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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008263
|DRA_sample_Accession=CAGE@SAMD00005177
|accession_numbers=CAGE;DRX008371;DRR009243;DRZ000668;DRZ002053
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005177
|accession_numbers=CAGE;DRX008371;DRR009243;DRZ000668;DRZ002053;DRZ012018;DRZ013403
|accession_numbers_RNASeq=sRNA-Seq;DRX037222;DRR041588;DRZ007230
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.50!572.71!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.22!224.47!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.12!129.81!TBX21;;chr2:145271342..145271377,-!p5@ZEB2!2.08!119.24!ZEB2;;chr19:45971246..45971265,+!p1@FOSB!2.01!1748.31!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!1.97!456.91!NR4A2;;chr20:50159198..50159299,-!p1@NFATC2!1.96!128.95!NFATC2;;chr6:391743..391759,+!p1@IRF4!1.86!71.37!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.84!178.76!AKNA;;chr7:50343634..50343717,+!p2@IKZF1!1.84!67.71!IKZF1;;chr10:8096631..8096660,+!p1@GATA3!1.83!80.64!GATA3;;chr6:106546808..106546833,+!p3@PRDM1!1.81!79.57!PRDM1;;chr15:60884706..60884743,-!p1@RORA!1.79!295.63!RORA;;chr19:54041669..54041697,+!p2@ZNF331!1.77!58.22!ZNF331;;chr9:102584262..102584276,+!p1@NR4A3!1.76!122.91!NR4A3;;chr17:38020392..38020477,-!p1@IKZF3!1.76!57.14!IKZF3;;chr14:75745523..75745537,+!p1@FOS!1.75!6186.14!FOS;;chr14:75746722..75746777,+!p2@FOS!1.74!68.14!FOS;;chr10:8096772..8096787,+!p2@GATA3!1.73!61.24!GATA3;;chr19:54058073..54058088,+!p1@ZNF331!1.73!53.26!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.72!51.53!ZNF683;;chr3:63953435..63953499,+!p1@ATXN7!1.70!49.59!ATXN7;;chr8:123793988..123794016,+!p1@ZHX2!1.68!80.86!ZHX2;;chr20:56195474..56195506,-!p1@ZBP1!1.68!46.79!ZBP1;;chr14:64971288..64971316,-!p2@ZBTB25!1.66!134.55!ZBTB25;;chrX:106960285..106960299,-!p1@TSC22D3!1.65!1115.87!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.64!56.49!THAP2;;chr2:192015677..192015691,-!p3@STAT4!1.64!42.91!STAT4;;chr3:39195075..39195088,-!p1@CSRNP1!1.61!237.19!CSRNP1;;chr1:59249688..59249703,-!p3@JUN!1.61!225.55!JUN;;chr9:3525727..3525828,-!p2@RFX3!1.59!94.66!RFX3;;chr2:231090433..231090469,+!p1@SP140!1.57!36.23!SP140;;chr5:133450365..133450444,+!p1@TCF7!1.56!153.74!TCF7;;chrX:106960180..106960197,-!p2@TSC22D3!1.54!123.34!TSC22D3;;chr19:16435625..16435682,+!p1@KLF2!1.51!951.35!KLF2;;chr2:192015750..192015793,-!p2@STAT4!1.51!41.83!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.51!31.70!KDM5D;;chr3:5020939..5020952,+!p2@BHLHE40!1.50!94.44!BHLHE40;;chr10:35484053..35484076,+!p1@CREM!1.49!73.31!CREM;;chrX:106960221..106960236,-!p3@TSC22D3!1.47!76.33!TSC22D3;;chr9:102584128..102584144,+!p3@NR4A3!1.47!53.04!NR4A3;;chr4:57522166..57522260,-!p2@HOPX!1.46!31.70!HOPX;;chr5:133451294..133451310,+!p2@TCF7!1.46!27.82!TCF7;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1634.46!NFKBIA;;chr1:59249707..59249727,-!p1@JUN!1.45!1075.98!JUN;;chr10:3824332..3824425,-!p4@KLF6!1.45!43.77!KLF6;;chr6:106546834..106546850,+!p4@PRDM1!1.45!27.38!PRDM1;;chr1:26697189..26697205,-!p2@ZNF683!1.45!27.38!ZNF683;;chr4:103422499..103422632,+!p1@NFKB1!1.43!521.60!NFKB1;;chr5:131826457..131826514,-!p1@IRF1!1.42!937.33!IRF1;;chr14:35874077..35874091,-!p8@NFKBIA!1.42!25.23!