FF:11410-118E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005966 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005966 | ||
|accession_numbers=CAGE;DRX008203;DRR009075;DRZ000500;DRZ001885;DRZ011850;DRZ013235 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037197;DRR041563;DRZ007205 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000037,FF:0000246 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11410-118E6 | |id=FF:11410-118E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000246 | ||
|is_obsolete= | |||
|library_id=CNhs12020 | |||
|library_id_phase_based=2:CNhs12020 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11410 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTGAAA.11410 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11410 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTGAAA.11410 | |||
|name=Chondrocyte - de diff, donor3 | |name=Chondrocyte - de diff, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12020,LSID837,release011,COMPLETED | |profile_hcage=CNhs12020,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0293736339771562,0,0,0,0,-0.00360550183415664,0,0.178657645692686,0.165748450917332,0,0,0,0.0183316859139835,0,0,0,0,0,0,0,0,0,0.629839075878305,0,0.0293736339771562,0,0,0,0.173669788173581,0,0,0.0237559384733672,0,0,0,0,0,0,0,0,0,0,0.0587472679543123,0,0.276225584155883,0.156712528252229,0,0,0,0,0,0,0,0.0051586128643218,0,0,0.0587472679543123,0.110486355415197,0,0.065169968288348,0,0.207051068285253,0,0,-0.0385963592587847,0.0587472679543123,0,0,0,0,0,0,0.0587472679543123,0.156712528252229,0,0,0,0,0.0587472679543123,0,0,0,0.0126609840520493,0.0293736339771562,0,0,0,0,0,0.0840636551231108,0.0846168116847547,0,0.0587472679543123,0,0.099734546436854,0,0.362410589794613,0.0587472679543123,0.0587472679543123,-0.0392880832833941,0.16948379219566,0,0,0,0,0,0,0.110486355415197,0,0,0,0,0.0794534874985705,0,0,0,0,0,0.55069633228456,0,0,0,0.192524744633641,0.393463067134656,0,0,0.0587472679543123,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0587472679543123,0.0587472679543123,-0.0392880832833941,0,0.0587472679543123,0,0.0587472679543123,0.0587472679543123,0.0587472679543123,0.110486355415197,0,0.362410589794613,0,0,0.233955662589976,0.173541103065149,-0.17004278922415,-0.143515142523472,0,0,0.00195078758070295,0,0.334206806999785,0,0.0587472679543123,0,0.0587472679543123,0.0587472679543123,0.0587472679543123,0,0.747987847155212,0,0.722259797647557,0.0293736339771562,0,0,0,0.0973196292746905,-0.0338445464567687,0,0.076456291507535,0.538228076166089,0,0.110486355415197,0.0587472679543123,0,0.267609951539677,0,-0.120879483793741,0.153875682391684,-0.111125232687609,0.156121847626704,-0.04680465889238,0,0,0.0293736339771562,0.293481007285259,0.101111470947398,0,0,0.34740158112626,-0.0630516932031085,0,0,1.16937082254631,0,0.250335790935784,0.239063478357987,0,0.0521243868915564,0,0,0,0,0.0293736339771562,0.110486355415197,0,0,0.0587472679543123,0,0,0.330492502495769,0.23018612135983,0.0982078055767202,0.156712528252229,0.271627684441639,0,0.172377168157369,0,0,-0.101658471514928,0.168641263837936,-0.0316257598225812,-0.0739439841259734,0,0.135068813704647,0.0609034778619278,0.400373861740429,-0.0846688856697163,0.443320797583419,0.349394368369461,0.0587472679543123,-0.0914937660229753,-0.0136002798771403,0.0438738187310126,0.0255785408593643,0,0.0994790607354978,0.0758639610561278,0,0,0.120979378394982,0.158471786350814,0,0.0587472679543123,0.271808249427232,-0.069910284682463,0.0921205828992755,0.122239803042146,0.095841708899792,-0.177612737288292,0.0890852579576281,0.392814743624232,0.0617826222118287,0.273001981064338,0,0.0587472679543123,0,-0.0243506336662335,0.0368451559264182,-0.114397467864589,0.0482701477649855,0.0174512435031093,0.0883682671748612,0.0565371415649661,0.00687036019319349,-0.0596801940706515,0,0.110486355415197,-0.0216025128326135,0,0,0.00348911259405238,0,0.271627684441639,-0.00736016425321306,0.222430820873839,-0.0761430333033153,0,-0.119421790971794,0,-0.0368777147227028,0,-0.193023891826864,0.0905859532577074,0,0.0490770626206412,0,-0.0897254431996609,0.432279949214483,0.0930205737145966,0.199469092873708,-0.0584468268118252,-0.108608035510286,-0.00459913888657881,0.188762308774358,0.520891086347193,0,0.183500851966351,0,0.30635669609339,0.143259131412216,0,0.115749229917873,0.0587472679543123,0.0888427757791208,0,-0.0600758879347539,0,-0.029714934146044,0.397929114283028,-0.135245945052828,-0.0343812377568351,0.0351210272149298,0.114995676