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(Created page with "{{f5samples |id=FF:11357-117H7 |name=Preadipocyte - visceral, donor2 |sample_id=11357 |rna_tube_id=117H7 |rna_box=117 |rna_position=H7 |sample_cell_lot=N/A |sample_cel...")
 
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{{f5samples
{{f5samples
|id=FF:11357-117H7
|DRA_sample_Accession=CAGE@SAMD00005360
|name=Preadipocyte - visceral, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005360
|sample_id=11357
|accession_numbers=CAGE;DRX008417;DRR009289;DRZ000714;DRZ002099;DRZ012064;DRZ013449
|rna_tube_id=117H7
|accession_numbers_RNASeq=sRNA-Seq;DRX037161;DRR041527;DRZ007169
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=H7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2115.00000
|rna_catalog_number=CA802s-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=59 years old adult
|sample_tissue=heart
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=59
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=preadipocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11982,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10010,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002582
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000143
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!1.94!105.93!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.53!86.72!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.53!33.23!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.16!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!1.45!27.00!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.27!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.37!100.74!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.36!21.81!FOXG1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.89!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.33!20.25!TCF21;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.95!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.81!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.66!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!1.25!53.48!TWIST2;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.62!GATA4;;chr12:54447637..54447659,+!p4@HOXC4!1.23!16.10!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!1.22!15.58!FOXG1;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.92!TCF12;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.65!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.46!RFX8;;chr17:46622070..46622109,-!p1@HOXB2!1.12!27.00!HOXB2;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.77!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.10!345.82!HMGA1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.33!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.69!CREB3L1;;chr12:66218212..66218244,+!p5@HMGA2!1.08!16.10!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.17!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!1.06!16.10!HOXB2;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.39!RFX8;;chr17:46622205..46622218,-!p3@HOXB2!1.05!11.94!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.87!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.04!9.87!EHF;;chr3:141087393..141087426,+!p3@ZBTB38!1.02!38.42!ZBTB38;;chr11:46299199..46299233,+!p1@CREB3L1!1.01!48.29!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.06!FOXQ1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.92!POU2F2;;chr12:54447599..54447630,+!p3@HOXC4!0.99!10.90!HOXC4;;chr17:46622440..46622477,-!p5@HOXB2!0.99!9.87!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.83!KDM5D;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.29!FOXC2;;chr1:170632250..170632277,+!p7@PRRX1!0.97!8.31!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.31!TBX20;;chr17:46675420..46675465,-!p3@HOXB6!0.96!9.35!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.44!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.39!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.79!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.31!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.27!ZFY;;chr10:131762504..131762555,-!p1@EBF3!0.92!7.27!EBF3;;chr12:66218904..66218913,+!p11@HMGA2!0.92!7.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.92!7.27!RFX8;;chr1:170632137..170632172,+!p10@PRRX1!0.89!6.75!PRRX1;;chr12:54447686..54447704,+!p5@HOXC4!0.89!6.75!HOXC4;;chr12:66218923..66218934,+!p14@HMGA2!0.89!6.75!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.39!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.17!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.86!7.79!ZBTB38;;chr2:101591314..101591333,+!p2@NPAS2!0.86!7.27!NPAS2;;chr8:25902876..25902936,-!p1@EBF2!0.86!6.23!EBF2;;chr15:67430351..67430366,+!p10@SMAD3!0.86!6.23!SMAD3;;chr8:49833978..49833996,-!p1@SNAI2!0.84!131.37!SNAI2;;chr20:6748325..6748352,+!p1@BMP2!0.84!8.83!BMP2;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.90!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.83!5.71!HOXB2;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.71!HIF3A;;chr4:174451370..174451387,-!p1@HAND2!0.83!5.71!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!0.83!5.71!HOXA5;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.71!PRRX2;;chr12:77459306..77459365,-!p1@E2F7!0.82!74.77!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.82!44.66!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.39!ZFP106;;chr15:96874244..96874259,+!p5@NR2F2!0.81!14.02!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.31!ETV4;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.71!SHOX2;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.48!IFI16;;chr5:321810..321877,+!p1@AHRR!0.79!17.65!AHRR;;chr17:46622229..46622257,-!p6@HOXB2!0.79!6.23!HOXB2;;chr7:27183291..27183324,-!p1@HOXA5!0.79!5.19!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.19!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.79!5.19!KLF17;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.50!TWIST1;;chr19:35455110..35455149,-!p1@ZNF792!0.78!10.39!ZNF792;;chr15:96875041..96875052,+!p17@NR2F2!0.77!7.27!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.76!5.71!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.27!ZBTB38;;chr7:14028488..14028516,-!p2@ETV1!0.75!5.19!ETV1;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.67!HMGA2;;chr17:46622175..46622186,-!p12@HOXB2!0.75!4.67!HOXB2;;chr17:46671108..46671147,-!p1@HOXB5!0.75!4.67!HOXB5;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.67!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.74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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002582
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11357-117H7
|is_a=EFO:0002091;;FF:0000143
|is_obsolete=
|library_id=CNhs11982
|library_id_phase_based=2:CNhs11982
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11357
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CGTACG.11357
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11357
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CGTACG.11357