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.41!316.97!ZEB2;;chr3:23986824..23986848,+!p2@NR1D2!1.41!132.61!NR1D2;;chr9:102584241..102584261,+!p4@NR4A3!1.41!37.73!NR4A3;;chr1:151030536..151030549,+!p8@MLLT11!1.40!24.37!MLLT11;;chr16:85932760..85932775,+!p1@IRF8!1.40!23.93!IRF8;;chr6:91006518..91006570,-!p1@BACH2!1.39!52.61!BACH2;;chr8:81397820..81397836,+!p2@ZBTB10!1.39!29.54!ZBTB10;;chr17:37934365..37934387,-!p2@IKZF3!1.39!23.72!IKZF3;;chr2:61108878..61108891,+!p5@REL!1.38!23.07!REL;;chr2:231090471..231090504,+!p2@SP140!1.38!22.86!SP140;;chr2:208394817..208394834,+!p3@CREB1!1.35!84.53!CREB1;;chr19:19729477..19729542,-!p1@PBX4!1.35!45.50!PBX4;;chr8:67525443..67525459,-!p2@MYBL1!1.34!30.83!MYBL1;;chr18:46475696..46475713,-!p1@SMAD7!1.34!23.50!SMAD7;;chr7:104654690..104654704,+!p2@MLL5!1.33!40.32!MLL5;;chr7:104654718..104654741,+!p3@MLL5!1.33!29.54!MLL5;;chr1:25291475..25291511,-!p2@RUNX3!1.33!20.48!RUNX3;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.84!IKZF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.31!47.65!NFKBIA;;chr13:74707894..74707947,-!p6@KLF12!1.31!21.56!KLF12;;chr2:68592406..68592424,+!p1@PLEK!1.31!19.41!PLEK;;chr8:60031619..60031676,-!p1@TOX!1.30!40.54!TOX;;chr8:81397876..81397898,+!p5@ZBTB10!1.30!22.43!ZBTB10;;chr8:123793252..123793266,+!p10@ZHX2!1.30!18.76!ZHX2;;chr2:61108695..61108753,+!p1@REL!1.29!123.99!REL;;chr8:81397846..81397860,+!p3@ZBTB10!1.29!23.07!ZBTB10;;chr19:54041645..54041661,+!p5@ZNF331!1.29!18.33!ZNF331;;chr3:18486354..18486377,-!p2@SATB1!1.28!22.43!SATB1;;chr11:67007548..67007610,+!p3@KDM2A!1.27!127.65!KDM2A;;chr1:10754477..10754517,-!p1@CASZ1!1.27!29.33!CASZ1;;chr12:72056773..72056796,+!p3@THAP2!1.27!23.07!THAP2;;chr6:106546786..106546802,+!p6@PRDM1!1.27!17.47!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!1.26!3836.88!JUNB;;chr21:36421347..36421380,-!p8@RUNX1!1.25!16.82!RUNX1;;chr2:157189617..157189667,-!p4@NR4A2!1.25!16.60!NR4A2;;chr4:57522674..57522699,-!p5@HOPX!1.25!16.60!HOPX;;chr2:43453734..43453751,-!p1@ZFP36L2!1.24!1701.30!ZFP36L2;;chr3:39195037..39195069,-!p2@CSRNP1!1.24!98.97!CSRNP1;;chr10:35416142..35416169,+!p3@CREM!1.24!42.91!CREM;;chr17:38497662..38497713,+!p4@RARA!1.24!18.98!RARA;;chr1:59249645..59249656,-!p4@JUN!1.23!40.11!JUN;;chr2:97202480..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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051
|ffid_belonging_in_development=CL:0000134,CL:0000051
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor2.CNhs11957.11311-117C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor2.CNhs11957.11311-117C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor2.CNhs11957.11311-117C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor2.CNhs11957.11311-117C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor2.CNhs11957.11311-117C6.hg38.nobarcode.ctss.bed.gz
|id=FF:11311-117C6
|id=FF:11311-117C6
|is_a=EFO:0002091;;FF:0000119
|is_a=EFO:0002091;;FF:0000119
|is_obsolete=
|is_obsolete=
|library_id=CNhs11957
|library_id=CNhs11957
|library_ids=CNhs11957
|library_id_phase_based=2:CNhs11957
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11311
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTTTCG.11311
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11311