217572,0.732430239738817,0,0,0.00572113614260772,0,-0.0398807279194419,0.169962806515668,0.105368709253537,-0.109615822702038,0,0.215329057839278,0,0,0.363658846358193,0.201982502950171,0,-0.201657099728417,0.0126609840520493,0.208975690522544,-0.115971073434934,0.43745854071456,0,0.157710423228977,0,0.110486355415197,-0.0665519758987217,0,-0.138648786083093,-0.194579073532443,0,0.113723771753236,0.0139499968553123,0,0.323900939348914,0.0587472679543123,0.0916355632706975,0,0,0.125770965265367,-0.00614175757493537,0,0.0783562641261145,0.271627684441639,0.0899001658487988,0,0,0,0,0,0,0.0178205131226209,0.153171120933989,0.219439206217465,0,0.110486355415197,0,0,0,0,0.156712528252229,0,0,0,0.90099626294265,0,0.211189391323365,0,0,0,0,0.0883200269743835,-0.0465240338424943,0.110486355415197,0.0666255983766529,0,0,0,0,-0.0861409897892114,0,0,0,0.107729898103271,0.331163476880103,0.161182606475971,0,0,0,0.280220316437008,0,0,0.156712528252229,0.0587472679543123,-0.0876463812026825,0,0.0305081772658298,0.73516551936663,0,0.151235464690537,-0.0228346115925291,0,-0.10273335112021,0.228997775280068,0.00936016332250578,0,0,-0.15086077637469,0,0,-0.0695091715998823,0,0.0587472679543123,0.00788300529679855,0,0,0,0,0.0587472679543123,0.0587472679543123,-0.015826207525471,0,0,0.0587472679543123,0,0,0,0,0,0,0,0,0.227925788442366,0.179403627783128,0.0587472679543123,0,0,0,0,0,0,0.183158869392624,-0.0764317879794191,0.0293736339771562,0,0,0,0.0587472679543123,0.156712528252229,0,0,0.17949484190802,0,0,0.236595850715102,0,0.0587472679543123,0.207051068285253,0,0,0,0.0587472679543123,0.174784373582435,0,0,-0.00573444775187543,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0128327306202503,0.178657645692686,0,0.0587472679543123,0,0,0,0,0,0.299439238227823,0,0.156712528252229,0,0,0.0428281545432523,0,0,0,0.00568997062604097,0,-0.00360550183415664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250714352657045,0.0293736339771562,0,0,0.544837302202926,0.129556499589797,0.0756285028697844,0.0716103786362715,0,0,0.112950247691192,0,0,0,0,0,0,0.0679037284086155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0378762249522275,0,0,0,0,0,0,0,0.173669788173581,0,0,0.0415666320331873,0,0,0,0,0.0587472679543123,0,-0.070434762862016,0.241399825904182,0.00684111448167475,0,0,0,0.063912352875096,0.110486355415197,0.00453347270115863,0.0702288662717766,0,0.131710917455383,0,0,0,0,0,0,0,0,0.198488304874285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629839075878305,0,0,0,0,0,0,0,0,0,0,0,0,0.118297925357551,0,0,0,0,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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA402-R10a | |rna_catalog_number=CA402-R10a | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.18E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTGAAA | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.73977410675744e-210!GO:0005737;cytoplasm;5.66995810642624e-184!GO:0043226;organelle;1.10646665516072e-152!GO:0043229;intracellular organelle;2.39091576598703e-152!GO:0043231;intracellular membrane-bound organelle;5.52492862829385e-152!GO:0043227;membrane-bound organelle;9.42756677820289e-152!GO:0044444;cytoplasmic part;1.39675854727442e-140!GO:0044422;organelle part;2.28330112512255e-112!GO:0044446;intracellular organelle part;6.09764672644078e-111!GO:0032991;macromolecular complex;1.33451777480896e-77!GO:0005515;protein binding;4.44705508146567e-75!GO:0030529;ribonucleoprotein complex;3.08345010755632e-73!GO:0044237;cellular metabolic process;1.02020203233912e-70!GO:0044238;primary metabolic process;1.03424446444206e-69!GO:0005739;mitochondrion;7.40210911570229e-66!GO:0043170;macromolecule metabolic process;1.63225652998508e-64!GO:0043233;organelle lumen;2.69053436470133e-58!GO:0031974;membrane-enclosed lumen;2.69053436470133e-58!GO:0003723;RNA binding;6.21507921980772e-54!GO:0044428;nuclear part;3.22017772272546e-50!GO:0031090;organelle membrane;3.7552468522552e-49!GO:0005840;ribosome;4.64407182972457e-49!GO:0019538;protein metabolic process;2.48866389911629e-47!GO:0006412;translation;3.73922224319967e-45!GO:0005634;nucleus;1.89920915895209e-44!GO:0044429;mitochondrial part;7.53820243431983e-44!GO:0016043;cellular component organization and biogenesis;7.53820243431983e-44!GO:0003735;structural constituent of ribosome;5.0183164845773e-43!GO:0044260;cellular macromolecule metabolic process;4.94363225277042e-42!GO:0015031;protein transport;3.36180787066605e-41!GO:0044267;cellular protein metabolic process;1.61036099608209e-40!GO:0033036;macromolecule