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{{f5samples
{{f5samples
|id=FF:11410-118E6
|DRA_sample_Accession=CAGE@SAMD00005966
|name=Chondrocyte - de diff, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005966
|sample_id=11410
|accession_numbers=CAGE;DRX008203;DRR009075;DRZ000500;DRZ001885;DRZ011850;DRZ013235
|rna_tube_id=118E6
|accession_numbers_RNASeq=sRNA-Seq;DRX037197;DRR041563;DRZ007205
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=E6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2230
|rna_catalog_number=CA402-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=56 years old adult
|sample_tissue=cartilage
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=56
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=chondroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12020,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000058,CL:0000063,CL:0000134,CL:0000138,CL:0000144,CL:0000151,CL:0000153,CL:0000219,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000667,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000037,FF:0000246
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr5:134369879..134369898,-!p2@PITX1!1.99!96.90!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.74!82.13!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.72!137.60!TWIST1;;chr9:96717629..96717644,-!p1@BARX1!1.69!48.38!BARX1;;chr9:132427883..132427951,+!p2@PRRX2!1.68!46.64!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.67!51.42!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.59!49.54!PRRX2;;chr14:61116183..61116208,-!p1@SIX1!1.58!135.43!SIX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.68!HOXC5;;chr2:85981107..85981120,+!p3@ATOH8!1.46!27.67!ATOH8;;chr2:45236540..45236577,-!p1@SIX2!1.46!27.52!SIX2;;chr17:48072574..48072597,-!p1@DLX3!1.43!25.78!DLX3;;chr6:1610293..1610310,+!p1@FOXC1!1.39!38.53!FOXC1;;chr12:52445218..52445237,+!p1@NR4A1!1.38!279.99!NR4A1;;chr19:13134772..13134822,+!p2@NFIX!1.36!32.01!NFIX;;chr6:1312325..1312340,+!p1@FOXQ1!1.30!30.71!FOXQ1;;chr3:21792682..21792720,-!p1@ZNF385D!1.30!18.83!ZNF385D;;chr17:59477233..59477263,+!p1@TBX2!1.29!56.92!TBX2;;chr6:19837592..19837621,+!p1@ID4!1.26!102.99!ID4;;chr5:158526917..158526932,-!p1@EBF1!1.24!40.12!EBF1;;chr14:24837368..24837401,+!p1@NFATC4!1.24!38.09!NFATC4;;chr2:85981073..85981091,+!p5@ATOH8!1.23!15.93!ATOH8;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!74.74!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.18!19.26!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.14!12.89!HOXC10;;chr10:63853436..63853442,+!p4@ARID5B!1.11!63.59!ARID5B;;chr7:19157043..19157088,-!p2@TWIST1!1.11!29.84!TWIST1;;chr2:85981222..85981259,+!p2@ATOH8!1.10!19.12!ATOH8;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.73!HOXA9;;chr17:59529743..59529798,+!p1@TBX4!1.09!11.44!TBX4;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.30!HOXA10;;chr12:53614115..53614154,-!p1@RARG!1.08!59.24!RARG;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.15!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!1.08!11.01!HOXA11;;chr3:21792585..21792625,-!p2@ZNF385D!1.07!12.02!ZNF385D;;chr7:27224795..27224840,-!p2@HOXA11!1.06!10.43!HOXA11;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.40!TBX18;;chr17:59477275..59477286,+!p3@TBX2!1.05!13.76!TBX2;;chr18:22932080..22932170,-!p1@ZNF521!1.04!43.16!ZNF521;;chr12:54380404..54380433,+!p3@HOXC10!1.04!9.99!HOXC10;;chr1:170632959..170632987,+!p4@PRRX1!1.03!10.57!PRRX1;;chr10:63809013..63809041,+!p3@ARID5B!1.02!53.74!ARID5B;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.86!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!1.02!9.56!KLF17;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.42!HOXC9;;chr7:27205106..27205134,-!p2@HOXA9!1.02!9.42!HOXA9;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.27!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.01!9.13!HOXC5;;chr1:119530706..119530736,-!p3@TBX15!1.01!9.13!TBX15;;chr15:66994663..66994680,+!p1@SMAD6!0.99!21.15!SMAD6;;chr6:1612248..1612281,+!p2@FOXC1!0.99!9.56!FOXC1;;chr9:96717678..96717689,-!p2@BARX1!0.98!8.55!BARX1;;chr1:23885981..23886002,-!p1@ID3!0.96!1448.03!ID3;;chr10:63809106..63809127,+!p1@ARID5B!0.94!107.77!ARID5B;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.98!SIX1;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.68!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.93!84.30!AHR;;chr2:19558373..19558392,-!p1@OSR1!0.93!21.29!OSR1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.24!PRRX1;;chr10:63809077..63809089,+!p5@ARID5B!0.91!16.08!ARID5B;;chr16:79634624..79634642,-!p1@MAF!0.90!28.53!MAF;;chr7:28448965..28448994,+!p2@CREB5!0.90!25.35!CREB5;;chr8:67525443..67525459,-!p2@MYBL1!0.90!10.57!MYBL1;;chr1:170632137..170632172,+!p10@PRRX1!0.90!6.95!PRRX1;;chr15:66994561..66994597,+!p2@SMAD6!0.89!16.80!SMAD6;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.30!ATOH8;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.66!PRRX1;;chr3:21792790..21792824,-!p4@ZNF385D!0.88!6.52!ZNF385D;;chr7:96654133..96654150,-!p1@DLX5!0.88!6.52!DLX5;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.39!BNC1;;chr15:67458491..67458505,+!p18@SMAD3!0.87!6.37!SMAD3;;chr6:144329384..144329405,-!p1@PLAGL1!0.86!77.35!PLAGL1;;chr2:157189180..157189290,-!p1@NR4A2!0.86!34.62!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!0.86!14.48!NR4A3;;chr16:79633894..79633954,-!p3@MAF!0.86!12.46!MAF;;chr18:22932004..22932021,-!p2@ZNF521!0.86!6.23!ZNF521;;chr3:21792631..21792665,-!p3@ZNF385D!0.86!6.23!ZNF385D;;chr20:30193083..30193098,+!p1@ID1!0.85!527.82!ID1;;chr6:1389789..1389821,+!p1@FOXF2!0.85!8.55!FOXF2;;chr7:15726296..15726315,-!p1@MEOX2!0.85!6.08!MEOX2;;chr2:45236579..45236596,-!p2@SIX2!0.85!6.08!SIX2;;chr2:85980919..85980942,+!p4@ATOH8!0.84!6.37!ATOH8;;chr6:1612300..1612324,+!p3@FOXC1!0.84!5.94!FOXC1;;chr6:144289132..144289134,-!p3@PLAGL1!0.82!13.76!PLAGL1;;chr8:99956662..99956684,+!p1@OSR2!0.82!8.84!OSR2;;chr1:47903709..47903764,+!p1@BC169308!0.82!6.37!FOXD2;;chr2:85981027..85981047,+!p8@ATOH8!0.82!5.65!ATOH8;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.80!SNAI2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.81!9.56!MEIS3P1;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.50!KDM5D;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.42!CREB3L1;;chr15:66994615..66994630,+!p3@SMAD6!0.79!7.68!SMAD6;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.21!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.78!546.07!EPAS1;;chr20:48599506..48599526,+!p1@SNAI1!0.78!34.91!SNAI1;;chr16:79634595..79634620,-!p2@MAF!0.78!9.70!MAF;;chr11:65687362..65687436,+!p3@DRAP1!0.77!24.48!DRAP1;;chr13:37494365..37494381,-!p1@SMAD9!0.77!8.98!SMAD9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.77!5.21!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.77!4.92!DLX5;;chr7:17338239..17338262,+!p2@AHR!0.76!39.11!AHR;;chr12:53625966..53626012,-!p2@RARG!0.76!13.47!RARG;;chr15:66994718..66994729,+!p4@SMAD6!0.76!4.78!SMAD6;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.40!TBX2;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr19:13106214..13106382,+!p1@NFIX!0.74!115.73!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.74!FOXD1;;chr2:46602901..46602926,+!p7@EPAS1!0.74!6.23!EPAS1;;chr6:45296048..45296082,+!p1@RUNX2!0.74!5.21!RUNX2;;chr12:52448420..52448460,+!p5@NR4A1!0.74!4.49!NR4A1;;chr18:77155922..77155939,+!p1@NFATC1!0.73!13.04!NFATC1;;chr7:17369649..17369664,+!p4@AHR!0.73!5.50!AHR;;chr3:42695180..42695201,+!p2@ZBTB47!0.73!4.35!ZBTB47;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.06!TWIST2;;chr8:116681409..116681431,-!p2@TRPS1!0.72!12.60!TRPS1;;chr6:1612219..1612239,+!p8@FOXC1!0.72!4.20!FOXC1;;chr7:15725757..15725828,-!p5@MEOX2!0.72!4.20!MEOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.20!PKNOX2;;chr12:24102576..24102623,-!p2@SOX5!0.72!4.20!SOX5;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.04!HIF1A;;chr3:157823517..157823562,-!p1@SHOX2!0.71!4.49!SHOX2;;chr14:75894714..75894733,+!p1@JDP2!0.70!130.51!JDP2;;chr15:66994885..66994904,+!p7@SMAD6!0.70!4.06!SMAD6;;chr21:40032884..40032915,-!p2@ERG!0.70!4.06!ERG;;chr2:46612891..46612907,+!p10@EPAS1!0.70!4.06!EPAS1;;chr2:85981008..85981025,+!p7@ATOH8!0.70!4.06!ATOH8;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.27!SNAI2;;chr5:72744445..72744466,-!p2@FOXD1!0.69!6.95!FOXD1;;chr10:63851319..63851332,+!p11@ARID5B!0.69!4.35!ARID5B;;chr12:54379029..54379057,+!p2@HOXC10!0.69!3.91!HOXC10;;chr2:8822176..8822196,+!p1@ID