|name=Preadipocyte - visceral, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11982,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.327811966732366,0,-0.27483329820609,0.205267350102595,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.0836726148807695,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.078792639394719,0.181630511148827,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.181630511148827,0,0,0,-0.0969923612426051,0,0,0.0842868839357301,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00535791356461235,0.0908152555744135,0,0,-0.0584468268118252,-0.0295668915470415,0,0.309312603024698,0,0,-0.0980353512377064,0.217596499176857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.143770881543955,-0.160024770730062,0,0,0,0,0,0
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|rna_box=117
|rna_catalog_number=CA802s-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2115
|rna_od260/230=
|rna_od260/280=
|rna_position=H7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117H7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.CGTACG
|sample_age=59
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=preadipocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=59 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.11064333860526e-216!GO:0005737;cytoplasm;1.15873897711176e-182!GO:0043226;organelle;2.78851210509517e-163!GO:0043231;intracellular membrane-bound organelle;4.09151125348448e-163!GO:0043229;intracellular organelle;4.35361568700984e-163!GO:0043227;membrane-bound organelle;7.76056582788926e-163!GO:0044422;organelle part;9.15313322706827e-134!GO:0044446;intracellular organelle part;2.40886189495401e-132!GO:0044444;cytoplasmic part;7.8934135594874e-127!GO:0032991;macromolecular complex;1.2810923231214e-92!GO:0030529;ribonucleoprotein complex;1.27727303677518e-81!GO:0044237;cellular metabolic process;3.39175426271646e-76!GO:0044238;primary metabolic process;4.91106522152032e-76!GO:0005515;protein binding;1.01848359876975e-75!GO:0043170;macromolecule metabolic process;5.80183585514917e-71!GO:0043233;organelle lumen;9.48599722356547e-68!GO:0031974;membrane-enclosed lumen;9.48599722356547e-68!GO:0044428;nuclear part;9.49631740289653e-65!GO:0003723;RNA binding;2.40349429794661e-64!GO:0005739;mitochondrion;1.17192223114281e-59!GO:0005634;nucleus;4.70526621175256e-58!GO:0019538;protein metabolic process;2.83135039391842e-50!GO:0006412;translation;2.08425191799887e-49!GO:0005840;ribosome;5.57135218549186e-49!GO:0031090;organelle membrane;5.40498708404978e-47!GO:0043234;protein complex;3.64076291721466e-46!GO:0006396;RNA processing;5.78909922634366e-45!GO:0044260;cellular macromolecule metabolic process;2.52434987905395e-44!GO:0044267;cellular protein metabolic process;1.09791621909202e-43!GO:0003735;structural constituent of ribosome;5.17749856268851e-43!GO:0016043;cellular component organization and biogenesis;7.05786779556878e-43!GO:0015031;protein transport;2.31973200421396e-41!GO:0033036;macromolecule localization;7.36001288923191e-41!GO:0044429;mitochondrial part;3.87985024612276e-40!GO:0005829;cytosol;1.00458612919366e-39!GO:0031981;nuclear lumen;4.89448021743228e-39!GO:0045184;establishment of protein localization;8.41457302607207e-39!GO:0009058;biosynthetic process;2.09309553673722e-38!GO:0008104;protein localization;5.46142934253038e-38!GO:0009059;macromolecule biosynthetic process;1.10806309276243e-37!GO:0033279;ribosomal subunit;3.51736838810535e-37!GO:0044249;cellular biosynthetic process;7.5960830014088e-37!GO:0031967;organelle envelope;3.75423826400358e-35!GO:0031975;envelope;8.34629882748725e-35!GO:0043283;biopolymer metabolic process;9.35981096576794e-35!GO:0016071;mRNA metabolic process;3.01907118302479e-34!GO:0008380;RNA splicing;3.29906031100928e-32!GO:0046907;intracellular transport;7.74491572533487e-32!GO:0010467;gene expression;8.08808059465864e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.31974342202175e-31!GO:0065003;macromolecular complex assembly;5.39958806024203e-30!GO:0006397;mRNA processing;7.95415015346935e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.07573801027228e-29!GO:0043228;non-membrane-bound organelle;2.0841856838939e-29!GO:0043232;intracellular non-membrane-bound organelle;2.0841856838939e-29!GO:0006886;intracellular protein transport;5.62722629241815e-28!GO:0006996;organelle organization and biogenesis;4.09958827655378e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22013439273952e-26!GO:0022607;cellular component assembly;2.60634767125743e-26!GO:0005740;mitochondrial envelope;1.54095620655556e-25!GO:0031966;mitochondrial membrane;5.60134317867749e-24!GO:0005654;nucleoplasm;1.5108889592384e-23!GO:0019866;organelle inner membrane;1.94507417847598e-23!GO:0006259;DNA metabolic process;6.90524867302705e-23!GO:0005681;spliceosome;7.72871640708566e-23!GO:0016462;pyrophosphatase activity;1.14236010677591e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1665372671677e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.9984543023137e-22!GO:0017111;nucleoside-triphosphatase activity;4.70595552099582e-22!GO:0005743;mitochondrial inner membrane;6.46615614640801e-22!GO:0044445;cytosolic part;1.31938862247149e-21!GO:0006119;oxidative phosphorylation;1.58805805672453e-21!GO:0005783;endoplasmic reticulum;4.17805013173364e-21!GO:0000166;nucleotide binding;1.97545116160561e-20!GO:0006457;protein folding;2.05392860611592e-20!GO:0051641;cellular localization;2.41738255669312e-20!GO:0051649;establishment of cellular localization;2.73063962719594e-20!GO:0007049;cell cycle;3.52240166973332e-20!GO:0012505;endomembrane system;7.12552376850531e-20!GO:0015934;large ribosomal subunit;2.50680057975824e-19!GO:0044451;nucleoplasm part;3.22226144219591e-19!GO:0015935;small ribosomal subunit;7.94424988793774e-19!GO:0048770;pigment granule;1.71526551426355e-18!GO:0042470;melanosome;1.71526551426355e-18!GO:0044455;mitochondrial membrane part;2.41977567625302e-18!GO:0044432;endoplasmic reticulum part;1.62071199957217e-17!GO:0031980;mitochondrial lumen;1.62071199957217e-17!GO:0005759;mitochondrial matrix;1.62071199957217e-17!GO:0022618;protein-RNA complex assembly;5.23821038412177e-17!GO:0051186;cofactor metabolic process;5.36628747239205e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.327791614202e-16!GO:0005730;nucleolus;1.7194779840106e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.26302498615617e-16!GO:0005746;mitochondrial respiratory chain;5.06163072352667e-16!GO:0016874;ligase activity;5.558272291077e-16!GO:0043285;biopolymer catabolic process;5.76675362218561e-16!GO:0005794;Golgi apparatus;8.29719105753742e-16!GO:0003676;nucleic acid binding;2.2329313548997e-15!GO:0044265;cellular macromolecule catabolic process;2.7612353233722e-15!GO:0008134;transcription factor binding;2.96242894510024e-15!GO:0022402;cell cycle process;3.66710615057539e-15!GO:0000278;mitotic cell cycle;4.89170577544763e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.94229134620014e-15!GO:0006512;ubiquitin cycle;5.91813722329999e-15!GO:0032553;ribonucleotide binding;5.93345703478228e-15!GO:0032555;purine ribonucleotide binding;5.93345703478228e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.4643682825033e-15!GO:0003954;NADH dehydrogenase activity;8.4643682825033e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.4643682825033e-15!GO:0008135;translation factor activity, nucleic acid binding;8.86288200721525e-15!GO:0019941;modification-dependent protein catabolic process;9.15027171450554e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.15027171450554e-15!GO:0009057;macromolecule catabolic process;9.42493606100986e-15!GO:0005761;mitochondrial ribosome;9.55557889688392e-15!GO:0000313;organellar ribosome;9.55557889688392e-15!GO:0017076;purine