FF:11276-116H7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004808 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004808 | |||
|accession_numbers=CAGE;DRX008389;DRR009261;DRZ000686;DRZ002071;DRZ012036;DRZ013421 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037238;DRR041604;DRZ007246 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.64!42.43!DLX5;;chr11:46299199..46299233,+!p1@CREB3L1!1.57!180.27!CREB3L1;;chrX:591524..591527,+!p1@SHOX!1.57!36.41!SHOX;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.37!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.52!36.41!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.30!ZBED1;;chr14:61116183..61116208,-!p1@SIX1!1.45!100.82!SIX1;;chr15:42749722..42749739,-!p2@ZFP106!1.45!48.15!ZFP106;;chr8:25902876..25902936,-!p1@EBF2!1.43!26.18!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.01!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.38!22.87!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.07!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.78!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.27!17.45!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.65!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.57!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!19.86!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.21!15.35!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!61.99!FOXD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.15!13.24!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.75!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!1.13!12.64!CREB3L1;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.04!HOXA7;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.19!FOXC2;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.44!DLX5;;chr1:119530636..119530653,-!p2@TBX15!1.07!10.83!TBX15;;chr7:27205136..27205164,-!p1@HOXA9!1.06!10.53!HOXA9;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.75!IRX5;;chr7:27213893..27213954,-!p1@HOXA10!1.04!9.93!HOXA10;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.53!PRRX1;;chr2:176973498..176973524,+!p1@HOXD10!1.00!9.03!HOXD10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.23!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.73!HOXA11;;chr15:67391010..67391046,+!p13@SMAD3!0.99!8.73!SMAD3;;chr1:8938709..8938720,-!p3@ENO1!0.98!425.84!ENO1;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.43!HOXD10;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.84!FOXD1;;chr10:28034739..28034756,-!p1@MKX!0.96!8.13!MKX;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.54!FOXC1;;chr1:119530706..119530736,-!p3@TBX15!0.95!7.82!TBX15;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.52!HOXA3;;chr10:64576105..64576133,-!p1@EGR2!0.92!15.35!EGR2;;chr7:44143978..44143989,+!p2@AEBP1!0.90!13.24!AEBP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.92!FOXC2;;chr20:39946361..39946379,-!p2@ZHX3!0.89!21.07!ZHX3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.89!7.22!GLIS1;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.62!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr2:176981526..176981543,+!p3@HOXD10!0.88!6.62!HOXD10;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.43!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.40!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.86!24.98!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.95!TWIST1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.32!SHOX2;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.39!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.72!HIF3A;;chr1:170632723..170632739,+!p8@PRRX1!0.83!5.72!PRRX1;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.52!EBF1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.42!HOXD8;;chr16:54320101..54320125,-!p4@IRX3!0.80!7.82!IRX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.47!ZFHX4;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.74!SMARCD3;;chr19:44037546..44037594,+!p1@ZNF575!0.79!11.14!ZNF575;;chr4:174451350..174451363,-!p3@HAND2!0.79!5.12!HAND2;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.12!BARX1;;chr16:54319010..54319041,-!p8@IRX3!0.79!5.12!IRX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.12!HOXC5;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.72!CREB3L1;;chr19:13106214..13106382,+!p1@NFIX!0.76!121.28!NFIX;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.82!HOXA11;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.82!RUNX1T1;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.09!TSC22D1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.73!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.05!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.74!6.02!IRX3;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.51!ZNF668;;chr2:176981546..176981557,+!p5@HOXD10!0.74!4.51!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.51!ZNF385D;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.51!HOPX;;chr6:108977520..108977534,+!p7@FOXO3!0.74!4.51!FOXO3;;chr7:27195867..27195893,-!p3@HOXA7!0.74!4.51!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.74!4.51!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.72!107.44!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.74!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.97!HMGA2;;chr16:54320158..54320200,-!p5@IRX3!0.72!6.32!IRX3;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!125.80!TSC22D3;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.32!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.71!4.82!SIX1;;chr7:150974206..150974255,-!p1@SMARCD3!0.70!28.59!SMARCD3;;chrX:1069602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| |expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.64!42.43!DLX5;;chr11:46299199..46299233,+!p1@CREB3L1!1.57!180.27!CREB3L1;;chrX:591524..591527,+!p1@SHOX!1.57!36.41!SHOX;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.37!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.52!36.41!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.30!ZBED1;;chr14:61116183..61116208,-!p1@SIX1!1.45!100.82!SIX1;;chr15:42749722..42749739,-!p2@ZFP106!1.45!48.15!ZFP106;;chr8:25902876..25902936,-!p1@EBF2!1.43!26.18!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.01!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.38!22.87!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.07!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.78!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.27!17.45!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.65!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.57!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!19.86!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.21!15.35!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!61.99!FOXD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.15!13.24!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.75!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!1.13!12.64!CREB3L1;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.04!HOXA7;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.19!FOXC2;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.44!DLX5;;chr1:119530636..119530653,-!p2@TBX15!1.07!10.83!TBX15;;chr7:27205136..27205164,-!p1@HOXA9!1.06!10.53!HOXA9;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.75!IRX5;;chr7:27213893..27213954,-!p1@HOXA10!1.04!9.93!HOXA10;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.53!PRRX1;;chr2:176973498..176973524,+!p1@HOXD10!1.00!9.03!HOXD10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.23!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.73!HOXA11;;chr15:67391010..67391046,+!p13@SMAD3!0.99!8.73!SMAD3;;chr1:8938709..8938720,-!p3@ENO1!0.98!425.84!ENO1;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.43!HOXD10;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.84!FOXD1;;chr10:28034739..28034756,-!p1@MKX!0.96!8.13!MKX;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.54!FOXC1;;chr1:119530706..119530736,-!p3@TBX15!0.95!7.82!TBX15;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.52!HOXA3;;chr10:64576105..64576133,-!p1@EGR2!0.92!15.35!EGR2;;chr7:44143978..44143989,+!p2@AEBP1!0.90!13.24!AEBP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.92!FOXC2;;chr20:39946361..39946379,-!p2@ZHX3!0.89!21.07!ZHX3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.89!7.22!GLIS1;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.62!