2!0.68!620.38!ID2;;chr8:48650715..48650735,-!p1@CEBPD!0.68!562.29!CEBPD;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.77!DRAP1;;chr7:17338324..17338341,+!p3@AHR!0.68!14.19!AHR;;chr2:46602879..46602899,+!p8@EPAS1!0.68!4.78!EPAS1;;chr7:27196217..27196246,-!p2@HOXA7!0.68!3.77!HOXA7;;chr5:43067636..43067674,+!p6@ZNF131!0.67!5.21!ZNF131;;chr2:191878874..191878938,-!p1@STAT1!0.66!225.82!STAT1;;chr1:8938709..8938720,-!p3@ENO1!0.66!202.93!ENO1;;chr10:63809134..63809145,+!p6@ARID5B!0.66!9.13!ARID5B;;chr19:13136241..13136258,+!p7@NFIX!0.66!5.07!NFIX;;chr2:85980868..85980880,+!p12@ATOH8!0.66!3.62!ATOH8;;chr5:158527104..158527135,-!p4@EBF1!0.66!3.62!EBF1;;chr6:1389989..1390019,+!p2@FOXF2!0.66!3.62!FOXF2;;chr9:4300050..4300118,-!p1@GLIS3!0.65!26.22!GLIS3;;chr9:102584159..102584174,+!p2@NR4A3!0.65!6.81!NR4A3;;chr2:192015701..192015743,-!p1@STAT4!0.65!5.07!STAT4;;chr7:113726357..113726443,+!p1@FOXP2!0.64!6.37!FOXP2;;chr2:239756739..239756755,+!p2@TWIST2!0.64!6.23!TWIST2;;chr19:45260775..45260838,+!p5@BCL3!0.64!4.64!BCL3;;chr1:119530636..119530653,-!p2@TBX15!0.64!3.33!TBX15;;chr2:85981271..85981289,+!p9@ATOH8!0.64!3.33!ATOH8;;chr2:85981969..85982019,+!p6@ATOH8!0.64!3.33!ATOH8;;chr12:52448515..52448538,+!p9@NR4A1!0.64!3.33!NR4A1;;chr19:13135582..13135600,+!p3@NFIX!0.64!3.33!NFIX;;chr7:44143925..44143970,+!p1@AEBP1!0.63!87.34!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.63!8.98!FOXC2;;chr5:158526459..158526481,-!p2@EBF1!0.63!4.64!EBF1;;chr7:150974206..150974255,-!p1@SMARCD3!0.62!23.32!SMARCD3;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.19!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.19!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.62!3.19!EBF3;;chr13:37494275..37494304,-!p2@SMAD9!0.62!3.19!SMAD9;;chr5:321810..321877,+!p1@AHRR!0.61!11.30!AHRR;;chr7:15726243..15726293,-!p2@MEOX2!0.61!3.04!MEOX2;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.04!HOXC9;;chr13:37494306..37494324,-!p4@SMAD9!0.61!3.04!SMAD9;;chr1:119530493..119530572,-!p1@TBX15!0.61!3.04!TBX15;;chr1:119530857..119530884,-!p4@TBX15!0.61!3.04!TBX15;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.33!HIF1A;;chr1:8934931..8934947,-!p4@ENO1!0.60!11.44!ENO1;;chr9:73029219..73029289,-!p2@KLF9!0.60!10.43!KLF9;;chr12:80085061..80085119,-!p6@PAWR!0.60!5.21!PAWR;;chr10:63809090..63809097,+!p7@ARID5B!0.60!4.49!ARID5B;;chr11:65687222..65687240,+!p7@DRAP1!0.60!4.06!DRAP1;;chr16:54320617..54320643,-!p3@IRX3!0.60!4.06!IRX3;;chr10:77161504..77161530,-!p1@ZNF503!0.59!47.51!ZNF503;;chr1:170632683..170632696,+!p12@PRRX1!0.59!2.90!PRRX1;;chr7:1577076..1577095,+!p5@MAFK!0.59!2.90!MAFK;;chr5:139487608..139487663,+!p3@PURA!0.58!6.81!PURA;;chr15:42749722..42749739,-!p2@ZFP106!0.58!5.65!ZFP106;;chr9:102584241..102584261,+!p4@NR4A3!0.58!4.78!NR4A3;;chr7:1577111..1577132,+!p4@MAFK!0.58!3.19!MAFK;;chr7:28220198..28220269,-!p2@JAZF1!0.57!29.98!JAZF1;;chr11:65686732..65686756,+!p2@DRAP1!0.57!13.76!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.57!12.75!FOSL1;;chr7:42276787..422768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TOX!0.27!2.90!TOX;;chr20:45142154..45142227,-!p1@ZNF334!0.27!2.61!ZNF334;;chr17:79885537..79885554,-!p2@MAFG!0.27!2.46!MAFG;;chr17:7382834..7382855,-!p6@ZBTB4!0.27!2.03!ZBTB4;;chr19:56904947..56904975,-!p2@ZNF582!0.27!2.03!ZNF582;;chr1:8926441..8926473,-!p10@ENO1!0.27!1.74!ENO1;;chr6:21597283..21597312,+!p7@SOX4!0.27!1.45!SOX4;;chr9:110251836..110251887,-!p4@KLF4!0.27!1.45!KLF4;;chrX:76938351..76938379,-!p7@ATRX!0.27!1.30!ATRX;;chr19:37998036..37998098,+!p2@ZNF793!0.27!1.30!ZNF793;;chr19:45254508..45254528,+!p12@BCL3!0.27!1.01!BCL3;;chr1:170632907..170632916,+!p22@PRRX1!0.27!0.87!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.27!0.87!PRRX1;;chr20:49547417..49547424,-!p8@ADNP!0.27!0.87!ADNP;;chr15:67459116..67459123,+!p23@SMAD3!0.27!0.87!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.27!0.87!IRX3;;chr16:54320302..54320317,-!p10@IRX3!0.27!0.87!IRX3;;chr17:46128217..46128243,+!p11@NFE2L1!0.27!0.87!NFE2L1;;chr17:46132044..46132080,+!p4@NFE2L1!0.27!0.87!NFE2L1;;chr17:48045917..48045977,+!p1@DLX4!0.27!0.87!DLX4;;chr17:59533618..59533656,+!p2@TBX4!0.27!0.87!TBX4;;chr18:42260840..42260860,+!p2@SETBP1!0.27!0.87!SETBP1;;chr18:42646649..42646652,+!p9@SETBP1!0.27!0.87!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.27!0.87!ZNF568;;chr5:142780189..142780223,-!p6@NR3C1!0.27!0.87!NR3C1;;chr5:158526756..158526797,-!p3@EBF1!0.27!0.87!EBF1;;chr5:174151612..174151633,+!p2@MSX2!0.27!0.87!MSX2;;chr7:28452130..28452154,+!p10@CREB5!0.27!0.87!CREB5;;chr7:96634878..96634900,+!p2@DLX6!0.27!0.87!DLX6;;chr7:96635178..96635181,+!p1@DLX6!0.27!0.87!DLX6;;chr8:60031840..60031869,-!p5@TOX!0.27!0.87!TOX;;chr10:119302232..119302265,+!p1@EMX2!0.27!0.87!EMX2;;chr10:131762385..131762398,-!p4@EBF3!0.27!0.87!EBF3;;chr11:46332679..46332695,+!p12@CREB3L1!0.27!0.87!CREB3L1;;chr12:24103844..24103880,-!p3@SOX5!0.27!0.87!SOX5;;chr12:54378864..54378884,+!p6@HOXC10!0.27!0.87!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.27!0.87!HOXC8;;chr13:37494498..37494511,-!p6@SMAD9!0.27!0.87!SMAD9;;chr14:61190359..61190385,-!p4@SIX4!0.27!0.87!SIX4;;chr9:130966497..130966541,-!p4@CIZ1!0.27!0.87!CIZ1;;chr9:73028433..73028444,-!p15@KLF9!0.27!0.87!KLF9;;chr2:100721881..100721904,-!p6@AFF3!0.27!0.87!AFF3;;chr2:180726254..180726275,-!p4@ZNF385B!0.27!0.87!ZNF385B;;chr2:19558327..19558334,-!p2@OSR1!0.27!0.87!OSR1;;chr3:42695202..42695213,+!p6@ZBTB47!0.27!0.87!ZBTB47;;chr2:43453734..43453751,-!p1@ZFP36L2!0.26!176.57!ZFP36L2;;chr3:193853927..193853944,+!p1@HES1!0.26!53.16!HES1;;chr9:2015335..2015370,+!p1@SMARCA2!0.26!19.70!SMARCA2;;chr12:124873357..124873401,-!p1@NCOR2!0.26!18.54!NCOR2;;chr16:73092898..73092931,-!p1@ZFHX3!0.26!5.65!ZFHX3;;chr19:56111680..56111716,+!p1@ZNF524!0.26!5.50!ZNF524;;chr19:36134528..36134563,+!p1@ETV2!0.26!3.91!ETV2;;chr19:59084872..59084920,-!p2@MZF1!0.26!3.62!MZF1;;chr19:56879472..56879529,+!p2@ZNF542!0.26!2.75!ZNF542;;chr19:10305752..10305792,-!p2@DNMT1!0.26!2.17!DNMT1;;chr7:148823387..148823440,-!p1@ZNF425!0.26!2.17!ZNF425;;chr9:4299552..4299598,-!p5@GLIS3!0.26!2.03!GLIS3;;chr8:116680833..116680881,-!p7@TRPS1!0.26!1.74!TRPS1;;chr8:145159277..145159282,+!p7@MAF1!0.26!1.74!MAF1;;chr17:46127997..46128015,+!p5@NFE2L1!0.26!1.45!NFE2L1;;chr11:707063..707088,-!p4@DEAF1!0.26!1.30!DEAF1;;chr12:125003087..125003141,-!p4@NCOR2!0.26!1.30!NCOR2;;chr17:38498510..38498540,+!p7@RARA!0.26!1.16!RARA;;chr16:31454084..31454115,-!p1@ZNF843!0.26!1.01!ZNF843;;chr12:3068957..3068978,+!p6@TEAD4!0.26!1.01!TEAD4;;chr19:6279932..6280000,-!p1@MLLT1!0.25!40.41!MLLT1;;chr17:38219209..38219230,+!p1@THRA!0.25!20.42!THRA;;chr20:62601243..62601291,-!p1@ZNF512B!0.25!15.35!ZNF512B;;chr1:246729483..246729538,-!p2@TFB2M!0.25!14.63!TFB2M;;chr13:45151259..45151326,-!p2@TSC22D1!0.25!8.98!TSC22D1;;chr18:3450293..3450304,+!p4@TGIF1!0.25!3.19!TGIF1;;chr4:121843844..121843904,-!p1@PRDM5!0.25!3.04!PRDM5;;chr12:48298765..48298783,-!p2@VDR!0.25!2.61!VDR;;chr17:2304226..2304239,-!p3@MNT!0.25!2.46!MNT;;chr20:48807456..48807475,+!p3@CEBPB!0.25!2.32!CEBPB;;chr1:221053049..221053075,+!p3@HLX!0.25!2.03!HLX;;chr12:124457725..124457736,+!p2@ZNF664!0.25!2.03!ZNF664;;chr19:57999082..57999095,+!p2@ZNF419!0.25!1.59!ZNF419;;chr11:65687882..65687902,+!p10@DRAP1!0.25!1.45!DRAP1;;chr2:113057415..113057477,+!p3@ZC3H6!0.25!1.30!ZC3H6;;chr6:43140095..43140145,+!p5@SRF!0.25!1.16!SRF;;chr19:52839490..52839508,+!p2@ZNF610!0.25!1.16!ZNF610;;chr20:48807548..48807572,+!p14@CEBPB!0.25!1.16!CEBPB;;chr9:73028462..73028491,-!p8@KLF9!0.25!1.16!KLF9;;chr22:41735880..41735903,+!p5@ZC3H7B!0.25!1.01!ZC3H7B;;chr18:56530595..56530606,+!p11@ZNF532!0.25!1.01!ZNF532;;chr6:126070769..126070801,+!p1@HEY2!0.25!1.01!HEY2;;chr19:12902289..12902307,+!p1@JUNB!0.24!363.42!JUNB;;chr9:14314566..14314618,-!p1@NFIB!0.24!18.25!NFIB;;chr10:111985713..111985774,+!p2@MXI1!0.24!14.34!MXI1;;chr8:116681194..116681214,-!p1@TRPS1!0.24!14.05!TRPS1;;chrX:128657413..128657456,-!p2@SMARCA1!0.24!13.04!SMARCA1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.24!9.56!ZNF580;;chr16:30583017..30583064,-!p1@ZNF688!0.24!7.39!ZNF688;;chr16:4366021..4366045,+!p@chr16:4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Line 66: Line 43:
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|rna_box=118
|rna_catalog_number=CA402-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2230
|rna_od260/230=
|rna_od260/280=
|rna_position=E6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.18E+08
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.GTGAAA