nucleotide binding;9.55557889688392e-15!GO:0044257;cellular protein catabolic process;1.16458089472394e-14!GO:0048193;Golgi vesicle transport;1.54861239552579e-14!GO:0030163;protein catabolic process;1.96331883281065e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.05885447465945e-14!GO:0044248;cellular catabolic process;6.15918018999723e-14!GO:0051082;unfolded protein binding;6.22463252633362e-14!GO:0006605;protein targeting;7.55149941165372e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.04012278891218e-14!GO:0006974;response to DNA damage stimulus;1.46361605120917e-13!GO:0006732;coenzyme metabolic process;3.90008782397375e-13!GO:0042254;ribosome biogenesis and assembly;4.14052042675104e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.83568413176048e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.67363710939719e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.13638418320081e-13!GO:0045271;respiratory chain complex I;9.13638418320081e-13!GO:0005747;mitochondrial respiratory chain complex I;9.13638418320081e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.31619293107328e-12!GO:0042773;ATP synthesis coupled electron transport;1.31619293107328e-12!GO:0016192;vesicle-mediated transport;1.73094882125328e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.39336353733988e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.40092484786637e-12!GO:0005793;ER-Golgi intermediate compartment;2.95062356934886e-12!GO:0003743;translation initiation factor activity;3.06258885270147e-12!GO:0005694;chromosome;4.16959699541274e-12!GO:0005524;ATP binding;4.69773872557831e-12!GO:0016070;RNA metabolic process;8.5466619538006e-12!GO:0000087;M phase of mitotic cell cycle;9.84384860215705e-12!GO:0005789;endoplasmic reticulum membrane;1.00601334133018e-11!GO:0032559;adenyl ribonucleotide binding;1.18938268905498e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.25676816530601e-11!GO:0000375;RNA splicing, via transesterification reactions;1.25676816530601e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.25676816530601e-11!GO:0007067;mitosis;1.51714512866427e-11!GO:0030554;adenyl nucleotide binding;2.70208796054915e-11!GO:0016887;ATPase activity;3.02780329442604e-11!GO:0009259;ribonucleotide metabolic process;3.17250510334478e-11!GO:0006413;translational initiation;5.65585249780365e-11!GO:0044427;chromosomal part;7.86204438238752e-11!GO:0006163;purine nucleotide metabolic process;8.38490844438154e-11!GO:0006281;DNA repair;8.73705403398226e-11!GO:0012501;programmed cell death;8.89431648077247e-11!GO:0043412;biopolymer modification;1.41557028313826e-10!GO:0042623;ATPase activity, coupled;1.47924220333901e-10!GO:0006915;apoptosis;1.53428419924647e-10!GO:0003712;transcription cofactor activity;1.7253428090178e-10!GO:0048523;negative regulation of cellular process;1.84719740586392e-10!GO:0009150;purine ribonucleotide metabolic process;2.38138306584624e-10!GO:0016604;nuclear body;3.36853017682744e-10!GO:0005635;nuclear envelope;3.45336521752882e-10!GO:0008639;small protein conjugating enzyme activity;4.39197845953151e-10!GO:0009055;electron carrier activity;4.5133513666499e-10!GO:0006260;DNA replication;5.23317088837828e-10!GO:0022403;cell cycle phase;5.83057598834563e-10!GO:0006164;purine nucleotide biosynthetic process;6.12442530526184e-10!GO:0044453;nuclear membrane part;8.05512403629917e-10!GO:0009260;ribonucleotide biosynthetic process;8.66600023874385e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.02060055594741e-09!GO:0004842;ubiquitin-protein ligase activity;1.04038985475216e-09!GO:0031965;nuclear membrane;1.08069682461358e-09!GO:0051301;cell division;1.16524669016886e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.65613650636124e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.72998597044727e-09!GO:0006464;protein modification process;1.88207253829832e-09!GO:0008219;cell death;1.8839460719966e-09!GO:0016265;death;1.8839460719966e-09!GO:0006399;tRNA metabolic process;1.90283963290037e-09!GO:0004386;helicase activity;1.90997178900647e-09!GO:0051726;regulation of cell cycle;1.98632182589327e-09!GO:0009719;response to endogenous stimulus;2.14787790039909e-09!GO:0000074;regulation of progression through cell cycle;2.3561751167157e-09!GO:0019787;small conjugating protein ligase activity;2.50234771122223e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.52673681655446e-09!GO:0009141;nucleoside triphosphate metabolic process;2.60330765193753e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.97523855226816e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.97523855226816e-09!GO:0006446;regulation of translational initiation;3.57753415878867e-09!GO:0051276;chromosome organization and biogenesis;6.49864794842189e-09!GO:0048519;negative regulation of biological process;6.5112543776873e-09!GO:0003924;GTPase activity;6.69769517110837e-09!GO:0006366;transcription from RNA polymerase II promoter;8.13520760457711e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.17803518772044e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.19618164380139e-09!GO:0006913;nucleocytoplasmic transport;8.20521896031628e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04796447084703e-08!GO:0005788;endoplasmic reticulum lumen;1.11277604591498e-08!GO:0065004;protein-DNA complex assembly;1.34006858447915e-08!GO:0008026;ATP-dependent helicase activity;1.35597356009925e-08!GO:0000279;M phase;1.60531329599847e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.78017091582034e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.78017091582034e-08!GO:0051169;nuclear transport;1.78309522286857e-08!GO:0016881;acid-amino acid ligase activity;2.00908827536609e-08!GO:0051188;cofactor biosynthetic process;2.015288683561e-08!GO:0006364;rRNA processing;2.22796035519459e-08!GO:0009056;catabolic process;2.47654588673083e-08!GO:0008565;protein transporter activity;2.57131994008901e-08!GO:0009117;nucleotide metabolic process;2.65556195546611e-08!GO:0009060;aerobic respiration;2.67436708938111e-08!GO:0016491;oxidoreductase activity;2.72138351244098e-08!GO:0046034;ATP metabolic process;2.98112674325598e-08!GO:0015986;ATP synthesis coupled proton transport;3.2039801096585e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.2039801096585e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.26077889551279e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.26077889551279e-08!GO:0016072;rRNA metabolic process;3.30216473347402e-08!GO:0006461;protein complex assembly;3.72121321235896e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.6215404334194e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.6215404334194e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.6215404334194e-08!GO:0043687;post-translational protein modification;4.83977054423623e-08!GO:0051246;regulation of protein metabolic process;5.56850301112341e-08!GO:0016607;nuclear speck;5.59436372803234e-08!GO:0030120;vesicle coat;6.33728645978343e-08!GO:0030662;coated vesicle membrane;6.33728645978343e-08!GO:0016787;hydrolase activity;6.51530035423268e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.84808971603287e-08!GO:0043038;amino acid activation;8.25054011778264e-08!GO:0006418;tRNA aminoacylation for protein translation;8.25054011778264e-08!GO:0043039;tRNA aminoacylation;8.25054011778264e-08!GO:0005643;nuclear pore;1.04758806456966e-07!GO:0065002;intracellular protein transport