localization;4.25806560182854e-40!GO:0009058;biosynthetic process;7.75681243702434e-39!GO:0045184;establishment of protein localization;1.62359277803163e-38!GO:0033279;ribosomal subunit;2.65535389370994e-38!GO:0043234;protein complex;3.59786755775748e-38!GO:0005829;cytosol;3.66535710706839e-38!GO:0008104;protein localization;5.28219238275678e-38!GO:0009059;macromolecule biosynthetic process;1.97896480591151e-37!GO:0044249;cellular biosynthetic process;9.49742939304353e-37!GO:0031967;organelle envelope;8.0268163136768e-35!GO:0031975;envelope;1.52719365259299e-34!GO:0006396;RNA processing;2.45952127221713e-34!GO:0031981;nuclear lumen;7.42785142533025e-31!GO:0043283;biopolymer metabolic process;9.64067795810222e-30!GO:0016071;mRNA metabolic process;1.97288578645516e-29!GO:0005740;mitochondrial envelope;2.67882110057085e-29!GO:0046907;intracellular transport;2.89177150510932e-29!GO:0010467;gene expression;1.51888094461885e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.97445977540058e-28!GO:0031966;mitochondrial membrane;7.99909986155556e-28!GO:0065003;macromolecular complex assembly;9.45525711341787e-28!GO:0008380;RNA splicing;1.09471318848879e-27!GO:0019866;organelle inner membrane;9.2229471801453e-27!GO:0006886;intracellular protein transport;3.97739801505256e-26!GO:0005743;mitochondrial inner membrane;1.70881671146901e-25!GO:0022607;cellular component assembly;4.87938809924108e-25!GO:0006397;mRNA processing;6.89929833530865e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.8931814935591e-24!GO:0005783;endoplasmic reticulum;4.45129756663121e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.00203529211122e-23!GO:0006119;oxidative phosphorylation;2.62049022246702e-21!GO:0006996;organelle organization and biogenesis;8.10995144263322e-21!GO:0044445;cytosolic part;2.55123040399175e-20!GO:0015935;small ribosomal subunit;8.17776835051013e-20!GO:0043228;non-membrane-bound organelle;9.45725864774571e-20!GO:0043232;intracellular non-membrane-bound organelle;9.45725864774571e-20!GO:0015934;large ribosomal subunit;1.6716002545487e-19!GO:0044455;mitochondrial membrane part;2.6440305089034e-19!GO:0005681;spliceosome;3.56435942760429e-19!GO:0006457;protein folding;4.22256403477539e-19!GO:0005654;nucleoplasm;7.21530177618166e-19!GO:0048770;pigment granule;2.26069455886171e-18!GO:0042470;melanosome;2.26069455886171e-18!GO:0005794;Golgi apparatus;4.09734842973494e-18!GO:0031980;mitochondrial lumen;5.01166757169561e-18!GO:0005759;mitochondrial matrix;5.01166757169561e-18!GO:0012505;endomembrane system;5.03962562545295e-18!GO:0051649;establishment of cellular localization;1.88843093905028e-17!GO:0051641;cellular localization;2.16026718279888e-17!GO:0005746;mitochondrial respiratory chain;9.9618604120694e-17!GO:0044432;endoplasmic reticulum part;1.94550420606527e-16!GO:0051186;cofactor metabolic process;2.42847809879524e-16!GO:0008134;transcription factor binding;3.16311396626031e-16!GO:0044451;nucleoplasm part;8.02761997795085e-16!GO:0022618;protein-RNA complex assembly;8.49434304273422e-16!GO:0016874;ligase activity;1.5746312836123e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.81433985001423e-15!GO:0043285;biopolymer catabolic process;2.38609304710897e-15!GO:0044265;cellular macromolecule catabolic process;3.34310516763618e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.70928529271918e-15!GO:0006512;ubiquitin cycle;6.5255280158171e-15!GO:0016462;pyrophosphatase activity;8.25555216012643e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.86048679839389e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.23430645769786e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.31082197016154e-14!GO:0003954;NADH dehydrogenase activity;1.31082197016154e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31082197016154e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.58370839622615e-14!GO:0008135;translation factor activity, nucleic acid binding;1.71189757036578e-14!GO:0044248;cellular catabolic process;2.7790305624331e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.8948463012183e-14!GO:0009057;macromolecule catabolic process;3.0752257416603e-14!GO:0017111;nucleoside-triphosphatase activity;5.31561468842447e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.4980474686037e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.64750802436721e-14!GO:0019941;modification-dependent protein catabolic process;5.64750802436721e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.64750802436721e-14!GO:0005761;mitochondrial