3F1..4:-0.431264001178;PAX8:-0.441211414587;NKX2-1,4:-0.460118782008;STAT5{A,B}:-0.466390661207;ATF2:-0.475170967161;BREu{core}:-0.4758150264;HOX{A5,B5}:-0.482465466018;POU6F1:-0.482751562591;JUN:-0.498399240605;GATA6:-0.501318588002;RXRA_VDR{dimer}:-0.503440407186;ZNF143:-0.511898103673;PAX4:-0.512718187108;ATF4:-0.514111143328;ELK1,4_GABP{A,B1}:-0.521948221552;FOXP1:-0.522393898835;ELF1,2,4:-0.53362880579;T:-0.535182772973;SPIB:-0.535464271897;AIRE:-0.563030551545;SPI1:-0.565854765488;NANOG:-0.585692409558;NRF1:-0.591053543395;CDX1,2,4:-0.596137217563;TLX2:-0.624487809822;EP300:-0.638908471454;MYOD1:-0.658347748039;TGIF1:-0.686565811615;ARID5B:-0.692114434618;FOXM1:-0.700366572463;CUX2:-0.730759241364;STAT1,3:-0.733292097507;SOX2:-0.746397283275;SOX{8,9,10}:-0.787718740806;AR:-0.814727370356;HIF1A:-0.828882720117;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849477369353;OCT4_SOX2{dimer}:-0.883446495889;NFY{A,B,C}:-0.908867358198;ZEB1:-0.920337121413;IKZF2:-0.938970953709;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.943183092192;FOXQ1:-0.976862215079;POU2F1..3:-1.00874979323;FOXN1:-1.0186216736;ALX1:-1.02425803096;SNAI1..3:-1.03792710942;FOXP3:-1.04147257539;ONECUT1,2:-1.12173062473;PITX1..3:-1.12328545115;POU1F1:-1.13518109727;ZBTB16:-1.15656421556;PAX6:-1.21064069048;VSX1,2:-1.60207564264 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11222-116B7;search_select_hide=table117:FF:11222-116B7 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Fibroblast - Gingival, donor4 (GFH2) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10848 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10848
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10848
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.32 |
| 10 | 10 | 0.456 |
| 100 | 100 | 0.598 |
| 101 | 101 | 0.725 |
| 102 | 102 | 0.0385 |
| 103 | 103 | 0.58 |
| 104 | 104 | 0.221 |
| 105 | 105 | 0.638 |
| 106 | 106 | 0.16 |
| 107 | 107 | 0.046 |
| 108 | 108 | 0.535 |
| 109 | 109 | 0.992 |
| 11 | 11 | 0.963 |
| 110 | 110 | 0.649 |
| 111 | 111 | 0.0493 |
| 112 | 112 | 0.445 |
| 113 | 113 | 0.887 |
| 114 | 114 | 0.389 |
| 115 | 115 | 0.363 |
| 116 | 116 | 0.293 |
| 117 | 117 | 0.508 |
| 118 | 118 | 0.222 |
| 119 | 119 | 0.665 |
| 12 | 12 | 0.0102 |
| 120 | 120 | 0.35 |
| 121 | 121 | 0.264 |
| 122 | 122 | 0.0262 |
| 123 | 123 | 0.00442 |
| 124 | 124 | 0.286 |
| 125 | 125 | 0.641 |
| 126 | 126 | 0.54 |
| 127 | 127 | 0.439 |
| 128 | 128 | 0.0756 |
| 129 | 129 | 0.246 |
| 13 | 13 | 0.0248 |
| 130 | 130 | 0.281 |
| 131 | 131 | 0.569 |
| 132 | 132 | 0.197 |
| 133 | 133 | 0.171 |
| 134 | 134 | 0.0229 |
| 135 | 135 | 0.786 |
| 136 | 136 | 0.69 |
| 137 | 137 | 0.355 |
| 138 | 138 | 0.58 |