across a membrane;1.07015033440432e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.07941496724492e-07!GO:0045333;cellular respiration;1.09928674718701e-07!GO:0019829;cation-transporting ATPase activity;1.25263092855289e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.41257538172494e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.46458239878227e-07!GO:0000785;chromatin;2.85337270157641e-07!GO:0006754;ATP biosynthetic process;2.97176685120931e-07!GO:0006753;nucleoside phosphate metabolic process;2.97176685120931e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.98315870998273e-07!GO:0005667;transcription factor complex;3.33237988548968e-07!GO:0043067;regulation of programmed cell death;3.35258370632544e-07!GO:0015630;microtubule cytoskeleton;3.56456525138738e-07!GO:0042981;regulation of apoptosis;3.70247917248507e-07!GO:0006323;DNA packaging;3.88564282288758e-07!GO:0006099;tricarboxylic acid cycle;4.1890307267279e-07!GO:0046356;acetyl-CoA catabolic process;4.1890307267279e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.37712174234173e-07!GO:0043069;negative regulation of programmed cell death;4.51062749030547e-07!GO:0051187;cofactor catabolic process;4.52620930371138e-07!GO:0017038;protein import;4.71510991429675e-07!GO:0044431;Golgi apparatus part;6.98706447144101e-07!GO:0048475;coated membrane;6.98706447144101e-07!GO:0030117;membrane coat;6.98706447144101e-07!GO:0005768;endosome;7.92567963090792e-07!GO:0043066;negative regulation of apoptosis;7.92567963090792e-07!GO:0006333;chromatin assembly or disassembly;8.18008096795107e-07!GO:0009108;coenzyme biosynthetic process;9.93691130704483e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.97094466542984e-07!GO:0006916;anti-apoptosis;9.98571521148219e-07!GO:0046930;pore complex;1.05488195469034e-06!GO:0043566;structure-specific DNA binding;1.10049436934973e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.13065364868932e-06!GO:0009109;coenzyme catabolic process;1.36773779278983e-06!GO:0006084;acetyl-CoA metabolic process;1.38089739070098e-06!GO:0006334;nucleosome assembly;1.72196078416252e-06!GO:0004298;threonine endopeptidase activity;2.12002495771636e-06!GO:0045259;proton-transporting ATP synthase complex;2.14004949292593e-06!GO:0003697;single-stranded DNA binding;2.20496664340222e-06!GO:0016779;nucleotidyltransferase activity;2.31911302064328e-06!GO:0032446;protein modification by small protein conjugation;2.76113483985292e-06!GO:0006403;RNA localization;2.8355300442308e-06!GO:0050794;regulation of cellular process;3.0066196251144e-06!GO:0050657;nucleic acid transport;3.10590685462365e-06!GO:0051236;establishment of RNA localization;3.10590685462365e-06!GO:0050658;RNA transport;3.10590685462365e-06!GO:0016567;protein ubiquitination;3.9334210886174e-06!GO:0016853;isomerase activity;4.75506736530932e-06!GO:0007005;mitochondrion organization and biogenesis;5.99636096415469e-06!GO:0005762;mitochondrial large ribosomal subunit;6.16779474032778e-06!GO:0000315;organellar large ribosomal subunit;6.16779474032778e-06!GO:0000245;spliceosome assembly;6.63903848052222e-06!GO:0031324;negative regulation of cellular metabolic process;6.67862046531629e-06!GO:0006613;cotranslational protein targeting to membrane;8.2792203517035e-06!GO:0005770;late endosome;9.49507090647136e-06!GO:0016563;transcription activator activity;1.08981306256092e-05!GO:0005525;GTP binding;1.09286680165381e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.13908287716766e-05!GO:0048522;positive regulation of cellular process;1.31241314172262e-05!GO:0003713;transcription coactivator activity;1.31336677496672e-05!GO:0045454;cell redox homeostasis;1.35501957024211e-05!GO:0006752;group transfer coenzyme metabolic process;1.37471240976724e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.41531829758032e-05!GO:0016859;cis-trans isomerase activity;1.46118947149326e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.7062199428266e-05!GO:0005813;centrosome;1.70854594436137e-05!GO:0005798;Golgi-associated vesicle;1.72130469740191e-05!GO:0044440;endosomal part;1.76893416793928e-05!GO:0010008;endosome membrane;1.76893416793928e-05!GO:0031497;chromatin assembly;1.76893416793928e-05!GO:0003724;RNA helicase activity;2.22277884334666e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.27881745229765e-05!GO:0031988;membrane-bound vesicle;2.30025074962111e-05!GO:0005773;vacuole;2.69504752577812e-05!GO:0030867;rough endoplasmic reticulum membrane;2.73750367544471e-05!GO:0000151;ubiquitin ligase complex;2.73754009910615e-05!GO:0000139;Golgi membrane;2.90852045543065e-05!GO:0005048;signal sequence binding;2.92505694128467e-05!GO:0006950;response to stress;3.66967844694582e-05!GO:0006091;generation of precursor metabolites and energy;3.75173921682825e-05!GO:0005769;early endosome;4.14664009576818e-05!GO:0032561;guanyl ribonucleotide binding;4.39996485486114e-05!GO:0019001;guanyl nucleotide binding;4.39996485486114e-05!GO:0031982;vesicle;4.48622391087846e-05!GO:0031410;cytoplasmic vesicle;5.00926759081856e-05!GO:0016564;transcription repressor activity;5.12374762592202e-05!GO:0005815;microtubule organizing center;5.47229923770359e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.53100792265367e-05!GO:0009892;negative regulation of metabolic process;5.68136325273976e-05!GO:0016740;transferase activity;5.74335927584843e-05!GO:0003714;transcription corepressor activity;5.76189203624051e-05!GO:0006793;phosphorus metabolic process;5.84136078657719e-05!GO:0006796;phosphate metabolic process;5.84136078657719e-05!GO:0045786;negative regulation of progression through cell cycle;7.41380568053774e-05!GO:0051170;nuclear import;7.79845960389635e-05!GO:0051028;mRNA transport;8.00120841109677e-05!GO:0031252;leading edge;9.74051491023429e-05!GO:0009165;nucleotide biosynthetic process;0.000104472576613689!GO:0006612;protein targeting to membrane;0.000105178916537189!GO:0051789;response to protein stimulus;0.000114828688366588!GO:0006986;response to unfolded protein;0.000114828688366588!GO:0000323;lytic vacuole;0.000116220130766486!GO:0005764;lysosome;0.000116220130766486!GO:0043021;ribonucleoprotein binding;0.000125688918271895!GO:0008654;phospholipid biosynthetic process;0.00013464369826835!GO:0005819;spindle;0.000136043339240233!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000139890871776015!GO:0006606;protein import into nucleus;0.000140088021775509!GO:0019843;rRNA binding;0.000145433841077725!GO:0006261;DNA-dependent DNA replication;0.000173461081561608!GO:0016310;phosphorylation;0.000187420963085034!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00018938706983803!GO:0015980;energy derivation by oxidation of organic compounds;0.000192279681081074!GO:0051427;hormone receptor binding;0.000228966809031748!GO:0033116;ER-Golgi intermediate compartment membrane;0.000233582980677468!GO:0000314;organellar small ribosomal subunit;0.000257938175132282!GO:0005763;mitochondrial small ribosomal subunit;0.000257938175132282!GO:0005885;Arp2/3 protein complex;0.000342706995415402!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000356234351658668!GO:0005905;coated pit;0.000381927546747909!GO:0051329;interphase of mitotic cell cycle;0.000432879229489771!GO:0004576;oligosaccharyl transferase activity;0.000445177683499117!GO:0019867;outer membrane;0.000465023901969959!GO:0008250;oligosaccharyl transferase complex;0.000479714428781474!GO:0035257;nuclear hormone receptor binding;0.000484506456829672!GO:0007051;spindle organization and biogenesis;0.000486094654450512!GO:0043623;cellular protein complex assembly;0.00050123755594996!