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTTTCG.11311
|name=Natural Killer Cells, donor2
|name=Natural Killer Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11957,LSID836,release011,COMPLETED
|profile_hcage=CNhs11957,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 66: Line 82:
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|rna_weight_ug=10
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|sample_age=57
|sample_age=57
|sample_category=primary cells
|sample_category=primary cells
Line 89: Line 106:
|top_motifs=RORA:4.15651858328;T:3.70352324958;ATF4:3.66970768154;RFX2..5_RFXANK_RFXAP:3.5481318577;RUNX1..3:3.47038298513;CREB1:3.45525311346;PAX3,7:3.38917284335;ATF5_CREB3:3.33092805291;BPTF:2.98501587596;PITX1..3:2.97364388905;FOX{D1,D2}:2.96592390538;FOXP1:2.91730708309;NFKB1_REL_RELA:2.87506601897;FOXN1:2.51124031305;FOXO1,3,4:2.39132005603;ELF1,2,4:2.3837213114;DMAP1_NCOR{1,2}_SMARC:2.35166157424;ZBTB16:2.33473478236;PAX2:2.2811130744;RFX1:2.24102100516;ETS1,2:2.19189517297;FOX{F1,F2,J1}:2.11397797553;NKX2-1,4:2.0723335581;HMX1:2.05164485722;TBX4,5:2.01643870732;JUN:2.00118169184;TOPORS:1.85916048076;SPI1:1.7585223761;NKX6-1,2:1.73574882005;IKZF2:1.63529606383;TGIF1:1.62188185941;TLX2:1.54026349419;ATF6:1.39349830042;ZNF384:1.28054819895;IRF1,2:1.23189523634;ATF2:1.18648520394;SPIB:1.13334420694;FOX{I1,J2}:1.09760769471;BREu{core}:1.07875190175;HIF1A:1.03888330836;NANOG{mouse}:0.914716526608;LEF1_TCF7_TCF7L1,2:0.885068498108;PPARG:0.86834396739;FOSL2:0.755849156242;SMAD1..7,9:0.70596571432;EGR1..3:0.663321010975;FOS_FOS{B,L1}_JUN{B,D}:0.650264013258;MAFB:0.630982289417;EP300:0.600633504986;AIRE:0.600628617159;MYB:0.594001212882;PAX4:0.572483223935;CDX1,2,4:0.551317492613;HBP1_HMGB_SSRP1_UBTF:0.456044322495;ELK1,4_GABP{A,B1}:0.446250319862;PAX6:0.442571135295;TFDP1:0.381572022578;SREBF1,2:0.367909059392;RXRA_VDR{dimer}:0.34521345814;NFATC1..3:0.335530357783;BACH2:0.328600496937;FOXD3:0.30916545634;RREB1:0.282657881586;SOX2:0.26747947606;NKX3-1:0.25814082924;FOXP3:0.249457002819;FOXL1:0.228536830743;HMGA1,2:0.221083384826;GCM1,2:0.214347283464;STAT2,4,6:0.195854507317;NFIL3:0.18410192986;GATA6:0.183480128925;NFE2:0.143499432271;MYFfamily:0.127509906273;NFE2L1:0.0924848319046;HOX{A6,A7,B6,B7}:0.0889115752303;IRF7:-0.0193834572831;SOX5:-0.0224842294042;AHR_ARNT_ARNT2:-0.0823799675095;NFY{A,B,C}:-0.102939309832;PDX1:-0.159155796531;POU2F1..3:-0.193326923719;HES1:-0.224520198739;EVI1:-0.225561772231;DBP:-0.252688268492;FOXQ1:-0.255776013989;FOXM1:-0.26521706905;NFIX:-0.26747824847;TFAP4:-0.279689208073;NFE2L2:-0.294309985026;E2F1..5:-0.317798271484;SNAI1..3:-0.330861203689;CEBPA,B_DDIT3:-0.335625636665;MTE{core}:-0.349627975912;PBX1:-0.351431953024;NR5A1,2:-0.359556734301;CUX2:-0.37067892758;ZEB1:-0.385609125073;SRF:-0.39701031046;GLI1..3:-0.400019637883;HOXA9_MEIS1:-0.413736319655;MTF1:-0.418926536665;MED-1{core}:-0.436829979538;ZFP161:-0.555242138741;HNF4A_NR2F1,2:-0.56638865527;NRF1:-0.569790702558;STAT5{A,B}:-0.569982868138;SPZ1:-0.572614340063;MYOD1:-0.58448722168;TFAP2B:-0.585253987136;PATZ1:-0.615161902532;HLF:-0.628433433405;REST:-0.683242106167;PRRX1,2:-0.695058821721;NANOG:-0.730366257112;PAX5:-0.7512870846;TFAP2{A,C}:-0.752808176195;RBPJ:-0.777554109645;ALX4:-0