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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005732
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005732
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Line 54: Line 56:
|microRNAs=
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|microRNAs_nn=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11230
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.ATGTCA.11230
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.ATGTCA.11230
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11230
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11230
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.ATGTCA.11230
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.ATGTCA.11230
|name=Natural Killer Cells, donor1
|name=Natural Killer Cells, donor1
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|profile_rnaseq=
|profile_rnaseq=
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Line 80: Line 82:
|rna_tube_id=116C6
|rna_tube_id=116C6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.ATGTCA
|sample_age=47
|sample_age=47
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=RORA:4.54284170619;PAX3,7:3.87128400184;RUNX1..3:3.71473833468;CREB1:3.62516220857;ATF5_CREB3:3.50083091249;ATF4:3.42713696972;RFX2..5_RFXANK_RFXAP:3.25301354337;NFKB1_REL_RELA:2.98368455824;FOXO1,3,4:2.97329513557;FOX{D1,D2}:2.96774058542;T:2.92923002669;ELF1,2,4:2.90416625732;ETS1,2:2.74113497615;DMAP1_NCOR{1,2}_SMARC:2.65922060281;PAX2:2.59992724355;BPTF:2.56386926169;FOXN1:2.2906723776;TBX4,5:2.26163588883;RFX1:2.12691290293;TGIF1:2.11851634851;SPI1:2.11154620654;JUN:2.05658330079;FOX{F1,F2,J1}:1.90589620056;TLX2:1.80840314096;IRF1,2:1.77072984459;HMX1:1.76261447811;SPIB:1.74535098932;ATF2:1.6324684267;ATF6:1.58615782935;PITX1..3:1.40886017792;FOXP1:1.36483374814;FOX{I1,J2}:1.32814420657;NKX2-1,4:1.29923881037;HIF1A:1.2253645613;EP300:1.17991784776;FOSL2:1.16275434893;NFATC1..3:1.11604151996;FOS_FOS{B,L1}_JUN{B,D}:1.02219781072;HMGA1,2:0.967763875476;ZBTB16:0.966759448686;NANOG{mouse}:0.95500016144;BREu{core}:0.945372635986;IRF7:0.842114763137;LEF1_TCF7_TCF7L1,2:0.816278813916;PAX6:0.813257795089;BACH2:0.708037819354;IKZF2:0.696150384723;SREBF1,2:0.679652173062;FOXP3:0.667776590647;MAFB:0.667656631755;SOX2:0.659726805125;ZNF384:0.648107740381;NFIL3:0.640763281488;NFE2:0.639778752698;ELK1,4_GABP{A,B1}:0.635486765897;MYB:0.594802653735;SMAD1..7,9:0.561950372171;PAX4:0.522977413836;CDX1,2,4:0.448178264478;GATA6:0.365812077416;EGR1..3:0.349282013384;NKX6-1,2:0.330759635103;TFDP1:0.308253718498;STAT2,4,6:0.295850038061;CEBPA,B_DDIT3:0.235274466469;NFE2L1:0.18738506401;HLF:0.158