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000512339067398985!GO:0030663;COPI coated vesicle membrane;0.000513276259287046!GO:0030126;COPI vesicle coat;0.000513276259287046!GO:0003899;DNA-directed RNA polymerase activity;0.00053324430967169!GO:0031968;organelle outer membrane;0.000539231186086643!GO:0006414;translational elongation;0.000560706007977684!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000599015322126797!GO:0030036;actin cytoskeleton organization and biogenesis;0.000599974985053414!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000611170401720785!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000623774825063676!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000629308868779937!GO:0006383;transcription from RNA polymerase III promoter;0.00063550875234783!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000657214936850692!GO:0000775;chromosome, pericentric region;0.000660328551859748!GO:0030133;transport vesicle;0.000667713211759412!GO:0007243;protein kinase cascade;0.000691172184313848!GO:0000075;cell cycle checkpoint;0.000766702057866091!GO:0042802;identical protein binding;0.000798064007087353!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000804051965597731!GO:0050789;regulation of biological process;0.000822009614069905!GO:0008186;RNA-dependent ATPase activity;0.000832527721365545!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000936928918479152!GO:0016363;nuclear matrix;0.000936928918479152!GO:0016481;negative regulation of transcription;0.000949234474926951!GO:0048518;positive regulation of biological process;0.00103652049111152!GO:0031072;heat shock protein binding;0.00103652049111152!GO:0051920;peroxiredoxin activity;0.00109622327095642!GO:0018196;peptidyl-asparagine modification;0.00112200468169054!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00112200468169054!GO:0005791;rough endoplasmic reticulum;0.00114889850520828!GO:0003690;double-stranded DNA binding;0.00115148494185498!GO:0001558;regulation of cell growth;0.00119068924279393!GO:0016568;chromatin modification;0.00120288801568806!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00125331696055923!GO:0015399;primary active transmembrane transporter activity;0.00125331696055923!GO:0030137;COPI-coated vesicle;0.00125758135352894!GO:0043681;protein import into mitochondrion;0.0012699121495652!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00127632998960597!GO:0045941;positive regulation of transcription;0.00132859415825695!GO:0051252;regulation of RNA metabolic process;0.00133623288597994!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00141950393383989!GO:0051325;interphase;0.00142124977150876!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00142124977150876!GO:0051052;regulation of DNA metabolic process;0.00145540508438312!GO:0046483;heterocycle metabolic process;0.00146913483092021!GO:0048500;signal recognition particle;0.00147886452282404!GO:0006626;protein targeting to mitochondrion;0.00150062075842776!GO:0016049;cell growth;0.00153133645925569!GO:0007010;cytoskeleton organization and biogenesis;0.00154135357164199!GO:0008361;regulation of cell size;0.00156925288260362!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00158411407983394!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00158411407983394!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00158411407983394!GO:0000786;nucleosome;0.00165043212165121!GO:0019899;enzyme binding;0.00186870573581369!GO:0051168;nuclear export;0.00192819353184543!GO:0043284;biopolymer biosynthetic process;0.00206722012984359!GO:0006979;response to oxidative stress;0.00212234044279266!GO:0004004;ATP-dependent RNA helicase activity;0.00216018060215979!GO:0005741;mitochondrial outer membrane;0.00225910919834409!GO:0006891;intra-Golgi vesicle-mediated transport;0.00242199081275943!GO:0065009;regulation of a molecular function;0.00256904979239294!GO:0030127;COPII vesicle coat;0.00268944090461142!GO:0012507;ER to Golgi transport vesicle membrane;0.00268944090461142!GO:0044452;nucleolar part;0.00272342903019714!GO:0005657;replication fork;0.00289028978376241!GO:0008243;plasminogen activator activity;0.00289677750536139!GO:0030134;ER to Golgi transport vesicle;0.00291886192250937!GO:0046474;glycerophospholipid biosynthetic process;0.00296845839904603!GO:0016044;membrane organization and biogenesis;0.00309880549934703!GO:0030176;integral to endoplasmic reticulum membrane;0.00310271451360268!GO:0008632;apoptotic program;0.00311840034669324!GO:0003684;damaged DNA binding;0.00315502850636076!GO:0008139;nuclear localization sequence binding;0.00315568502214762!GO:0030658;transport vesicle membrane;0.00318269271165955!GO:0045893;positive regulation of transcription, DNA-dependent;0.00322982489282189!GO:0009967;positive regulation of signal transduction;0.00330171994932089!GO:0044262;cellular carbohydrate metabolic process;0.00346534503315328!GO:0008047;enzyme activator activity;0.00355562814757769!GO:0000082;G1/S transition of mitotic cell cycle;0.00369542987464763!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00379816776000324!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00379816776000324!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00385017948486631!GO:0045047;protein targeting to ER;0.00385017948486631!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00387820894843466!GO:0008312;7S RNA binding;0.00396601769150071!GO:0008033;tRNA processing;0.0043068912534574!GO:0009112;nucleobase metabolic process;0.00432232145218887!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00444460093940701!GO:0030029;actin filament-based process;0.00446699193444278!GO:0006595;polyamine metabolic process;0.00463019889078487!GO:0030132;clathrin coat of coated pit;0.00473635720915201!GO:0043488;regulation of mRNA stability;0.00486648063743977!GO:0043487;regulation of RNA stability;0.00486648063743977!GO:0008094;DNA-dependent ATPase activity;0.00500713945338661!GO:0003729;mRNA binding;0.00506282292698224!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00524850234518741!GO:0048144;fibroblast proliferation;0.00528799528016792!GO:0048145;regulation of fibroblast proliferation;0.00528799528016792!GO:0006275;regulation of DNA replication;0.00541369738210533!GO:0008180;signalosome;0.00545800626411493!GO:0017166;vinculin binding;0.00581066440053095!GO:0048146;positive regulation of fibroblast proliferation;0.0059579202836966!GO:0030027;lamellipodium;0.00598184030470395!GO:0006740;NADPH regeneration;0.00600035960952813!GO:0006098;pentose-phosphate shunt;0.00600035960952813!GO:0007006;mitochondrial membrane organization and biogenesis;0.00617961095407997!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00626451472027851!GO:0005874;microtubule;0.00648106711455128!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00648106711455128!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00648106711455128!GO:0016197;endosome transport;0.00650445402150399!GO:0006892;post-Golgi vesicle-mediated transport;0.00651325974864528!GO:0048487;beta-tubulin binding;0.00676270509589541!GO:0006302;double-strand break repair;0.00689003046140817!