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr2:176981526..176981543,+!p3@HOXD10!0.88!6.62!HOXD10;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.43!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.40!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.86!24.98!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.95!TWIST1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.32!SHOX2;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.39!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.72!HIF3A;;chr1:170632723..170632739,+!p8@PRRX1!0.83!5.72!PRRX1;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.52!EBF1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.42!HOXD8;;chr16:54320101..54320125,-!p4@IRX3!0.80!7.82!IRX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.47!ZFHX4;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.74!SMARCD3;;chr19:44037546..44037594,+!p1@ZNF575!0.79!11.14!ZNF575;;chr4:174451350..174451363,-!p3@HAND2!0.79!5.12!HAND2;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.12!BARX1;;chr16:54319010..54319041,-!p8@IRX3!0.79!5.12!IRX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.12!HOXC5;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.72!CREB3L1;;chr19:13106214..13106382,+!p1@NFIX!0.76!121.28!NFIX;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.82!HOXA11;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.82!RUNX1T1;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.09!TSC22D1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.73!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.05!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.74!6.02!IRX3;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.51!ZNF668;;chr2:176981546..176981557,+!p5@HOXD10!0.74!4.51!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.51!ZNF385D;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.51!HOPX;;chr6:108977520..108977534,+!p7@FOXO3!0.74!4.51!FOXO3;;chr7:27195867..27195893,-!p3@HOXA7!0.74!4.51!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.74!4.51!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.72!107.44!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.74!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.97!HMGA2;;chr16:54320158..54320200,-!p5@IRX3!0.72!6.32!IRX3;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!125.80!TSC22D3;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.32!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.71!4.82!SIX1;;chr7:150974206..150974255,-!p1@SMARCD3!0.70!28.59!SMARCD3;;chrX:1069602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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000335 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11276-116H7 | |id=FF:11276-116H7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000127;;FF:0000128 | ||
|is_obsolete= | |||
|library_id=CNhs11311 | |||
|library_id_phase_based=2:CNhs11311 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11276 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.ATGTCA.11276 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11276 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.ATGTCA.11276 | |||
|name=Osteoblast - differentiated, donor1 | |name=Osteoblast - differentiated, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11311,LSID767,release008,COMPLETED | |profile_hcage=CNhs11311,LSID767,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0460587266652653,0,0.0658069720772607,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0710897845194515,0,0,0,0,0,0,0,0,0.0781016221654845,0,0,0,0.204633286556638,0,0.0139891635369146,0.114259303421121,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0281183136319094,0,0,0,0,0,0,0,-0.0584468268118252,0.159543519372853,0,0.398761003955507,0.0571296517105605,0,0.0162239521834143,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.108132543304693,0.207136427759597,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA406D-R10f | |rna_catalog_number=CA406D-R10f | ||
Line 56: | Line 82: | ||
|rna_tube_id=116H7 | |rna_tube_id=116H7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.ATGTCA | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.8631982774044e-209!GO:0005737;cytoplasm;5.06094739263946e-183!GO:0043226;organelle;1.4169680504886e-155!GO:0043229;intracellular organelle;2.31092650110269e-155!GO:0043231;intracellular membrane-bound organelle;5.16880092093744e-155!GO:0043227;membrane-bound organelle;1.18535550687527e-154!GO:0044444;cytoplasmic part;1.0818109888872e-135!GO:0044422;organelle part;2.87634454788252e-108!GO:0044446;intracellular organelle part;4.86199835838666e-107!GO:0005515;protein binding;3.51188885209077e-77!GO:0032991;macromolecular complex;6.77911492078867e-77!GO:0030529;ribonucleoprotein complex;3.17831960472216e-72!GO:0044238;primary metabolic process;3.95809765946409e-72!GO:0044237;cellular metabolic process;1.50031803812448e-71!GO:0043170;macromolecule metabolic process;2.46542383519387e-66!GO:0005739;mitochondrion;8.55466312391109e-62!GO:0043233;organelle lumen;5.49901391551732e-59!GO:0031974;membrane-enclosed lumen;5.49901391551732e-59!GO:0003723;RNA binding;1.34835660916365e-53!GO:0044428;nuclear part;1.40889126905613e-51!GO:0031090;organelle membrane;3.87714276962952e-51!GO:0005634;nucleus;1.59289447546234e-48!GO:0005840;ribosome;4.20573740889276e-47!GO:0019538;protein metabolic process;2.21739673689557e-46!GO:0006412;translation;8.1413286765163e-45!GO:0015031;protein transport;1.18532568155519e-43!GO:0033036;macromolecule localization;7.4572870589875e-43!GO:0044429;mitochondrial part;6.92882635719853e-42!GO:0003735;structural constituent of ribosome;8.95862772880651e-42!GO:0016043;cellular component organization and biogenesis;8.95862772880651e-42!GO:0044260;cellular macromolecule metabolic process;1.20312385574393e-41!GO:0045184;establishment of protein localization;8.49640260157681e-41!GO:0008104;protein localization;2.16492679416983e-40!GO:0044267;cellular protein metabolic process;3.74130080706788e-40!GO:0009058;biosynthetic process;3.31510875354454e-39!GO:0005829;cytosol;5.99348069252238e-38!GO:0009059;macromolecule biosynthetic process;7.72184290945345e-38!GO:0043234;protein complex;2.38999821553558e-37!GO:0033279;ribosomal subunit;1.94481518911166e-36!GO:0031967;organelle envelope;5.31693146023547e-36!GO:0031975;envelope;1.25892134421005e-35!GO:0044249;cellular biosynthetic process;1.75924874649892e-35!GO:0006396;RNA processing;2.58850635773037e-35!GO:0010467;gene expression;3.56151503259786e-33!GO:0046907;intracellular transport;2.90057289757132e-32!GO:0031981;nuclear lumen;5.35984490706626e-32!GO:0043283;biopolymer metabolic process;9.99965913675882e-32!GO:0006886;intracellular protein transport;2.15131147993925e-29!GO:0016071;mRNA metabolic process;4.00358726081979e-29!GO:0005740;mitochondrial envelope;3.20326118677396e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.55917583269776e-27!GO:0031966;mitochondrial membrane;6.35354424406085e-27!GO:0008380;RNA splicing;1.43774205349932e-26!GO:0019866;organelle inner membrane;1.30467901626343e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.97882250743199e-25!GO:0006397;mRNA processing;7.44155713125455e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.25536976751441e-25!GO:0005743;mitochondrial inner membrane;1.30313140028809e-24!GO:0065003;macromolecular complex assembly;5.01697802109812e-24!GO:0044445;cytosolic part;3.24017189762719e-21!GO:0022607;cellular component assembly;3.5780657115157e-21!GO:0006119;oxidative phosphorylation;8.08018933402232e-21!GO:0051649;establishment of cellular localization;2.89952276972945e-20!GO:0005654;nucleoplasm;3.62909591714203e-20!GO:0051641;cellular localization;4.81726539692208e-20!GO:0005783;endoplasmic reticulum;5.50670110774294e-20!GO:0006457;protein