ribosome;5.82140153861416e-14!GO:0000313;organellar ribosome;5.82140153861416e-14!GO:0006259;DNA metabolic process;7.60001654500901e-14!GO:0044257;cellular protein catabolic process;9.02609176639821e-14!GO:0016192;vesicle-mediated transport;1.14399575959374e-13!GO:0030163;protein catabolic process;1.47770880884848e-13!GO:0000166;nucleotide binding;2.17676568152423e-13!GO:0009055;electron carrier activity;2.82963752721745e-13!GO:0006732;coenzyme metabolic process;3.48810672346871e-13!GO:0006605;protein targeting;3.48810672346871e-13!GO:0048193;Golgi vesicle transport;3.54337124419409e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.61238177042402e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.09464006194328e-13!GO:0045271;respiratory chain complex I;7.09464006194328e-13!GO:0005747;mitochondrial respiratory chain complex I;7.09464006194328e-13!GO:0051082;unfolded protein binding;7.50889175099124e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.52032800499927e-13!GO:0042773;ATP synthesis coupled electron transport;8.52032800499927e-13!GO:0005730;nucleolus;2.00031912007749e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.11558797860057e-12!GO:0005793;ER-Golgi intermediate compartment;4.72982908035326e-12!GO:0003676;nucleic acid binding;4.83462482861488e-12!GO:0012501;programmed cell death;1.1374345716556e-11!GO:0006915;apoptosis;2.5933879615763e-11!GO:0003743;translation initiation factor activity;3.6952401643974e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.50025211515642e-11!GO:0005789;endoplasmic reticulum membrane;1.06532548413129e-10!GO:0043412;biopolymer modification;1.58461348684756e-10!GO:0007049;cell cycle;1.7808818512402e-10!GO:0008219;cell death;1.98492563124713e-10!GO:0016265;death;1.98492563124713e-10!GO:0016070;RNA metabolic process;2.08319674113553e-10!GO:0016491;oxidoreductase activity;2.72035236347713e-10!GO:0006413;translational initiation;2.89162540566843e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.75266437433702e-10!GO:0000375;RNA splicing, via transesterification reactions;3.75266437433702e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.75266437433702e-10!GO:0048523;negative regulation of cellular process;4.52435499553123e-10!GO:0006464;protein modification process;9.18504153577777e-10!GO:0016049;cell growth;1.36189699394756e-09!GO:0008361;regulation of cell size;1.40281156299795e-09!GO:0003712;transcription cofactor activity;1.55009128907278e-09!GO:0009056;catabolic process;1.96720216986018e-09!GO:0045333;cellular respiration;2.0190798179858e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.15127448848942e-09!GO:0006461;protein complex assembly;2.33475768793587e-09!GO:0017076;purine nucleotide binding;3.15027445623784e-09!GO:0032553;ribonucleotide binding;4.6081451823702e-09!GO:0032555;purine ribonucleotide binding;4.6081451823702e-09!GO:0042254;ribosome biogenesis and assembly;4.9789710376817e-09!GO:0006446;regulation of translational initiation;5.14219173174956e-09!GO:0006366;transcription from RNA polymerase II promoter;5.78677436445213e-09!GO:0009259;ribonucleotide metabolic process;5.86388608870627e-09!GO:0005768;endosome;7.33870317137112e-09!GO:0009060;aerobic respiration;7.39759691125371e-09!GO:0006163;purine nucleotide metabolic process;8.81587934349405e-09!GO:0009150;purine ribonucleotide metabolic process;9.21062104867753e-09!GO:0008639;small protein conjugating enzyme activity;1.16451388829222e-08!GO:0005788;endoplasmic reticulum lumen;1.25978678140682e-08!GO:0003924;GTPase activity;1.54705402510916e-08!GO:0019787;small conjugating protein ligase activity;1.8858480939452e-08!GO:0008565;protein transporter activity;1.95127295335225e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.99393045699462e-08!GO:0004842;ubiquitin-protein ligase activity;2.33791453513735e-08!GO:0048519;negative regulation of biological process;2.41551311914799e-08!GO:0001558;regulation of cell growth;2.42606243350013e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.61286950957914e-08!GO:0044431;Golgi apparatus part;3.19572566808979e-08!GO:0006164;purine nucleotide biosynthetic process;3.77764901545444e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.79630175254277e-08!GO:0009260;ribonucleotide biosynthetic process;5.25257045340632e-08!GO:0043687;post-translational protein modification;5.92113268046855e-08!GO:0030120;vesicle coat;5.99505999656885e-08!GO:0030662;coated vesicle membrane;5.99505999656885e-08!GO:0006913;nucleocytoplasmic