.786980258749;ZIC1..3:-0.827519309257;ZBTB6:-0.832006290003;AR:-0.836106440641;LMO2:-0.847187927459;TAL1_TCF{3,4,12}:-0.85211219407;NHLH1,2:-0.853859848886;STAT1,3:-0.859137620624;bHLH_family:-0.898221613912;HNF1A:-0.908652109531;TFCP2:-0.91802017272;XBP1:-0.941301900207;MZF1:-0.945011028782;MAZ:-0.949245696094;ZNF423:-0.967234637754;OCT4_SOX2{dimer}:-1.01428072772;UFEwm:-1.01485789629;CRX:-1.02152258441;NR1H4:-1.02153824151;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.02912951523;RXR{A,B,G}:-1.05007216229;HSF1,2:-1.05010866278;NKX2-2,8:-1.05287699359;YY1:-1.05311195755;SOX{8,9,10}:-1.05626513862;SP1:-1.06590708063;HIC1:-1.06710377981;TEF:-1.09981985923;GATA4:-1.19764071778;POU1F1:-1.20724756815;MEF2{A,B,C,D}:-1.21471946916;FOXA2:-1.23283958302;GFI1:-1.2360710295;ESRRA:-1.24124665879;ALX1:-1.35362062522;HAND1,2:-1.38566521526;ZNF143:-1.39066722938;CDC5L:-1.3914062898;PAX8:-1.41642477211;POU6F1:-1.42189022527;ZNF148:-1.42767132531;SOX17:-1.42969924446;TP53:-1.45484139194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.46487474224;TBP:-1.46731864321;ARID5B:-1.5066477982;MYBL2:-1.53387993299;HOX{A5,B5}:-1.54678723343;ZNF238:-1.62247196009;LHX3,4:-1.6535159443;XCPE1{core}:-1.65606600463;POU5F1:-1.73349123388;NR6A1:-1.7673186003;GTF2I:-1.79426404188;NKX2-3_NKX2-5:-1.82206607823;ONECUT1,2:-1.82748857802;POU3F1..4:-1.8834677753;GTF2A1,2:-1.88515029679;TEAD1:-1.90488272891;EN1,2:-1.91831591472;GFI1B:-2.08695011236;GZF1:-2.1061156402;TLX1..3_NFIC{dimer}:-2.15773851504;VSX1,2:-2.23330776665;PRDM1:-2.23777275743;ESR1:-2.34897518172;HOX{A4,D4}:-2.36637102338;EBF1:-2.37045995855;NKX3-2:-2.37223378396;KLF4:-2.41535145488;IKZF1:-2.44470329053;ADNP_IRX_SIX_ZHX:-2.82465441058;PAX1,9:-3.42913110453;NR3C1:-3.97627987022
|top_motifs=RORA:4.15651858328;T:3.70352324958;ATF4:3.66970768154;RFX2..5_RFXANK_RFXAP:3.5481318577;RUNX1..3:3.47038298513;CREB1:3.45525311346;PAX3,7:3.38917284335;ATF5_CREB3:3.33092805291;BPTF:2.98501587596;PITX1..3:2.97364388905;FOX{D1,D2}:2.96592390538;FOXP1:2.91730708309;NFKB1_REL_RELA:2.87506601897;FOXN1:2.51124031305;FOXO1,3,4:2.39132005603;ELF1,2,4:2.3837213114;DMAP1_NCOR{1,2}_SMARC:2.35166157424;ZBTB16:2.33473478236;PAX2:2.2811130744;RFX1:2.24102100516;ETS1,2:2.19189517297;FOX{F1,F2,J1}:2.11397797553;NKX2-1,4:2.0723335581;HMX1:2.05164485722;TBX4,5:2.01643870732;JUN:2.00118169184;TOPORS:1.85916048076;SPI1:1.7585223761;NKX6-1,2:1.73574882005;IKZF2:1.63529606383;TGIF1:1.62188185941;TLX2:1.54026349419;ATF6:1.39349830042;ZNF384:1.28054819895;IRF1,2:1.23189523634;ATF2:1.18648520394;SPIB:1.13334420694;FOX{I1,J2}:1.09760769471;BREu{core}:1.07875190175;HIF1A:1.03888330836;NANOG{mouse}:0.914716526608;LEF1_TCF7_TCF7L1,2:0.885068498108;PPARG:0.86834396739;FOSL2:0.755849156242;SMAD1..7,9:0.70596571432;EGR1..3:0.663321010975;FOS_FOS{B,L1}_JUN{B,D}:0.650264013258;MAFB:0.630982289417;EP300:0.600633504986;AIRE:0.600628617159;MYB:0.594001212882;PAX4:0.572483223935;CDX1,2,4:0.551317492613;HBP1_HMGB_SSRP1_UBTF:0.456044322495;ELK1,4_GABP{A,B1}:0.446250319862;PAX6:0.442571135295;TFDP1:0.381572022578;SREBF1,2:0.367909059392;RXRA_VDR{dimer}:0.34521345814;NFATC1..3:0.335530357783;BACH2:0.328600496937;FOXD3:0.30916545634;RREB1:0.282657881586;SOX2:0.26747947606;NKX3-1:0.25814082924;FOXP3:0.249457002819;FOXL1