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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession=CAGE@SAMD00005757
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000623,CL:0000723,CL:0000738,CL:0000825,CL:0000837,CL:0000838,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005757
|accession_numbers=CAGE;DRX008372;DRR009244;DRZ000669;DRZ002054;DRZ012019;DRZ013404
|accession_numbers_RNASeq=sRNA-Seq;DRX037169;DRR041535;DRZ007177
|ancestors_in_anatomy_facet=
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|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000119
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|expression_enrichment_score=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11387-118C1
|id=FF:11387-118C1
|is_a=EFO:0002091;;FF:0000002;;FF:0000119;;FF:0000210
|is_a=EFO:0002091;;FF:0000119
|is_obsolete=
|library_id=CNhs12001
|library_id_phase_based=2:CNhs12001
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11387
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CAGATC.11387
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11387
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CAGATC.11387
|name=Natural Killer Cells, donor3
|name=Natural Killer Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_cagescan=,,,
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|profile_hcage=CNhs12001,LSID837,release011,COMPLETED
|profile_hcage=CNhs12001,LSID837,release011,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_box=118
|rna_catalog_number=3H100-50-10
|rna_catalog_number=3H100-50-10
Line 56: Line 82:
|rna_tube_id=118C1
|rna_tube_id=118C1
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.CAGATC
|sample_age=53
|sample_age=53
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.76007578019509e-219!GO:0043227;membrane-bound organelle;6.25515051143049e-192!GO:0043231;intracellular membrane-bound organelle;1.4169582482272e-191!GO:0043226;organelle;1.58360636595624e-178!GO:0043229;intracellular organelle;8.22091210353835e-178!GO:0005737;cytoplasm;4.10817136979405e-124!GO:0005634;nucleus;1.17473176663397e-115!GO:0043170;macromolecule metabolic process;9.95168722124439e-104!GO:0044422;organelle part;1.04654641231597e-100!GO:0044446;intracellular organelle part;4.58967418260596e-99!GO:0044237;cellular metabolic process;1.77559300399843e-95!GO:0044238;primary metabolic process;9.60766514064356e-95!GO:0043283;biopolymer metabolic process;1.88577974436007e-80!GO:0044428;nuclear part;1.03960847333321e-77!GO:0032991;macromolecular complex;1.84542358894759e-77!GO:0044444;cytoplasmic part;3.25340438563892e-75!GO:0003723;RNA binding;1.23859298040982e-72!GO:0005515;protein binding;2.10762674713506e-70!GO:0010467;gene expression;8.17856280138567e-66!GO:0030529;ribonucleoprotein complex;2.9214207023142e-65!GO:0043233;organelle lumen;8.92457542784952e-61!GO:0031974;membrane-enclosed lumen;8.92457542784952e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.23331906986626e-58!GO:0031981;nuclear lumen;1.93577866056912e-49!GO:0019538;protein metabolic process;3.30145065599897e-49!GO:0033036;macromolecule localization;1.2458712756092e-47!GO:0044267;cellular protein metabolic process;3.63224478028143e-47!GO:0003676;nucleic acid binding;1.1241839260727e-46!GO:0044260;cellular macromolecule metabolic process;2.4368325130119e-46!GO:0015031;protein transport;5.66122985579258e-46!GO:0045184;establishment of protein localization;2.11453635687681e-44!GO:0008104;protein localization;1.05368327566405e-43!GO:0006396;RNA processing;1.55233498387935e-43!GO:0006412;translation;1.29774905350393e-42!GO:0016071;mRNA metabolic process;3.60456687931329e-41!GO:0016070;RNA metabolic process;6.39247910142234e-40!GO:0043234;protein complex;2.81914588849081e-39!GO:0008380;RNA splicing;1.2737503222013e-35!GO:0006397;mRNA processing;3.40774791292876e-34!GO:0031090;organelle membrane;9.53513167852992e-34!GO:0016043;cellular component organization and biogenesis;1.27464700827029e-33!GO:0046907;intracellular transport;1.84653456201669e-33!GO:0005840;ribosome;4.31984187625357e-33!GO:0005654;nucleoplasm;1.49649029566127e-32!GO:0009059;macromolecule biosynthetic process;3.02427286259594e-32!GO:0006886;intracellular protein transport;8.72672948894678e-32!GO:0005739;mitochondrion;3.21751661420467e-31!GO:0031967;organelle envelope;3.18537412913929e-30!GO:0031975;envelope;6.93898133691652e-30!GO:0005829;cytosol;1.84970398577024e-29!GO:0006259;DNA metabolic process;3.22791699134226e-29!GO:0003735;structural constituent of ribosome;4.78843174997983e-29!GO:0000166;nucleotide binding;1.35436165769897e-28!GO:0033279;ribosomal subunit;2.78966538861547e-27!GO:0044451;nucleoplasm part;6.09108388106829e-27!GO:0006512;ubiquitin cycle;6.18420707513822e-27!GO:0005681;spliceosome;1.01880571247316e-26!GO:0065003;macromolecular complex assembly;1.11534925110637e-26!GO:0050794;regulation of cellular process;1.47953139944052e-26!GO:0043412;biopolymer modification;2.14600167769693e-26!GO:0012501;programmed cell death;5.5311992518863e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.39800809490334e-26!GO:0006915;apoptosis;7.52547137618269e-26!GO:0051641;cellular localization;2.88514955506042e-25!GO:0051649;establishment of cellular localization;3.65764653498984e-25!GO:0008219;cell death;4.72753524084388e-25!GO:0016265;death;4.72753524084388e-25!GO:0044429;mitochondrial part;3.05030954352936e-24!GO:0022607;cellular component assembly;5.85093569685724e-24!GO:0006464;protein modification process;6.94723440006058e-24!GO:0006996;organelle organization and biogenesis;9.54025578819116e-24!GO:0009058;biosynthetic process;1.15787397132328e-23!GO:0043687;post-translational protein modification;4.79890637900345e-23!GO:0008134;transcription factor binding;5.18184841309555e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.72121636751711e-23!GO:0044249;cellular biosynthetic process;1.0511561569845e-22!GO:0044445;cytosolic part;9.97740093397019e-22!GO:0032553;ribonucleotide binding;1.03833933698833e-20!GO:0032555;purine ribonucleotide binding;1.03833933698833e-20!GO:0019222;regulation of metabolic process;2.46326319915824e-20!GO:0050789;regulation of biological process;4.80360743817642e-20!GO:0019941;modification-dependent protein catabolic process;8.57106307274517e-20!GO:0043632;modification-dependent macromolecule catabolic process;8.57106307274517e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;9.22074401278528e-20!GO:0006511;ubiquitin-dependent protein catabolic process;1.10521377968663e-19!GO:0017076;purine nucleotide binding;1.13449241335568e-19!GO:0044257;cellular protein catabolic process;2.92404604717314e-19!GO:0044265;cellular macromolecule catabolic process;4.22162217843105e-19!GO:0017111;nucleoside-triphosphatase activity;6.48545418275625e-19!GO:0016462;pyrophosphatase activity;1.31585024218654e-18!GO:0006605;protein targeting;1.47815935136406e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.57440337684894e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.09409617875381e-18!GO:0016874;ligase activity;2.96332319419799e-18!GO:0006913;nucleocytoplasmic transport;3.69842371957146e-18!GO:0016604;nuclear body;5.19381150150989e-18!GO:0042981;regulation of apoptosis;5.44316390439969e-18!GO:0051169;nuclear transport;7.90838540904559e-18!GO:0043067;regulation of programmed cell death;9.95585006313906e-18!GO:0031323;regulation of cellular metabolic process;2.95949051660165e-17!GO:0007049;cell cycle;3.08584725507929e-17!GO:0005740;mitochondrial envelope;8.22362739175745e-17!GO:0043285;biopolymer catabolic process;1.03036044025132e-16!GO:0005524;ATP