transport;6.55528756492639e-08!GO:0017038;protein import;6.75414145692616e-08!GO:0051188;cofactor biosynthetic process;6.84095484468631e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.18666384662625e-08!GO:0015986;ATP synthesis coupled proton transport;7.18666384662625e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.18666384662625e-08!GO:0051246;regulation of protein metabolic process;8.30478130966729e-08!GO:0005773;vacuole;8.82384896394219e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.37466501732871e-08!GO:0042981;regulation of apoptosis;9.42039732169638e-08!GO:0016881;acid-amino acid ligase activity;1.04591406264768e-07!GO:0022402;cell cycle process;1.07385607650437e-07!GO:0043067;regulation of programmed cell death;1.09141403736096e-07!GO:0009141;nucleoside triphosphate metabolic process;1.09864507418636e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.12244113536085e-07!GO:0051169;nuclear transport;1.15761022806603e-07!GO:0048475;coated membrane;1.32166940261215e-07!GO:0030117;membrane coat;1.32166940261215e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.34182459586052e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.34182459586052e-07!GO:0006099;tricarboxylic acid cycle;1.69010376901477e-07!GO:0046356;acetyl-CoA catabolic process;1.69010376901477e-07!GO:0006974;response to DNA damage stimulus;1.73434947324091e-07!GO:0016604;nuclear body;2.02698693839465e-07!GO:0043069;negative regulation of programmed cell death;2.15638313137638e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.23722890451533e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.23722890451533e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70049888804048e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70049888804048e-07!GO:0051187;cofactor catabolic process;2.73307267232393e-07!GO:0043066;negative regulation of apoptosis;3.21848679671355e-07!GO:0005635;nuclear envelope;3.39206721055162e-07!GO:0006091;generation of precursor metabolites and energy;3.65534276877451e-07!GO:0019829;cation-transporting ATPase activity;3.98174880668672e-07!GO:0009109;coenzyme catabolic process;4.73133453714444e-07!GO:0031965;nuclear membrane;5.71065237839387e-07!GO:0006916;anti-apoptosis;5.71065237839387e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.50063209646308e-07!GO:0006084;acetyl-CoA metabolic process;6.5470391959563e-07!GO:0046034;ATP metabolic process;7.86211378531987e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.97742615760414e-07!GO:0000278;mitotic cell cycle;8.46870990490933e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.90731988955377e-07!GO:0006399;tRNA metabolic process;9.66786531660625e-07!GO:0000323;lytic vacuole;1.00477142439216e-06!GO:0005764;lysosome;1.00477142439216e-06!GO:0006754;ATP biosynthetic process;1.30275388435752e-06!GO:0006753;nucleoside phosphate metabolic process;1.30275388435752e-06!GO:0044453;nuclear membrane part;1.42857381864491e-06!GO:0009117;nucleotide metabolic process;1.5034508133758e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.51041173920176e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.69610982618114e-06!GO:0031324;negative regulation of cellular metabolic process;1.70918858970509e-06!GO:0000139;Golgi membrane;1.92428507850481e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.97273297825706e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.97273297825706e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.97273297825706e-06!GO:0044440;endosomal part;1.98009304972281e-06!GO:0010008;endosome membrane;1.98009304972281e-06!GO:0050794;regulation of cellular process;2.43738773023904e-06!GO:0007005;mitochondrion organization and biogenesis;2.73866156399519e-06!GO:0009108;coenzyme biosynthetic process;2.94131033710784e-06!GO:0044262;cellular carbohydrate metabolic process;3.00302983890308e-06!GO:0043038;amino acid activation;3.18642954600725e-06!GO:0006418;tRNA aminoacylation for protein translation;3.18642954600725e-06!GO:0043039;tRNA aminoacylation;3.18642954600725e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.27149131756037e-06!GO:0009719;response to endogenous stimulus;3.74401263870986e-06!GO:0030554;adenyl nucleotide binding;4.13301716234572e-06!GO:0005524;ATP binding;4.14108894952278e-06!GO:0051726;regulation of cell cycle;4.6668952825709e-06!GO:0042623;ATPase activity, coupled;4.86920026329137e-06!GO:0032559;adenyl ribonucleotide binding;4.86920026329137e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98046605685385e-06!GO:0031988;membrane-bound