|sample_age=56
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=chondroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=56 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.73977410675744e-210!GO:0005737;cytoplasm;5.66995810642624e-184!GO:0043226;organelle;1.10646665516072e-152!GO:0043229;intracellular organelle;2.39091576598703e-152!GO:0043231;intracellular membrane-bound organelle;5.52492862829385e-152!GO:0043227;membrane-bound organelle;9.42756677820289e-152!GO:0044444;cytoplasmic part;1.39675854727442e-140!GO:0044422;organelle part;2.28330112512255e-112!GO:0044446;intracellular organelle part;6.09764672644078e-111!GO:0032991;macromolecular complex;1.33451777480896e-77!GO:0005515;protein binding;4.44705508146567e-75!GO:0030529;ribonucleoprotein complex;3.08345010755632e-73!GO:0044237;cellular metabolic process;1.02020203233912e-70!GO:0044238;primary metabolic process;1.03424446444206e-69!GO:0005739;mitochondrion;7.40210911570229e-66!GO:0043170;macromolecule metabolic process;1.63225652998508e-64!GO:0043233;organelle lumen;2.69053436470133e-58!GO:0031974;membrane-enclosed lumen;2.69053436470133e-58!GO:0003723;RNA binding;6.21507921980772e-54!GO:0044428;nuclear part;3.22017772272546e-50!GO:0031090;organelle membrane;3.7552468522552e-49!GO:0005840;ribosome;4.64407182972457e-49!GO:0019538;protein metabolic process;2.48866389911629e-47!GO:0006412;translation;3.73922224319967e-45!GO:0005634;nucleus;1.89920915895209e-44!GO:0044429;mitochondrial part;7.53820243431983e-44!GO:0016043;cellular component organization and biogenesis;7.53820243431983e-44!GO:0003735;structural constituent of ribosome;5.0183164845773e-43!GO:0044260;cellular macromolecule metabolic process;4.94363225277042e-42!GO:0015031;protein transport;3.36180787066605e-41!GO:0044267;cellular protein metabolic process;1.61036099608209e-40!GO:0033036;macromolecule localization;4.25806560182854e-40!GO:0009058;biosynthetic process;7.75681243702434e-39!GO:0045184;establishment of protein localization;1.62359277803163e-38!GO:0033279;ribosomal subunit;2.65535389370994e-38!GO:0043234;protein complex;3.59786755775748e-38!GO:0005829;cytosol;3.66535710706839e-38!GO:0008104;protein localization;5.28219238275678e-38!GO:0009059;macromolecule biosynthetic process;1.97896480591151e-37!GO:0044249;cellular biosynthetic process;9.49742939304353e-37!GO:0031967;organelle envelope;8.0268163136768e-35!GO:0031975;envelope;1.52719365259299e-34!GO:0006396;RNA processing;2.45952127221713e-34!GO:0031981;nuclear lumen;7.42785142533025e-31!GO:0043283;biopolymer metabolic process;9.64067795810222e-30!GO:0016071;mRNA metabolic process;1.97288578645516e-29!GO:0005740;mitochondrial envelope;2.67882110057085e-29!GO:0046907;intracellular transport;2.89177150510932e-29!GO:0010467;gene expression;1.51888094461885e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.97445977540058e-28!GO:0031966;mitochondrial membrane;7.99909986155556e-28!GO:0065003;macromolecular complex assembly;9.45525711341787e-28!GO:0008380;RNA splicing;1.09471318848879e-27!GO:0019866;organelle inner membrane;9.2229471801453e-27!GO:0006886;intracellular protein transport;3.97739801505256e-26!GO:0005743;mitochondrial inner membrane;1.70881671146901e-25!GO:0022607;cellular component assembly;4.87938809924108e-25!GO:0006397;mRNA processing;6.89929833530865e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.8931814935591e-24!GO:0005783;endoplasmic reticulum;4.45129756663121e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.00203529211122e-23!GO:0006119;oxidative phosphorylation;2.62049022246702e-21!GO:0006996;organelle organization and biogenesis;8.10995144263322e-21!GO:0044445;cytosolic part;2.55123040399175e-20!GO:0015935;small ribosomal subunit;8.17776835051013e-20!GO:0043228;non-membrane-bound organelle;9.45725864774571e-20!GO:0043232;intracellular non-membrane-bound organelle;9.45725864774571e-20!GO:0015934;large ribosomal subunit;1.6716002545487e-19!GO:0044455;mitochondrial membrane part;2.6440305089034e-19!GO:0005681;spliceosome;3.56435942760429e-19!GO:0006457;protein folding;4.22256403477539e-19!GO:0005654;nucleoplasm;7.21530177618166e-19!GO:0048770;pigment granule;2.26069455886171e-18!GO:0042470;melanosome;2.26069455886171e-18!GO:0005794;Golgi apparatus;4.09734842973494e-18!GO:0031980;mitochondrial lumen;5.01166757169561e-18!GO:0005759;mitochondrial matrix;5.01166757169561e-18!GO:0012505;endomembrane system;5.03962562545295e-18!GO:0051649;establishment of cellular localization;1.88843093905028e-17!GO:0051641;cellular localization;2.16026718279888e-17!GO:0005746;mitochondrial respiratory chain;9.9618604120694e-17!GO:0044432;endoplasmic reticulum part;1.94550420606527e-16!GO:0051186;cofactor metabolic process;2.42847809879524e-16!GO:0008134;transcription factor binding;3.16311396626031e-16!GO:0044451;nucleoplasm part;8.02761997795085e-16!GO:0022618;protein-RNA complex assembly;8.49434304273422e-16!GO:0016874;ligase activity;1.5746312836123e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.81433985001423e-15!GO:0043285;biopolymer catabolic process;2.38609304710897e-15!GO:0044265;cellular macromolecule catabolic process;3.34310516763618e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.70928529271918e-15!GO:0006512;ubiquitin cycle;6.5255280158171e-15!GO:0016462;pyrophosphatase activity;8.25555216012643e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.86048679839389e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.23430645769786e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.31082197016154e-14!GO:0003954;NADH dehydrogenase activity;1.31082197016154e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31082197016154e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.58370839622615e-14!GO:0008135;translation factor activity, nucleic acid binding;1.71189757036578e-14!GO:0044248;cellular catabolic process;2.7790305624331e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.8948463012183e-14!GO:0009057;macromolecule catabolic process;3.0752257416603e-14!GO:0017111;nucleoside-triphosphatase activity;5.31561468842447e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.4980474686037e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.64750802436721e-14!GO:0019941;modification-dependent protein catabolic process;5.64750802436721e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.64750802436721e-14!GO:0005761;mitochondrial ribosome;5.82140153861416e-14!GO:0000313;organellar ribosome;5.82140153861416e-14!GO:0006259;DNA metabolic process;7.60001654500901e-14!GO:0044257;cellular protein catabolic process;9.02609176639821e-14!GO:0016192;vesicle-mediated transport;1.14399575959374e-13!GO:0030163;protein catabolic process;1.47770880884848e-13!GO:0000166;nucleotide binding;2.17676568152423e-13!GO:0009055;electron carrier activity;2.82963752721745e-13!GO:0006732;coenzyme metabolic process;3.48810672346871e-13!GO:0006605;protein targeting;3.48810672346871e-13!GO:0048193;Golgi vesicle transport;3.54337124419409e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.61238177042402e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.09464006194328e-13!GO:0045271;respiratory chain complex I;7.09464006194328e-13!GO:0005747;mitochondrial respiratory chain complex I;7.09464006194328e-13!GO:0051082;unfolded protein binding;7.50889175099124e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.52032800499927e-13!GO:0042773;ATP synthesis coupled electron transport;8.52032800499927e-13!GO:0005730;nucleolus;2.00031912007749e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.11558797860057e-12!GO:0005793;ER-Golgi intermediate compartment;4.72982908035326e-12!GO:0003676;nucleic acid binding;4.83462482861488e-12!GO:0012501;programmed cell death;1.1374345716556e-11!GO:0006915;apoptosis;2.5933879615763e-11!GO:0003743;translation initiation factor activity;3.6952401643974e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.50025211515642e-11!GO:0005789;endoplasmic reticulum membrane;1.06532548413129e-10!GO:0043412;biopolymer modification;1.58461348684756e-10!GO:0007049;cell cycle;1.7808818512402e-10!GO:0008219;cell death;1.98492563124713e-10!GO:0016265;death;1.98492563124713e-10!GO:0016070;RNA metabolic process;2.08319674113553e-10!GO:0016491;oxidoreductase activity;2.72035236347713e-10!GO:0006413;translational initiation;2.89162540566843e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.75266437433702e-10!GO:0000375;RNA splicing, via transesterification