binding;1.10398228898016e-16!GO:0005730;nucleolus;1.63606732904281e-16!GO:0022618;protein-RNA complex assembly;1.901755678086e-16!GO:0031966;mitochondrial membrane;2.09455672330233e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;2.47494998569088e-16!GO:0032559;adenyl ribonucleotide binding;3.87405286306872e-16!GO:0006350;transcription;9.98623629107459e-16!GO:0019866;organelle inner membrane;1.38141321150591e-15!GO:0006323;DNA packaging;1.56456703379219e-15!GO:0051276;chromosome organization and biogenesis;2.11844091483781e-15!GO:0043228;non-membrane-bound organelle;3.84953284598869e-15!GO:0043232;intracellular non-membrane-bound organelle;3.84953284598869e-15!GO:0016607;nuclear speck;3.91437164831682e-15!GO:0030554;adenyl nucleotide binding;5.02176416711023e-15!GO:0010468;regulation of gene expression;5.52733510752595e-15!GO:0005635;nuclear envelope;9.60951324589674e-15!GO:0006974;response to DNA damage stimulus;1.9948027950469e-14!GO:0008135;translation factor activity, nucleic acid binding;2.29565832220979e-14!GO:0006119;oxidative phosphorylation;2.58131898694204e-14!GO:0015934;large ribosomal subunit;2.99226167438833e-14!GO:0003712;transcription cofactor activity;3.16662930216553e-14!GO:0012505;endomembrane system;4.54536900105483e-14!GO:0015935;small ribosomal subunit;4.55108436230148e-14!GO:0009057;macromolecule catabolic process;4.78732758306849e-14!GO:0030163;protein catabolic process;6.59352569930765e-14!GO:0048523;negative regulation of cellular process;6.59453976916558e-14!GO:0031965;nuclear membrane;6.76085711772201e-14!GO:0006793;phosphorus metabolic process;6.78325043393423e-14!GO:0006796;phosphate metabolic process;6.78325043393423e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.45978371522587e-14!GO:0065007;biological regulation;8.66631133624221e-14!GO:0006366;transcription from RNA polymerase II promoter;1.55200005824052e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.57354015535776e-13!GO:0005743;mitochondrial inner membrane;2.92005676188234e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.69930772484009e-13!GO:0017038;protein import;7.29875349135322e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;8.85896321453574e-13!GO:0000375;RNA splicing, via transesterification reactions;8.85896321453574e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.85896321453574e-13!GO:0032774;RNA biosynthetic process;1.34220468082334e-12!GO:0006351;transcription, DNA-dependent;1.40557583993611e-12!GO:0007243;protein kinase cascade;2.35813285810042e-12!GO:0045449;regulation of transcription;3.0207938441592e-12!GO:0005794;Golgi apparatus;3.1221267708279e-12!GO:0016568;chromatin modification;3.36538406453212e-12!GO:0048770;pigment granule;4.03290434953656e-12!GO:0042470;melanosome;4.03290434953656e-12!GO:0048519;negative regulation of biological process;4.42538763617971e-12!GO:0042623;ATPase activity, coupled;4.42538763617971e-12!GO:0004386;helicase activity;5.27012657571779e-12!GO:0051726;regulation of cell cycle;6.08663855378773e-12!GO:0044453;nuclear membrane part;6.24259350089494e-12!GO:0022402;cell cycle process;6.32834677556459e-12!GO:0044455;mitochondrial membrane part;1.17372493612651e-11!GO:0000074;regulation of progression through cell cycle;1.217903938948e-11!GO:0008639;small protein conjugating enzyme activity;1.28091924427968e-11!GO:0016310;phosphorylation;1.29866298940272e-11!GO:0016887;ATPase activity;1.47676277337953e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.66470396460805e-11!GO:0016192;vesicle-mediated transport;1.67174419886233e-11!GO:0004842;ubiquitin-protein ligase activity;1.67174419886233e-11!GO:0006281;DNA repair;1.95498501108092e-11!GO:0031324;negative regulation of cellular metabolic process;2.7466823265636e-11!GO:0006457;protein folding;3.00450693096526e-11!GO:0044248;cellular catabolic process;3.62047367042583e-11!GO:0008270;zinc ion binding;4.18429665337508e-11!GO:0019787;small conjugating protein ligase activity;4.54432930353012e-11!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.60747000249915e-11!GO:0007242;intracellular signaling cascade;5.53819482724246e-11!GO:0003743;translation initiation factor activity;6.37658146206599e-11!GO:0006606;protein import into nucleus;6.52663415347394e-11!GO:0051170;nuclear import;7.28386709589547e-11!GO:0048193;Golgi vesicle transport;1.2646558107219e-10!GO:0006355;regulation of transcription, DNA-dependent;1.54241478747247e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.54241478747247e-10!GO:0050657;nucleic acid transport;1.7847118679355e-10!GO:0051236;establishment of RNA localization;1.7847118679355e-10!GO:0050658;RNA transport;1.7847118679355e-10!GO:0006413;translational initiation;1.88326158279323e-10!GO:0008026;ATP-dependent helicase activity;2.47835290743775e-10!GO:0006403;RNA localization;2.51666382869488e-10!GO:0005643;nuclear pore;2.57857639129269e-10!GO:0005768;endosome;2.85271531816817e-10!GO:0016564;transcription repressor activity;3.5895060743011e-10!GO:0006446;regulation of translational initiation;3.90377566793171e-10!GO:0005694;chromosome;4.0193813816918e-10!GO:0051246;regulation of protein metabolic process;5.56045530444517e-10!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.28724745158144e-10!GO:0005746;mitochondrial respiratory chain;6.41627534849814e-10!GO:0006333;chromatin assembly or disassembly;6.56304401905419e-10!GO:0065004;protein-DNA complex assembly;6.9313121023728e-10!GO:0065009;regulation of a molecular function;1.09690934878629e-09!GO:0031980;mitochondrial lumen;1.19283412423959e-09!GO:0005759;mitochondrial matrix;1.19283412423959e-09!GO:0009892;negative regulation of metabolic process;1.79948679492352e-09!GO:0016481;negative regulation of transcription;1.97384812089497e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.44690823806214e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.01954769688379e-09!GO:0016881;acid-amino acid ligase activity;3.34665590296763e-09!GO:0016563;transcription activator activity;4.73014512801859e-09!GO:0050136;NADH dehydrogenase (quinone) activity;5.20403603916229e-09!GO:0003954;NADH dehydrogenase activity;5.20403603916229e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.20403603916229e-09!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.23764629704259e-09!GO:0006917;induction of apoptosis;7.37447946549315e-09!GO:0043065;positive regulation of apoptosis;7.50053408771751e-09!GO:0009719;response to endogenous stimulus;8.12710230338812e-09!GO:0003713;transcription coactivator activity;8.1605660933627e-09!GO:0051082;unfolded protein binding;8.41378008594229e-09!GO:0045786;negative regulation of progression through cell cycle;9.72109629156785e-09!GO:0051028;mRNA transport;1.00490037887896e-08!GO:0043068;positive regulation of programmed cell death;1.18807168925065e-08!GO:0003677;DNA binding;1.33072485235281e-08!GO:0012502;induction of programmed cell death;1.34823070928871e-08!GO:0044427;chromosomal part;1.46530600228373e-08!GO:0043069;negative regulation of programmed cell death;1.60907493317988e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.99556782575532e-08!GO:0043066;negative regulation of apoptosis;2.37702518193215e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.56160075206556e-08!GO:0046930;pore complex;3.05032446510551e-08!GO:0008565;protein transporter activity;3.46630118302216e-08!GO:0043566;structure-specific DNA binding;3.63531765834802e-08!GO:0016740;transferase activity;5.14803703435701e-08!GO:0065002;intracellular protein transport across a membrane;5.53447680006989e-08!GO:0042775;organelle ATP synthesis coupled electron transport;5.76378486300999e-08!GO:0042773;ATP