961422958;RBPJ:0.14711791106;MYFfamily:0.111141622503;PDX1:0.111032405207;RREB1:0.0876750440215;HBP1_HMGB_SSRP1_UBTF:0.0861414977178;NFE2L2:0.0817217047857;NFY{A,B,C}:0.0331267686222;AHR_ARNT_ARNT2:0.0203089447346;PPARG:0.0174250194827;RXRA_VDR{dimer}:0.0120295822754;NANOG:-0.022531992828;GCM1,2:-0.110943428422;HOX{A6,A7,B6,B7}:-0.145303671584;FOXQ1:-0.221767937621;SOX5:-0.238650029298;STAT1,3:-0.24274418762;CRX:-0.244702775078;POU2F1..3:-0.329076463613;FOXL1:-0.335337834385;E2F1..5:-0.351941404592;TOPORS:-0.369867891346;GLI1..3:-0.433126127411;NRF1:-0.433921094613;AIRE:-0.434207578494;ZEB1:-0.447630929545;HOXA9_MEIS1:-0.450157459846;PBX1:-0.450483762171;ZFP161:-0.451184715643;SNAI1..3:-0.491318205558;PRRX1,2:-0.498114854138;MTE{core}:-0.513796188196;MED-1{core}:-0.517536215845;MYOD1:-0.534453168445;NKX3-1:-0.577913079392;CUX2:-0.581062184293;HSF1,2:-0.584710908721;SRF:-0.588514604228;XBP1:-0.604316252471;TAL1_TCF{3,4,12}:-0.6073801045;NFIX:-0.613113118696;HES1:-0.621327322803;PAX5:-0.642335251158;TFAP4:-0.644847746924;FOXD3:-0.648100762235;PATZ1:-0.650861953519;TFAP2B:-0.652754611785;NHLH1,2:-0.705515720092;DBP:-0.719023979973;MZF1:-0.761415166515;STAT5{A,B}:-0.765598314311;SPZ1:-0.77889311453;EVI1:-0.779799938546;HNF1A:-0.794758217689;HNF4A_NR2F1,2:-0.823075124417;SOX{8,9,10}:-0.839539787292;MTF1:-0.84203779726;NR5A1,2:-0.847074636953;NR1H4:-0.850410549119;MAZ:-0.85938291639;REST:-0.883811313835;bHLH_family:-0.895111515282;MEF2{A,B,C,D}:-0.89972933878;TFCP2:-0.908010895805;OCT4_SOX2{dimer}:-0.911938379544;GATA4:-0.912460044204;YY1:-0.944839484601;SP1:-0.987667043155;AR:-0.990852345062;LMO2:-1.00009145781;ZNF148:-1.01055227903;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01522386525;FOXA2:-1.01740249685;LHX3,4:-1.02269290169;TFAP2{A,C}:-1.02788129312;ZBTB6:-1.0455277388;ALX4:-1.07670335348;ESRRA:-1.12832431452;FOXM1:-1.13953455585;HIC1:-1.18437005189;ZNF143:-1.20555918128;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22976466061;ZNF423:-1.25486634992;ZNF238:-1.2746573615;NKX2-2,8:-1.2977149184;MYBL2:-1.3049857755;ZIC1..3:-1.33400263286;VSX1,2:-1.35562411238;ALX1:-1.36791881712;POU5F1:-1.37448755473;TBP:-1.376184528;GFI1:-1.3874997917;PAX8:-1.47210020173;XCPE1{core}:-1.48414775416;RXR{A,B,G}:-1.48633455545;SOX17:-1.58363368953;HOX{A5,B5}:-1.586818244;TP53:-1.59178712531;CDC5L:-1.6512822012;GTF2I:-1.73812675455;GTF2A1,2:-1.80524008862;GFI1B:-1.80774554157;EN1,2:-1.8630579372;TEAD1:-1.88908533263;ARID5B:-1.88913968363;NKX2-3_NKX2-5:-1.88995981251;HAND1,2:-1.91527620615;TLX1..3_NFIC{dimer}:-1.91581302623;ESR1:-1.95678197733;GZF1:-1.95779883154;POU1F1:-1.9578916231;UFEwm:-1.96608240252;PRDM1:-2.02268532768;TEF:-2.02479109574;POU6F1:-2.04696487437;HOX{A4,D4}:-2.15369130756;POU3F1..4:-2.18809074293;IKZF1:-2.38086878413;EBF1:-2.40546640124;KLF4:-2.46571274922;ADNP_IRX_SIX_ZHX:-2.47400756013;NKX3-2:-2.63544542823;PAX1,9:-2.72343148039;NR6A1:-2.72551060221;NR3C1:-2.91884518532;ONECUT1,2:-3.07519189978