folding;6.14536688231424e-20!GO:0015934;large ribosomal subunit;7.95762491156054e-20!GO:0006996;organelle organization and biogenesis;8.09276988242113e-20!GO:0005681;spliceosome;1.10655287237054e-19!GO:0012505;endomembrane system;3.01973238143455e-19!GO:0044455;mitochondrial membrane part;3.94289683341005e-19!GO:0048770;pigment granule;5.49871317935196e-19!GO:0042470;melanosome;5.49871317935196e-19!GO:0005794;Golgi apparatus;2.43945234933899e-18!GO:0043228;non-membrane-bound organelle;6.31179535774481e-18!GO:0043232;intracellular non-membrane-bound organelle;6.31179535774481e-18!GO:0015935;small ribosomal subunit;1.46054023004442e-17!GO:0016874;ligase activity;2.55608583557737e-17!GO:0031980;mitochondrial lumen;3.59732928165127e-17!GO:0005759;mitochondrial matrix;3.59732928165127e-17!GO:0008134;transcription factor binding;5.67656249622095e-17!GO:0044432;endoplasmic reticulum part;7.54219034420736e-17!GO:0044451;nucleoplasm part;9.70684357693717e-17!GO:0022618;protein-RNA complex assembly;5.73781057984899e-16!GO:0006512;ubiquitin cycle;2.1391056293732e-15!GO:0005746;mitochondrial respiratory chain;3.06181900240392e-15!GO:0044265;cellular macromolecule catabolic process;4.41094438858924e-15!GO:0016462;pyrophosphatase activity;5.10887287732948e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.76280739905565e-15!GO:0006605;protein targeting;6.11584270440308e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.47861932059903e-15!GO:0043285;biopolymer catabolic process;8.32863188347682e-15!GO:0008135;translation factor activity, nucleic acid binding;1.06829517878727e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46747276048021e-14!GO:0017111;nucleoside-triphosphatase activity;2.27810359369338e-14!GO:0051186;cofactor metabolic process;2.89954054846415e-14!GO:0009057;macromolecule catabolic process;3.09747721329294e-14!GO:0048193;Golgi vesicle transport;3.69394470297263e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.7906046229209e-14!GO:0003676;nucleic acid binding;5.31840783848427e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.90912488266387e-14!GO:0005730;nucleolus;8.85796274434415e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.07964828056128e-13!GO:0003954;NADH dehydrogenase activity;1.07964828056128e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.07964828056128e-13!GO:0051082;unfolded protein binding;1.09594044832407e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.10340093685097e-13!GO:0016192;vesicle-mediated transport;1.52140960074939e-13!GO:0019941;modification-dependent protein catabolic process;2.12276557619698e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.12276557619698e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.50069305220668e-13!GO:0044257;cellular protein catabolic process;2.55721753011818e-13!GO:0000166;nucleotide binding;2.63579283767128e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.803751278116e-13!GO:0030163;protein catabolic process;4.00429631203965e-13!GO:0016070;RNA metabolic process;4.87597912772829e-13!GO:0005761;mitochondrial ribosome;7.58245475678315e-13!GO:0000313;organellar ribosome;7.58245475678315e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.2572249802138e-12!GO:0042773;ATP synthesis coupled electron transport;4.2572249802138e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.9900732351886e-12!GO:0044248;cellular catabolic process;5.79933785419083e-12!GO:0003712;transcription cofactor activity;5.90490842069396e-12!GO:0005793;ER-Golgi intermediate compartment;5.97528533318037e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.97528533318037e-12!GO:0045271;respiratory chain complex I;5.97528533318037e-12!GO:0005747;mitochondrial respiratory chain complex I;5.97528533318037e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.94095653178324e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.2648949509308e-11!GO:0006259;DNA metabolic process;2.36524297152635e-11!GO:0043412;biopolymer modification;3.19053551447986e-11!GO:0005789;endoplasmic reticulum membrane;4.78322551001198e-11!GO:0006732;coenzyme metabolic process;5.21867777710825e-11!GO:0008565;protein transporter activity;5.45703205746339e-11!GO:0003743;translation initiation factor activity;6.35834126651019e-11!GO:0009055;electron carrier activity;7.09116824904328e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39824954296162e-10!GO:0000375;RNA splicing, via transesterification reactions;1.39824954296162e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39824954296162e-10!GO:0006413;translational initiation;2.64011495296081e-10!GO:0006464;protein modification process;3.99202637334995e-10!GO:0006446;regulation of translational initiation;5.67386465350693e-10!GO:0042254;ribosome biogenesis and assembly;7.30553072861567e-10!GO:0008639;small protein conjugating enzyme activity;1.02937960372769e-09!GO:0012501;programmed cell death;1.46579604377759e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.69849437823177e-09!GO:0004842;ubiquitin-protein ligase activity;1.80460525535803e-09!GO:0006913;nucleocytoplasmic transport;1.82646864107153e-09!GO:0031965;nuclear membrane;2.01126294085269e-09!GO:0009259;ribonucleotide metabolic process;2.85951397050384e-09!GO:0019787;small conjugating protein ligase activity;2.89569875681832e-09!GO:0006915;apoptosis;3.25071770384133e-09!GO:0006163;purine nucleotide metabolic process;3.6908603731981e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.83900782491205e-09!GO:0017038;protein import;3.84585695936693e-09!GO:0051169;nuclear transport;3.84585695936693e-09!GO:0005635;nuclear envelope;4.20471476964281e-09!GO:0017076;purine nucleotide binding;4.3337007589801e-09!GO:0005768;endosome;4.69561672148169e-09!GO:0032553;ribonucleotide binding;4.73518231607565e-09!GO:0032555;purine ribonucleotide binding;4.73518231607565e-09!GO:0009150;purine ribonucleotide metabolic process;4.92199977644389e-09!GO:0048475;coated membrane;8.55322118277762e-09!GO:0030117;membrane coat;8.55322118277762e-09!GO:0016604;nuclear body;9.80881739615898e-09!GO:0044431;Golgi apparatus part;1.02863618222664e-08!GO:0008219;cell death;1.14826298443466e-08!GO:0016265;death;1.14826298443466e-08!GO:0003924;GTPase activity;1.32548328427046e-08!GO:0006164;purine nucleotide biosynthetic process;1.44904493784775e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59646165066064e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.89077722769084e-08!GO:0005788;endoplasmic reticulum lumen;1.97661878807133e-08!GO:0048523;negative regulation of cellular process;2.54028897864566e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.59943681250657e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.6438928807236e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.6438928807236e-08!GO:0030120;vesicle coat;2.83566550294469e-08!GO:0030662;coated vesicle membrane;2.83566550294469e-08!GO:0009260;ribonucleotide biosynthetic process;2.96345915612963e-08!GO:0016881;acid-amino acid ligase activity;3.06514790698821e-08!GO:0043687;post-translational protein modification;4.1727350672086e-08!GO:0009141;nucleoside triphosphate metabolic process;4.26530345172509e-08!GO:0009060;aerobic respiration;4.54813919353758e-08!GO:0015986;ATP synthesis coupled proton transport;5.123714120618e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.123714120618e-08!GO:0045333;cellular respiration;5.52946462825428e-08!GO:0044453;nuclear membrane part;6.05375090924666e-08!GO:0006461;protein complex assembly;6.11897766315667e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.24030740944523e-08!GO:0004812;aminoacyl-tRNA ligase activity;8.24030740944523e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.24030740944523e-08!GO:0009056;catabolic process;8.92673276504517e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.27024922522717e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.28848637474662e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.28848637474662e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.29054969957981e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.29054969957981e-07!GO:0016491;oxidoreductase activity;1.36289865526576e-07!GO:0043038;amino