synthesis coupled electron transport;5.76378486300999e-08!GO:0003697;single-stranded DNA binding;8.0153757422038e-08!GO:0042254;ribosome biogenesis and assembly;8.0576340598147e-08!GO:0019829;cation-transporting ATPase activity;8.51204234373421e-08!GO:0000785;chromatin;9.54583293339438e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.01534755344647e-07!GO:0019899;enzyme binding;1.02245674633781e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.25079895407868e-07!GO:0045271;respiratory chain complex I;1.25079895407868e-07!GO:0005747;mitochondrial respiratory chain complex I;1.25079895407868e-07!GO:0006916;anti-apoptosis;1.25309558700851e-07!GO:0032446;protein modification by small protein conjugation;1.47548189985715e-07!GO:0048522;positive regulation of cellular process;1.59115285308461e-07!GO:0046914;transition metal ion binding;1.82191954573196e-07!GO:0004674;protein serine/threonine kinase activity;1.90336207756349e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.2019878989137e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.49526591839195e-07!GO:0016567;protein ubiquitination;2.64646416734198e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.88359963471315e-07!GO:0016787;hydrolase activity;4.9421927828347e-07!GO:0003924;GTPase activity;7.3377325448916e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.10941466556082e-07!GO:0007264;small GTPase mediated signal transduction;1.27821865072396e-06!GO:0000151;ubiquitin ligase complex;1.33054849044475e-06!GO:0005773;vacuole;1.5555031545953e-06!GO:0005525;GTP binding;1.58063432572528e-06!GO:0006417;regulation of translation;1.63436059070917e-06!GO:0005783;endoplasmic reticulum;1.95377164029433e-06!GO:0044432;endoplasmic reticulum part;2.02519261318796e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.0589910805691e-06!GO:0003714;transcription corepressor activity;2.17737781727559e-06!GO:0044440;endosomal part;2.81771799152785e-06!GO:0010008;endosome membrane;2.81771799152785e-06!GO:0050790;regulation of catalytic activity;3.20271206631888e-06!GO:0051168;nuclear export;3.33746969691855e-06!GO:0031497;chromatin assembly;3.61174981646008e-06!GO:0006260;DNA replication;4.40997851774318e-06!GO:0000278;mitotic cell cycle;4.44399955278914e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.31736296289523e-06!GO:0006334;nucleosome assembly;5.33867836047501e-06!GO:0051186;cofactor metabolic process;5.41724624972595e-06!GO:0048518;positive regulation of biological process;5.74029996782467e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.76430463823274e-06!GO:0003724;RNA helicase activity;5.91752391235748e-06!GO:0015986;ATP synthesis coupled proton transport;6.45916550528457e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.45916550528457e-06!GO:0005793;ER-Golgi intermediate compartment;6.58545585100955e-06!GO:0045892;negative regulation of transcription, DNA-dependent;6.80069655347071e-06!GO:0008632;apoptotic program;7.07050731179874e-06!GO:0009259;ribonucleotide metabolic process;7.97322550168382e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.12390323062953e-06!GO:0042110;T cell activation;8.31985849251064e-06!GO:0060090;molecular adaptor activity;9.22484840312936e-06!GO:0000323;lytic vacuole;9.22484840312936e-06!GO:0005764;lysosome;9.22484840312936e-06!GO:0006461;protein complex assembly;9.22484840312936e-06!GO:0009056;catabolic process;9.29774970316377e-06!GO:0006401;RNA catabolic process;9.81189391440045e-06!GO:0009967;positive regulation of signal transduction;1.0411791045202e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.05388334868735e-05!GO:0009260;ribonucleotide biosynthetic process;1.16707281016592e-05!GO:0009966;regulation of signal transduction;1.22208352178543e-05!GO:0016072;rRNA metabolic process;1.26964249936923e-05!GO:0000245;spliceosome assembly;1.26964249936923e-05!GO:0044431;Golgi apparatus part;1.27207329066734e-05!GO:0031326;regulation of cellular biosynthetic process;1.37884607727449e-05!GO:0006364;rRNA processing;1.38090740747272e-05!GO:0048475;coated membrane;1.38608687871301e-05!GO:0030117;membrane coat;1.38608687871301e-05!GO:0005770;late endosome;1.45795327950422e-05!GO:0009615;response to virus;1.49571251070032e-05!GO:0030120;vesicle coat;1.54326798125386e-05!GO:0030662;coated vesicle membrane;1.54326798125386e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.54383503040739e-05!GO:0004298;threonine endopeptidase activity;1.61510207891013e-05!GO:0009060;aerobic respiration;1.82972131546584e-05!GO:0046649;lymphocyte activation;1.8787265810485e-05!GO:0016363;nuclear matrix;1.92304979969289e-05!GO:0005813;centrosome;2.45108131057757e-05!GO:0006164;purine nucleotide biosynthetic process;2.45267441480377e-05!GO:0009150;purine ribonucleotide metabolic process;2.45267441480377e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.50737377608842e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.52561361663378e-05!GO:0006399;tRNA metabolic process;2.60643554078657e-05!GO:0005761;mitochondrial ribosome;2.69106194561558e-05!GO:0000313;organellar ribosome;2.69106194561558e-05!GO:0032561;guanyl ribonucleotide binding;2.69106194561558e-05!GO:0019001;guanyl nucleotide binding;2.69106194561558e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.6988164410742e-05!GO:0006402;mRNA catabolic process;2.78727663617814e-05!GO:0007265;Ras protein signal transduction;3.1541463849149e-05!GO:0009889;regulation of biosynthetic process;3.3880905729831e-05!GO:0006163;purine nucleotide metabolic process;3.46005149424316e-05!GO:0005789;endoplasmic reticulum membrane;3.49612275154474e-05!GO:0045321;leukocyte activation;4.52059296879526e-05!GO:0016301;kinase activity;4.80385908774228e-05!GO:0006754;ATP biosynthetic process;4.83701209005927e-05!GO:0006753;nucleoside phosphate metabolic process;4.83701209005927e-05!GO:0016197;endosome transport;5.36689085636061e-05!GO:0008234;cysteine-type peptidase activity;5.46021893062431e-05!GO:0045259;proton-transporting ATP synthase complex;5.46564980566659e-05!GO:0006732;coenzyme metabolic process;5.72396717861973e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.07760721146506e-05!GO:0015399;primary active transmembrane transporter activity;6.07760721146506e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.07760721146506e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.07760721146506e-05!GO:0002376;immune system process;7.35735490269564e-05!GO:0005815;microtubule organizing center;7.49128389194323e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.90028583576672e-05!GO:0048468;cell development;8.00227244421586e-05!GO:0008186;RNA-dependent ATPase activity;8.3088262006719e-05!GO:0030695;GTPase regulator activity;8.56599154061606e-05!GO:0006613;cotranslational protein targeting to membrane;8.73473670548115e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000100663257597067!GO:0005769;early endosome;0.000105701689594327!GO:0016779;nucleotidyltransferase activity;0.000112193922301365!GO:0009199;ribonucleoside triphosphate metabolic process;0.000112625858651789!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.00011317601319448!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.00011317601319448!GO:0046034;ATP metabolic process;0.000134048505078374!GO:0001772;immunological synapse;0.000149630116375711!GO:0003729;mRNA binding;0.000150604564275022!GO:0007005;mitochondrion organization and biogenesis;0.000150842237536892!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000163176845846563!GO:0004812;aminoacyl-tRNA ligase activity;0.000163176845846563!