|top_motifs=RORA:4.54284170619;PAX3,7:3.87128400184;RUNX1..3:3.71473833468;CREB1:3.62516220857;ATF5_CREB3:3.50083091249;ATF4:3.42713696972;RFX2..5_RFXANK_RFXAP:3.25301354337;NFKB1_REL_RELA:2.98368455824;FOXO1,3,4:2.97329513557;FOX{D1,D2}:2.96774058542;T:2.92923002669;ELF1,2,4:2.90416625732;ETS1,2:2.74113497615;DMAP1_NCOR{1,2}_SMARC:2.65922060281;PAX2:2.59992724355;BPTF:2.56386926169;FOXN1:2.2906723776;TBX4,5:2.26163588883;RFX1:2.12691290293;TGIF1:2.11851634851;SPI1:2.11154620654;JUN:2.05658330079;FOX{F1,F2,J1}:1.90589620056;TLX2:1.80840314096;IRF1,2:1.77072984459;HMX1:1.76261447811;SPIB:1.74535098932;ATF2:1.6324684267;ATF6:1.58615782935;PITX1..3:1.40886017792;FOXP1:1.36483374814;FOX{I1,J2}:1.32814420657;NKX2-1,4:1.29923881037;HIF1A:1.2253645613;EP300:1.17991784776;FOSL2:1.16275434893;NFATC1..3:1.11604151996;FOS_FOS{B,L1}_JUN{B,D}:1.02219781072;HMGA1,2:0.967763875476;ZBTB16:0.966759448686;NANOG{mouse}:0.95500016144;BREu{core}:0.945372635986;IRF7:0.842114763137;LEF1_TCF7_TCF7L1,2:0.816278813916;PAX6:0.813257795089;BACH2:0.708037819354;IKZF2:0.696150384723;SREBF1,2:0.679652173062;FOXP3:0.667776590647;MAFB:0.667656631755;SOX2:0.659726805125;ZNF384:0.648107740381;NFIL3:0.640763281488;NFE2:0.639778752698;ELK1,4_GABP{A,B1}:0.635486765897;MYB:0.594802653735;SMAD1..7,9:0.561950372171;PAX4:0.522977413836;CDX1,2,4:0.448178264478;GATA6:0.365812077416;EGR1..3:0.349282013384;NKX6-1,2:0.330759635103;TFDP1:0.308253718498;STAT2,4,6:0.295850038061;CEBPA,B_DDIT3:0.235274466469;NFE2L1:0.18738506401;HLF:0.158961422958;RBPJ:0.14711791106;MYFfamily:0.111141622503;PDX1:0.111032405207;RREB1:0.0876750440215;HBP1_HMGB_SSRP1_UBTF:0.0861414977178;NFE2L2:0.0817217047857;NFY{A,B,C}:0.0331267686222;AHR_ARNT_ARNT2:0.0203089447346;PPARG:0.0174250194827;RXRA_VDR{dimer}:0.0120295822754;NANOG:-0.022531992828;GCM1,2:-0.110943428422;HOX{A6,A7,B6,B7}:-0.145303671584;FOXQ1:-0.221767937621;SOX5:-0.238650029298;STAT1,3:-0.24274418762;CRX:-0.244702775078;POU2F1..3:-0.329076463613;FOXL1:-0.335337834385;E2F1..5:-0.351941404592;TOPORS:-0.369867891346;GLI1..3:-0.433126127411;NRF1:-0.433921094613;AIRE:-0.434207578494;ZEB1:-0.447630929545;HOXA9_MEIS1:-0.450157459846;PBX1:-0.450483762171;ZFP161:-0.451184715643;SNAI1..3:-0.491318205558;PRRX1,2:-0.498114854138;MTE{core}:-0.513796188196;MED-1{core}:-0.517536215845;MYOD1:-0.534453168445;NKX3-1:-0.577913079392;CUX2:-0.581062184293;HSF1,2:-0.584710908721