acid activation;1.41890007204107e-07!GO:0006418;tRNA aminoacylation for protein translation;1.41890007204107e-07!GO:0043039;tRNA aminoacylation;1.41890007204107e-07!GO:0006399;tRNA metabolic process;1.75632984299188e-07!GO:0046034;ATP metabolic process;1.78307298439163e-07!GO:0003714;transcription corepressor activity;1.9541161228309e-07!GO:0050794;regulation of cellular process;2.11532189731628e-07!GO:0006366;transcription from RNA polymerase II promoter;2.14782870885711e-07!GO:0007049;cell cycle;2.93468836915897e-07!GO:0016607;nuclear speck;3.06985794822649e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.44716054186638e-07!GO:0019829;cation-transporting ATPase activity;3.47201069054102e-07!GO:0044440;endosomal part;3.71962011396505e-07!GO:0010008;endosome membrane;3.71962011396505e-07!GO:0048519;negative regulation of biological process;4.31407148559274e-07!GO:0005773;vacuole;4.40814524460024e-07!GO:0065002;intracellular protein transport across a membrane;4.40814524460024e-07!GO:0051246;regulation of protein metabolic process;4.80187053183298e-07!GO:0007005;mitochondrion organization and biogenesis;5.47964740530145e-07!GO:0051188;cofactor biosynthetic process;5.76361082355055e-07!GO:0016023;cytoplasmic membrane-bound vesicle;7.18184937862419e-07!GO:0006754;ATP biosynthetic process;7.51221155647294e-07!GO:0006753;nucleoside phosphate metabolic process;7.51221155647294e-07!GO:0031252;leading edge;8.4555420576652e-07!GO:0031988;membrane-bound vesicle;9.22668832137191e-07!GO:0008361;regulation of cell size;1.02580182267464e-06!GO:0005643;nuclear pore;1.10531518841481e-06!GO:0016049;cell growth;1.31065813208323e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.55753480229248e-06!GO:0005798;Golgi-associated vesicle;1.82292175816839e-06!GO:0005770;late endosome;2.19568175773025e-06!GO:0016564;transcription repressor activity;2.20294943988696e-06!GO:0006091;generation of precursor metabolites and energy;2.23036366615177e-06!GO:0006099;tricarboxylic acid cycle;2.23577977168532e-06!GO:0046356;acetyl-CoA catabolic process;2.23577977168532e-06!GO:0006364;rRNA processing;2.42885428310579e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.75954794197183e-06!GO:0051170;nuclear import;2.771635636746e-06!GO:0045786;negative regulation of progression through cell cycle;2.7862073055477e-06!GO:0006606;protein import into nucleus;2.79854354274812e-06!GO:0005525;GTP binding;2.97845435462636e-06!GO:0000139;Golgi membrane;2.98398788057252e-06!GO:0006974;response to DNA damage stimulus;3.03602353618151e-06!GO:0032446;protein modification by small protein conjugation;3.16748403808586e-06!GO:0051187;cofactor catabolic process;3.27741549058151e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.28151604854855e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.38293625595226e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.61803452062177e-06!GO:0009109;coenzyme catabolic process;3.91842779259204e-06!GO:0016567;protein ubiquitination;3.98156367239799e-06!GO:0001558;regulation of cell growth;4.11861656974833e-06!GO:0000323;lytic vacuole;4.17957282302708e-06!GO:0005764;lysosome;4.17957282302708e-06!GO:0016072;rRNA metabolic process;4.25384361867193e-06!GO:0000151;ubiquitin ligase complex;4.25384361867193e-06!GO:0046930;pore complex;4.25612318255702e-06!GO:0042623;ATPase activity, coupled;5.01279879983768e-06!GO:0005524;ATP binding;5.23579357494022e-06!GO:0016887;ATPase activity;5.97840460817836e-06!GO:0051726;regulation of cell cycle;6.01639671646925e-06!GO:0000074;regulation of progression through cell cycle;7.17458793524714e-06!GO:0032559;adenyl ribonucleotide binding;7.35331592464188e-06!GO:0042981;regulation of apoptosis;7.45225845394322e-06!GO:0006084;acetyl-CoA metabolic process;7.55129562127791e-06!GO:0043067;regulation of programmed cell death;7.60644000267083e-06!GO:0030554;adenyl nucleotide binding;7.7083656505895e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.00252058632253e-06!GO:0044262;cellular carbohydrate metabolic process;9.02005583610008e-06!GO:0045259;proton-transporting ATP synthase complex;1.05941985362989e-05!GO:0006323;DNA packaging;1.0899205010595e-05!GO:0050789;regulation of biological process;1.10706581644817e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.11750985209571e-05!GO:0031982;vesicle;1.11750985209571e-05!GO:0031410;cytoplasmic vesicle;1.1409609722961e-05!GO:0006916;anti-apoptosis;1.40858330209271e-05!GO:0043069;negative regulation of programmed cell death;1.4086071561396e-05!GO:0008026;ATP-dependent helicase activity;1.49327586904539e-05!GO:0016853;isomerase activity;1.54708614213173e-05!GO:0043566;structure-specific DNA binding;1.73910413413772e-05!GO:0003697;single-stranded DNA binding;1.82590362278663e-05!GO:0016563;transcription activator activity;1.86857228888146e-05!GO:0043066;negative regulation of apoptosis;2.06086450719168e-05!GO:0009108;coenzyme biosynthetic process;2.15174895280803e-05!GO:0000245;spliceosome assembly;2.20513031224776e-05!GO:0005762;mitochondrial large ribosomal subunit;2.20513031224776e-05!GO:0000315;organellar large ribosomal subunit;2.20513031224776e-05!GO:0003713;transcription coactivator activity;2.24499688908891e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.64416308461684e-05!GO:0009117;nucleotide metabolic process;2.88079254176754e-05!GO:0005667;transcription factor complex;2.92600826169473e-05!GO:0006613;cotranslational protein targeting to membrane;3.04965047604405e-05!GO:0008092;cytoskeletal protein binding;3.08031759977732e-05!GO:0006752;group transfer coenzyme metabolic process;3.17973023089654e-05!GO:0032561;guanyl ribonucleotide binding;3.2213148620171e-05!GO:0019001;guanyl nucleotide binding;3.2213148620171e-05!GO:0005905;coated pit;3.27552171262117e-05!GO:0050657;nucleic acid transport;3.61826396292971e-05!GO:0051236;establishment of RNA localization;3.61826396292971e-05!GO:0050658;RNA transport;3.61826396292971e-05!GO:0006403;RNA localization;3.74386996480654e-05!GO:0008654;phospholipid biosynthetic process;3.7507692969583e-05!GO:0030867;rough endoplasmic reticulum membrane;3.81524283604314e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.0192231632442e-05!GO:0005048;signal sequence binding;4.03919177583963e-05!GO:0004386;helicase activity;4.46735000015106e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.21841860918091e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.3392413319027e-05!GO:0022402;cell cycle process;5.51678197732142e-05!GO:0009719;response to endogenous stimulus;5.60316839656364e-05!GO:0004298;threonine endopeptidase activity;5.74877282250225e-05!GO:0019867;outer membrane;6.11871659044727e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.09747802300882e-05!GO:0016859;cis-trans isomerase activity;7.10212101659373e-05!GO:0030133;transport vesicle;7.56862397946474e-05!GO:0051789;response to protein stimulus;7.56862397946474e-05!GO:0006986;response to unfolded protein;7.56862397946474e-05!GO:0031324;negative regulation of cellular metabolic process;7.63770061005683e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.71055465082657e-05!GO:0045454;cell redox homeostasis;7.80502450374651e-05!GO:0040008;regulation of growth;7.97299318771401e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.97299318771401e-05!GO:0031968;organelle outer membrane;8.23358587758952e-05!GO:0051427;hormone receptor binding;9.80753119942904e-05!GO:0006281;DNA repair;0.000101744660292005!GO:0005769;early endosome;0.000106233927018222!GO:0016568;chromatin modification;0.000106427479173828!GO:0016787;hydrolase activity;0.000157228029182402!GO:0016740;transferase activity;0.00016280659220078!GO:0005741;mitochondrial outer membrane;0.000175247011077973!GO:0009892;negative regulation of metabolic process;0.00020212641968787!GO:0035257;nuclear hormone receptor binding;0.000206119529535741!GO:0043021;ribonucleoprotein binding;0.000208147079817109!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000212447201490497!GO:0007050;cell cycle arrest;0.000212447201490497!