vesicle;5.37615089187872e-06!GO:0040008;regulation of growth;5.53479647057e-06!GO:0016607;nuclear speck;5.53608927717497e-06!GO:0004298;threonine endopeptidase activity;5.84569183596113e-06!GO:0005525;GTP binding;5.84569183596113e-06!GO:0000074;regulation of progression through cell cycle;5.9667091604524e-06!GO:0065004;protein-DNA complex assembly;6.91023223112478e-06!GO:0016853;isomerase activity;8.18850739498949e-06!GO:0000151;ubiquitin ligase complex;8.20262784587477e-06!GO:0065002;intracellular protein transport across a membrane;8.30259055646455e-06!GO:0045259;proton-transporting ATP synthase complex;8.34362020574431e-06!GO:0016564;transcription repressor activity;8.63409211082307e-06!GO:0005798;Golgi-associated vesicle;8.81586407055629e-06!GO:0006364;rRNA processing;8.89270881831518e-06!GO:0006323;DNA packaging;8.91072959923442e-06!GO:0045454;cell redox homeostasis;8.95838112909623e-06!GO:0016887;ATPase activity;1.15426591132494e-05!GO:0031982;vesicle;1.21026580614673e-05!GO:0051789;response to protein stimulus;1.29148737207457e-05!GO:0006986;response to unfolded protein;1.29148737207457e-05!GO:0031410;cytoplasmic vesicle;1.31233827809923e-05!GO:0016072;rRNA metabolic process;1.35227885659265e-05!GO:0006281;DNA repair;1.35680163401103e-05!GO:0005770;late endosome;1.49810849261725e-05!GO:0051276;chromosome organization and biogenesis;1.50219667999273e-05!GO:0009892;negative regulation of metabolic process;1.71640899596331e-05!GO:0003697;single-stranded DNA binding;1.85199697586031e-05!GO:0005667;transcription factor complex;1.86658450896381e-05!GO:0008654;phospholipid biosynthetic process;1.88475671166311e-05!GO:0003714;transcription corepressor activity;2.35130256988938e-05!GO:0032446;protein modification by small protein conjugation;2.43564171788715e-05!GO:0031252;leading edge;2.48388175272481e-05!GO:0005762;mitochondrial large ribosomal subunit;2.48388175272481e-05!GO:0000315;organellar large ribosomal subunit;2.48388175272481e-05!GO:0016567;protein ubiquitination;2.6352093739833e-05!GO:0006752;group transfer coenzyme metabolic process;2.94195040967986e-05!GO:0000245;spliceosome assembly;3.0802331481881e-05!GO:0006613;cotranslational protein targeting to membrane;3.26828219252433e-05!GO:0051170;nuclear import;3.32356135350123e-05!GO:0008026;ATP-dependent helicase activity;3.36907341340193e-05!GO:0030133;transport vesicle;3.39116549936551e-05!GO:0005643;nuclear pore;3.51148512030125e-05!GO:0019843;rRNA binding;3.84592441683498e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.3134480200313e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.35286477646485e-05!GO:0006606;protein import into nucleus;4.41620990126556e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.98288851266123e-05!GO:0032561;guanyl ribonucleotide binding;5.01361983521367e-05!GO:0019001;guanyl nucleotide binding;5.01361983521367e-05!GO:0043566;structure-specific DNA binding;5.02992075935903e-05!GO:0043623;cellular protein complex assembly;5.47812202373734e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.59160630047031e-05!GO:0045786;negative regulation of progression through cell cycle;5.656078457451e-05!GO:0005905;coated pit;5.92447919214691e-05!GO:0005769;early endosome;6.6377911679452e-05!GO:0004386;helicase activity;7.46219977975819e-05!GO:0016044;membrane organization and biogenesis;7.79602697242805e-05!GO:0016859;cis-trans isomerase activity;8.30952738846994e-05!GO:0030867;rough endoplasmic reticulum membrane;8.55822559686751e-05!GO:0006793;phosphorus metabolic process;8.5634122751483e-05!GO:0006796;phosphate metabolic process;8.5634122751483e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.75842873862839e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.57652832608341e-05!GO:0005791;rough endoplasmic reticulum;0.000100078195593745!GO:0030036;actin cytoskeleton organization and biogenesis;0.000103605835573554!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000105334181108734!GO:0016481;negative regulation of transcription;0.000110809093218661!GO:0016563;transcription activator activity;0.000114894631897719!GO:0003713;transcription coactivator activity;0.000127068902261127!GO:0016740;transferase activity;0.000152305859571549!GO:0019867;outer membrane;0.000156990967017319!GO:0016787;hydrolase activity;0.000164488432710753!GO:0050789;regulation of biological process;0.000167560584169342!GO:0000314;organellar small ribosomal subunit;0.00017276112957699!GO:0005763;mitochondrial small ribosomal subunit;0.00017276112957699!GO:0033116;ER-Golgi intermediate compartment membrane;0.00018621488751297!GO:0046930;pore complex;0.000195124382969409!GO:0006333;chromatin assembly or disassembly;0.000199364552788046!GO:0031968;organelle outer membrane;0.000206398204616403!GO:0006260;DNA replication;0.000221651888778651!GO:0016310;phosphorylation;0.00022273493721962!GO:0043021;ribonucleoprotein binding;0.000227327091289196!