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000163176845846563!GO:0051427;hormone receptor binding;0.000165401317453868!GO:0045333;cellular respiration;0.00019370912787863!GO:0009141;nucleoside triphosphate metabolic process;0.000197615222025165!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00020196943911925!GO:0009144;purine nucleoside triphosphate metabolic process;0.00020196943911925!GO:0043623;cellular protein complex assembly;0.000202003154379954!GO:0005070;SH3/SH2 adaptor activity;0.000202003154379954!GO:0008047;enzyme activator activity;0.000211663859374437!GO:0006352;transcription initiation;0.000234544790203195!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000235383748747759!GO:0004004;ATP-dependent RNA helicase activity;0.000255238390298669!GO:0005667;transcription factor complex;0.000258304847583769!GO:0000139;Golgi membrane;0.000296903169010688!GO:0035257;nuclear hormone receptor binding;0.000304841743264548!GO:0008654;phospholipid biosynthetic process;0.000304841743264548!GO:0022415;viral reproductive process;0.000317053779785774!GO:0022403;cell cycle phase;0.000318073885326747!GO:0043038;amino acid activation;0.000319771028551409!GO:0006418;tRNA aminoacylation for protein translation;0.000319771028551409!GO:0043039;tRNA aminoacylation;0.000319771028551409!GO:0019783;small conjugating protein-specific protease activity;0.000323432667267527!GO:0005774;vacuolar membrane;0.000327179426001307!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000329209550893522!GO:0015631;tubulin binding;0.000357417654559983!GO:0007050;cell cycle arrest;0.000360169252011487!GO:0016251;general RNA polymerase II transcription factor activity;0.000370500038532967!GO:0005083;small GTPase regulator activity;0.000377678503960952!GO:0051188;cofactor biosynthetic process;0.000388345097637285!GO:0008287;protein serine/threonine phosphatase complex;0.000412158946310487!GO:0006468;protein amino acid phosphorylation;0.000429427554557705!GO:0042101;T cell receptor complex;0.000430339668690768!GO:0030384;phosphoinositide metabolic process;0.000437725752573634!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000461036433319158!GO:0046983;protein dimerization activity;0.000473566243132731!GO:0004843;ubiquitin-specific protease activity;0.000476206325973655!GO:0015630;microtubule cytoskeleton;0.000493462867722647!GO:0005885;Arp2/3 protein complex;0.000505808845939589!GO:0043492;ATPase activity, coupled to movement of substances;0.000509244691395167!GO:0003690;double-stranded DNA binding;0.000509244691395167!GO:0006310;DNA recombination;0.000509857237011278!GO:0046822;regulation of nucleocytoplasmic transport;0.000534671114234249!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000564735145206748!GO:0006607;NLS-bearing substrate import into nucleus;0.000564968058359873!GO:0006261;DNA-dependent DNA replication;0.000567836695378567!GO:0006612;protein targeting to membrane;0.000607968788461585!GO:0031252;leading edge;0.000615433713876156!GO:0005765;lysosomal membrane;0.000645140814294032!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000654369040933171!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000746484591761282!GO:0006611;protein export from nucleus;0.000776768727490687!GO:0005798;Golgi-associated vesicle;0.000786137694150512!GO:0051223;regulation of protein transport;0.000792986985761411!GO:0001819;positive regulation of cytokine production;0.000807854971499613!GO:0006099;tricarboxylic acid cycle;0.000813240200165557!GO:0046356;acetyl-CoA catabolic process;0.000813240200165557!GO:0031902;late endosome membrane;0.000826061678989482!GO:0045941;positive regulation of transcription;0.000866891080086677!GO:0048471;perinuclear region of cytoplasm;0.000866891080086677!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000890690227140903!GO:0016311;dephosphorylation;0.00103196947220839!GO:0044437;vacuolar part;0.00105584906832303!GO:0051090;regulation of transcription factor activity;0.0010932532048079!GO:0051251;positive regulation of lymphocyte activation;0.0011059850243333!GO:0005637;nuclear inner membrane;0.00115217757173707!GO:0051336;regulation of hydrolase activity;0.00117447249856162!GO:0009055;electron carrier activity;0.00125769618002389!GO:0006650;glycerophospholipid metabolic process;0.00128030201034054!GO:0004221;ubiquitin thiolesterase activity;0.00130120154564758!GO:0009108;coenzyme biosynthetic process;0.00131514096323456!GO:0045893;positive regulation of transcription, DNA-dependent;0.00132664526324151!GO:0006891;intra-Golgi vesicle-mediated transport;0.00133917847364519!GO:0006950;response to stress;0.00138769851718446!GO:0051338;regulation of transferase activity;0.00140036557659792!GO:0032940;secretion by cell;0.00144972395528663!GO:0005741;mitochondrial outer membrane;0.00147880302116379!GO:0006084;acetyl-CoA metabolic process;0.00149398205254813!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00153118199555484!GO:0030658;transport vesicle membrane;0.00162434229488097!GO:0042802;identical protein binding;0.00165826987910963!GO:0007034;vacuolar transport;0.00173780478607175!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00176380206725029!GO:0003725;double-stranded RNA binding;0.00193651382863164!GO:0006752;group transfer coenzyme metabolic process;0.00204842185485776!GO:0043549;regulation of kinase activity;0.00208645449879546!GO:0043021;ribonucleoprotein binding;0.00210650491069618!GO:0051329;interphase of mitotic cell cycle;0.0021145231271165!GO:0019867;outer membrane;0.00215821865835856!GO:0009893;positive regulation of metabolic process;0.00219894141245932!GO:0046966;thyroid hormone receptor binding;0.0021992915399868!GO:0005096;GTPase activator activity;0.00229546170857177!GO:0033673;negative regulation of kinase activity;0.00235565945790944!GO:0006469;negative regulation of protein kinase activity;0.00235565945790944!GO:0031968;organelle outer membrane;0.00242697768541516!GO:0051789;response to protein stimulus;0.00243283747472129!GO:0006986;response to unfolded protein;0.00243283747472129!GO:0051252;regulation of RNA metabolic process;0.00244073817736367!GO:0046489;phosphoinositide biosynthetic process;0.00248350707180494!GO:0005048;signal sequence binding;0.00256328361724341!GO:0030097;hemopoiesis;0.00265563219328652!GO:0000087;M phase of mitotic cell cycle;0.0027197331872105!GO:0051325;interphase;0.00276437541870675!GO:0006414;translational elongation;0.00294988518410882!GO:0006919;caspase activation;0.00297932187990495!GO:0043488;regulation of mRNA stability;0.00316431223950234!GO:0043487;regulation of RNA stability;0.00316431223950234!GO:0051348;negative regulation of transferase activity;0.00321769125639196!GO:0031625;ubiquitin protein ligase binding;0.00321885191180931!GO:0031982;vesicle;0.00322726897703537!GO:0008139;nuclear localization sequence binding;0.00350526119326577!GO:0019843;rRNA binding;0.0035599201431112!GO:0008017;microtubule binding;0.0035599201431112!GO:0030660;Golgi-associated vesicle membrane;0.0035599201431112!GO:0007067;mitosis;0.00356772721451636!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00362602752656036!GO:0016585;chromatin remodeling complex;0.0038303542970534!GO:0045859;regulation of protein kinase activity;0.00385649495604096!GO:0006338;chromatin remodeling;0.0038574485590415!GO:0006405;RNA export from nucleus;0.00398626024893968!GO:0016584;nucleosome positioning;0.00402459656326659!