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000232376846870982!GO:0003724;RNA helicase activity;0.000241217582021497!GO:0030029;actin filament-based process;0.000287764619170904!GO:0006793;phosphorus metabolic process;0.000287764619170904!GO:0006796;phosphate metabolic process;0.000287764619170904!GO:0030663;COPI coated vesicle membrane;0.000309899833933655!GO:0030126;COPI vesicle coat;0.000309899833933655!GO:0019899;enzyme binding;0.000319307469087255!GO:0005791;rough endoplasmic reticulum;0.000363854653791491!GO:0005885;Arp2/3 protein complex;0.000423290344549367!GO:0065004;protein-DNA complex assembly;0.00044542213033326!GO:0046474;glycerophospholipid biosynthetic process;0.0004869720491226!GO:0030137;COPI-coated vesicle;0.000520947463002033!GO:0051276;chromosome organization and biogenesis;0.000526084921086589!GO:0008250;oligosaccharyl transferase complex;0.000585154080929889!GO:0051028;mRNA transport;0.000637665932783243!GO:0030118;clathrin coat;0.000654335903642786!GO:0043623;cellular protein complex assembly;0.000666235690741275!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000681629556422487!GO:0007264;small GTPase mediated signal transduction;0.000718752553885222!GO:0004576;oligosaccharyl transferase activity;0.000734490270048141!GO:0003899;DNA-directed RNA polymerase activity;0.000787145259726002!GO:0006839;mitochondrial transport;0.000857141302231014!GO:0006612;protein targeting to membrane;0.000867408361388708!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000877444336838125!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000973468481027678!GO:0006333;chromatin assembly or disassembly;0.00102591349622922!GO:0019843;rRNA binding;0.00104213815524082!GO:0000314;organellar small ribosomal subunit;0.00105415617726719!GO:0005763;mitochondrial small ribosomal subunit;0.00105415617726719!GO:0051920;peroxiredoxin activity;0.00109750124335907!GO:0016310;phosphorylation;0.00110641845628708!GO:0043284;biopolymer biosynthetic process;0.00114315196543169!GO:0016481;negative regulation of transcription;0.00119021052387898!GO:0016779;nucleotidyltransferase activity;0.00123330156968042!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00126609080623047!GO:0030027;lamellipodium;0.00134389900193209!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0013739790707479!GO:0019222;regulation of metabolic process;0.00141588627586445!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00144069051920615!GO:0030132;clathrin coat of coated pit;0.00144606294313479!GO:0006509;membrane protein ectodomain proteolysis;0.00147843834019898!GO:0033619;membrane protein proteolysis;0.00147843834019898!GO:0006891;intra-Golgi vesicle-mediated transport;0.00151365780208068!GO:0016044;membrane organization and biogenesis;0.00157394987707883!GO:0006626;protein targeting to mitochondrion;0.00160183830472902!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00173093882454511!GO:0043681;protein import into mitochondrion;0.00173979523187762!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00180309111335294!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00186069658096814!GO:0048522;positive regulation of cellular process;0.00188192502139474!GO:0030658;transport vesicle membrane;0.00189279908240979!GO:0035258;steroid hormone receptor binding;0.00195185918946391!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00204896268011717!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00204896268011717!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00204896268011717!GO:0008186;RNA-dependent ATPase activity;0.00207341120366489!GO:0001726;ruffle;0.00210336865249283!GO:0005774;vacuolar membrane;0.00225425202421749!GO:0018196;peptidyl-asparagine modification;0.00226652888195627!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00226652888195627!GO:0007006;mitochondrial membrane organization and biogenesis;0.00265431932341598!GO:0000059;protein import into nucleus, docking;0.00270399517708235!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00277145241265728!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.002772168448982!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00317788839814101!GO:0043488;regulation of mRNA stability;0.00322307299028538!GO:0043487;regulation of RNA stability;0.00322307299028538!GO:0046489;phosphoinositide biosynthetic process;0.00322979474673437!GO:0004177;aminopeptidase activity;0.00326743071858057!GO:0003746;translation elongation factor activity;0.0033583899699624!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00338337418371351!GO:0031072;heat shock protein binding;0.00345888090000742!GO:0000278;mitotic cell cycle;0.00396321787730434!GO:0030176;integral to endoplasmic reticulum membrane;0.00416602278891533!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00419749133195107!GO:0007243;protein kinase cascade;0.00437140593802313!GO:0031902;late endosome membrane;0.0044088357256593!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00442120758386753!GO:0048471;perinuclear region of cytoplasm;0.00455650228999592!GO:0046467;membrane lipid biosynthetic process;0.00461890344031772!GO:0048500;signal recognition particle;0.00471225300441188!GO:0006414;translational elongation;0.00495133295351341!GO:0051252;regulation of RNA metabolic process;0.00495873301722345!GO:0004004;ATP-dependent RNA helicase activity;0.00506107280262217!GO:0008154;actin polymerization and/or depolymerization;0.00508881545428346!GO:0003779;actin binding;0.00510924405300363!GO:0006082;organic acid metabolic process;0.00510924405300363!GO:0017166;vinculin binding;0.00512252319310482!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00518234454144692!GO:0019752;carboxylic acid metabolic process;0.00519177185877341!GO:0065007;biological regulation;0.00520436068345787!GO:0005813;centrosome;0.00523308009650813!GO:0030134;ER to Golgi transport vesicle;0.00568488495168429!GO:0033673;negative regulation of kinase activity;0.00569281024394016!GO:0006469;negative regulation of protein kinase activity;0.00569281024394016!GO:0030660;Golgi-associated vesicle membrane;0.00569281024394016!GO:0006260;DNA replication;0.00594846828258421!GO:0006650;glycerophospholipid metabolic process;0.00595990226671093!GO:0048487;beta-tubulin binding;0.0061126508576128!GO:0044437;vacuolar part;0.00617367721569233!GO:0051287;NAD binding;0.00624600175243597!GO:0005765;lysosomal membrane;0.00664625387045154!GO:0000049;tRNA binding;0.00669282400708942!GO:0051329;interphase of mitotic cell cycle;0.00687869652911135!GO:0030127;COPII vesicle coat;0.00690687511107934!GO:0012507;ER to Golgi transport vesicle membrane;0.00690687511107934!GO:0031418;L-ascorbic acid binding;0.00695591738448071!GO:0006354;RNA elongation;0.00711020768655886!GO:0006740;NADPH regeneration;0.00731755331885599!GO:0006098;pentose-phosphate shunt;0.00731755331885599!GO:0007040;lysosome organization and biogenesis;0.00731755331885599!GO:0015631;tubulin binding;0.00755451432724668!GO:0030521;androgen receptor signaling pathway;0.00755773634419831!GO:0003711;transcription elongation regulator activity;0.00776285242411962!GO:0030880;RNA polymerase complex;0.00776285242411962!GO:0005869;dynactin complex;0.00788952262664291!GO:0008139;nuclear localization sequence binding;0.00788952262664291!GO:0030119;AP-type membrane coat adaptor complex;0.00790238844877885!GO:0006979;response to oxidative stress;0.00795748398338177!GO:0008286;insulin receptor signaling pathway;0.00795985414653649!GO:0008180;signalosome;0.00797499137823538!GO:0045045;secretory pathway;0.00798426087579809!GO:0009165;nucleotide biosynthetic process;0.00815251789383139!GO:0007033;vacuole organization and biogenesis;0.00815251789383139!GO:0003729;mRNA binding;0.00832474986514714!GO:0051128;regulation of cellular component organization and biogenesis;0.00860412806502681!GO:0022890;inorganic cation transmembrane transporter activity;0.00872330079986234!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00903633061518648!GO:0015399;primary active transmembrane transporter activity;0.00903633061518648!GO:0001527;microfibril;0.00912147289926288!GO:0016197;endosome transport;0.00919402206086887!