reactions;3.75266437433702e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.75266437433702e-10!GO:0048523;negative regulation of cellular process;4.52435499553123e-10!GO:0006464;protein modification process;9.18504153577777e-10!GO:0016049;cell growth;1.36189699394756e-09!GO:0008361;regulation of cell size;1.40281156299795e-09!GO:0003712;transcription cofactor activity;1.55009128907278e-09!GO:0009056;catabolic process;1.96720216986018e-09!GO:0045333;cellular respiration;2.0190798179858e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.15127448848942e-09!GO:0006461;protein complex assembly;2.33475768793587e-09!GO:0017076;purine nucleotide binding;3.15027445623784e-09!GO:0032553;ribonucleotide binding;4.6081451823702e-09!GO:0032555;purine ribonucleotide binding;4.6081451823702e-09!GO:0042254;ribosome biogenesis and assembly;4.9789710376817e-09!GO:0006446;regulation of translational initiation;5.14219173174956e-09!GO:0006366;transcription from RNA polymerase II promoter;5.78677436445213e-09!GO:0009259;ribonucleotide metabolic process;5.86388608870627e-09!GO:0005768;endosome;7.33870317137112e-09!GO:0009060;aerobic respiration;7.39759691125371e-09!GO:0006163;purine nucleotide metabolic process;8.81587934349405e-09!GO:0009150;purine ribonucleotide metabolic process;9.21062104867753e-09!GO:0008639;small protein conjugating enzyme activity;1.16451388829222e-08!GO:0005788;endoplasmic reticulum lumen;1.25978678140682e-08!GO:0003924;GTPase activity;1.54705402510916e-08!GO:0019787;small conjugating protein ligase activity;1.8858480939452e-08!GO:0008565;protein transporter activity;1.95127295335225e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.99393045699462e-08!GO:0004842;ubiquitin-protein ligase activity;2.33791453513735e-08!GO:0048519;negative regulation of biological process;2.41551311914799e-08!GO:0001558;regulation of cell growth;2.42606243350013e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.61286950957914e-08!GO:0044431;Golgi apparatus part;3.19572566808979e-08!GO:0006164;purine nucleotide biosynthetic process;3.77764901545444e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.79630175254277e-08!GO:0009260;ribonucleotide biosynthetic process;5.25257045340632e-08!GO:0043687;post-translational protein modification;5.92113268046855e-08!GO:0030120;vesicle coat;5.99505999656885e-08!GO:0030662;coated vesicle membrane;5.99505999656885e-08!GO:0006913;nucleocytoplasmic transport;6.55528756492639e-08!GO:0017038;protein import;6.75414145692616e-08!GO:0051188;cofactor biosynthetic process;6.84095484468631e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.18666384662625e-08!GO:0015986;ATP synthesis coupled proton transport;7.18666384662625e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.18666384662625e-08!GO:0051246;regulation of protein metabolic process;8.30478130966729e-08!GO:0005773;vacuole;8.82384896394219e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.37466501732871e-08!GO:0042981;regulation of apoptosis;9.42039732169638e-08!GO:0016881;acid-amino acid ligase activity;1.04591406264768e-07!GO:0022402;cell cycle process;1.07385607650437e-07!GO:0043067;regulation of programmed cell death;1.09141403736096e-07!GO:0009141;nucleoside triphosphate metabolic process;1.09864507418636e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.12244113536085e-07!GO:0051169;nuclear transport;1.15761022806603e-07!GO:0048475;coated membrane;1.32166940261215e-07!GO:0030117;membrane coat;1.32166940261215e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.34182459586052e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.34182459586052e-07!GO:0006099;tricarboxylic acid cycle;1.69010376901477e-07!GO:0046356;acetyl-CoA catabolic process;1.69010376901477e-07!GO:0006974;response to DNA damage stimulus;1.73434947324091e-07!GO:0016604;nuclear body;2.02698693839465e-07!GO:0043069;negative regulation of programmed cell death;2.15638313137638e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.23722890451533e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.23722890451533e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70049888804048e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70049888804048e-07!GO:0051187;cofactor catabolic process;2.73307267232393e-07!GO:0043066;negative regulation of apoptosis;3.21848679671355e-07!GO:0005635;nuclear envelope;3.39206721055162e-07!GO:0006091;generation of precursor metabolites and energy;3.65534276877451e-07!GO:0019829;cation-transporting ATPase activity;3.98174880668672e-07!GO:0009109;coenzyme catabolic process;4.73133453714444e-07!GO:0031965;nuclear membrane;5.71065237839387e-07!GO:0006916;anti-apoptosis;5.71065237839387e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.50063209646308e-07!GO:0006084;acetyl-CoA metabolic process;6.5470391959563e-07!GO:0046034;ATP metabolic process;7.86211378531987e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.97742615760414e-07!GO:0000278;mitotic cell cycle;8.46870990490933e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.90731988955377e-07!GO:0006399;tRNA metabolic process;9.66786531660625e-07!GO:0000323;lytic vacuole;1.00477142439216e-06!GO:0005764;lysosome;1.00477142439216e-06!GO:0006754;ATP biosynthetic process;1.30275388435752e-06!GO:0006753;nucleoside phosphate metabolic process;1.30275388435752e-06!GO:0044453;nuclear membrane part;1.42857381864491e-06!GO:0009117;nucleotide metabolic process;1.5034508133758e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.51041173920176e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.69610982618114e-06!GO:0031324;negative regulation of cellular metabolic process;1.70918858970509e-06!GO:0000139;Golgi membrane;1.92428507850481e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.97273297825706e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.97273297825706e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.97273297825706e-06!GO:0044440;endosomal part;1.98009304972281e-06!GO:0010008;endosome membrane;1.98009304972281e-06!GO:0050794;regulation of cellular process;2.43738773023904e-06!GO:0007005;mitochondrion organization and biogenesis;2.73866156399519e-06!GO:0009108;coenzyme biosynthetic process;2.94131033710784e-06!GO:0044262;cellular carbohydrate metabolic process;3.00302983890308e-06!GO:0043038;amino acid activation;3.18642954600725e-06!GO:0006418;tRNA aminoacylation for protein translation;3.18642954600725e-06!GO:0043039;tRNA aminoacylation;3.18642954600725e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.27149131756037e-06!GO:0009719;response to endogenous stimulus;3.74401263870986e-06!GO:0030554;adenyl nucleotide binding;4.13301716234572e-06!GO:0005524;ATP binding;4.14108894952278e-06!GO:0051726;regulation of cell cycle;4.6668952825709e-06!GO:0042623;ATPase activity, coupled;4.86920026329137e-06!GO:0032559;adenyl ribonucleotide binding;4.86920026329137e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98046605685385e-06!GO:0031988;membrane-bound vesicle;5.37615089187872e-06!GO:0040008;regulation of growth;5.53479647057e-06!GO:0016607;nuclear speck;5.53608927717497e-06!GO:0004298;threonine endopeptidase activity;5.84569183596113e-06!GO:0005525;GTP binding;5.84569183596113e-06!GO:0000074;regulation of progression through cell cycle;5.9667091604524e-06!GO:0065004;protein-DNA complex assembly;6.91023223112478e-06!GO:0016853;isomerase activity;8.18850739498949e-06!GO:0000151;ubiquitin ligase complex;8.20262784587477e-06!GO:0065002;intracellular protein transport across a membrane;8.30259055646455e-06!GO:0045259;proton-transporting ATP synthase complex;8.34362020574431e-06!GO:0016564;transcription repressor activity;8.63409211082307e-06!GO:0005798;Golgi-associated vesicle;8.81586407055629e-06!GO:0006364;rRNA processing;8.89270881831518e-06!GO:0006323;DNA packaging;8.91072959923442e-06!GO:0045454;cell redox homeostasis;8.95838112909623e-06!GO:0016887;ATPase activity;1.15426591132494e-05!GO:0031982;vesicle;1.21026580614673e-05!GO:0051789;response to protein stimulus;1.29148737207457e-05!GO:0006986;response to unfolded protein;1.29148737207457e-05!GO:0031410;cytoplasmic vesicle;1.31233827809923e-05!GO:0016072;rRNA metabolic process;1.35227885659265e-05!GO:0006281;DNA repair;1.35680163401103e-05!GO:0005770;late endosome;1.49810849261725e-05!GO:0051276;chromosome organization and biogenesis;1.50219667999273e-05!GO:0009892;negative regulation of metabolic process;1.71640899596331e-05!GO:0003697;single-stranded DNA binding;1.85199697586031e-05!GO:0005667;transcription