:0.228536830743;HMGA1,2:0.221083384826;GCM1,2:0.214347283464;STAT2,4,6:0.195854507317;NFIL3:0.18410192986;GATA6:0.183480128925;NFE2:0.143499432271;MYFfamily:0.127509906273;NFE2L1:0.0924848319046;HOX{A6,A7,B6,B7}:0.0889115752303;IRF7:-0.0193834572831;SOX5:-0.0224842294042;AHR_ARNT_ARNT2:-0.0823799675095;NFY{A,B,C}:-0.102939309832;PDX1:-0.159155796531;POU2F1..3:-0.193326923719;HES1:-0.224520198739;EVI1:-0.225561772231;DBP:-0.252688268492;FOXQ1:-0.255776013989;FOXM1:-0.26521706905;NFIX:-0.26747824847;TFAP4:-0.279689208073;NFE2L2:-0.294309985026;E2F1..5:-0.317798271484;SNAI1..3:-0.330861203689;CEBPA,B_DDIT3:-0.335625636665;MTE{core}:-0.349627975912;PBX1:-0.351431953024;NR5A1,2:-0.359556734301;CUX2:-0.37067892758;ZEB1:-0.385609125073;SRF:-0.39701031046;GLI1..3:-0.400019637883;HOXA9_MEIS1:-0.413736319655;MTF1:-0.418926536665;MED-1{core}:-0.436829979538;ZFP161:-0.555242138741;HNF4A_NR2F1,2:-0.56638865527;NRF1:-0.569790702558;STAT5{A,B}:-0.569982868138;SPZ1:-0.572614340063;MYOD1:-0.58448722168;TFAP2B:-0.585253987136;PATZ1:-0.615161902532;HLF:-0.628433433405;REST:-0.683242106167;PRRX1,2:-0.695058821721;NANOG:-0.730366257112;PAX5:-0.7512870846;TFAP2{A,C}:-0.752808176195;RBPJ:-0.777554109645;ALX4:-0.786980258749;ZIC1..3:-0.827519309257;ZBTB6:-0.832006290003;AR:-0.836106440641;LMO2:-0.847187927459;TAL1_TCF{3,4,12}:-0.85211219407;NHLH1,2:-0.853859848886;STAT1,3:-0.859137620624;bHLH_family:-0.898221613912;HNF1A:-0.908652109531;TFCP2:-0.91802017272;XBP1:-0.941301900207;MZF1:-0.945011028782;MAZ:-0.949245696094;ZNF423:-0.967234637754;OCT4_SOX2{dimer}:-1.01428072772;UFEwm:-1.01485789629;CRX:-1.02152258441;NR1H4:-1.02153824151;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.02912951523;RXR{A,B,G}:-1.05007216229;HSF1,2:-1.05010866278;NKX2-2,8:-1.05287699359;YY1:-1.05311195755;SOX{8,9,10}:-1.05626513862;SP1:-1.06590708063;HIC1:-1.06710377981;TEF:-1.09981985923;GATA4:-1.19764071778;POU1F1:-1.20724756815;MEF2{A,B,C,D}:-1.21471946916;FOXA2:-1.23283958302;GFI1:-1.2360710295;ESRRA:-1.24124665879;ALX1:-1.35362062522;HAND1,2:-1.38566521526;ZNF143:-1.39066722938;CDC5L:-1.3914062898;PAX8:-1.41642477211;POU6F1:-1.42189022527;ZNF148:-1.42767132531;SOX17:-1.42969924446;TP53:-1.45484139194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.46487474224;TBP:-1.46731864321;ARID5B:-1.5066477982;MYBL2:-1.53387993299;HOX{A5,B5}:-1.54678723343;ZNF238:-1.62247196009;LHX3,4:-1.6535159443;XCPE1{core}:-1.65606600463;POU5F1:-1.73349123388;NR6A1:-1.7673186003;GTF2I:-1.79426404188;NKX2-3_NKX2-5:-1.82206607823;ONECUT1,2:-1.82748857802;POU3F1..4:-1.8834677753;GTF2A1,2:-1.88515029679;TEAD1:-1.90488272891;EN1,2:-1.91831591472;GFI1B:-2.08695011236;GZF1:-2.1061156402;TLX1..3_NFIC{dimer}:-2.15773851504;VSX1,2:-2.23330776665;PRDM1:-2.23777275743;ESR1:-2.34897518172;HOX{A4,D4}:-2.36637102338;EBF1:-2.37045995855;NKX3-2:-2.37223378396;KLF4:-2.41535145488;IKZF1:-2.44470329053;ADNP_IRX_SIX_ZHX:-2.82465441058;PAX1,9:-3.42913110453;NR3C1:-3.97627987022
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11311-117C6;search_select_hide=table117:FF:11311-117C6
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:Natural Killer Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11957
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexmale
age57