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00412732635716784!GO:0016791;phosphoric monoester hydrolase activity;0.004167384903044!GO:0001775;cell activation;0.00418980524227237!GO:0045045;secretory pathway;0.00428660671623342!GO:0031072;heat shock protein binding;0.00429720984654205!GO:0051301;cell division;0.00430359020982347!GO:0008022;protein C-terminus binding;0.00446491852848474!GO:0043280;positive regulation of caspase activity;0.00449237781656549!GO:0017091;AU-rich element binding;0.00449237781656549!GO:0050779;RNA destabilization;0.00449237781656549!GO:0000289;poly(A) tail shortening;0.00449237781656549!GO:0043281;regulation of caspase activity;0.00461431050457731!GO:0009109;coenzyme catabolic process;0.00471875003779542!GO:0003746;translation elongation factor activity;0.00475629646671858!GO:0004722;protein serine/threonine phosphatase activity;0.00493803822045254!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00513230414970787!GO:0018193;peptidyl-amino acid modification;0.00514223744732191!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00527782917205639!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00527782917205639!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00527782917205639!GO:0002520;immune system development;0.00534042698535723!GO:0006383;transcription from RNA polymerase III promoter;0.00539842640829138!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00540894245919882!GO:0005057;receptor signaling protein activity;0.00541717552967874!GO:0005669;transcription factor TFIID complex;0.0054545660246854!GO:0030518;steroid hormone receptor signaling pathway;0.00567165255621256!GO:0019904;protein domain specific binding;0.00591093197205738!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00592660733486919!GO:0046474;glycerophospholipid biosynthetic process;0.00592836986256735!GO:0005684;U2-dependent spliceosome;0.00596491072257571!GO:0051092;activation of NF-kappaB transcription factor;0.00603909309991908!GO:0051052;regulation of DNA metabolic process;0.00611560014899793!GO:0003682;chromatin binding;0.00611560014899793!GO:0008637;apoptotic mitochondrial changes;0.00628745230413944!GO:0030258;lipid modification;0.00628745230413944!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00632632360637981!GO:0033157;regulation of intracellular protein transport;0.00632632360637981!GO:0042306;regulation of protein import into nucleus;0.00632632360637981!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00636078227016254!GO:0019901;protein kinase binding;0.0065012260781824!GO:0002757;immune response-activating signal transduction;0.00652542836775123!GO:0006470;protein amino acid dephosphorylation;0.00674549653828272!GO:0003899;DNA-directed RNA polymerase activity;0.00678662206396979!GO:0045603;positive regulation of endothelial cell differentiation;0.00693613637967266!GO:0051098;regulation of binding;0.00700783554158795!GO:0004672;protein kinase activity;0.00717315292861234!GO:0016605;PML body;0.00730215407800748!GO:0051187;cofactor catabolic process;0.00733538113525472!GO:0043087;regulation of GTPase activity;0.00766875602226955!GO:0042287;MHC protein binding;0.007671337456098!GO:0003702;RNA polymerase II transcription factor activity;0.00789059355425762!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00794895534145133!GO:0048500;signal recognition particle;0.00816202706458074!GO:0004721;phosphoprotein phosphatase activity;0.00823194527028468!GO:0016790;thiolester hydrolase activity;0.00839245444272742!GO:0030118;clathrin coat;0.00871783294303087!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00884132646849067!GO:0006984;ER-nuclear signaling pathway;0.00888719497855617!GO:0031410;cytoplasmic vesicle;0.00899576707030694!GO:0048487;beta-tubulin binding;0.0089967899302313!GO:0030521;androgen receptor signaling pathway;0.00911239422896266!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00928885928251116!GO:0030127;COPII vesicle coat;0.00958096507908174!GO:0012507;ER to Golgi transport vesicle membrane;0.00958096507908174!GO:0000118;histone deacetylase complex;0.00963099064085106!GO:0007041;lysosomal transport;0.00987087132817114!GO:0003684;damaged DNA binding;0.00998138246295822!GO:0046467;membrane lipid biosynthetic process;0.0099879883663282!GO:0051059;NF-kappaB binding;0.0100500324883463!GO:0000786;nucleosome;0.0100853058963153!GO:0031901;early endosome membrane;0.0102983207242352!GO:0000059;protein import into nucleus, docking;0.0103176490495412!GO:0006818;hydrogen transport;0.0103176490495412!GO:0003678;DNA helicase activity;0.010390492174537!GO:0000082;G1/S transition of mitotic cell cycle;0.0106396707787264!GO:0030217;T cell differentiation;0.0110998569229227!GO:0015992;proton transport;0.0117067933634888!GO:0019210;kinase inhibitor activity;0.0117459339696302!GO:0016788;hydrolase activity, acting on ester bonds;0.0118144001578735!GO:0019058;viral infectious cycle;0.0118399626353763!GO:0003711;transcription elongation regulator activity;0.0120658064875869!GO:0051235;maintenance of localization;0.012082743787268!GO:0031325;positive regulation of cellular metabolic process;0.0121716997279525!GO:0000209;protein polyubiquitination;0.0123748944094292!GO:0006302;double-strand break repair;0.0123819052317281!GO:0031988;membrane-bound vesicle;0.012391773435106!GO:0043433;negative regulation of transcription factor activity;0.012391773435106!GO:0033116;ER-Golgi intermediate compartment membrane;0.012391773435106!GO:0030867;rough endoplasmic reticulum membrane;0.0124527483193133!GO:0006376;mRNA splice site selection;0.0124664531420672!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0124664531420672!GO:0032200;telomere organization and biogenesis;0.0128951617792615!GO:0000723;telomere maintenance;0.0128951617792615!GO:0043407;negative regulation of MAP kinase activity;0.012935852942763!GO:0019079;viral genome replication;0.013200461665342!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.013200461665342!GO:0002764;immune response-regulating signal transduction;0.0133470439480046!GO:0004860;protein kinase inhibitor activity;0.0137021429736937!GO:0001817;regulation of cytokine production;0.0137326135052088!GO:0030968;unfolded protein response;0.0141177719577309!GO:0030134;ER to Golgi transport vesicle;0.0145842534302805!GO:0030522;intracellular receptor-mediated signaling pathway;0.0147677193026029!GO:0005657;replication fork;0.0148630315929882!GO:0008624;induction of apoptosis by extracellular signals;0.0148729733687414!GO:0050865;regulation of cell activation;0.0149141242135623!GO:0005521;lamin binding;0.0149571236251511!GO:0031098;stress-activated protein kinase signaling pathway;0.014984582766953!GO:0043621;protein self-association;0.0152324046049245!GO:0004527;exonuclease activity;0.0152661451806967!GO:0042990;regulation of transcription factor import into nucleus;0.0157199145974278!GO:0042991;transcription factor import into nucleus;0.0157199145974278!GO:0051539;4 iron, 4 sulfur cluster binding;0.0157199145974278!GO:0043414;biopolymer methylation;0.0157754911988573!GO:0040029;regulation of gene expression, epigenetic;0.0157959578173152!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0157959578173152!GO:0045047;protein targeting to ER;0.0157959578173152!GO:0045069;regulation of viral genome replication;0.0157997888553389!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.016485506124339!GO:0008312;7S RNA binding;0.0165356289480358!GO:0044452;nucleolar part;0.0165561580425508!GO:0050871;positive regulation of B cell activation;0.0168540711180276!GO:0030036;actin cytoskeleton organization and biogenesis;0.0171170344938983!GO:0006955;immune response;0.017456358113722!GO:0046854;phosphoinositide phosphorylation;0.0175174330207733!GO:0005819;spindle;0.0175361885567128!