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00723814092627407!GO:0051087;chaperone binding;0.00729719090641276!GO:0015992;proton transport;0.00729719090641276!GO:0000776;kinetochore;0.00737280105824832!GO:0006401;RNA catabolic process;0.00744621258376183!GO:0031625;ubiquitin protein ligase binding;0.00760916213764198!GO:0046489;phosphoinositide biosynthetic process;0.00760977528412699!GO:0043492;ATPase activity, coupled to movement of substances;0.00771177695591641!GO:0003678;DNA helicase activity;0.0077497457796772!GO:0006352;transcription initiation;0.00778141584156316!GO:0006402;mRNA catabolic process;0.00787028450044515!GO:0022415;viral reproductive process;0.00802685466930928!GO:0006509;membrane protein ectodomain proteolysis;0.00807597151723295!GO:0033619;membrane protein proteolysis;0.00807597151723295!GO:0006818;hydrogen transport;0.00811914084860686!GO:0030660;Golgi-associated vesicle membrane;0.00811914084860686!GO:0030880;RNA polymerase complex;0.00830759532638633!GO:0045045;secretory pathway;0.00861979667642733!GO:0000339;RNA cap binding;0.00904476453590499!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00913693346824516!GO:0015631;tubulin binding;0.0093269013292205!GO:0009116;nucleoside metabolic process;0.00941059542637178!GO:0006289;nucleotide-excision repair;0.00981223557448815!GO:0030659;cytoplasmic vesicle membrane;0.00981901727039227!GO:0007050;cell cycle arrest;0.0107684660237868!GO:0007040;lysosome organization and biogenesis;0.0109626141401127!GO:0006417;regulation of translation;0.0109838912359119!GO:0005684;U2-dependent spliceosome;0.011172974818874!GO:0006984;ER-nuclear signaling pathway;0.0111819242587997!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0114216047025843!GO:0043022;ribosome binding;0.0118508446190637!GO:0006778;porphyrin metabolic process;0.0118920879913384!GO:0033013;tetrapyrrole metabolic process;0.0118920879913384!GO:0022890;inorganic cation transmembrane transporter activity;0.011914998916064!GO:0005869;dynactin complex;0.0119982623661191!GO:0005862;muscle thin filament tropomyosin;0.012281961203311!GO:0032984;macromolecular complex disassembly;0.0123937897528884!GO:0006310;DNA recombination;0.0126058664033334!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0126588028551347!GO:0016251;general RNA polymerase II transcription factor activity;0.0126588028551347!GO:0000059;protein import into nucleus, docking;0.012762964183569!GO:0048471;perinuclear region of cytoplasm;0.0128025819919336!GO:0031124;mRNA 3'-end processing;0.0131594204388287!GO:0003746;translation elongation factor activity;0.0133775284615645!GO:0046467;membrane lipid biosynthetic process;0.0135440821194568!GO:0004177;aminopeptidase activity;0.0136236471714333!GO:0000209;protein polyubiquitination;0.0137828301309331!GO:0007033;vacuole organization and biogenesis;0.0137966171989378!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0143508310329902!GO:0035258;steroid hormone receptor binding;0.0143508310329902!GO:0030118;clathrin coat;0.0144904061343171!GO:0030521;androgen receptor signaling pathway;0.0145261371157627!GO:0007088;regulation of mitosis;0.0152079959430888!GO:0006839;mitochondrial transport;0.0154582551763938!GO:0007093;mitotic cell cycle checkpoint;0.0158971026441016!GO:0031902;late endosome membrane;0.0161987184181538!GO:0005832;chaperonin-containing T-complex;0.0163989508270106!GO:0047485;protein N-terminus binding;0.016565368687709!GO:0051539;4 iron, 4 sulfur cluster binding;0.0165732104556449!GO:0006769;nicotinamide metabolic process;0.0167177610328191!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0167177610328191!GO:0015002;heme-copper terminal oxidase activity;0.0167177610328191!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0167177610328191!GO:0004129;cytochrome-c oxidase activity;0.0167177610328191!GO:0008283;cell proliferation;0.0167540844468074!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0167667548715837!GO:0000428;DNA-directed RNA polymerase complex;0.0167667548715837!GO:0044433;cytoplasmic vesicle part;0.016909521312472!GO:0016272;prefoldin complex;0.016909521312472!GO:0046519;sphingoid metabolic process;0.016909521312472!GO:0005581;collagen;0.0175809066815222!GO:0031901;early endosome membrane;0.017671923080652!GO:0051271;negative regulation of cell motility;0.0177121152488557!GO:0007052;mitotic spindle organization and biogenesis;0.0178638250843075!GO:0005669;transcription factor TFIID complex;0.0181005416564048!GO:0048468;cell development;0.0182694386978555!GO:0006650;glycerophospholipid metabolic process;0.0190730772622626!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0192491216609474!GO:0019752;carboxylic acid metabolic process;0.019585325883462!GO:0045936;negative regulation of phosphate metabolic process;0.0201498914878867!GO:0006378;mRNA polyadenylation;0.020312237739816!GO:0042168;heme metabolic process;0.0203887131812545!GO:0043241;protein complex disassembly;0.0205347281799229!GO:0006749;glutathione metabolic process;0.0209039693307847!GO:0006739;NADP metabolic process;0.0210252288494152!GO:0007264;small GTPase mediated signal transduction;0.0214121944517548!GO:0006082;organic acid metabolic process;0.0215868648468091!GO:0005637;nuclear inner membrane;0.0218740119634784!GO:0030041;actin filament polymerization;0.0222176903838064!GO:0051540;metal cluster binding;0.0225852467673892!GO:0051536;iron-sulfur cluster binding;0.0225852467673892!GO:0000049;tRNA binding;0.0226811047696774!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0228687622882399!GO:0016408;C-acyltransferase activity;0.0231550389419186!GO:0003682;chromatin binding;0.0231550389419186!GO:0006733;oxidoreduction coenzyme metabolic process;0.023272870079589!GO:0003711;transcription elongation regulator activity;0.023281021473755!GO:0031529;ruffle organization and biogenesis;0.0234865624050317!GO:0000792;heterochromatin;0.0235231000244789!GO:0008154;actin polymerization and/or depolymerization;0.0235231000244789!GO:0050681;androgen receptor binding;0.0240350658397769!GO:0022408;negative regulation of cell-cell adhesion;0.024184342501194!GO:0051270;regulation of cell motility;0.0243401120721996!GO:0008637;apoptotic mitochondrial changes;0.024470893835258!GO:0005774;vacuolar membrane;0.0248810119626785!GO:0005096;GTPase activator activity;0.0252322858376366!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0254250040847679!GO:0016584;nucleosome positioning;0.0254307762835995!GO:0009303;rRNA transcription;0.0255150724971238!GO:0008022;protein C-terminus binding;0.026120854784058!GO:0006220;pyrimidine nucleotide metabolic process;0.0264231935187902!GO:0048660;regulation of smooth muscle cell proliferation;0.0265351138550673!GO:0006118;electron transport;0.0265826704614323!GO:0065007;biological regulation;0.0271218962745865!GO:0006007;glucose catabolic process;0.0271379305522995!GO:0004527;exonuclease activity;0.0279214063862833!GO:0006611;protein export from nucleus;0.0281976694297842!GO:0043624;cellular protein complex disassembly;0.0283307571345217!GO:0007021;tubulin folding;0.0283307571345217!GO:0001726;ruffle;0.0283695867675899!GO:0012506;vesicle membrane;0.0284391548980831!GO:0005876;spindle microtubule;0.0284391548980831!GO:0046426;negative regulation of JAK-STAT cascade;0.0289247860337948!GO:0019222;regulation of metabolic process;0.0290857415062547!GO:0031418;L-ascorbic acid binding;0.0292939725067253!GO:0015036;disulfide oxidoreductase activity;0.0294805037037908!GO:0019206;nucleoside kinase activity;0.0294968682418392!GO:0040008;regulation of growth;0.0302228629948864!GO:0005100;Rho GTPase activator activity;0.0305928039965725!GO:0032508;DNA duplex unwinding;0.0305928039965725!GO:0032392;DNA geometric change;0.0305928039965725!GO:0030508;thiol-disulfide exchange intermediate activity;0.0305928039965725!GO:0006672;ceramide metabolic process;0.0308873735744137!GO:0004287;prolyl oligopeptidase activity;0.0311249720119213!GO:0031326;regulation of cellular biosynthetic process;0.0312854854937862!GO:0006144;purine base metabolic process;0.0318672895931364!GO:0008092;cytoskeletal protein binding;0.0322315351439332!GO:0009889;regulation of biosynthetic process;0.0322484688597422!GO:0006607;NLS-bearing substrate import into nucleus;0.0325192581463891!GO:0045792;negative regulation of cell size;0.0329968373370547!GO:0051101;regulation of DNA binding;0.0329968373370547!GO:0005801;cis-Golgi network;0.0330141437255397!GO:0006376;mRNA splice site selection;0.0335722809132392!