cell typenatural killer cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNK726
catalog number3H100-50-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005177
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11957 CAGE DRX008371 DRR009243
Accession ID Hg19

Library idBAMCTSS
CNhs11957 DRZ000668 DRZ002053
Accession ID Hg38

Library idBAMCTSS
CNhs11957 DRZ012018 DRZ013403
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005177
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GTTTCG sRNA-Seq DRX037222 DRR041588
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GTTTCG DRZ007230


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.217
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0848
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.834
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.903
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.2
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.62
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.847
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.156
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.812
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.551
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.156
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.499
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0421
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0848
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.248
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0848
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.285
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.921
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.82
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0848
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.514
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.4
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0848
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.514
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.748
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0848
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.803
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.58
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0635
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.468
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.361
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.94
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.503
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.851
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0848
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.669
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0848
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.156
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.886
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.909
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.861
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.156
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.725
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11957

Jaspar motifP-value
MA0002.24.49468e-6
MA0003.10.342
MA0004.10.771
MA0006.10.25
MA0007.10.326
MA0009.10.0118
MA0014.10.676
MA0017.10.069
MA0018.22.87007e-10
MA0019.10.724
MA0024.10.753
MA0025.10.135
MA0027.10.501
MA0028.10.0456
MA0029.10.649
MA0030.10.014
MA0031.11.06832e-4
MA0035.20.618
MA0038.10.0481
MA0039.20.217
MA0040.10.743
MA0041.10.247
MA0042.10.634
MA0043.11.82964e-4
MA0046.10.0284
MA0047.20.688
MA0048.10.56
MA0050.12.4198e-6
MA0051.10.0224
MA0052.10.0564
MA0055.10.662
MA0057.10.166
MA0058.10.741
MA0059.10.57
MA0060.10.0551
MA0061.11.58873e-16
MA0062.25.86746e-10
MA0065.20.86
MA0066.10.619
MA0067.17.22827e-4
MA0068.10.605
MA0069.10.963
MA0070.10.448
MA0071.10.718
MA0072.10.0435
MA0073.10.547
MA0074.10.909
MA0076.10.0225
MA0077.10.147
MA0078.10.876
MA0079.20.783
MA0080.23.15123e-10
MA0081.10.0102
MA0083.10.478
MA0084.10.254
MA0087.10.5
MA0088.10.206
MA0090.11.58917e-4
MA0091.10.251
MA0092.10.76
MA0093.10.668
MA0099.20.17
MA0100.10.966
MA0101.15.29404e-12
MA0102.20.582
MA0103.10.503
MA0104.20.861
MA0105.12.26145e-11
MA0106.10.057
MA0107.12.20756e-11
MA0108.24.52069e-4
MA0111.10.331
MA0112.20.22
MA0113.10.239
MA0114.10.154
MA0115.10.0964
MA0116.10.111
MA0117.10.0119
MA0119.10.327
MA0122.10.707
MA0124.10.0671
MA0125.10.068
MA0131.10.0599
MA0135.10.138
MA0136.14.11708e-15
MA0137.20.203
MA0138.20.0283
MA0139.10.93
MA0140.10.97
MA0141.10.176
MA0142.10.0904
MA0143.10.0955
MA0144.10.538
MA0145.10.0288
MA0146.10.592
MA0147.10.829
MA0148.10.979
MA0149.10.772
MA0150.10.0779
MA0152.10.00683
MA0153.10.0658
MA0154.10.986
MA0155.10.182
MA0156.17.68695e-11
MA0157.10.00692
MA0159.10.925
MA0160.10.888
MA0162.10.293
MA0163.10.025
MA0164.10.52
MA0258.10.855
MA0259.10.739



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11957

Novel motifP-value
10.994
100.00862
1000.688
1010.341
1020.939
1030.512
1040.791
1050.718
1060.159
1070.0806
1080.613
1090.894
110.835
1100.417
1110.554
1120.832
1130.178
1140.94
1150.385
1160.175
1170.0075
1180.41
1190.575
120.651
1200.269
1210.454
1220.889
1234.95687e-6
1240.808
1250.643
1260.684
1270.301
1280.911
1290.182
130.508
1300.238
1310.405
1320.196
1330.276
1340.771
1350.292
1360.784
1370.0754
1380.842
1390.202
140.453
1400.737
1410.725
1420.248
1430.0375
1440.936
1450.708
1460.413
1470.0301
1480.415
1490.184
150.325
1500.975
1510.366
1520.994
1530.483
1540.102
1550.0628
1560.672
1570.773
1580.023
1590.405
160.209
1600.0524
1610.639
1620.0332
1630.753
1640.0758
1650.766
1660.422
1670.106
1680.504
1690.304
170.7
180.725
190.0676
20.108
200.111
210.896
220.221
230.901
240.455
250.175
260.936
270.422
280.344
290.118
30.669
300.046
310.562
320.0186
330.503
340.297
350.373
360.114
370.45
380.633
390.519
40.974
400.928
410.159
420.506
430.546
440.597
450.0982
460.998
470.876
480.923
490.183
50.614
500.44
510.947
520.865
530.224
540.977
550.538
560.798
570.88
580.178
590.19
60.937
600.581
610.309
620.331
630.749
640.912
650.539
660.271
670.44
680.769
690.934
70.686
700.292
710.238
720.441
730.424
740.627
750.0412
760.0946
770.00238
780.859
790.535
80.267
800.086
810.887
820.694
830.787
840.066
850.704
860.0354
870.976
880.901
890.00379
90.764
900.911
910.748
920.971
930.834
940.325
950.156
960.837
970.266
980.608
996.69795e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11957


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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