;SRF:-0.588514604228;XBP1:-0.604316252471;TAL1_TCF{3,4,12}:-0.6073801045;NFIX:-0.613113118696;HES1:-0.621327322803;PAX5:-0.642335251158;TFAP4:-0.644847746924;FOXD3:-0.648100762235;PATZ1:-0.650861953519;TFAP2B:-0.652754611785;NHLH1,2:-0.705515720092;DBP:-0.719023979973;MZF1:-0.761415166515;STAT5{A,B}:-0.765598314311;SPZ1:-0.77889311453;EVI1:-0.779799938546;HNF1A:-0.794758217689;HNF4A_NR2F1,2:-0.823075124417;SOX{8,9,10}:-0.839539787292;MTF1:-0.84203779726;NR5A1,2:-0.847074636953;NR1H4:-0.850410549119;MAZ:-0.85938291639;REST:-0.883811313835;bHLH_family:-0.895111515282;MEF2{A,B,C,D}:-0.89972933878;TFCP2:-0.908010895805;OCT4_SOX2{dimer}:-0.911938379544;GATA4:-0.912460044204;YY1:-0.944839484601;SP1:-0.987667043155;AR:-0.990852345062;LMO2:-1.00009145781;ZNF148:-1.01055227903;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01522386525;FOXA2:-1.01740249685;LHX3,4:-1.02269290169;TFAP2{A,C}:-1.02788129312;ZBTB6:-1.0455277388;ALX4:-1.07670335348;ESRRA:-1.12832431452;FOXM1:-1.13953455585;HIC1:-1.18437005189;ZNF143:-1.20555918128;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22976466061;ZNF423:-1.25486634992;ZNF238:-1.2746573615;NKX2-2,8:-1.2977149184;MYBL2:-1.3049857755;ZIC1..3:-1.33400263286;VSX1,2:-1.35562411238;ALX1:-1.36791881712;POU5F1:-1.37448755473;TBP:-1.376184528;GFI1:-1.3874997917;PAX8:-1.47210020173;XCPE1{core}:-1.48414775416;RXR{A,B,G}:-1.48633455545;SOX17:-1.58363368953;HOX{A5,B5}:-1.586818244;TP53:-1.59178712531;CDC5L:-1.6512822012;GTF2I:-1.73812675455;GTF2A1,2:-1.80524008862;GFI1B:-1.80774554157;EN1,2:-1.8630579372;TEAD1:-1.88908533263;ARID5B:-1.88913968363;NKX2-3_NKX2-5:-1.88995981251;HAND1,2:-1.91527620615;TLX1..3_NFIC{dimer}:-1.91581302623;ESR1:-1.95678197733;GZF1:-1.95779883154;POU1F1:-1.9578916231;UFEwm:-1.96608240252;PRDM1:-2.02268532768;TEF:-2.02479109574;POU6F1:-2.04696487437;HOX{A4,D4}:-2.15369130756;POU3F1..4:-2.18809074293;IKZF1:-2.38086878413;EBF1:-2.40546640124;KLF4:-2.46571274922;ADNP_IRX_SIX_ZHX:-2.47400756013;NKX3-2:-2.63544542823;PAX1,9:-2.72343148039;NR6A1:-2.72551060221;NR3C1:-2.91884518532;ONECUT1,2:-3.07519189978
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11230-116C6;search_select_hide=table117:FF:11230-116C6
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Natural Killer Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10859
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage47 years old adult
sexmale
age47
cell typenatural killer cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNK725
catalog number3H100-50-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005732
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10859 CAGE DRX008370 DRR009242
Accession ID Hg19