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0335722809132392!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0341499089211185!GO:0016126;sterol biosynthetic process;0.0341499089211185!GO:0050790;regulation of catalytic activity;0.0341578748817354!GO:0032940;secretion by cell;0.0342052244234937!GO:0008610;lipid biosynthetic process;0.0342709197162169!GO:0009893;positive regulation of metabolic process;0.0343198223715913!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0343930408106255!GO:0003923;GPI-anchor transamidase activity;0.0343930408106255!GO:0016255;attachment of GPI anchor to protein;0.0343930408106255!GO:0042765;GPI-anchor transamidase complex;0.0343930408106255!GO:0004003;ATP-dependent DNA helicase activity;0.0347076041443909!GO:0008538;proteasome activator activity;0.0347076041443909!GO:0030125;clathrin vesicle coat;0.0347540950827994!GO:0030665;clathrin coated vesicle membrane;0.0347540950827994!GO:0009119;ribonucleoside metabolic process;0.0357499904501955!GO:0030503;regulation of cell redox homeostasis;0.0358230447426091!GO:0035035;histone acetyltransferase binding;0.0358999700179066!GO:0003756;protein disulfide isomerase activity;0.0363523094344598!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0363523094344598!GO:0051128;regulation of cellular component organization and biogenesis;0.0364047432431768!GO:0006268;DNA unwinding during replication;0.03658288071153!GO:0006779;porphyrin biosynthetic process;0.0366957611369805!GO:0033014;tetrapyrrole biosynthetic process;0.0366957611369805!GO:0030032;lamellipodium biogenesis;0.0373906669021211!GO:0030308;negative regulation of cell growth;0.0377075617692609!GO:0051287;NAD binding;0.0378380216417259!GO:0045892;negative regulation of transcription, DNA-dependent;0.0379787197161999!GO:0016860;intramolecular oxidoreductase activity;0.0380863963335183!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0381159293351275!GO:0040013;negative regulation of locomotion;0.0390236757598391!GO:0030336;negative regulation of cell migration;0.0391606094393719!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0398191533348317!GO:0022406;membrane docking;0.03995112114184!GO:0048278;vesicle docking;0.03995112114184!GO:0042326;negative regulation of phosphorylation;0.0408244557163119!GO:0000781;chromosome, telomeric region;0.0409398625362505!GO:0022411;cellular component disassembly;0.0414873091653335!GO:0008234;cysteine-type peptidase activity;0.0416150181839844!GO:0044420;extracellular matrix part;0.0417302728030679!GO:0008629;induction of apoptosis by intracellular signals;0.042430397365738!GO:0031123;RNA 3'-end processing;0.042430397365738!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0431111667468686!GO:0032200;telomere organization and biogenesis;0.0431111667468686!GO:0000723;telomere maintenance;0.0431111667468686!GO:0009225;nucleotide-sugar metabolic process;0.0433333394140363!GO:0006405;RNA export from nucleus;0.0433333394140363!GO:0050811;GABA receptor binding;0.0436637340223499!GO:0031543;peptidyl-proline dioxygenase activity;0.0440482922287339!GO:0005092;GDP-dissociation inhibitor activity;0.0444786573869071!GO:0001527;microfibril;0.0448775485219681!GO:0030833;regulation of actin filament polymerization;0.0455042171423203!GO:0004532;exoribonuclease activity;0.0458316534260358!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0458316534260358!GO:0044437;vacuolar part;0.047261961604483!GO:0050662;coenzyme binding;0.047261961604483!GO:0006904;vesicle docking during exocytosis;0.0474752777122919!GO:0030911;TPR domain binding;0.0474851392761378!GO:0031371;ubiquitin conjugating enzyme complex;0.0477042645840357!GO:0005784;translocon complex;0.0477240687366666!GO:0004674;protein serine/threonine kinase activity;0.0486945514532138!GO:0001953;negative regulation of cell-matrix adhesion;0.0492768225084041!GO:0033673;negative regulation of kinase activity;0.0498054862579547!GO:0006469;negative regulation of protein kinase activity;0.0498054862579547
|sample_id=11357
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=heart
|top_motifs=ALX4:2.24660337341;NKX2-2,8:2.0611678281;GZF1:1.74455891267;TAL1_TCF{3,4,12}:1.66044006579;NKX3-1:1.62828803762;UFEwm:1.50215090949;HOX{A5,B5}:1.39106167137;HSF1,2:1.28604303952;ZNF238:1.23192692236;ALX1:1.22822551312;SMAD1..7,9:1.15280051726;ZBTB6:1.06840503351;KLF4:1.06459140548;PAX1,9:1.05705420256;SPZ1:1.00554804108;HES1:0.975039463995;TFAP4:0.936751649923;EN1,2:0.9350394502;GLI1..3:0.934239554511;XBP1:0.915164407081;ZNF423:0.907332943014;TLX1..3_NFIC{dimer}:0.898477029068;RXR{A,B,G}:0.897931979597;PPARG:0.873049319781;GATA4:0.863945468341;POU3F1..4:0.853452521589;HMX1:0.828387304708;NFE2L2:0.802454929731;PAX8:0.788863614789;MYFfamily:0.758230829842;EBF1:0.756011010045;TFCP2:0.754574585716;ZIC1..3:0.750937715795;NR3C1:0.701214876745;TBX4,5:0.673951253564;NFIX:0.656053136259;FOXM1:0.602494027514;T:0.599611061512;TEF:0.599346348759;MYBL2:0.583066393251;NFE2L1:0.569656645436;ESRRA:0.563915312788;ZNF384:0.562934503524;TOPORS:0.560969244145;ATF6:0.492312073208;EVI1:0.489772590566;TEAD1:0.479030856967;YY1:0.456065060834;HAND1,2:0.430456047553;NANOG{mouse}:0.427323446938;TP53:0.416550825395;PRDM1:0.409912236998;FOX{I1,J2}:0.406932720521;IKZF1:0.344750327733;ARID5B:0.332296390087;BACH2:0.331570892519;MYB:0.328952880263;IRF1,2:0.320667044446;TBP:0.315647876921;NFATC1..3:0.302222737114;NR1H4:0.294004361891;HLF:0.280335499349;MZF1:0.276555958767;HOXA9_MEIS1:0.270982396162;ONECUT1,2:0.270861935075;GCM1,2:0.269883711384;FOS_FOS{B,L1}_JUN{B,D}:0.269866153879;PAX4:0.265296404455;GTF2I:0.253593414741;MAFB:0.248902408818;FOXQ1:0.230200159187;ESR1:0.223291823005;SRF:0.222548971339;bHLH_family:0.196068178641;HOX{A4,D4}:0.187650925941;RXRA_VDR{dimer}:0.156595590059;HMGA1,2:0.146511894719;HBP1_HMGB_SSRP1_UBTF:0.141323308836;PAX3,7:0.131588698475;CDC5L:0.12871404041;HOX{A6,A7,B6,B7}:0.113284707325;GFI1B:0.085489653678;PBX1:0.0841300784535;FOXL1:0.0724805710733;MTF1:0.0718169141794;TLX2:0.0577702423438;E2F1..5:0.0566523445592;LMO2:0.0558894669898;GTF2A1,2:0.0541713922751;PATZ1:0.0198762752637;ADNP_IRX_SIX_ZHX:0.0196480923199;TFDP1:0.012410963729;POU6F1:0.0110595661952;REST:0.00197252686869;PAX5:-0.000287317472401;NHLH1,2:-0.00728305910523;ZNF148:-0.00953393137328;NFIL3:-0.0113948107094;HNF1A:-0.0210283885579;CDX1,2,4:-0.0330500244911;SOX17:-0.0412247287336;FOSL2:-0.0535321257452;IRF7:-0.0571284275939;RFX1:-0.0608409683287;RUNX