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0094404898600372!GO:0005815;microtubule organizing center;0.00948176267192041!GO:0003690;double-stranded DNA binding;0.00951354568450208!GO:0050662;coenzyme binding;0.00971250633066843!GO:0051168;nuclear export;0.00971250633066843!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00983515646009233!GO:0045047;protein targeting to ER;0.00983515646009233!GO:0045792;negative regulation of cell size;0.00987021469503643!GO:0008610;lipid biosynthetic process;0.0107516691505668!GO:0000785;chromatin;0.0111796813034436!GO:0051540;metal cluster binding;0.0113498962922516!GO:0051536;iron-sulfur cluster binding;0.0113498962922516!GO:0005520;insulin-like growth factor binding;0.0114450210786175!GO:0051087;chaperone binding;0.0115386011580534!GO:0015992;proton transport;0.0115776519760835!GO:0030145;manganese ion binding;0.0117077341424152!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0117077341424152!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0117077341424152!GO:0006402;mRNA catabolic process;0.011747650938504!GO:0019318;hexose metabolic process;0.0118105810853407!GO:0051348;negative regulation of transferase activity;0.0120620036922041!GO:0006383;transcription from RNA polymerase III promoter;0.0123208747490555!GO:0031543;peptidyl-proline dioxygenase activity;0.0123208747490555!GO:0030308;negative regulation of cell growth;0.0123549510798342!GO:0008312;7S RNA binding;0.012387684822262!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0123931009547001!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0123931009547001!GO:0006818;hydrogen transport;0.0124470329565446!GO:0005975;carbohydrate metabolic process;0.0125102654351441!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0129480227729793!GO:0030131;clathrin adaptor complex;0.0129719773447476!GO:0007010;cytoskeleton organization and biogenesis;0.0130369695839847!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0131678535788206!GO:0050811;GABA receptor binding;0.0131678535788206!GO:0005996;monosaccharide metabolic process;0.0133213585762483!GO:0006334;nucleosome assembly;0.0133585833642734!GO:0005862;muscle thin filament tropomyosin;0.0134951659644125!GO:0048468;cell development;0.0135187229560845!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0137087812670646!GO:0015002;heme-copper terminal oxidase activity;0.0137087812670646!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0137087812670646!GO:0004129;cytochrome-c oxidase activity;0.0137087812670646!GO:0051325;interphase;0.0143396564585095!GO:0006595;polyamine metabolic process;0.0143834921381768!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0145846363905395!GO:0030125;clathrin vesicle coat;0.0148836928918976!GO:0030665;clathrin coated vesicle membrane;0.0148836928918976!GO:0043022;ribosome binding;0.0149112061208449!GO:0051539;4 iron, 4 sulfur cluster binding;0.0151447981673513!GO:0035035;histone acetyltransferase binding;0.015348991637271!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.015348991637271!GO:0000428;DNA-directed RNA polymerase complex;0.015348991637271!GO:0045941;positive regulation of transcription;0.015348991637271!GO:0030041;actin filament polymerization;0.015439041574357!GO:0006892;post-Golgi vesicle-mediated transport;0.0155255720956396!GO:0006007;glucose catabolic process;0.0155255720956396!GO:0046483;heterocycle metabolic process;0.0156452907308436!GO:0031497;chromatin assembly;0.0156605090001885!GO:0045936;negative regulation of phosphate metabolic process;0.0158369399991715!GO:0050681;androgen receptor binding;0.0158369399991715!GO:0000096;sulfur amino acid metabolic process;0.0158566364811146!GO:0015630;microtubule cytoskeleton;0.0161286148928759!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0162981684540027!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0165452693058852!GO:0016860;intramolecular oxidoreductase activity;0.0166273656048714!GO:0030518;steroid hormone receptor signaling pathway;0.0167038657346015!GO:0065009;regulation of a molecular function;0.0168383081340019!GO:0006497;protein amino acid lipidation;0.0173943882490823!GO:0008652;amino acid biosynthetic process;0.0175399763038143!GO:0019798;procollagen-proline dioxygenase activity;0.0185295293777534!GO:0031901;early endosome membrane;0.0185841260357974!GO:0005684;U2-dependent spliceosome;0.0187230642600685!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0189667602848248!GO:0033043;regulation of organelle organization and biogenesis;0.0189667602848248!GO:0006289;nucleotide-excision repair;0.0193118404216396!GO:0030659;cytoplasmic vesicle membrane;0.0194887537619041!GO:0045892;negative regulation of transcription, DNA-dependent;0.0200028644025473!GO:0006118;electron transport;0.0208260005268622!GO:0031529;ruffle organization and biogenesis;0.0208260005268622!GO:0005832;chaperonin-containing T-complex;0.0209420140486901!GO:0030384;phosphoinositide metabolic process;0.0210934326138398!GO:0045893;positive regulation of transcription, DNA-dependent;0.0215807075185613!GO:0005583;fibrillar collagen;0.0215807075185613!GO:0016408;C-acyltransferase activity;0.0218411698705534!GO:0007265;Ras protein signal transduction;0.0221483236219159!GO:0000209;protein polyubiquitination;0.0223452601446157!GO:0051098;regulation of binding;0.0228263384344983!GO:0007034;vacuolar transport;0.0229176352732182!GO:0032507;maintenance of cellular protein localization;0.0231628302417482!GO:0030503;regulation of cell redox homeostasis;0.0237889433093322!GO:0007160;cell-matrix adhesion;0.0240897479371557!GO:0000902;cell morphogenesis;0.0241912602054199!GO:0032989;cellular structure morphogenesis;0.0241912602054199!GO:0043433;negative regulation of transcription factor activity;0.0244063707170685!GO:0016126;sterol biosynthetic process;0.0246606306838194!GO:0008632;apoptotic program;0.0248038690104582!GO:0006778;porphyrin metabolic process;0.0251715856710705!GO:0033013;tetrapyrrole metabolic process;0.0251715856710705!GO:0051235;maintenance of localization;0.0259784869107042!GO:0006607;NLS-bearing substrate import into nucleus;0.0260947098003903!GO:0008147;structural constituent of bone;0.0261209859797214!GO:0006672;ceramide metabolic process;0.0265261097259003!GO:0006401;RNA catabolic process;0.0265885451822223!GO:0031589;cell-substrate adhesion;0.0265885451822223!GO:0006506;GPI anchor biosynthetic process;0.0266389786804019!GO:0003684;damaged DNA binding;0.0274276790639705!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0274276790639705!GO:0045926;negative regulation of growth;0.0274682591635208!GO:0031625;ubiquitin protein ligase binding;0.0278739533961677!GO:0005586;collagen type III;0.0280330335790591!GO:0006376;mRNA splice site selection;0.0282030900394207!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0282030900394207!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0282032508474972!GO:0009303;rRNA transcription;0.0282032508474972!GO:0008022;protein C-terminus binding;0.0284060916578997!GO:0006520;amino acid metabolic process;0.0284495917643864!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0287345750503787!GO:0004722;protein serine/threonine phosphatase activity;0.0301903776474618!GO:0048518;positive regulation of biological process;0.0303227932577868!GO:0003756;protein disulfide isomerase activity;0.0306652890434402!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0306652890434402!GO:0044433;cytoplasmic vesicle part;0.0307507138323651!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0309363595061066!GO:0046519;sphingoid metabolic process;0.0314217112688304!GO:0051101;regulation of DNA binding;0.0314783072121395!GO:0000339;RNA cap binding;0.0319102744868449!GO:0006790;sulfur metabolic process;0.0326450621361109!GO:0042326;negative regulation of phosphorylation;0.0329171379371312!GO:0007041;lysosomal transport;0.032979413982074!GO:0006739;NADP metabolic process;0.0340379910719316!GO:0045185;maintenance of protein localization;0.0343346163916785!GO:0030508;thiol-disulfide exchange intermediate activity;0.0343982051822476!GO:0007021;tubulin folding;0.0348092892118528!GO:0006505;GPI anchor metabolic process;0.0348589027972471!GO:0022408;negative regulation of cell-cell adhesion;0.0350578942687173!GO:0032940;secretion by cell;0.0357406139188923!GO:0048037;cofactor binding;0.0357406139188923!GO:0006352;transcription initiation;0.0361690464631658!