factor complex;1.86658450896381e-05!GO:0008654;phospholipid biosynthetic process;1.88475671166311e-05!GO:0003714;transcription corepressor activity;2.35130256988938e-05!GO:0032446;protein modification by small protein conjugation;2.43564171788715e-05!GO:0031252;leading edge;2.48388175272481e-05!GO:0005762;mitochondrial large ribosomal subunit;2.48388175272481e-05!GO:0000315;organellar large ribosomal subunit;2.48388175272481e-05!GO:0016567;protein ubiquitination;2.6352093739833e-05!GO:0006752;group transfer coenzyme metabolic process;2.94195040967986e-05!GO:0000245;spliceosome assembly;3.0802331481881e-05!GO:0006613;cotranslational protein targeting to membrane;3.26828219252433e-05!GO:0051170;nuclear import;3.32356135350123e-05!GO:0008026;ATP-dependent helicase activity;3.36907341340193e-05!GO:0030133;transport vesicle;3.39116549936551e-05!GO:0005643;nuclear pore;3.51148512030125e-05!GO:0019843;rRNA binding;3.84592441683498e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.3134480200313e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.35286477646485e-05!GO:0006606;protein import into nucleus;4.41620990126556e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.98288851266123e-05!GO:0032561;guanyl ribonucleotide binding;5.01361983521367e-05!GO:0019001;guanyl nucleotide binding;5.01361983521367e-05!GO:0043566;structure-specific DNA binding;5.02992075935903e-05!GO:0043623;cellular protein complex assembly;5.47812202373734e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.59160630047031e-05!GO:0045786;negative regulation of progression through cell cycle;5.656078457451e-05!GO:0005905;coated pit;5.92447919214691e-05!GO:0005769;early endosome;6.6377911679452e-05!GO:0004386;helicase activity;7.46219977975819e-05!GO:0016044;membrane organization and biogenesis;7.79602697242805e-05!GO:0016859;cis-trans isomerase activity;8.30952738846994e-05!GO:0030867;rough endoplasmic reticulum membrane;8.55822559686751e-05!GO:0006793;phosphorus metabolic process;8.5634122751483e-05!GO:0006796;phosphate metabolic process;8.5634122751483e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.75842873862839e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.57652832608341e-05!GO:0005791;rough endoplasmic reticulum;0.000100078195593745!GO:0030036;actin cytoskeleton organization and biogenesis;0.000103605835573554!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000105334181108734!GO:0016481;negative regulation of transcription;0.000110809093218661!GO:0016563;transcription activator activity;0.000114894631897719!GO:0003713;transcription coactivator activity;0.000127068902261127!GO:0016740;transferase activity;0.000152305859571549!GO:0019867;outer membrane;0.000156990967017319!GO:0016787;hydrolase activity;0.000164488432710753!GO:0050789;regulation of biological process;0.000167560584169342!GO:0000314;organellar small ribosomal subunit;0.00017276112957699!GO:0005763;mitochondrial small ribosomal subunit;0.00017276112957699!GO:0033116;ER-Golgi intermediate compartment membrane;0.00018621488751297!GO:0046930;pore complex;0.000195124382969409!GO:0006333;chromatin assembly or disassembly;0.000199364552788046!GO:0031968;organelle outer membrane;0.000206398204616403!GO:0006260;DNA replication;0.000221651888778651!GO:0016310;phosphorylation;0.00022273493721962!GO:0043021;ribonucleoprotein binding;0.000227327091289196!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000238450683075026!GO:0016568;chromatin modification;0.000269959195121356!GO:0005520;insulin-like growth factor binding;0.000284144153234419!GO:0048522;positive regulation of cellular process;0.000284616735789248!GO:0007243;protein kinase cascade;0.000295060495967368!GO:0005694;chromosome;0.000306391035915897!GO:0005741;mitochondrial outer membrane;0.000340099804239334!GO:0005048;signal sequence binding;0.000372019955535794!GO:0051427;hormone receptor binding;0.000386884817186171!GO:0022403;cell cycle phase;0.000423355578996624!GO:0050657;nucleic acid transport;0.000423355578996624!GO:0051236;establishment of RNA localization;0.000423355578996624!GO:0050658;RNA transport;0.000423355578996624!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000431581955295051!GO:0006403;RNA localization;0.000463140095923346!GO:0046474;glycerophospholipid biosynthetic process;0.000476283612506326!GO:0004576;oligosaccharyl transferase activity;0.000486337557507843!GO:0008250;oligosaccharyl transferase complex;0.000504125942412019!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000557542201586179!GO:0030663;COPI coated vesicle membrane;0.000574625241248767!GO:0030126;COPI vesicle coat;0.000574625241248767!GO:0000785;chromatin;0.000585929228647341!GO:0005885;Arp2/3 protein complex;0.000607040526236632!GO:0043681;protein import into mitochondrion;0.000607040526236632!GO:0043284;biopolymer biosynthetic process;0.000618032148812494!GO:0003724;RNA helicase activity;0.000643747172168657!GO:0006414;translational elongation;0.000724440418194605!GO:0035257;nuclear hormone receptor binding;0.000762635592404471!GO:0051329;interphase of mitotic cell cycle;0.000767540418420527!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000774817180235798!GO:0051325;interphase;0.000818785206965739!GO:0006612;protein targeting to membrane;0.00084487774374569!GO:0015630;microtubule cytoskeleton;0.000862958100403636!GO:0019752;carboxylic acid metabolic process;0.000905983195259013!GO:0030029;actin filament-based process;0.000905983195259013!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000935008965817875!GO:0051920;peroxiredoxin activity;0.000986860361391172!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00100675584977882!GO:0006082;organic acid metabolic process;0.00101472942542386!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00103307091637075!GO:0016779;nucleotidyltransferase activity;0.00111593959350665!GO:0030137;COPI-coated vesicle;0.00123093071139488!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00124210630255604!GO:0018196;peptidyl-asparagine modification;0.0012688164925895!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0012688164925895!GO:0006334;nucleosome assembly;0.001303894114624!GO:0048471;perinuclear region of cytoplasm;0.00152921209223171!GO:0044427;chromosomal part;0.00154232605219808!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00154232605219808!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00154232605219808!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00154232605219808!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00161457829745259!GO:0007264;small GTPase mediated signal transduction;0.0017610433859117!GO:0046489;phosphoinositide biosynthetic process;0.00176445747240728!GO:0005813;centrosome;0.00177520999144811!GO:0031497;chromatin assembly;0.00178326750725106!GO:0008092;cytoskeletal protein binding;0.0018321154156591!GO:0000087;M phase of mitotic cell cycle;0.00188504715590832!GO:0030118;clathrin coat;0.00198776954973303!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00199376050802906!GO:0019899;enzyme binding;0.00204868196496606!GO:0030658;transport vesicle membrane;0.0020772086493761!GO:0006979;response to oxidative stress;0.00212654483717557!GO:0007067;mitosis;0.00216963179776863!GO:0046467;membrane lipid biosynthetic process;0.00231720922597884!GO:0009165;nucleotide biosynthetic process;0.00232139470943871!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00239944621510345!GO:0030132;clathrin coat of coated pit;0.00240745828298639!GO:0031543;peptidyl-proline dioxygenase activity;0.00245199031254127!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00251935237954338!GO:0043488;regulation of mRNA stability;0.0025455255480543!GO:0043487;regulation of RNA stability;0.0025455255480543!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00256501779994764!GO:0046483;heterocycle metabolic process;0.00269454343091786!GO:0005815;microtubule organizing center;0.00305627492341961!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00306029612429301!GO:0006509;membrane protein ectodomain proteolysis;0.00314692430646341!GO:0033619;membrane protein proteolysis;0.00314692430646341!GO:0030308;negative regulation of cell growth;0.00320697136678217!GO:0045792;negative regulation of cell size;0.00325157806804035!GO:0007050;cell cycle arrest;0.00329058982707387!GO:0006118;electron transport;0.00355043306536012!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00361076622836528!GO:0051540;metal cluster binding;0.00363525988258025!GO:0051536;iron-sulfur cluster binding;0.00363525988258025!