| 139 | 139 | 0.19 |
| 14 | 14 | 0.464 |
| 140 | 140 | 0.0429 |
| 141 | 141 | 0.0102 |
| 142 | 142 | 0.889 |
| 143 | 143 | 0.846 |
| 144 | 144 | 0.119 |
| 145 | 145 | 0.986 |
| 146 | 146 | 0.3 |
| 147 | 147 | 0.277 |
| 148 | 148 | 0.834 |
| 149 | 149 | 0.531 |
| 15 | 15 | 0.688 |
| 150 | 150 | 0.223 |
| 151 | 151 | 0.859 |
| 152 | 152 | 0.0314 |
| 153 | 153 | 0.661 |
| 154 | 154 | 0.518 |
| 155 | 155 | 0.00461 |
| 156 | 156 | 0.445 |
| 157 | 157 | 0.781 |
| 158 | 158 | 0.0551 |
| 159 | 159 | 0.469 |
| 16 | 16 | 0.151 |
| 160 | 160 | 0.595 |
| 161 | 161 | 0.979 |
| 162 | 162 | 0.126 |
| 163 | 163 | 0.754 |
| 164 | 164 | 0.541 |
| 165 | 165 | 0.664 |
| 166 | 166 | 0.00686 |
| 167 | 167 | 0.231 |
| 168 | 168 | 0.828 |
| 169 | 169 | 0.0788 |
| 17 | 17 | 0.921 |
| 18 | 18 | 0.123 |
| 19 | 19 | 0.00476 |
| 2 | 2 | 0.0715 |
| 20 | 20 | 0.14 |
| 21 | 21 | 0.484 |
| 22 | 22 | 0.39 |
| 23 | 23 | 0.155 |
| 24 | 24 | 0.814 |
| 25 | 25 | 0.138 |
| 26 | 26 | 0.666 |
| 27 | 27 | 0.537 |
| 28 | 28 | 0.505 |
| 29 | 29 | 0.172 |
| 3 | 3 | 0.566 |
| 30 | 30 | 0.0881 |
| 31 | 31 | 0.289 |
| 32 | 32 | 1.64388e-12 |
| 33 | 33 | 0.652 |
| 34 | 34 | 0.336 |
| 35 | 35 | 0.783 |
| 36 | 36 | 0.0402 |
| 37 | 37 | 0.623 |
| 38 | 38 | 0.537 |
| 39 | 39 | 0.568 |
| 4 | 4 | 0.0779 |
| 40 | 40 | 0.08 |
| 41 | 41 | 0.612 |
| 42 | 42 | 0.706 |
| 43 | 43 | 0.564 |
| 44 | 44 | 0.998 |
| 45 | 45 | 0.323 |
| 46 | 46 | 0.506 |
| 47 | 47 | 0.435 |
| 48 | 48 | 0.531 |
| 49 | 49 | 0.937 |
| 5 | 5 | 0.486 |
| 50 | 50 | 0.514 |
| 51 | 51 | 0.696 |
| 52 | 52 | 0.353 |
| 53 | 53 | 0.556 |
| 54 | 54 | 0.526 |
| 55 | 55 | 0.121 |
| 56 | 56 | 0.72 |
| 57 | 57 | 0.907 |
| 58 | 58 | 0.302 |
| 59 | 59 | 0.048 |
| 6 | 6 | 0.6 |
| 60 | 60 | 0.879 |
| 61 | 61 | 0.724 |
| 62 | 62 | 0.832 |
| 63 | 63 | 0.453 |
| 64 | 64 | 0.693 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.618 |
| 67 | 67 | 0.819 |
| 68 | 68 | 0.865 |
| 69 | 69 | 0.394 |
| 7 | 7 | 0.0973 |
| 70 | 70 | 0.434 |
| 71 | 71 | 0.605 |
| 72 | 72 | 0.639 |
| 73 | 73 | 0.168 |
| 74 | 74 | 0.242 |
| 75 | 75 | 0.417 |
| 76 | 76 | 0.982 |
| 77 | 77 | 0.21 |
| 78 | 78 | 0.526 |
| 79 | 79 | 0.00423 |
| 8 | 8 | 0.566 |
| 80 | 80 | 0.534 |
| 81 | 81 | 0.53 |
| 82 | 82 | 0.379 |
| 83 | 83 | 0.254 |
| 84 | 84 | 0.631 |
| 85 | 85 | 0.469 |
| 86 | 86 | 0.956 |
| 87 | 87 | 0.458 |
| 88 | 88 | 0.238 |
| 89 | 89 | 0.253 |
| 9 | 9 | 0.354 |
| 90 | 90 | 0.854 |
| 91 | 91 | 0.323 |
| 92 | 92 | 0.286 |
| 93 | 93 | 0.63 |
| 94 | 94 | 0.352 |
| 95 | 95 | 0.552 |
| 96 | 96 | 0.655 |
| 97 | 97 | 0.289 |
| 98 | 98 | 0.292 |
| 99 | 99 | 2.62935e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10848
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