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000238450683075026!GO:0016568;chromatin modification;0.000269959195121356!GO:0005520;insulin-like growth factor binding;0.000284144153234419!GO:0048522;positive regulation of cellular process;0.000284616735789248!GO:0007243;protein kinase cascade;0.000295060495967368!GO:0005694;chromosome;0.000306391035915897!GO:0005741;mitochondrial outer membrane;0.000340099804239334!GO:0005048;signal sequence binding;0.000372019955535794!GO:0051427;hormone receptor binding;0.000386884817186171!GO:0022403;cell cycle phase;0.000423355578996624!GO:0050657;nucleic acid transport;0.000423355578996624!GO:0051236;establishment of RNA localization;0.000423355578996624!GO:0050658;RNA transport;0.000423355578996624!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000431581955295051!GO:0006403;RNA localization;0.000463140095923346!GO:0046474;glycerophospholipid biosynthetic process;0.000476283612506326!GO:0004576;oligosaccharyl transferase activity;0.000486337557507843!GO:0008250;oligosaccharyl transferase complex;0.000504125942412019!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000557542201586179!GO:0030663;COPI coated vesicle membrane;0.000574625241248767!GO:0030126;COPI vesicle coat;0.000574625241248767!GO:0000785;chromatin;0.000585929228647341!GO:0005885;Arp2/3 protein complex;0.000607040526236632!GO:0043681;protein import into mitochondrion;0.000607040526236632!GO:0043284;biopolymer biosynthetic process;0.000618032148812494!GO:0003724;RNA helicase activity;0.000643747172168657!GO:0006414;translational elongation;0.000724440418194605!GO:0035257;nuclear hormone receptor binding;0.000762635592404471!GO:0051329;interphase of mitotic cell cycle;0.000767540418420527!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000774817180235798!GO:0051325;interphase;0.000818785206965739!GO:0006612;protein targeting to membrane;0.00084487774374569!GO:0015630;microtubule cytoskeleton;0.000862958100403636!GO:0019752;carboxylic acid metabolic process;0.000905983195259013!GO:0030029;actin filament-based process;0.000905983195259013!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000935008965817875!GO:0051920;peroxiredoxin activity;0.000986860361391172!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00100675584977882!GO:0006082;organic acid metabolic process;0.00101472942542386!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00103307091637075!GO:0016779;nucleotidyltransferase activity;0.00111593959350665!GO:0030137;COPI-coated vesicle;0.00123093071139488!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00124210630255604!GO:0018196;peptidyl-asparagine modification;0.0012688164925895!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0012688164925895!GO:0006334;nucleosome assembly;0.001303894114624!GO:0048471;perinuclear region of cytoplasm;0.00152921209223171!GO:0044427;chromosomal part;0.00154232605219808!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00154232605219808!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00154232605219808!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00154232605219808!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00161457829745259!GO:0007264;small GTPase mediated signal transduction;0.0017610433859117!GO:0046489;phosphoinositide biosynthetic process;0.00176445747240728!GO:0005813;centrosome;0.00177520999144811!GO:0031497;chromatin assembly;0.00178326750725106!GO:0008092;cytoskeletal protein binding;0.0018321154156591!GO:0000087;M phase of mitotic cell cycle;0.00188504715590832!GO:0030118;clathrin coat;0.00198776954973303!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00199376050802906!GO:0019899;enzyme binding;0.00204868196496606!GO:0030658;transport vesicle membrane;0.0020772086493761!GO:0006979;response to oxidative stress;0.00212654483717557!GO:0007067;mitosis;0.00216963179776863!GO:0046467;membrane lipid biosynthetic process;0.00231720922597884!GO:0009165;nucleotide biosynthetic process;0.00232139470943871!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00239944621510345!GO:0030132;clathrin coat of coated pit;0.00240745828298639!GO:0031543;peptidyl-proline dioxygenase activity;0.00245199031254127!