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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005471
|DRA_sample_Accession=CAGE@SAMD00005471
|accession_numbers=CAGE;DRX008408;DRR009280;DRZ000705;DRZ002090
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005471
|accession_numbers=CAGE;DRX008408;DRR009280;DRZ000705;DRZ002090;DRZ012055;DRZ013440
|accession_numbers_RNASeq=sRNA-Seq;DRX037107;DRR041473;DRZ007115
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.ctss.bed.gz
|id=FF:11328-117E5
|id=FF:11328-117E5
|is_a=EFO:0002091;;FF:0000139
|is_a=EFO:0002091;;FF:0000139
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|library_id=CNhs11971
|library_id=CNhs11971
|library_id_phase_based=2:CNhs11971
|library_id_phase_based=2:CNhs11971
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11328
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CGTACG.11328
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11328
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CGTACG.11328
|name=Preadipocyte - breast, donor2
|name=Preadipocyte - breast, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655
|top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11328-117E5;search_select_hide=table117:FF:11328-117E5
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Preadipocyte - breast, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11971
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage40 years old adult
sexfemale
age40
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005471
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11971 CAGE DRX008408 DRR009280
Accession ID Hg19

Library idBAMCTSS
CNhs11971 DRZ000705 DRZ002090
Accession ID Hg38

Library idBAMCTSS
CNhs11971 DRZ012055 DRZ013440
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005471
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.CGTACG sRNA-Seq DRX037107 DRR041473
Accession ID Hg19

Library idBAMCTSS
SRhi10007.CGTACG DRZ007115


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0534
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.251
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle7.902214e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.611
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.386
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.653
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.265
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.265
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal1.134
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0776
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.933
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0111
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.444
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.327
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.265
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.872
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.781
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.23
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.472
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.23
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.107
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.169
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11971

Jaspar motifP-value
MA0002.20.566
MA0003.10.252
MA0004.10.545
MA0006.10.0975
MA0007.10.584
MA0009.10.309
MA0014.10.216
MA0017.10.74
MA0018.23.64976e-5
MA0019.10.549
MA0024.11.94203e-4
MA0025.10.00283
MA0027.10.545
MA0028.10.0156
MA0029.10.303
MA0030.10.118
MA0031.10.0789
MA0035.20.0482
MA0038.10.00655
MA0039.20.00733
MA0040.10.2
MA0041.10.742
MA0042.10.996
MA0043.14.98064e-5
MA0046.10.272
MA0047.20.417
MA0048.10.202
MA0050.13.02813e-5
MA0051.10.00267
MA0052.10.0655
MA0055.10.985
MA0057.10.237
MA0058.10.292
MA0059.10.582
MA0060.15.71477e-10
MA0061.10.0886
MA0062.29.99918e-7
MA0065.20.864
MA0066.10.259
MA0067.10.0174
MA0068.10.675
MA0069.10.0356
MA0070.10.775
MA0071.10.351
MA0072.10.483
MA0073.10.847
MA0074.10.176
MA0076.10.00171
MA0077.10.955
MA0078.10.865
MA0079.20.791
MA0080.25.07658e-7
MA0081.10.0139
MA0083.10.189
MA0084.10.518
MA0087.10.558
MA0088.10.601
MA0090.18.56278e-4
MA0091.10.0497
MA0092.10.193
MA0093.10.452
MA0099.24.57806e-5
MA0100.10.548
MA0101.14.45388e-4
MA0102.20.0361
MA0103.10.138
MA0104.20.0478
MA0105.10.372
MA0106.10.0763
MA0107.13.16606e-4
MA0108.20.662
MA0111.10.71
MA0112.21.17522e-4
MA0113.10.363
MA0114.10.757
MA0115.10.0662
MA0116.10.128
MA0117.10.2
MA0119.10.124
MA0122.10.406
MA0124.10.0166
MA0125.10.232
MA0131.10.237
MA0135.10.284
MA0136.11.59505e-10
MA0137.20.122
MA0138.20.0395
MA0139.10.952
MA0140.10.218
MA0141.10.461
MA0142.10.405
MA0143.10.306
MA0144.10.999
MA0145.10.213
MA0146.10.762
MA0147.10.117
MA0148.10.353
MA0149.10.68
MA0150.10.0236
MA0152.10.0318
MA0153.10.926
MA0154.10.323
MA0155.10.113
MA0156.12.43783e-8
MA0157.10.261
MA0159.10.0652
MA0160.10.351
MA0162.10.0751
MA0163.10.0145
MA0164.10.62
MA0258.10.0358
MA0259.10.29



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11971

Novel motifP-value
10.406
100.342
1000.996
1010.194
1020.269
1030.396
1040.677
1050.0598
1060.0472
1070.0396
1080.157
1090.478
110.384
1100.455
1110.359
1120.303
1130.243
1140.0303
1150.00852
1160.0461
1170.941
1180.452
1190.93
120.322
1200.31
1210.69
1220.181
1230.0506
1240.44
1250.815
1260.765
1270.52
1280.106
1290.941
130.956
1300.532
1310.973
1320.475
1330.864
1340.631
1350.529
1360.566
1370.537
1380.92
1390.222
140.28
1400.717
1410.991
1420.995
1430.431
1440.653
1450.904
1460.756
1470.176
1480.99
1490.00165
150.886
1500.421
1510.831
1520.00682
1530.193
1540.872
1550.105
1560.961
1570.574
1580.0281
1590.524
160.00914
1600.533
1610.7
1620.369
1630.614
1640.174
1650.752
1660.305
1670.54
1680.946
1690.0192
170.228
180.135
190.00428
20.302
200.602
210.283
220.223
230.237
240.131
250.43
260.266
270.441
280.264
290.658
30.4
300.679
310.475
321.12087e-16
330.727
340.88
350.624
360.0419
370.0784
380.749
390.293
40.96
400.59
410.944
420.386
430.191
440.0899
450.911
460.298
470.553
480.481
490.704
50.643
500.748
510.878
520.609
530.132
540.684
550.108
560.745
570.709
580.419
590.0338
60.514
600.504
610.785
620.803
630.279
640.776
650.388
660.244
670.551
680.334
690.414
70.411
700.296
710.271
720.731
730.00545
740.278
750.603
760.6
770.0323
780.834
790.00101
80.238
800.204
810.47
820.166
830.431
840.263
850.0319
860.468
870.116
880.816
890.0766
90.861
900.625
910.945
920.0745
930.39
940.907
950.187
960.942
970.659
980.941
990.0167



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11971


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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