Library idBAMCTSS
CNhs10859 DRZ000667 DRZ002052
Accession ID Hg38

Library idBAMCTSS
CNhs10859 DRZ012017 DRZ013402
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005732
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.ATGTCA sRNA-Seq DRX037156 DRR041522
Accession ID Hg19

Library idBAMCTSS
SRhi10010.ATGTCA DRZ007164


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.0781
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.202
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.128
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0781
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.22
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.527
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.773
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0781
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.411
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.847
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.144
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.842
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.581
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.144
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.527
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0781
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.202
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.144
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0418
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.875
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.758
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.00101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.501
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.376
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0088
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.583
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.592
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.202
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.739
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.376
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.043
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.443
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.209
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.859
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.528
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.707
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.144
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.144
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.779
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.173
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.109
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.0781
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.871
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.144
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.852
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.773
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.252
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.758
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10859

Jaspar motifP-value
MA0002.21.51098e-7
MA0003.10.488
MA0004.10.948
MA0006.10.189
MA0007.10.314
MA0009.10.00446
MA0014.10.841
MA0017.10.132
MA0018.23.04124e-10
MA0019.10.77
MA0024.10.677
MA0025.10.00471
MA0027.10.699
MA0028.10.00393
MA0029.10.584
MA0030.10.00253
MA0031.16.62906e-5
MA0035.20.67
MA0038.10.268
MA0039.20.423
MA0040.10.848
MA0041.10.305
MA0042.10.824
MA0043.12.18678e-8
MA0046.10.0425
MA0047.20.546
MA0048.10.954
MA0050.11.6634e-10
MA0051.12.18228e-4
MA0052.10.336
MA0055.10.527
MA0057.10.136
MA0058.10.937
MA0059.10.511
MA0060.10.174
MA0061.11.24487e-20
MA0062.22.86028e-15
MA0065.20.812
MA0066.10.486
MA0067.15.07221e-5
MA0068.10.807
MA0069.10.826
MA0070.10.343
MA0071.10.733
MA0072.10.00218
MA0073.10.535
MA0074.10.765
MA0076.10.00101
MA0077.10.284
MA0078.10.91
MA0079.20.835
MA0080.25.04126e-13
MA0081.14.01043e-4
MA0083.10.282
MA0084.10.14
MA0087.10.729
MA0088.10.202
MA0090.12.49064e-4
MA0091.10.257
MA0092.10.828
MA0093.10.865
MA0099.23.0888e-6
MA0100.10.561
MA0101.11.13079e-15
MA0102.20.00372
MA0103.10.155
MA0104.20.751
MA0105.14.2297e-11
MA0106.10.027
MA0107.11.42638e-15
MA0108.20.00567
MA0111.10.361
MA0112.20.157
MA0113.10.248
MA0114.10.131
MA0115.10.0568
MA0116.10.155
MA0117.10.0035
MA0119.10.173
MA0122.10.932
MA0124.10.209
MA0125.10.0739
MA0131.10.106
MA0135.10.255
MA0136.11.29e-21
MA0137.20.952
MA0138.20.00662
MA0139.10.952
MA0140.10.969
MA0141.10.101
MA0142.10.174
MA0143.10.139
MA0144.10.927
MA0145.10.0948
MA0146.11
MA0147.10.818
MA0148.10.643
MA0149.10.934
MA0150.10.00229
MA0152.10.0154
MA0153.10.0504
MA0154.10.677
MA0155.10.142
MA0156.19.86036e-19
MA0157.10.00628
MA0159.10.804
MA0160.10.911
MA0162.10.183
MA0163.10.0429
MA0164.10.803
MA0258.10.56
MA0259.10.868



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10859

Novel motifP-value
10.904
100.0169
1000.792
1010.56
1020.992
1030.798
1040.694
1050.402
1060.25
1070.038
1080.36
1090.857
110.891
1100.36
1110.536
1120.896
1130.277
1140.934
1150.215
1160.112
1170.0134
1180.469
1190.333
120.371
1200.192
1210.392
1220.648
1230.00365
1240.944
1250.593
1260.442
1270.764
1280.884
1290.252
130.5
1300.262
1310.273
1320.0845
1330.471
1340.831
1350.679
1360.874
1370.0231
1380.479
1390.18
140.475
1400.733
1410.875
1420.519
1430.00909
1440.879
1450.543
1460.551
1470.0226
1480.542
1490.121
150.301
1500.991
1510.443
1520.841
1530.893
1540.249
1550.101
1560.694
1570.687
1580.0133
1590.609
160.287
1600.0307
1610.924
1620.00736
1630.897
1640.173
1650.632
1660.572
1670.214
1680.719
1690.211
170.708
180.846
190.0298
20.139
200.178
210.551
220.314
230.994
240.776
250.189
260.763
270.489
280.394
290.128
30.729
300.0921
310.632
320.00241
330.365
340.518
350.431
360.0986
370.498
380.709
390.478
40.765
400.919
410.0387
420.544
430.445
440.492
450.163
460.911
470.963
480.864
490.285
50.482
500.523
510.922
520.869
530.357
540.968
550.313
560.776
570.614
580.206
590.189
60.774
600.521
610.326
620.335
630.637
640.912
650.561
660.447
670.615
680.606
690.576
70.559
700.28
710.24
720.24
730.528
740.952
750.0731
760.132
770.00315
780.983
790.893
80.215
800.00856
810.971
820.667
830.59
840.147
850.761
860.0495
870.894
880.725
890.00789
90.965
900.833
910.703
920.586
930.656
940.222
950.289
960.934
970.559
980.597
994.34782e-7



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10859


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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