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.017566131953995!GO:0000119;mediator complex;0.0176254609555495!GO:0000279;M phase;0.0177198800314247!GO:0008276;protein methyltransferase activity;0.0178864920587892!GO:0051249;regulation of lymphocyte activation;0.0180445389875863!GO:0032318;regulation of Ras GTPase activity;0.0181320008700034!GO:0005791;rough endoplasmic reticulum;0.0182826895423693!GO:0005762;mitochondrial large ribosomal subunit;0.0183775003320959!GO:0000315;organellar large ribosomal subunit;0.0183775003320959!GO:0000049;tRNA binding;0.0184508269398783!GO:0035026;leading edge cell differentiation;0.0186122953033267!GO:0047485;protein N-terminus binding;0.0191847996251617!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0192289656802796!GO:0008601;protein phosphatase type 2A regulator activity;0.0196103566017446!GO:0015923;mannosidase activity;0.0202417026907281!GO:0045058;T cell selection;0.0202507345975089!GO:0022411;cellular component disassembly;0.0207162683140359!GO:0000781;chromosome, telomeric region;0.0212438987809575!GO:0048534;hemopoietic or lymphoid organ development;0.0212467464339178!GO:0050811;GABA receptor binding;0.0213116455526523!GO:0050870;positive regulation of T cell activation;0.0213144994636255!GO:0043022;ribosome binding;0.0215838170333058!GO:0000060;protein import into nucleus, translocation;0.0216339808699982!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0223061044923225!GO:0043681;protein import into mitochondrion;0.0224837463494778!GO:0006661;phosphatidylinositol biosynthetic process;0.0225588461426686!GO:0032386;regulation of intracellular transport;0.0227787342286989!GO:0008629;induction of apoptosis by intracellular signals;0.0231650896284975!GO:0046578;regulation of Ras protein signal transduction;0.0233079870116322!GO:0006643;membrane lipid metabolic process;0.0233357578112504!GO:0033549;MAP kinase phosphatase activity;0.023577777614715!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.023577777614715!GO:0045746;negative regulation of Notch signaling pathway;0.023577777614715!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0242260525144508!GO:0001726;ruffle;0.0243022365779782!GO:0030099;myeloid cell differentiation;0.0243022365779782!GO:0006672;ceramide metabolic process;0.0247728469437291!GO:0016023;cytoplasmic membrane-bound vesicle;0.0248627746302202!GO:0019900;kinase binding;0.0248723118312797!GO:0046426;negative regulation of JAK-STAT cascade;0.0248723118312797!GO:0032508;DNA duplex unwinding;0.0249606190410827!GO:0032392;DNA geometric change;0.0249606190410827!GO:0002521;leukocyte differentiation;0.0250498693357232!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0250919571694086!GO:0000188;inactivation of MAPK activity;0.0253004646598044!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0253004646598044!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0259163641716078!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0259163641716078!GO:0051091;positive regulation of transcription factor activity;0.0260294966441972!GO:0046834;lipid phosphorylation;0.0263197733563264!GO:0005869;dynactin complex;0.0263197733563264!GO:0045185;maintenance of protein localization;0.0265001714593081!GO:0004402;histone acetyltransferase activity;0.026852995453782!GO:0004468;lysine N-acetyltransferase activity;0.026852995453782!GO:0007006;mitochondrial membrane organization and biogenesis;0.027167091343702!GO:0002440;production of molecular mediator of immune response;0.0272056410447326!GO:0006595;polyamine metabolic process;0.0276213307819064!GO:0016044;membrane organization and biogenesis;0.027863602820727!GO:0006289;nucleotide-excision repair;0.0279239245433426!GO:0008168;methyltransferase activity;0.0286038681436234!GO:0046979;TAP2 binding;0.0286038681436234!GO:0046977;TAP binding;0.0286038681436234!GO:0046978;TAP1 binding;0.0286038681436234!GO:0016279;protein-lysine N-methyltransferase activity;0.0286220801449347!GO:0018024;histone-lysine N-methyltransferase activity;0.0286220801449347!GO:0016278;lysine N-methyltransferase activity;0.0286220801449347!GO:0000287;magnesium ion binding;0.0286947181705333!GO:0046519;sphingoid metabolic process;0.0289576350416859!GO:0007004;telomere maintenance via telomerase;0.0290003291213906!GO:0007254;JNK cascade;0.0293214656497579!GO:0031461;cullin-RING ubiquitin ligase complex;0.0293710753517826!GO:0045637;regulation of myeloid cell differentiation;0.02937384214985!GO:0016741;transferase activity, transferring one-carbon groups;0.0296230643108128!GO:0030880;RNA polymerase complex;0.030291184175833!GO:0005099;Ras GTPase activator activity;0.0313158377691968!GO:0006914;autophagy;0.0313158377691968!GO:0004518;nuclease activity;0.0315001962411423!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0316630280277376!GO:0030145;manganese ion binding;0.0318807787493742!GO:0032259;methylation;0.0319443881106953!GO:0016569;covalent chromatin modification;0.0323084973707767!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0324727146532992!GO:0006354;RNA elongation;0.0324727146532992!GO:0007259;JAK-STAT cascade;0.0324727146532992!GO:0016859;cis-trans isomerase activity;0.0325256232125625!GO:0016566;specific transcriptional repressor activity;0.0330877254279188!GO:0050851;antigen receptor-mediated signaling pathway;0.0343480499958757!GO:0000303;response to superoxide;0.0344127367260638!GO:0032507;maintenance of cellular protein localization;0.0347622586718727!GO:0000159;protein phosphatase type 2A complex;0.0349010679065065!GO:0006626;protein targeting to mitochondrion;0.0352663611279226!GO:0030137;COPI-coated vesicle;0.0354660606184085!GO:0016570;histone modification;0.0356029144687351!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0358087259729675!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0360215974802359!GO:0050863;regulation of T cell activation;0.036098759166685!GO:0030674;protein binding, bridging;0.0362919026892397!GO:0001667;ameboidal cell migration;0.0367782991221075!GO:0032027;myosin light chain binding;0.0367782991221075!GO:0051056;regulation of small GTPase mediated signal transduction;0.037067546977595!GO:0030218;erythrocyte differentiation;0.0375591751038763!GO:0050852;T cell receptor signaling pathway;0.0375591751038763!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0376456976140916!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0381221204873766!GO:0007030;Golgi organization and biogenesis;0.0384452925498768!GO:0022890;inorganic cation transmembrane transporter activity;0.0386251797223593!GO:0030433;ER-associated protein catabolic process;0.0386251797223593!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0386251797223593!GO:0033239;negative regulation of amine metabolic process;0.0391833319620335!GO:0045763;negative regulation of amino acid metabolic process;0.0391833319620335!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0391833319620335!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0397306897560913!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0397306897560913!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0397306897560913!GO:0048002;antigen processing and presentation of peptide antigen;0.0398321905695362!GO:0004197;cysteine-type endopeptidase activity;0.0402443493626944!