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00370581044191789!GO:0048468;cell development;0.00372380637477985!GO:0045892;negative regulation of transcription, DNA-dependent;0.00372380637477985!GO:0003729;mRNA binding;0.00372380637477985!GO:0051028;mRNA transport;0.00391245655400424!GO:0030119;AP-type membrane coat adaptor complex;0.00394543194409728!GO:0003899;DNA-directed RNA polymerase activity;0.00400815569817943!GO:0006740;NADPH regeneration;0.00400815569817943!GO:0006098;pentose-phosphate shunt;0.00400815569817943!GO:0031418;L-ascorbic acid binding;0.00403009651280042!GO:0006891;intra-Golgi vesicle-mediated transport;0.00421914484734813!GO:0019798;procollagen-proline dioxygenase activity;0.00423689799951387!GO:0005583;fibrillar collagen;0.00428887529492312!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00445992606479176!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0045423398910681!GO:0050662;coenzyme binding;0.00457252020017302!GO:0003746;translation elongation factor activity;0.00462352943141411!GO:0048500;signal recognition particle;0.00462586787382864!GO:0006626;protein targeting to mitochondrion;0.0046399122977942!GO:0030880;RNA polymerase complex;0.00481835991594878!GO:0006897;endocytosis;0.00496553372523681!GO:0010324;membrane invagination;0.00496553372523681!GO:0030660;Golgi-associated vesicle membrane;0.00499517652454036!GO:0008180;signalosome;0.0050254830216664!GO:0051287;NAD binding;0.00506423268037742!GO:0008154;actin polymerization and/or depolymerization;0.00507866071948018!GO:0007010;cytoskeleton organization and biogenesis;0.00528732309984512!GO:0051252;regulation of RNA metabolic process;0.00577388880424373!GO:0006383;transcription from RNA polymerase III promoter;0.00579178572359901!GO:0001726;ruffle;0.00581964574490747!GO:0007006;mitochondrial membrane organization and biogenesis;0.00603297284613018!GO:0051101;regulation of DNA binding;0.00634590587447756!GO:0048487;beta-tubulin binding;0.006485831072368!GO:0048518;positive regulation of biological process;0.00652174289489544!GO:0006839;mitochondrial transport;0.00670194947036522!GO:0022890;inorganic cation transmembrane transporter activity;0.00682351595177586!GO:0030027;lamellipodium;0.00683370207428409!GO:0045893;positive regulation of transcription, DNA-dependent;0.00709731907448518!GO:0006790;sulfur metabolic process;0.00723436922287981!GO:0030131;clathrin adaptor complex;0.00723752167490008!GO:0051301;cell division;0.00732284639372186!GO:0005975;carbohydrate metabolic process;0.00732284639372186!GO:0006354;RNA elongation;0.00749442445869402!GO:0008484;sulfuric ester hydrolase activity;0.00766068654001847!GO:0008186;RNA-dependent ATPase activity;0.0076722742309415!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00797693788712694!GO:0015399;primary active transmembrane transporter activity;0.00797693788712694!GO:0051128;regulation of cellular component organization and biogenesis;0.00803568360604823!GO:0006352;transcription initiation;0.00805480231447119!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00815080668888845!GO:0030041;actin filament polymerization;0.00822542126124866!GO:0042802;identical protein binding;0.00828247969565414!GO:0030521;androgen receptor signaling pathway;0.00835587088793763!GO:0000096;sulfur amino acid metabolic process;0.00838712736135162!GO:0030145;manganese ion binding;0.0085718847226687!GO:0031072;heat shock protein binding;0.0085718847226687!GO:0006497;protein amino acid lipidation;0.00858035330349415!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00859522052352037!GO:0030134;ER to Golgi transport vesicle;0.00861632464015448!GO:0043433;negative regulation of transcription factor activity;0.00872001974457334!GO:0005869;dynactin complex;0.00891986059385303!GO:0016197;endosome transport;0.00912275656976137!GO:0003690;double-stranded DNA binding;0.00916435563960832!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00916435563960832!GO:0045047;protein targeting to ER;0.00916435563960832!GO:0006650;glycerophospholipid metabolic process;0.00927293205134807!GO:0045941;positive regulation of transcription;0.00959497825366086!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00960750136474456!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00960750136474456!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00960750136474456!GO:0000428;DNA-directed RNA polymerase complex;0.00960750136474456!GO:0008139;nuclear localization sequence binding;0.00962380288246367!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00962380288246367!GO:0006807;nitrogen compound metabolic process;0.0097609038978069!GO:0051098;regulation of binding;0.0098035866355653!GO:0000049;tRNA binding;0.00999986710184226!GO:0006520;amino acid metabolic process;0.0100325868458743!GO:0007040;lysosome organization and biogenesis;0.0101162522136954!GO:0031902;late endosome membrane;0.0103214959810074!GO:0065009;regulation of a molecular function;0.0105632646890561!GO:0005774;vacuolar membrane;0.0106598287733264!GO:0008610;lipid biosynthetic process;0.0107155319006242!GO:0030659;cytoplasmic vesicle membrane;0.0109170580626898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0109426673684891!GO:0015002;heme-copper terminal oxidase activity;0.0109426673684891!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0109426673684891!GO:0004129;cytochrome-c oxidase activity;0.0109426673684891!GO:0006506;GPI anchor biosynthetic process;0.010952987430632!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0110303445267426!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0110303445267426!GO:0006818;hydrogen transport;0.0110627355013653!GO:0030127;COPII vesicle coat;0.0110636936643972!GO:0012507;ER to Golgi transport vesicle membrane;0.0110636936643972!GO:0015992;proton transport;0.011232768178832!GO:0016363;nuclear matrix;0.0115957225352217!GO:0006950;response to stress;0.0115957225352217!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0115957225352217!GO:0033043;regulation of organelle organization and biogenesis;0.0115957225352217!GO:0007033;vacuole organization and biogenesis;0.0116856065524317!GO:0045926;negative regulation of growth;0.0118769983823376!GO:0043022;ribosome binding;0.0118861878973107!GO:0030176;integral to endoplasmic reticulum membrane;0.0119111975087372!GO:0004177;aminopeptidase activity;0.0122165781466019!GO:0051087;chaperone binding;0.0122347824990021!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0123908358293594!GO:0003756;protein disulfide isomerase activity;0.0124091849406347!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0124091849406347!GO:0008312;7S RNA binding;0.0124225506190734!GO:0019222;regulation of metabolic process;0.0126227734249865!GO:0006595;polyamine metabolic process;0.0126227734249865!GO:0006402;mRNA catabolic process;0.0128651728550145!GO:0030125;clathrin vesicle coat;0.0128651728550145!GO:0030665;clathrin coated vesicle membrane;0.0128651728550145!GO:0009116;nucleoside metabolic process;0.0129239731342125!GO:0007034;vacuolar transport;0.0129613434264249!GO:0035258;steroid hormone receptor binding;0.0133443219564871!GO:0043065;positive regulation of apoptosis;0.0135313804118609!GO:0017166;vinculin binding;0.0143365416391393!GO:0000082;G1/S transition of mitotic cell cycle;0.0146341438979493!GO:0009112;nucleobase metabolic process;0.0147312203935083!GO:0015631;tubulin binding;0.0152637230119712!GO:0044420;extracellular matrix part;0.0154824612986832!GO:0006505;GPI anchor metabolic process;0.0155633666683986!GO:0030833;regulation of actin filament polymerization;0.0155633666683986!GO:0016408;C-acyltransferase activity;0.0155633666683986!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0162313678879389!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0162313678879389!GO:0030865;cortical cytoskeleton organization and biogenesis;0.016453047423655!GO:0051539;4 iron, 4 sulfur cluster binding;0.0164975052496592!GO:0043068;positive regulation of programmed cell death;0.0165267217441771!GO:0042158;lipoprotein biosynthetic process;0.0165957911242531!GO:0031625;ubiquitin protein ligase binding;0.0166538758222576!GO:0005684;U2-dependent spliceosome;0.0166819109121518!GO:0030518;steroid hormone receptor signaling pathway;0.0167079364574658!GO:0008632;apoptotic program;0.0167086389552925!GO:0050811;GABA receptor binding;0.0167086389552925!GO:0006739;NADP metabolic process;0.017104393862!GO:0004004;ATP-dependent RNA helicase activity;0.0172490441541123!GO:0031529;ruffle organization and biogenesis;0.0173536944461204!GO:0003711;transcription elongation regulator activity;0.0173785075501496!GO:0009308;amine metabolic process;0.0173785075501496!GO:0051168;nuclear export;0.0175204002082571!GO:0006778;porphyrin metabolic process;0.0176556375780204!GO:0033013;tetrapyrrole metabolic process;0.0176556375780204!GO:0006749;glutathione metabolic process;0.0182394080323883!GO:0006401;RNA catabolic process;0.0187164849110281!