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0367892699324053!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0367892699324053!GO:0008047;enzyme activator activity;0.0369223616091569!GO:0051059;NF-kappaB binding;0.0375077964619082!GO:0005096;GTPase activator activity;0.039454142155639!GO:0008287;protein serine/threonine phosphatase complex;0.0395690130284941!GO:0003923;GPI-anchor transamidase activity;0.0400677147688018!GO:0016255;attachment of GPI anchor to protein;0.0400677147688018!GO:0042765;GPI-anchor transamidase complex;0.0400677147688018!GO:0006807;nitrogen compound metabolic process;0.0403134592709805!GO:0000082;G1/S transition of mitotic cell cycle;0.0405770362760957!GO:0044452;nucleolar part;0.0407405760119161!GO:0004364;glutathione transferase activity;0.0409856693005636!GO:0042168;heme metabolic process;0.0412003690046344!GO:0042158;lipoprotein biosynthetic process;0.0418271863393868!GO:0043492;ATPase activity, coupled to movement of substances;0.04200709417976!GO:0042802;identical protein binding;0.0420357127501435!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0420357127501435!GO:0016791;phosphoric monoester hydrolase activity;0.0420724404088086!GO:0006779;porphyrin biosynthetic process;0.0421652166354287!GO:0033014;tetrapyrrole biosynthetic process;0.0421652166354287!GO:0005694;chromosome;0.0422178590920511!GO:0006897;endocytosis;0.0436876845774071!GO:0010324;membrane invagination;0.0436876845774071!GO:0030911;TPR domain binding;0.0440427231445559!GO:0051651;maintenance of cellular localization;0.0443830203655367!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0444710790912741!GO:0001953;negative regulation of cell-matrix adhesion;0.0445164563425615!GO:0008033;tRNA processing;0.044533631222819!GO:0005581;collagen;0.0446485902050983!GO:0016251;general RNA polymerase II transcription factor activity;0.0449767750442709!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.045228583018263!GO:0042585;germinal vesicle;0.0458526833826275!GO:0016272;prefoldin complex;0.0461158152445843!GO:0031124;mRNA 3'-end processing;0.0464615261925009!GO:0001872;zymosan binding;0.046694709609892!GO:0001878;response to yeast;0.046694709609892!GO:0031301;integral to organelle membrane;0.0468197558353626!GO:0005801;cis-Golgi network;0.0470095157096617!GO:0016363;nuclear matrix;0.0470919760140914!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0474753610729547!GO:0004860;protein kinase inhibitor activity;0.0474753610729547!GO:0006417;regulation of translation;0.0479310788651803!GO:0032984;macromolecular complex disassembly;0.0482196999021385!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0483551290871659!GO:0010257;NADH dehydrogenase complex assembly;0.0483551290871659!GO:0033108;mitochondrial respiratory chain complex assembly;0.0483551290871659!GO:0031323;regulation of cellular metabolic process;0.0487794068744545!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0493909091036745!GO:0001952;regulation of cell-matrix adhesion;0.0496024080867042 | |||
|sample_id=11276 | |sample_id=11276 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 105: | ||
|sample_tissue=bone | |sample_tissue=bone | ||
|top_motifs=TAL1_TCF{3,4,12}:1.79573057455;HES1:1.67144441149;ATF6:1.49829935806;NFATC1..3:1.42400256256;RXRA_VDR{dimer}:1.33463641501;MAFB:1.31035014329;ZNF238:1.25790846526;ZNF423:1.24263888073;HOX{A5,B5}:1.23229033243;HIF1A:1.22424207249;GZF1:1.21026701444;GLI1..3:1.17242993482;FOXL1:1.09644477638;GTF2A1,2:1.07616203431;ZNF148:1.03914509208;NR3C1:1.0085505276;NANOG{mouse}:1.00491124092;MYBL2:0.992286554003;ESR1:0.984857418737;HAND1,2:0.9822028549;TLX1..3_NFIC{dimer}:0.969732376377;IKZF1:0.961564346026;TFAP4:0.951100599804;TEAD1:0.947298940612;GCM1,2:0.905060188892;TFAP2{A,C}:0.901150902996;EBF1:0.876245629542;NFE2L1:0.870436603172;SRF:0.869159002994;STAT5{A,B}:0.85963984986;GTF2I:0.8475425191;EP300:0.839589799938;MTE{core}:0.819232542602;NKX2-3_NKX2-5:0.786895243394;ZBTB6:0.781512810857;HOX{A6,A7,B6,B7}:0.772617407229;TP53:0.765919469926;GFI1B:0.758114670528;HIC1:0.747795572354;HMGA1,2:0.742441810448;NFIX:0.725526177223;EVI1:0.722524614912;DBP:0.721592785485;SMAD1..7,9:0.717084060535;MZF1:0.686768323787;PRDM1:0.683108681826;PATZ1:0.681150577175;PAX5:0.673883561891;NKX6-1,2:0.63865287564;XBP1:0.627798716639;TFAP2B:0.626084948997;MAZ:0.625043647794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.622264409939;bHLH_family:0.609059557813;SPZ1:0.587166465711;HMX1:0.557612555153;KLF4:0.543054411617;ADNP_IRX_SIX_ZHX:0.533999165492;MYFfamily:0.500302866362;NR5A1,2:0.484065639145;PAX1,9:0.479514761811;NR6A1:0.468611803059;HLF:0.459262895239;TBX4,5:0.458895336502;ZIC1..3:0.455792817707;LHX3,4:0.450723327812;YY1:0.444839946478;TFCP2:0.432144146529;FOX{I1,J2}:0.431786287253;FOX{F1,F2,J1}:0.430392908643;RREB1:0.42925062443;SREBF1,2:0.418191449389;NHLH1,2:0.380967963235;FOXO1,3,4:0.374839941218;MTF1:0.371941950563;PRRX1,2:0.358963920894;EGR1..3:0.347281733781;NKX3-2:0.338912294395;NFE2L2:0.337999371906;PAX8:0.323788855643;SOX17:0.323351276018;MED-1{core}:0.307705864215;EN1,2:0.287893806726;FOXA2:0.285562261064;UFEwm:0.266623005153;NR1H4:0.255283686561;TBP:0.240425370473;NKX3-1:0.223904798412;POU3F1..4:0.198477057307;NKX2-2,8:0.190501450001;LEF1_TCF7_TCF7L1,2:0.185019694656;ALX4:0.174094327225;DMAP1_NCOR{1,2}_SMARC:0.171804951527;REST:0.167240896292;RFX1:0.1556984057;STAT2,4,6:0.147546739753;MEF2{A,B,C,D}:0.137632995638;RXR{A,B,G}:0.125230582994;CEBPA,B_DDIT3:0.111251113972;HNF1A:0.0936849625056;AIRE:0.0914363803382;CRX:0.0899292627157;STAT1,3:0.0888233133067;SP1:0.0619250513685;BACH2:0.0437048747349;RUNX1..3:0.0422047687587;NFIL3:0.028750961115;GFI1:0.00529098461604;FOSL2:0.000369599021083;ONECUT1,2:0.000318809177304;PDX1:-0.000736334646654;GATA4:-0.0134585851528;XCPE1{core}:-0.0374785238677;FOS_FOS{B,L1}_JUN{B,D}:-0.0407134586512;ZNF143:-0.0481005255871;HBP1_HMGB_SSRP1_UBTF:-0.0514208607673;FOX{D1,D2}:-0.0821881052298;TGIF1:-0.0865439864441;ZFP161:-0.0980256264187;AHR_ARNT_ARNT2:-0.131211158337;POU6F1:-0.134964436793;NRF1:-0.148919627818;HSF1,2:-0.150456161729;ELK1,4_GABP{A,B1}:-0.151898860632;ARID5B:-0.183018108173;JUN:-0.189175041613;ATF2:-0.233722475133;AR:-0.234956782207;ESRRA:-0.250908623643;NFE2:-0.253758233649;TFDP1:-0.261870376672;NANOG:-0.267155113051;PAX4:-0.271726617637;HNF4A_NR2F1,2:-0.273056057684;ZNF384:-0.290332906151;NFKB1_REL_RELA:-0.31196539595;ATF4:-0.322831101988;CDC5L:-0.340871784083;HOX{A4,D4}:-0.361733474203;PBX1:-0.36730364719;IRF1,2:-0.372330151858;BPTF:-0.411425312228;BREu{core}:-0.443170497896;ETS1,2:-0.448298476949;POU5F1:-0.459102274278;MYB:-0.478701281582;PAX2:-0.48418681225;PPARG:-0.488108552313;TLX2:-0.499419744581;FOXM1:-0.516903345463;RORA:-0.525701812203;CUX2:-0.527764456561;SOX2:-0.528226489442;PAX6:-0.543645571846;GATA6:-0.544560370606;RFX2..5_RFXANK_RFXAP:-0.551357183282;MYOD1:-0.566955214303;PAX3,7:-0.584466994064;LMO2:-0.586500291178;SOX5:-0.601952391992;ELF1,2,4:-0.609775893919;OCT4_SOX2{dimer}:-0.615344717306;SPIB:-0.627986345665;SNAI1..3:-0.629356168336;TOPORS:-0.642050638316;TEF:-0.645503353859;SPI1:-0.678468082505;NKX2-1,4:-0.733903698743;ATF5_CREB3:-0.759556811341;ZEB1:-0.762570857103;FOXP3:-0.76405611304;T:-0.772912705369;VSX1,2:-0.78764463353;IRF7:-0.834281042992;SOX{8,9,10}:-0.834445204175;CREB1:-0.83948021224;FOXN1:-0.85242674398;NFY{A,B,C}:-0.87068877389;RBPJ:-0.873899346361;PITX1..3:-0.922284450623;POU2F1..3:-0.965768917171;ALX1:-0.971029557989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0049632425;E2F1..5:-1.02634881625;CDX1,2,4:-1.18954640937;IKZF2:-1.26795979371;FOXP1:-1.30299167102;FOXD3:-1.32999670234;POU1F1:-1.34761033884;FOXQ1:-1.38228363451;ZBTB16:-1.45796951551;HOXA9_MEIS1:-1.47515609645 | |top_motifs=TAL1_TCF{3,4,12}:1.79573057455;HES1:1.67144441149;ATF6:1.49829935806;NFATC1..3:1.42400256256;RXRA_VDR{dimer}:1.33463641501;MAFB:1.31035014329;ZNF238:1.25790846526;ZNF423:1.24263888073;HOX{A5,B5}:1.23229033243;HIF1A:1.22424207249;GZF1:1.21026701444;GLI1..3:1.17242993482;FOXL1:1.09644477638;GTF2A1,2:1.07616203431;ZNF148:1.03914509208;NR3C1:1.0085505276;NANOG{mouse}:1.00491124092;MYBL2:0.992286554003;ESR1:0.984857418737;HAND1,2:0.9822028549;TLX1..3_NFIC{dimer}:0.969732376377;IKZF1:0.961564346026;TFAP4:0.951100599804;TEAD1:0.947298940612;GCM1,2:0.905060188892;TFAP2{A,C}:0.901150902996;EBF1:0.876245629542;NFE2L1:0.870436603172;SRF:0.869159002994;STAT5{A,B}:0.85963984986;GTF2I:0.8475425191;EP300:0.839589799938;MTE{core}:0.819232542602;NKX2-3_NKX2-5:0.786895243394;ZBTB6:0.781512810857;HOX{A6,A7,B6,B7}:0.772617407229;TP53:0.765919469926;GFI1B:0.758114670528;HIC1:0.747795572354;HMGA1,2:0.742441810448;NFIX:0.725526177223;EVI1:0.722524614912;DBP:0.721592785485;SMAD1..7,9:0.717084060535;MZF1:0.686768323787;PRDM1:0.683108681826;PATZ1:0.681150577175;PAX5:0.673883561891;NKX6-1,2:0.63865287564;XBP1:0.627798716639;TFAP2B:0.626084948997;MAZ:0.625043647794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.622264409939;bHLH_family:0.609059557813;SPZ1:0.587166465711;HMX1:0.557612555153;KLF4:0.543054411617;ADNP_IRX_SIX_ZHX:0.533999165492;MYFfamily:0.500302866362;NR5A1,2:0.484065639145;PAX1,9:0.479514761811;NR6A1:0.468611803059;HLF:0.459262895239;TBX4,5:0.458895336502;ZIC1..3:0.455792817707;LHX3,4:0.450723327812;YY1:0.444839946478;TFCP2:0.432144146529;FOX{I1,J2}:0.431786287253;FOX{F1,F2,J1}:0.430392908643;RREB1:0.42925062443;SREBF1,2:0.418191449389;NHLH1,2:0.380967963235;FOXO1,3,4:0.374839941218;MTF1:0.371941950563;PRRX1,2:0.358963920894;EGR1..3:0.347281733781;NKX3-2:0.338912294395;NFE2L2:0.337999371906;PAX8:0.323788855643;SOX17:0.323351276018;MED-1{core}:0.307705864215;EN1,2:0.287893806726;FOXA2:0.285562261064;UFEwm:0.266623005153;NR1H4:0.255283686561;TBP:0.240425370473;NKX3-1:0.223904798412;POU3F1..4:0.198477057307;NKX2-2,8:0.190501450001;LEF1_TCF7_TCF7L1,2:0.185019694656;ALX4:0.174094327225;DMAP1_NCOR{1,2}_SMARC:0.171804951527;REST:0.167240896292;RFX1:0.1556984057;STAT2,4,6:0.147546739753;MEF2{A,B,C,D}:0.137632995638;RXR{A,B,G}:0.125230582994;CEBPA,B_DDIT3:0.111251113972;HNF1A:0.0936849625056;AIRE:0.0914363803382;CRX:0.0899292627157;STAT1,3:0.0888233133067;SP1:0.0619250513685;BACH2:0.0437048747349;RUNX1..3:0.0422047687587;NFIL3:0.028750961115;GFI1:0.00529098461604;FOSL2:0.000369599021083;ONECUT1,2:0.000318809177304;PDX1:-0.000736334646654;GATA4:-0.0134585851528;XCPE1{core}:-0.0374785238677;FOS_FOS{B,L1}_JUN{B,D}:-0.0407134586512;ZNF143:-0.0481005255871;HBP1_HMGB_SSRP1_UBTF:-0.0514208607673;FOX{D1,D2}:-0.0821881052298;TGIF1:-0.0865439864441;ZFP161:-0.0980256264187;AHR_ARNT_ARNT2:-0.131211158337;POU6F1:-0.134964436793;NRF1:-0.148919627818;HSF1,2:-0.150456161729;ELK1,4_GABP{A,B1}:-0.151898860632;ARID5B:-0.183018108173;JUN:-0.189175041613;ATF2:-0.233722475133;AR:-0.234956782207;ESRRA:-0.250908623643;NFE2:-0.253758233649;TFDP1:-0.261870376672;NANOG:-0.267155113051;PAX4:-0.271726617637;HNF4A_NR2F1,2:-0.273056057684;ZNF384:-0.290332906151;NFKB1_REL_RELA:-0.31196539595;ATF4:-0.322831101988;CDC5L:-0.340871784083;HOX{A4,D4}:-0.361733474203;PBX1:-0.36730364719;IRF1,2:-0.372330151858;BPTF:-0.411425312228;BREu{core}:-0.443170497896;ETS1,2:-0.448298476949;POU5F1:-0.459102274278;MYB:-0.478701281582;PAX2:-0.48418681225;PPARG:-0.488108552313;TLX2:-0.499419744581;FOXM1:-0.516903345463;RORA:-0.525701812203;CUX2:-0.527764456561;SOX2:-0.528226489442;PAX6:-0.543645571846;GATA6:-0.544560370606;RFX2..5_RFXANK_RFXAP:-0.551357183282;MYOD1:-0.566955214303;PAX3,7:-0.584466994064;LMO2:-0.586500291178;SOX5:-0.601952391992;ELF1,2,4:-0.609775893919;OCT4_SOX2{dimer}:-0.615344717306;SPIB:-0.627986345665;SNAI1..3:-0.629356168336;TOPORS:-0.642050638316;TEF:-0.645503353859;SPI1:-0.678468082505;NKX2-1,4:-0.733903698743;ATF5_CREB3:-0.759556811341;ZEB1:-0.762570857103;FOXP3:-0.76405611304;T:-0.772912705369;VSX1,2:-0.78764463353;IRF7:-0.834281042992;SOX{8,9,10}:-0.834445204175;CREB1:-0.83948021224;FOXN1:-0.85242674398;NFY{A,B,C}:-0.87068877389;RBPJ:-0.873899346361;PITX1..3:-0.922284450623;POU2F1..3:-0.965768917171;ALX1:-0.971029557989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0049632425;E2F1..5:-1.02634881625;CDX1,2,4:-1.18954640937;IKZF2:-1.26795979371;FOXP1:-1.30299167102;FOXD3:-1.32999670234;POU1F1:-1.34761033884;FOXQ1:-1.38228363451;ZBTB16:-1.45796951551;HOXA9_MEIS1:-1.47515609645 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11276-116H7;search_select_hide=table117:FF:11276-116H7 | |||
}} | }} |
Latest revision as of 16:30, 3 June 2020
Name: | Osteoblast - differentiated, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11311 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11311
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11311
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.348 |
10 | 10 | 0.124 |
100 | 100 | 0.384 |
101 | 101 | 0.724 |
102 | 102 | 0.145 |
103 | 103 | 0.608 |
104 | 104 | 0.548 |
105 | 105 | 0.952 |
106 | 106 | 0.756 |
107 | 107 | 0.128 |
108 | 108 | 0.925 |
109 | 109 | 0.618 |
11 | 11 | 0.909 |
110 | 110 | 0.99 |
111 | 111 | 0.268 |
112 | 112 | 0.459 |
113 | 113 | 0.0372 |
114 | 114 | 0.887 |
115 | 115 | 0.731 |
116 | 116 | 0.466 |
117 | 117 | 0.101 |
118 | 118 | 0.292 |
119 | 119 | 0.275 |
12 | 12 | 0.442 |
120 | 120 | 0.944 |
121 | 121 | 0.824 |
122 | 122 | 0.589 |
123 | 123 | 1.17819e-4 |
124 | 124 | 0.795 |
125 | 125 | 0.823 |
126 | 126 | 0.415 |
127 | 127 | 0.73 |
128 | 128 | 0.407 |
129 | 129 | 0.9 |
13 | 13 | 0.072 |
130 | 130 | 0.158 |
131 | 131 | 0.113 |
132 | 132 | 0.285 |
133 | 133 | 0.47 |
134 | 134 | 0.2 |
135 | 135 | 0.34 |
136 | 136 | 0.235 |
137 | 137 | 0.111 |
138 | 138 | 0.743 |
139 | 139 | 0.503 |
14 | 14 | 0.417 |
140 | 140 | 0.145 |
141 | 141 | 0.014 |
142 | 142 | 0.982 |
143 | 143 | 0.525 |
144 | 144 | 0.318 |
145 | 145 | 0.659 |
146 | 146 | 0.222 |
147 | 147 | 0.356 |
148 | 148 | 0.0902 |
149 | 149 | 0.0927 |
15 | 15 | 0.452 |
150 | 150 | 0.816 |
151 | 151 | 0.762 |
152 | 152 | 0.0329 |
153 | 153 | 0.58 |
154 | 154 | 0.747 |
155 | 155 | 0.0158 |
156 | 156 | 0.809 |
157 | 157 | 0.768 |
158 | 158 | 0.00287 |
159 | 159 | 0.248 |
16 | 16 | 0.202 |
160 | 160 | 0.264 |
161 | 161 | 0.603 |
162 | 162 | 0.236 |
163 | 163 | 0.523 |
164 | 164 | 0.681 |
165 | 165 | 0.847 |
166 | 166 | 0.0555 |
167 | 167 | 0.312 |
168 | 168 | 0.631 |
169 | 169 | 0.14 |
17 | 17 | 0.665 |
18 | 18 | 0.239 |
19 | 19 | 0.024 |
2 | 2 | 0.236 |
20 | 20 | 0.107 |
21 | 21 | 0.61 |
22 | 22 | 0.304 |
23 | 23 | 0.532 |
24 | 24 | 0.915 |
25 | 25 | 0.216 |
26 | 26 | 0.666 |
27 | 27 | 0.714 |
28 | 28 | 0.083 |
29 | 29 | 0.837 |
3 | 3 | 0.985 |
30 | 30 | 0.0985 |
31 | 31 | 0.608 |
32 | 32 | 1.92039e-11 |
33 | 33 | 0.585 |
34 | 34 | 0.594 |
35 | 35 | 0.334 |
36 | 36 | 0.169 |
37 | 37 | 0.759 |
38 | 38 | 0.581 |
39 | 39 | 0.304 |
4 | 4 | 0.449 |
40 | 40 | 0.312 |
41 | 41 | 0.43 |
42 | 42 | 0.471 |
43 | 43 | 0.969 |
44 | 44 | 0.632 |
45 | 45 | 0.384 |
46 | 46 | 0.926 |
47 | 47 | 0.3 |
48 | 48 | 0.663 |
49 | 49 | 0.621 |
5 | 5 | 0.81 |
50 | 50 | 0.773 |
51 | 51 | 0.9 |
52 | 52 | 0.36 |
53 | 53 | 0.183 |
54 | 54 | 0.866 |
55 | 55 | 0.277 |
56 | 56 | 0.463 |
57 | 57 | 0.973 |
58 | 58 | 0.311 |
59 | 59 | 0.0667 |
6 | 6 | 0.313 |
60 | 60 | 0.562 |
61 | 61 | 0.687 |
62 | 62 | 0.345 |
63 | 63 | 0.723 |
64 | 64 | 0.633 |
65 | 65 | 0.839 |
66 | 66 | 0.648 |
67 | 67 | 0.566 |
68 | 68 | 0.229 |
69 | 69 | 0.529 |
7 | 7 | 0.253 |
70 | 70 | 0.354 |
71 | 71 | 0.385 |
72 | 72 | 0.647 |
73 | 73 | 0.0689 |
74 | 74 | 0.907 |
75 | 75 | 0.387 |
76 | 76 | 0.133 |
77 | 77 | 0.32 |
78 | 78 | 0.00342 |
79 | 79 | 0.0316 |
8 | 8 | 0.556 |
80 | 80 | 0.968 |
81 | 81 | 0.95 |
82 | 82 | 0.717 |
83 | 83 | 0.785 |
84 | 84 | 0.131 |
85 | 85 | 0.751 |
86 | 86 | 0.885 |
87 | 87 | 0.474 |
88 | 88 | 0.416 |
89 | 89 | 0.131 |
9 | 9 | 0.229 |
90 | 90 | 0.488 |
91 | 91 | 0.884 |
92 | 92 | 0.152 |
93 | 93 | 0.658 |
94 | 94 | 0.878 |
95 | 95 | 0.0819 |
96 | 96 | 0.434 |
97 | 97 | 0.425 |
98 | 98 | 0.941 |
99 | 99 | 0.00239 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11311
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000127 human osteoblast-Sciencell sample
FF:0000128 human osteoblast-Cell applications sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)