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0412614819190608!GO:0000428;DNA-directed RNA polymerase complex;0.0412614819190608!GO:0001836;release of cytochrome c from mitochondria;0.0413930462789693!GO:0030176;integral to endoplasmic reticulum membrane;0.0414603039709149!GO:0000339;RNA cap binding;0.0416348011275079!GO:0045926;negative regulation of growth;0.0416626657950803!GO:0019220;regulation of phosphate metabolic process;0.0417792625323236!GO:0051174;regulation of phosphorus metabolic process;0.0417792625323236!GO:0045792;negative regulation of cell size;0.0417960490033363!GO:0030663;COPI coated vesicle membrane;0.0419931389417258!GO:0030126;COPI vesicle coat;0.0419931389417258!GO:0009299;mRNA transcription;0.0420459028087716!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0420896608054192!GO:0009117;nucleotide metabolic process;0.0430959518813536!GO:0030125;clathrin vesicle coat;0.0433976240473826!GO:0030665;clathrin coated vesicle membrane;0.0433976240473826!GO:0006839;mitochondrial transport;0.0443550626485072!GO:0008033;tRNA processing;0.04506933179617!GO:0005788;endoplasmic reticulum lumen;0.0452651878938055!GO:0046982;protein heterodimerization activity;0.0453583713163046!GO:0035035;histone acetyltransferase binding;0.046176468708046!GO:0008536;Ran GTPase binding;0.0466455733479642!GO:0051087;chaperone binding;0.0467059633771125!GO:0019883;antigen processing and presentation of endogenous antigen;0.0474731275463052!GO:0031647;regulation of protein stability;0.0474877452102421!GO:0008097;5S rRNA binding;0.0474877452102421!GO:0042608;T cell receptor binding;0.0482083811837243!GO:0051051;negative regulation of transport;0.0487647104505779!GO:0006926;virus-infected cell apoptosis;0.0493629990209338
|sample_id=11387
|sample_id=11387
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=PAX3,7:3.92480849766;RORA:3.73620423722;CREB1:3.68674465084;ATF4:3.63012502111;ATF5_CREB3:3.44412721674;RFX2..5_RFXANK_RFXAP:3.44029153181;RUNX1..3:3.43134499472;NFKB1_REL_RELA:3.12909292256;FOX{D1,D2}:3.05498544283;BPTF:2.98591698289;PAX2:2.74528227082;FOXO1,3,4:2.74501368098;PITX1..3:2.72120159627;T:2.71767618255;FOXP1:2.58713334956;ELF1,2,4:2.57384628841;ETS1,2:2.52063711526;RFX1:2.44107169574;FOXN1:2.40690427759;DMAP1_NCOR{1,2}_SMARC:2.38468603333;ZBTB16:2.13484100227;FOX{F1,F2,J1}:2.10619523971;SPI1:2.06438895822;JUN:2.0554202911;TOPORS:1.97796580652;NKX2-1,4:1.95532649486;HMX1:1.95189728709;TGIF1:1.89082753814;TBX4,5:1.70250588751;IRF1,2:1.52938073082;ATF2:1.52463012005;SPIB:1.49430755133;HIF1A:1.43663195025;NKX6-1,2:1.40769414308;IKZF2:1.33153359243;ATF6:1.33067541288;TLX2:1.20564941322;ZNF384:1.19336299375;BREu{core}:1.10065316064;FOS_FOS{B,L1}_JUN{B,D}:0.983151606592;FOSL2:0.905133608831;NANOG{mouse}:0.781848940111;EP300:0.767804095243;SREBF1,2:0.736269348331;MAFB:0.729746173847;NFATC1..3:0.682424079553;BACH2:0.679165109207;EGR1..3:0.667408452412;LEF1_TCF7_TCF7L1,2:0.654244549567;HMGA1,2:0.634055894021;NFIL3:0.625452805661;PAX4:0.556246146659;PAX6:0.543744976305;FOXL1:0.535916661894;IRF7:0.530712341122;SOX2:0.48014415846;ELK1,4_GABP{A,B1}:0.478598204674;NFE2:0.472038133611;TFDP1:0.453954143316;HBP1_HMGB_SSRP1_UBTF:0.453666655493;FOX{I1,J2}:0.435228203696;FOXP3:0.432626957951;RREB1:0.359189040709;MYB:0.333809826416;AIRE:0.279035260919;CDX1,2,4:0.261993492421;PPARG:0.26034512684;FOXD3:0.223294580474;SMAD1..7,9:0.213097413236;NFE2L1:0.18946495382;RXRA_VDR{dimer}:0.184735543017;CEBPA,B_DDIT3:0.162450726986;STAT2,4,6:0.120654024656;PDX1:0.0772346801502;NKX3-1:0.0664982221682;GATA6:0.0289088812657;AHR_ARNT_ARNT2:-0.0120545226916;NFY{A,B,C}:-0.0258419509301;NFE2L2:-0.0681142430653;MYFfamily:-0.137199516987;HLF:-0.159529597683;RBPJ:-0.200602240108;GCM1,2:-0.218355503542;POU2F1..3:-0.232171271951;SOX5:-0.24523193276;ZFP161:-0.267535098022;NR5A1,2:-0.278513958142;MTE{core}:-0.285403098934;HOX{A6,A7,B6,B7}:-0.291883676843;FOXQ1:-0.299972236965;CUX2:-0.327915709262;E2F1..5:-0.400414353566;ZEB1:-0.420383909147;PATZ1:-0.439290727055;SRF:-0.441392545521;TFAP4:-0.469489594471;TFAP2B:-0.469937069326;MED-1{core}:-0.493229563993;NRF1:-0.500997638832;DBP:-0.525706976257;PBX1:-0.530572951725;CRX:-0.536391767306;GLI1..3:-0.552040100678;SNAI1..3:-0.57615677679;NFIX:-0.614070308138;TAL1_TCF{3,4,12}:-0.628804859141;SPZ1:-0.629089041132;ALX4:-0.629400099529;EVI1:-0.650517596087;STAT1,3:-0.657599486531;HSF1,2:-0.660563545074;MTF1:-0.673693397071;HES1:-0.718998924499;GATA4:-0.731623819227;TFAP2{A,C}:-0.747445400382;HNF4A_NR2F1,2:-0.75108296308;MYOD1:-0.753025991391;PRRX1,2:-0.754240897065;SP1:-0.755986683022;bHLH_family:-0.759203044154;PAX5:-0.76144782323;SOX{8,9,10}:-0.764981160838;REST:-0.799957375451;NR1H4:-0.807886323915;AR:-0.81262956688;MAZ:-0.839635965756;FOXM1:-0.859759850214;XBP1:-0.863368998753;NHLH1,2:-0.863633170719;HOXA9_MEIS1:-0.86837378506;MZF1:-0.897404438168;NANOG:-0.90484884546;STAT5{A,B}:-0.927294783197;HNF1A:-0.968206371602;LMO2:-0.975936915545;TFCP2:-0.984058285625;MEF2{A,B,C,D}:-0.991978473541;OCT4_SOX2{dimer}:-1.07058860464;ZBTB6:-1.07110933561;FOXA2:-1.12264287471;RXR{A,B,G}:-1.13351958682;HIC1:-1.1689183495;ZNF148:-1.17656983839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21194681187;ZNF423:-1.22844595361;YY1:-1.24261706425;NKX2-2,8:-1.24517739811;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27592821182;GFI1:-1.27726376992;ESRRA:-1.30511482754;TBP:-1.3226187504;XCPE1{core}:-1.32822936312;PAX8:-1.36683687291;TEF:-1.3814368194;ZNF143:-1.39027863908;LHX3,4:-1.39068265841;ZIC1..3:-1.39409330054;HOX{A5,B5}:-1.47777336293;MYBL2:-1.50513773126;POU1F1:-1.5751053838;UFEwm:-1.59439041146;POU5F1:-1.61780822371;TP53:-1.66604228805;SOX17:-1.71782285438;GTF2I:-1.77799094264;GTF2A1,2:-1.80919707849;EN1,2:-1.83127851788;ZNF238:-1.84384728114;POU6F1:-1.95510460988;TEAD1:-1.9784583252;TLX1..3_NFIC{dimer}:-2.02775002797;ALX1:-2.04307080094;GZF1:-2.04525542833;PRDM1:-2.06644064359;NKX2-3_NKX2-5:-2.07608325412;CDC5L:-2.09379686633;HAND1,2:-2.09986465821;ONECUT1,2:-2.13379626881;NR6A1:-2.16005508702;GFI1B:-2.16131707284;ESR1:-2.16515454006;ARID5B:-2.18761884913;VSX1,2:-2.19238122958;IKZF1:-2.24033576453;EBF1:-2.31124151104;POU3F1..4:-2.3121966674;HOX{A4,D4}:-2.32105220445;KLF4:-2.50480617668;NKX3-2:-2.89118297256;ADNP_IRX_SIX_ZHX:-2.94545569043;PAX1,9:-2.97362319685;NR3C1:-3.6136818736
|top_motifs=PAX3,7:3.92480849766;RORA:3.73620423722;CREB1:3.68674465084;ATF4:3.63012502111;ATF5_CREB3:3.44412721674;RFX2..5_RFXANK_RFXAP:3.44029153181;RUNX1..3:3.43134499472;NFKB1_REL_RELA:3.12909292256;FOX{D1,D2}:3.05498544283;BPTF:2.98591698289;PAX2:2.74528227082;FOXO1,3,4:2.74501368098;PITX1..3:2.72120159627;T:2.71767618255;FOXP1:2.58713334956;ELF1,2,4:2.57384628841;ETS1,2:2.52063711526;RFX1:2.44107169574;FOXN1:2.40690427759;DMAP1_NCOR{1,2}_SMARC:2.38468603333;ZBTB16:2.13484100227;FOX{F1,F2,J1}:2.10619523971;SPI1:2.06438895822;JUN:2.0554202911;TOPORS:1.97796580652;NKX2-1,4:1.95532649486;HMX1:1.95189728709;TGIF1:1.89082753814;TBX4,5:1.70250588751;IRF1,2:1.52938073082;ATF2:1.52463012005;SPIB:1.49430755133;HIF1A:1.43663195025;NKX6-1,2:1.40769414308;IKZF2:1.33153359243;ATF6:1.33067541288;TLX2:1.20564941322;ZNF384:1.19336299375;BREu{core}:1.10065316064;FOS_FOS{B,L1}_JUN{B,D}:0.983151606592;FOSL2:0.905133608831;NANOG{mouse}:0.781848940111;EP300:0.767804095243;SREBF1,2:0.736269348331;MAFB:0.729746173847;NFATC1..3:0.682424079553;BACH2:0.679165109207;EGR1..3:0.667408452412;LEF1_TCF7_TCF7L1,2:0.654244549567;HMGA1,2:0.634055894021;NFIL3:0.625452805661;PAX4:0.556246146659;PAX6:0.543744976305;FOXL1:0.535916661894;IRF7:0.530712341122;SOX2:0.48014415846;ELK1,4_GABP{A,B1}:0.478598204674;NFE2:0.472038133611;TFDP1:0.453954143316;HBP1_HMGB_SSRP1_UBTF:0.453666655493;FOX{I1,J2}:0.435228203696;FOXP3:0.432626957951;RREB1:0.359189040709;MYB:0.333809826416;AIRE:0.279035260919;CDX1,2,4:0.261993492421;PPARG:0.26034512684;FOXD3:0.223294580474;SMAD1..7,9:0.213097413236;NFE2L1:0.18946495382;RXRA_VDR{dimer}:0.184735543017;CEBPA,B_DDIT3:0.162450