1..3:-0.0611452312912;ZBTB16:-0.0693067895511;FOXO1,3,4:-0.0737918535012;NKX3-2:-0.0858009477008;LEF1_TCF7_TCF7L1,2:-0.103741961306;NKX6-1,2:-0.116572850068;POU5F1:-0.119841194829;GFI1:-0.120536090366;MTE{core}:-0.12744618086;PRRX1,2:-0.134168706729;LHX3,4:-0.138228995503;RREB1:-0.138817475646;FOXD3:-0.139486134922;TFAP2{A,C}:-0.141204874434;NFKB1_REL_RELA:-0.144190455512;STAT2,4,6:-0.150906580645;HIC1:-0.161868208445;NKX2-1,4:-0.172178426448;BPTF:-0.172808478526;NFE2:-0.185990059853;ELF1,2,4:-0.190203936186;HNF4A_NR2F1,2:-0.227746684308;EGR1..3:-0.229584799197;ZFP161:-0.234698738161;DMAP1_NCOR{1,2}_SMARC:-0.254496757669;AIRE:-0.256350306425;JUN:-0.256429636339;ELK1,4_GABP{A,B1}:-0.263502826919;XCPE1{core}:-0.271422015491;AHR_ARNT_ARNT2:-0.27596875528;MED-1{core}:-0.281975774529;CEBPA,B_DDIT3:-0.284963134623;IKZF2:-0.294580035119;SPI1:-0.304234552966;SOX2:-0.308505080273;RFX2..5_RFXANK_RFXAP:-0.31345363874;ETS1,2:-0.328704719971;TFAP2B:-0.329522541558;NR6A1:-0.33356460366;NR5A1,2:-0.354276518143;CRX:-0.366636412431;POU2F1..3:-0.372445079441;DBP:-0.392566895809;ZNF143:-0.420619006326;SOX5:-0.426258935667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438191331074;MAZ:-0.455908561724;NRF1:-0.497853959631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520887293298;PDX1:-0.523365322632;SPIB:-0.524308031345;NKX2-3_NKX2-5:-0.54581571654;MEF2{A,B,C,D}:-0.622370232553;AR:-0.644294128887;SP1:-0.681673359406;CREB1:-0.694527412424;PAX6:-0.737020965147;PAX2:-0.738018310592;EP300:-0.744519600443;SNAI1..3:-0.751565437902;FOXN1:-0.753643550666;ATF5_CREB3:-0.761348281204;STAT5{A,B}:-0.763519155727;ATF2:-0.773726248321;OCT4_SOX2{dimer}:-0.785081163621;CUX2:-0.793298738071;VSX1,2:-0.810794204973;GATA6:-0.833987725551;TGIF1:-0.847112143232;ZEB1:-0.858576733664;FOXA2:-0.866828359819;RBPJ:-0.86971960047;MYOD1:-0.875846151458;NFY{A,B,C}:-0.879490889231;PITX1..3:-0.88704466379;STAT1,3:-0.890217026463;SOX{8,9,10}:-0.898392089787;SREBF1,2:-0.903938815663;FOXP1:-0.9113549349;RORA:-0.952648537723;POU1F1:-1.01140678192;NANOG:-1.02440353276;FOXP3:-1.04070599407;FOX{D1,D2}:-1.10737575857;ATF4:-1.17174533797;HIF1A:-1.2534977376;BREu{core}:-1.31310888136;FOX{F1,F2,J1}:-1.44681438811
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11357-117H7;search_select_hide=table117:FF:11357-117H7
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Preadipocyte - visceral, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11982
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage59 years old adult
sexmale
age59
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2115
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005360
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11982 CAGE DRX008417 DRR009289
Accession ID Hg19

Library idBAMCTSS
CNhs11982 DRZ000714 DRZ002099
Accession ID Hg38

Library idBAMCTSS
CNhs11982 DRZ012064 DRZ013449
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005360
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.CGTACG sRNA-Seq DRX037161 DRR041527
Accession ID Hg19

Library idBAMCTSS
SRhi10010.CGTACG DRZ007169


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.222
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.182
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.139
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.712
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.257
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.177
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.182
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0162
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00643
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.155
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.182
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.182
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.737
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.309
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.382
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.319
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11982

Jaspar motifP-value
MA0002.20.731
MA0003.10.369
MA0004.10.15
MA0006.10.293
MA0007.10.611
MA0009.10.414
MA0014.10.756
MA0017.10.779
MA0018.22.99962e-7
MA0019.10.968
MA0024.10.0368
MA0025.10.0124
MA0027.10.365
MA0028.10.174
MA0029.10.856
MA0030.10.0122
MA0031.10.0256
MA0035.20.0196
MA0038.10.00717
MA0039.20.0833
MA0040.10.459
MA0041.10.903
MA0042.10.818
MA0043.13.76556e-7
MA0046.10.231
MA0047.20.963
MA0048.10.72
MA0050.10.631
MA0051.10.264
MA0052.10.0031
MA0055.10.0362
MA0057.10.234
MA0058.10.0574
MA0059.10.804
MA0060.14.80997e-10
MA0061.10.207
MA0062.26.36122e-4
MA0065.20.362
MA0066.10.0744
MA0067.10.00481
MA0068.10.162
MA0069.10.314
MA0070.10.564
MA0071.10.951
MA0072.10.276
MA0073.10.995
MA0074.10.179
MA0076.10.0284
MA0077.10.596
MA0078.10.932
MA0079.20.448
MA0080.21.59238e-4
MA0081.10.0259
MA0083.10.332
MA0084.10.0897
MA0087.10.468
MA0088.10.169
MA0090.10.12
MA0091.10.00747
MA0092.10.486
MA0093.10.15
MA0099.20.0029
MA0100.10.476
MA0101.10.452
MA0102.20.217
MA0103.10.153
MA0104.20.289
MA0105.10.00162
MA0106.10.0194
MA0107.10.585
MA0108.20.47
MA0111.10.476
MA0112.20.0011
MA0113.10.412
MA0114.10.867
MA0115.10.653
MA0116.10.00233
MA0117.10.238
MA0119.10.0499
MA0122.10.392
MA0124.10.436
MA0125.10.175
MA0131.10.237
MA0135.10.233
MA0136.12.1831e-4
MA0137.20.424
MA0138.20.701
MA0139.10.369
MA0140.10.188
MA0141.10.427
MA0142.10.103
MA0143.10.772
MA0144.10.411
MA0145.10.312
MA0146.10.357
MA0147.10.639
MA0148.10.588
MA0149.10.791
MA0150.10.425
MA0152.10.0525
MA0153.10.135
MA0154.10.0391
MA0155.10.502
MA0156.12.54676e-4
MA0157.10.0961
MA0159.10.522
MA0160.10.571
MA0162.10.135
MA0163.13.05529e-7
MA0164.10.811
MA0258.10.105
MA0259.10.457



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11982

Novel motifP-value
10.236
100.0968
1000.889
1010.738
1020.788
1030.059
1040.958
1050.491
1060.0168
1070.0136
1080.314
1090.151
110.157
1100.127
1110.526
1120.0826
1130.355
1140.159
1150.0172
1160.0455
1170.239
1180.939
1190.703
120.239
1200.0229
1210.601
1220.0271
1230.303
1240.328
1250.177
1260.813
1270.307
1280.0978
1290.807
130.92
1300.909
1310.642
1320.862
1330.437
1340.723
1350.588
1360.824
1370.587
1380.537
1390.662
140.422
1400.31
1410.807
1420.372
1430.0242
1440.63
1450.57
1460.845
1470.269
1480.00515
1490.0146
150.547
1500.207
1510.539
1520.0728
1530.968
1540.884
1550.204
1560.479
1570.834
1580.0654
1590.472
160.0368
1600.198
1610.585
1620.53
1630.782
1640.422
1650.465
1660.193
1670.327
1680.522
1690.0124
170.39
180.081
190.0222
20.141
200.0801
210.0709
220.272
230.105
240.505
250.479
260.0637
270.109
280.412
290.0929
30.164
300.412
310.774
321.15539e-5
330.774
340.513
350.173
360.0804
370.105
380.713
390.148
40.848
400.256
410.876
420.562
430.16
440.113
450.802
460.0387
470.16
480.286
490.602
50.844
500.712
510.324
520.754
530.694
540.562
550.12
560.472
570.475
580.92
590.0128
60.716
600.405
610.589
620.31
630.332
640.488
650.165
660.506
670.261
680.306
690.777
70.808
700.405
710.0243
720.836
730.085
740.0071
750.307
760.895
770.0411
780.58
790.0122
80.0204
800.699
810.319
820.353
830.332
840.36
850.314
860.303
870.128
880.752
890.0257
90.12
900.261
910.0539
920.2
930.622
940.287
950.0908
960.197
970.534
980.774
990.00623



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11982


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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