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0191327266754492!GO:0005581;collagen;0.0194865221437314!GO:0000902;cell morphogenesis;0.0201355198745489!GO:0032989;cellular structure morphogenesis;0.0201355198745489!GO:0031901;early endosome membrane;0.0203584255021376!GO:0016860;intramolecular oxidoreductase activity;0.0203723639407633!GO:0048037;cofactor binding;0.0209014877291345!GO:0035035;histone acetyltransferase binding;0.0209680913154135!GO:0000059;protein import into nucleus, docking;0.0212843283415995!GO:0005862;muscle thin filament tropomyosin;0.0212843283415995!GO:0051059;NF-kappaB binding;0.0213507717162404!GO:0008652;amino acid biosynthetic process;0.0215900995456216!GO:0030503;regulation of cell redox homeostasis;0.0218699460097658!GO:0065007;biological regulation;0.0222381714597975!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0238365672355054!GO:0030032;lamellipodium biogenesis;0.0239044147229265!GO:0030199;collagen fibril organization;0.024694993079033!GO:0016251;general RNA polymerase II transcription factor activity;0.024739879502526!GO:0044433;cytoplasmic vesicle part;0.0250265066402585!GO:0019318;hexose metabolic process;0.0252195042835842!GO:0007041;lysosomal transport;0.0253419376357099!GO:0005996;monosaccharide metabolic process;0.0258218307380041!GO:0044437;vacuolar part;0.0259798751377635!GO:0005765;lysosomal membrane;0.0259798751377635!GO:0008147;structural constituent of bone;0.0259817778556444!GO:0009119;ribonucleoside metabolic process;0.0260912815631568!GO:0030384;phosphoinositide metabolic process;0.0273404052373043!GO:0005832;chaperonin-containing T-complex;0.0282411004973819!GO:0006892;post-Golgi vesicle-mediated transport;0.0286378847002418!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0304586219268041!GO:0000339;RNA cap binding;0.0306825205613101!GO:0015036;disulfide oxidoreductase activity;0.0314743372640396!GO:0001666;response to hypoxia;0.0318268722483162!GO:0042168;heme metabolic process;0.0319393878130326!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0322333203493957!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0323189451384172!GO:0004784;superoxide dismutase activity;0.0323189451384172!GO:0032984;macromolecular complex disassembly;0.0331873950183598!GO:0005595;collagen type XII;0.0332665442969984!GO:0007021;tubulin folding;0.0334453816634822!GO:0043492;ATPase activity, coupled to movement of substances;0.0336129146965814!GO:0016272;prefoldin complex;0.0342167724722915!GO:0006007;glucose catabolic process;0.0346778165369347!GO:0006289;nucleotide-excision repair;0.034932520550401!GO:0051235;maintenance of localization;0.034932520550401!GO:0016126;sterol biosynthetic process;0.0349947681238034!GO:0003684;damaged DNA binding;0.035300540141121!GO:0030508;thiol-disulfide exchange intermediate activity;0.0354417760635684!GO:0005801;cis-Golgi network;0.0359220935418186!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0361361966811385!GO:0005637;nuclear inner membrane;0.0361361966811385!GO:0006213;pyrimidine nucleoside metabolic process;0.0369464143918833!GO:0050681;androgen receptor binding;0.0369637661064501!GO:0008033;tRNA processing;0.0382138287754987!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0384187452412655!GO:0019838;growth factor binding;0.038641559940934!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0386697653464313!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0386697653464313!GO:0008629;induction of apoptosis by intracellular signals;0.0395487187319681!GO:0004364;glutathione transferase activity;0.0399939291059433!GO:0032507;maintenance of cellular protein localization;0.0399939291059433!GO:0006779;porphyrin biosynthetic process;0.0405740835861865!GO:0033014;tetrapyrrole biosynthetic process;0.0405740835861865!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0410528847304302!GO:0008637;apoptotic mitochondrial changes;0.0410727370460332!GO:0018202;peptidyl-histidine modification;0.0411234180235368!GO:0030100;regulation of endocytosis;0.0411234180235368!GO:0030832;regulation of actin filament length;0.0416060017764939!GO:0004448;isocitrate dehydrogenase activity;0.0416460729052916!GO:0009967;positive regulation of signal transduction;0.0428962918141286!GO:0006376;mRNA splice site selection;0.043187887759591!GO:0000389;nuclear mRNA 3'-splice site recognition;0.043187887759591!GO:0012506;vesicle membrane;0.0432236372065416!GO:0032535;regulation of cellular component size;0.0432331275292637!GO:0008430;selenium binding;0.0433130424479226!GO:0000279;M phase;0.0436241074810807!GO:0006693;prostaglandin metabolic process;0.0436241074810807!GO:0006692;prostanoid metabolic process;0.0436241074810807!GO:0045185;maintenance of protein localization;0.0437375551406295!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0437771245600152!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0438652828588046!GO:0006635;fatty acid beta-oxidation;0.0439206581116427!GO:0033673;negative regulation of kinase activity;0.0442300948270021!GO:0006469;negative regulation of protein kinase activity;0.0442300948270021!GO:0009303;rRNA transcription;0.044864997629047!GO:0006643;membrane lipid metabolic process;0.0464648064410942!GO:0008022;protein C-terminus binding;0.0467721719968656!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.04708015068915!GO:0043624;cellular protein complex disassembly;0.0477569133298751!GO:0030836;positive regulation of actin filament depolymerization;0.0482674919520653!GO:0032906;transforming growth factor-beta2 production;0.0485086307497301!GO:0032909;regulation of transforming growth factor-beta2 production;0.0485086307497301!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.04912501961108!GO:0043241;protein complex disassembly;0.0494566440159471!GO:0009225;nucleotide-sugar metabolic process;0.0495739443283487!GO:0030911;TPR domain binding;0.0499925023160181
|sample_id=11410
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cartilage
|top_motifs=FOXL1:2.75262907716;ALX4:2.23686427758;EVI1:1.94309507435;UFEwm:1.9101897632;ESR1:1.78202739107;RXR{A,B,G}:1.74447030985;HES1:1.7094161879;NKX3-1:1.41499340748;NR6A1:1.31435174266;ZNF238:1.30859213839;MAFB:1.29418188935;TFCP2:1.27273165584;ATF6:1.25063574598;SMAD1..7,9:1.20091878196;MYBL2:1.19663159459;HIF1A:1.17189887281;GLI1..3:1.13382935789;ZNF423:1.12603467462;HOX{A4,D4}:1.10694401276;HMGA1,2:1.0856574349;PPARG:1.05282662764;GCM1,2:1.04619617622;TEF:1.01952508311;MTF1:0.989575362929;NFE2L1:0.970464813604;TEAD1:0.967049799547;PRDM1:0.928486005779;TFAP4:0.903187306214;GFI1B:0.887821949864;AIRE:0.886372737095;HSF1,2:0.882476195084;GTF2A1,2:0.877677600114;PAX1,9:0.86974231968;TAL1_TCF{3,4,12}:0.855244209243;ZIC1..3:0.846173259281;MTE{core}:0.82799836302;KLF4:0.817783421373;NR1H4:0.804135524747;NKX2-2,8:0.79237891237;ZNF384:0.748046175389;NKX2-1,4:0.73139465193;TBP:0.727672921311;SPZ1:0.726972262325;HMX1:0.724133254482;GZF1:0.707539810831;HOX{A6,A7,B6,B7}:0.68095073575;XBP1:0.680906059333;IKZF1:0.676669061033;HIC1:0.657089846501;NR3C1:0.619293646671;TFAP2{A,C}:0.617618252456;GTF2I:0.60157614134;EBF1:0.599033589275;RREB1:0.59308319289;TFAP2B:0.590427732477;EN1,2:0.585531133382;TLX1..3_NFIC{dimer}:0.56539101956;BPTF:0.549646261968;NFATC1..3:0.515288640362;RXRA_VDR{dimer}:0.50924561629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499508715599;MAZ:0.466970474088;ZBTB6:0.458537349587;XCPE1{core}:0.449235212832;PATZ1:0.419664543591;FOXD3:0.415069758376;STAT2,4,6:0.40721794778;NANOG{mouse}:0.405672438887;GATA4:0.404093769062;POU6F1:0.402572426788;HOX{A5,B5}:0.381231690666;PAX5:0.376883415646;HAND1,2:0.36120003597;TOPORS:0.36011116325;POU1F1:0.351372127357;YY1:0.295824510984;CDC5L:0.271233809433;POU5F1:0.246622740227;SOX5:0.246544444109;ESRRA:0.23259107218;ZNF148:0.231968642134;EP300:0.198491059117;HLF:0.19550561273;LHX3,4:0.189531835568;SRF:0.160683877897;MYFfamily:0.128798524631;MZF1:0.100788226528;TP53:0.0560785251