726986;STAT2,4,6:0.120654024656;PDX1:0.0772346801502;NKX3-1:0.0664982221682;GATA6:0.0289088812657;AHR_ARNT_ARNT2:-0.0120545226916;NFY{A,B,C}:-0.0258419509301;NFE2L2:-0.0681142430653;MYFfamily:-0.137199516987;HLF:-0.159529597683;RBPJ:-0.200602240108;GCM1,2:-0.218355503542;POU2F1..3:-0.232171271951;SOX5:-0.24523193276;ZFP161:-0.267535098022;NR5A1,2:-0.278513958142;MTE{core}:-0.285403098934;HOX{A6,A7,B6,B7}:-0.291883676843;FOXQ1:-0.299972236965;CUX2:-0.327915709262;E2F1..5:-0.400414353566;ZEB1:-0.420383909147;PATZ1:-0.439290727055;SRF:-0.441392545521;TFAP4:-0.469489594471;TFAP2B:-0.469937069326;MED-1{core}:-0.493229563993;NRF1:-0.500997638832;DBP:-0.525706976257;PBX1:-0.530572951725;CRX:-0.536391767306;GLI1..3:-0.552040100678;SNAI1..3:-0.57615677679;NFIX:-0.614070308138;TAL1_TCF{3,4,12}:-0.628804859141;SPZ1:-0.629089041132;ALX4:-0.629400099529;EVI1:-0.650517596087;STAT1,3:-0.657599486531;HSF1,2:-0.660563545074;MTF1:-0.673693397071;HES1:-0.718998924499;GATA4:-0.731623819227;TFAP2{A,C}:-0.747445400382;HNF4A_NR2F1,2:-0.75108296308;MYOD1:-0.753025991391;PRRX1,2:-0.754240897065;SP1:-0.755986683022;bHLH_family:-0.759203044154;PAX5:-0.76144782323;SOX{8,9,10}:-0.764981160838;REST:-0.799957375451;NR1H4:-0.807886323915;AR:-0.81262956688;MAZ:-0.839635965756;FOXM1:-0.859759850214;XBP1:-0.863368998753;NHLH1,2:-0.863633170719;HOXA9_MEIS1:-0.86837378506;MZF1:-0.897404438168;NANOG:-0.90484884546;STAT5{A,B}:-0.927294783197;HNF1A:-0.968206371602;LMO2:-0.975936915545;TFCP2:-0.984058285625;MEF2{A,B,C,D}:-0.991978473541;OCT4_SOX2{dimer}:-1.07058860464;ZBTB6:-1.07110933561;FOXA2:-1.12264287471;RXR{A,B,G}:-1.13351958682;HIC1:-1.1689183495;ZNF148:-1.17656983839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21194681187;ZNF423:-1.22844595361;YY1:-1.24261706425;NKX2-2,8:-1.24517739811;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27592821182;GFI1:-1.27726376992;ESRRA:-1.30511482754;TBP:-1.3226187504;XCPE1{core}:-1.32822936312;PAX8:-1.36683687291;TEF:-1.3814368194;ZNF143:-1.39027863908;LHX3,4:-1.39068265841;ZIC1..3:-1.39409330054;HOX{A5,B5}:-1.47777336293;MYBL2:-1.50513773126;POU1F1:-1.5751053838;UFEwm:-1.59439041146;POU5F1:-1.61780822371;TP53:-1.66604228805;SOX17:-1.71782285438;GTF2I:-1.77799094264;GTF2A1,2:-1.80919707849;EN1,2:-1.83127851788;ZNF238:-1.84384728114;POU6F1:-1.95510460988;TEAD1:-1.9784583252;TLX1..3_NFIC{dimer}:-2.02775002797;ALX1:-2.04307080094;GZF1:-2.04525542833;PRDM1:-2.06644064359;NKX2-3_NKX2-5:-2.07608325412;CDC5L:-2.09379686633;HAND1,2:-2.09986465821;ONECUT1,2:-2.13379626881;NR6A1:-2.16005508702;GFI1B:-2.16131707284;ESR1:-2.16515454006;ARID5B:-2.18761884913;VSX1,2:-2.19238122958;IKZF1:-2.24033576453;EBF1:-2.31124151104;POU3F1..4:-2.3121966674;HOX{A4,D4}:-2.32105220445;KLF4:-2.50480617668;NKX3-2:-2.89118297256;ADNP_IRX_SIX_ZHX:-2.94545569043;PAX1,9:-2.97362319685;NR3C1:-3.6136818736
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11387-118C1;search_select_hide=table117:FF:11387-118C1
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:Natural Killer Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12001
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage53 years old adult
sexmale
age53
cell typenatural killer cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNK727
catalog number3H100-50-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005757
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12001 CAGE DRX008372 DRR009244
Accession ID Hg19

Library idBAMCTSS
CNhs12001 DRZ000669 DRZ002054
Accession ID Hg38

Library idBAMCTSS
CNhs12001 DRZ012019 DRZ013404
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005757
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.CAGATC sRNA-Seq DRX037169 DRR041535
Accession ID Hg19

Library idBAMCTSS
SRhi10011.CAGATC DRZ007177


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.0524
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.18
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0218
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0524
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
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C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.662
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12001

Jaspar motifP-value
MA0002.21.16239e-5
MA0003.10.342
MA0004.10.934
MA0006.10.201
MA0007.10.346
MA0009.10.00542
MA0014.10.76
MA0017.10.0927
MA0018.29.51571e-11
MA0019.10.631
MA0024.10.737
MA0025.10.0103
MA0027.10.846
MA0028.10.0194
MA0029.10.645
MA0030.10.00814
MA0031.11.26072e-4
MA0035.20.933
MA0038.10.0996
MA0039.20.353
MA0040.10.805
MA0041.10.278
MA0042.10.662
MA0043.14.27657e-8
MA0046.10.023
MA0047.20.729
MA0048.10.595
MA0050.11.83483e-7
MA0051.10.00574
MA0052.10.232
MA0055.10.978
MA0057.10.133
MA0058.10.984
MA0059.10.425
MA0060.10.143
MA0061.11.34923e-19
MA0062.29.44241e-12
MA0065.20.593
MA0066.10.781
MA0067.11.12833e-4
MA0068.10.791
MA0069.10.95
MA0070.10.348
MA0071.10.783
MA0072.10.0747
MA0073.10.551
MA0074.10.955
MA0076.10.0107
MA0077.10.19
MA0078.10.895
MA0079.20.964
MA0080.24.27132e-12
MA0081.10.0015
MA0083.10.398
MA0084.10.251
MA0087.10.627
MA0088.10.144
MA0090.12.49047e-4
MA0091.10.23
MA0092.10.592
MA0093.10.864
MA0099.23.92567e-4
MA0100.10.925
MA0101.13.15117e-15
MA0102.20.0165
MA0103.10.262
MA0104.20.956
MA0105.14.73539e-11
MA0106.10.0436
MA0107.16.76472e-15
MA0108.20.00505
MA0111.10.495
MA0112.20.081
MA0113.10.196
MA0114.10.123
MA0115.10.0392
MA0116.10.313
MA0117.10.00703
MA0119.10.247
MA0122.10.639
MA0124.10.117
MA0125.10.064
MA0131.10.0403
MA0135.10.296
MA0136.17.98824e-19
MA0137.20.388
MA0138.20.0139
MA0139.10.683
MA0140.10.668
MA0141.10.174
MA0142.10.172
MA0143.10.122
MA0144.10.639
MA0145.10.0272
MA0146.10.646
MA0147.10.966
MA0148.10.986
MA0149.10.872
MA0150.10.00645
MA0152.10.0107
MA0153.10.0184
MA0154.10.844
MA0155.10.157
MA0156.17.69489e-14
MA0157.10.0072
MA0159.10.889
MA0160.10.92
MA0162.10.191
MA0163.10.0602
MA0164.10.52
MA0258.10.67
MA0259.10.885



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12001

Novel motifP-value
10.818
100.0135
1000.722
1010.367
1020.847
1030.419
1040.659
1050.605
1060.214
1070.0441
1080.431
1090.984
110.945
1100.508
1110.564
1120.848
1130.159
1140.907
1150.268
1160.195
1170.0103
1180.356
1190.458
120.452
1200.2
1210.331
1220.873
1233.48323e-5
1240.567
1250.86
1260.794
1270.667
1280.895
1290.254
130.372
1300.207
1310.293
1320.155
1330.569
1340.694
1350.192
1360.698
1370.0302
1380.772
1390.22
140.447
1400.868
1410.683
1420.526
1430.0325
1440.956
1450.569
1460.405
1470.0253
1480.554
1490.115
150.445
1500.981
1510.476
1520.983
1530.666
1540.124
1550.139
1560.928
1570.883
1580.0174
1590.632
160.196
1600.0348
1610.723
1620.0179
1630.897
1640.12
1650.839
1660.385
1670.164
1680.807
1690.24
170.686
180.618
190.0405
20.0747
200.0961
210.818
220.258
230.879
240.589
250.204
260.946
270.316
280.384
290.153
30.768
300.0582
310.586
320.00476
330.503
340.449
350.56
360.0991
370.557
380.69
390.516
40.976
400.751
410.0788
420.606
430.549
440.449
450.107
460.821
470.989
480.884
490.3
50.611
500.523
510.961
520.909
530.257
540.966
550.358
560.769
570.723
580.233
590.172
60.882
600.56
610.435
620.411
630.676
640.937
650.584
660.285
670.528
680.878
690.681
70.688
700.276
710.31
720.445
730.463
740.694
750.0953
760.0548
770.00278
780.948
790.628
80.221
800.0724
810.885
820.902
830.925
840.0775
850.642
860.0667
870.852
880.775
890.0023
90.774
900.843
910.879
920.599
930.765
940.283
950.172
960.836
970.463
980.578
993.40255e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12001


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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