799;REST:0.0531742498315;IRF1,2:0.0364280958858;NHLH1,2:0.033720471109;MYB:0.0285504857857;PAX4:0.0256853963587;NKX6-1,2:0.0104679975274;NFE2L2:0.00782671362951;AHR_ARNT_ARNT2:0.004384998201;ARID5B:0.00205704154509;VSX1,2:-0.0113009739217;STAT5{A,B}:-0.0310482006653;FOXO1,3,4:-0.0500661876804;SP1:-0.0630993360799;EGR1..3:-0.0739318171782;AR:-0.0785091015438;FOXP3:-0.101529315164;HNF1A:-0.109344440922;MED-1{core}:-0.118369160265;MEF2{A,B,C,D}:-0.128023570568;TBX4,5:-0.166522259144;RFX1:-0.179190763384;NR5A1,2:-0.180496727715;CEBPA,B_DDIT3:-0.18438631368;DMAP1_NCOR{1,2}_SMARC:-0.184949589285;BACH2:-0.197431797412;NKX3-2:-0.204170958538;FOX{I1,J2}:-0.207953319209;PAX6:-0.210546047841;CREB1:-0.222830810199;LMO2:-0.244575563174;PRRX1,2:-0.245031230423;FOS_FOS{B,L1}_JUN{B,D}:-0.252279888867;HBP1_HMGB_SSRP1_UBTF:-0.254602000638;STAT1,3:-0.284677480457;CDX1,2,4:-0.286070286295;TFDP1:-0.290640303961;FOXM1:-0.316173035938;ZBTB16:-0.328264994395;ONECUT1,2:-0.349162323453;FOXP1:-0.364716231883;FOX{D1,D2}:-0.37992685958;bHLH_family:-0.38540693172;NKX2-3_NKX2-5:-0.401333510163;HNF4A_NR2F1,2:-0.409338330805;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420778177812;ZFP161:-0.422561676127;ELK1,4_GABP{A,B1}:-0.440212118888;ZNF143:-0.459485022243;NRF1:-0.461839382698;NFKB1_REL_RELA:-0.466851617843;NFE2:-0.466876492192;NFIX:-0.470381939427;PDX1:-0.479425966067;IKZF2:-0.489446310891;RUNX1..3:-0.49234401963;ATF4:-0.503931663951;NFIL3:-0.504812973296;ATF5_CREB3:-0.516382441011;FOSL2:-0.520364749738;SREBF1,2:-0.52250338841;BREu{core}:-0.542617147746;FOXA2:-0.562437525715;DBP:-0.581184723528;ATF2:-0.58547850306;SNAI1..3:-0.585815304582;LEF1_TCF7_TCF7L1,2:-0.591155892713;ADNP_IRX_SIX_ZHX:-0.596567840901;GFI1:-0.655335342819;E2F1..5:-0.665022864612;RFX2..5_RFXANK_RFXAP:-0.675481375069;FOX{F1,F2,J1}:-0.693026004556;HOXA9_MEIS1:-0.695848062462;SOX17:-0.704468632555;PAX3,7:-0.725917412617;JUN:-0.753666257778;IRF7:-0.769296119879;RBPJ:-0.7878629905;ETS1,2:-0.804418690395;SPI1:-0.839351889042;SPIB:-0.867882686479;PITX1..3:-0.886120356443;FOXN1:-0.904417707126;PAX8:-0.918909131802;ZEB1:-0.950734512729;ELF1,2,4:-0.968940987021;SOX2:-0.976725568823;T:-0.999572189398;POU3F1..4:-1.01737478427;FOXQ1:-1.10531938743;TLX2:-1.13253638956;CRX:-1.14716054917;PBX1:-1.20234675415;NFY{A,B,C}:-1.2116720638;PAX2:-1.22336618771;TGIF1:-1.22596969745;CUX2:-1.24843525417;GATA6:-1.46959036159;POU2F1..3:-1.47482966665;OCT4_SOX2{dimer}:-1.47683979413;ALX1:-1.52669045229;RORA:-1.53064129762;MYOD1:-1.5456326901;SOX{8,9,10}:-1.66229448934;NANOG:-1.72086660471
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11410-118E6;search_select_hide=table117:FF:11410-118E6
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Chondrocyte - de diff, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12020
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecartilage
dev stage56 years old adult
sexmale
age56
cell typechondroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2230
catalog numberCA402-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005966
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12020 CAGE DRX008203 DRR009075
Accession ID Hg19

Library idBAMCTSS
CNhs12020 DRZ000500 DRZ001885
Accession ID Hg38

Library idBAMCTSS
CNhs12020 DRZ011850 DRZ013235
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005966
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GTGAAA sRNA-Seq DRX037197 DRR041563
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GTGAAA DRZ007205


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.2
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.374
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.157
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.122
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0587
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.716
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte1.16
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0587
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.74
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.265
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.501
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.11
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.511
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.728
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.228
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.722
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.198
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.198
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.841
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.762
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.481
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.11
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.116
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.823
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0616
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12020

Jaspar motifP-value
MA0002.20.0175
MA0003.10.293
MA0004.10.0998
MA0006.10.106
MA0007.10.516
MA0009.10.329
MA0014.10.333
MA0017.10.876
MA0018.20.00139
MA0019.10.99
MA0024.10.00553
MA0025.10.0247
MA0027.10.465
MA0028.10.00298
MA0029.10.689
MA0030.10.0634
MA0031.10.139
MA0035.20.00456
MA0038.10.0233
MA0039.20.0209
MA0040.10.882
MA0041.10.41
MA0042.10.906
MA0043.18.34298e-4
MA0046.10.144
MA0047.20.741
MA0048.10.0305
MA0050.10.114
MA0051.10.441
MA0052.10.0961
MA0055.10.777
MA0057.10.184
MA0058.10.0279
MA0059.10.289
MA0060.11.91328e-12
MA0061.10.067
MA0062.22.28332e-10
MA0065.20.964
MA0066.10.605
MA0067.10.0032
MA0068.10.325
MA0069.10.15
MA0070.10.614
MA0071.10.581
MA0072.10.0618
MA0073.10.948
MA0074.10.476
MA0076.14.41516e-4
MA0077.10.0404
MA0078.10.762
MA0079.20.783
MA0080.21.48203e-9
MA0081.10.00101
MA0083.10.171
MA0084.10.643
MA0087.10.361
MA0088.10.29
MA0090.10.00531
MA0091.10.321
MA0092.10.523
MA0093.10.0785
MA0099.21.14115e-7
MA0100.10.214
MA0101.11.92003e-4
MA0102.20.338
MA0103.10.0326
MA0104.20.0135
MA0105.10.136
MA0106.10.483
MA0107.14.12988e-4
MA0108.20.161
MA0111.10.446
MA0112.20.0105
MA0113.10.578
MA0114.10.68
MA0115.10.726
MA0116.10.274
MA0117.10.351
MA0119.10.478
MA0122.10.366
MA0124.10.211
MA0125.10.117
MA0131.10.278
MA0135.10.218
MA0136.11.76161e-12
MA0137.20.474
MA0138.20.345
MA0139.10.521
MA0140.10.00582
MA0141.10.116
MA0142.10.0218
MA0143.10.661
MA0144.10.832
MA0145.10.253
MA0146.10.193
MA0147.10.0306
MA0148.10.727
MA0149.10.975
MA0150.10.00136
MA0152.10.0527
MA0153.10.806
MA0154.10.763
MA0155.10.252
MA0156.16.91475e-12
MA0157.10.377
MA0159.10.593
MA0160.10.859
MA0162.10.0844
MA0163.10.0281
MA0164.10.813
MA0258.10.58
MA0259.10.176



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12020

Novel motifP-value
10.703
100.564
1000.949
1010.22
1020.123
1030.689
1040.891
1050.0224
1060.564
1070.0461
1080.157
1090.602
110.775
1100.995
1110.692
1120.99
1130.781
1140.278
1150.00101
1160.0111
1170.346
1180.734
1190.474
120.147
1200.662
1210.266
1220.0441
1230.0376
1240.0908
1250.616
1260.657
1270.706
1280.412
1290.315
130.844
1300.314
1310.518
1320.0229
1330.588
1340.329
1350.695
1360.368
1370.278
1380.501
1390.19
140.341
1400.348
1410.313
1420.617
1430.645
1440.331
1450.806
1460.0972
1470.468
1480.423
1490.0075
150.51
1500.485
1510.797
1520.0117
1530.656
1540.575
1550.729
1560.691
1570.59
1580.0378
1590.899
160.0824
1600.658
1610.581
1620.479
1630.841
1640.0386
1650.426
1660.00839
1670.691
1680.463
1690.0228
170.807
180.707
190.00427
20.303
200.631
210.0366
220.16
230.531
240.0801
250.396
260.895
270.651
280.116
290.17
30.755
300.609
310.636
324.03407e-14
330.706
340.539
350.722
360.0143
370.262
380.636
390.496
40.515
400.13
410.199
420.658
430.906
440.189
450.76
460.725
470.329
480.856
490.554
50.927
500.568
510.807
520.86
530.0965
540.753
550.752
560.995
570.927
580.242
590.0549
60.308
600.747
610.434
620.613
630.321
640.482
650.403
660.0418
670.997
680.569
690.281
70.379
700.223
710.861
720.406
730.00421
740.277
750.68
760.33
776.89005e-4
780.104
799.56579e-4
80.164
800.0136
810.656
820.16
830.597
840.606
850.126
860.895
870.924
880.207
890.0731
90.816
900.228
910.742
920.577
930.831
940.848
950.479
960.897
970.67
980.845
990.0248



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12020


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000246 (human chondrocyte de-differentiated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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