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00251935237954338!GO:0043488;regulation of mRNA stability;0.0025455255480543!GO:0043487;regulation of RNA stability;0.0025455255480543!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00256501779994764!GO:0046483;heterocycle metabolic process;0.00269454343091786!GO:0005815;microtubule organizing center;0.00305627492341961!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00306029612429301!GO:0006509;membrane protein ectodomain proteolysis;0.00314692430646341!GO:0033619;membrane protein proteolysis;0.00314692430646341!GO:0030308;negative regulation of cell growth;0.00320697136678217!GO:0045792;negative regulation of cell size;0.00325157806804035!GO:0007050;cell cycle arrest;0.00329058982707387!GO:0006118;electron transport;0.00355043306536012!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00361076622836528!GO:0051540;metal cluster binding;0.00363525988258025!GO:0051536;iron-sulfur cluster binding;0.00363525988258025!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00370581044191789!GO:0048468;cell development;0.00372380637477985!GO:0045892;negative regulation of transcription, DNA-dependent;0.00372380637477985!GO:0003729;mRNA binding;0.00372380637477985!GO:0051028;mRNA transport;0.00391245655400424!GO:0030119;AP-type membrane coat adaptor complex;0.00394543194409728!GO:0003899;DNA-directed RNA polymerase activity;0.00400815569817943!GO:0006740;NADPH regeneration;0.00400815569817943!GO:0006098;pentose-phosphate shunt;0.00400815569817943!GO:0031418;L-ascorbic acid binding;0.00403009651280042!GO:0006891;intra-Golgi vesicle-mediated transport;0.00421914484734813!GO:0019798;procollagen-proline dioxygenase activity;0.00423689799951387!GO:0005583;fibrillar collagen;0.00428887529492312!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00445992606479176!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0045423398910681!GO:0050662;coenzyme binding;0.00457252020017302!GO:0003746;translation elongation factor activity;0.00462352943141411!GO:0048500;signal recognition particle;0.00462586787382864!GO:0006626;protein targeting to mitochondrion;0.0046399122977942!GO:0030880;RNA polymerase complex;0.00481835991594878!GO:0006897;endocytosis;0.00496553372523681!GO:0010324;membrane invagination;0.00496553372523681!GO:0030660;Golgi-associated vesicle membrane;0.00499517652454036!GO:0008180;signalosome;0.0050254830216664!GO:0051287;NAD binding;0.00506423268037742!GO:0008154;actin polymerization and/or depolymerization;0.00507866071948018!GO:0007010;cytoskeleton organization and biogenesis;0.00528732309984512!GO:0051252;regulation of RNA metabolic process;0.00577388880424373!GO:0006383;transcription from RNA polymerase III promoter;0.00579178572359901!GO:0001726;ruffle;0.00581964574490747!GO:0007006;mitochondrial membrane organization and biogenesis;0.00603297284613018!GO:0051101;regulation of DNA binding;0.00634590587447756!GO:0048487;beta-tubulin binding;0.006485831072368!GO:0048518;positive regulation of biological process;0.00652174289489544!GO:0006839;mitochondrial transport;0.00670194947036522!GO:0022890;inorganic cation transmembrane transporter activity;0.00682351595177586!GO:0030027;lamellipodium;0.00683370207428409!GO:0045893;positive regulation of transcription, DNA-dependent;0.00709731907448518!GO:0006790;sulfur metabolic process;0.00723436922287981!GO:0030131;clathrin adaptor complex;0.00723752167490008!GO:0051301;cell division;0.00732284639372186!GO:0005975;carbohydrate metabolic process;0.00732284639372186!GO:0006354;RNA elongation;0.00749442445869402!GO:0008484;sulfuric ester hydrolase activity;0.00766068654001847!GO:0008186;RNA-dependent ATPase activity;0.0076722742309415!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00797693788712694!GO:0015399;primary active transmembrane transporter activity;0.00797693788712694!GO:0051128;regulation of cellular component organization and biogenesis;0.00803568360604823!GO:0006352;transcription initiation;0.00805480231447119!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00815080668888845!GO:0030041;actin filament polymerization;0.00822542126124866!GO:0042802;identical protein binding;0.00828247969565414!GO:0030521;androgen receptor signaling pathway;0.00835587088793763!GO:0000096;sulfur amino acid metabolic process;0.00838712736135162!GO:0030145;manganese ion binding;0.0085718847226687!GO:0031072;heat shock protein binding;0.0085718847226687!GO:0006497;protein amino acid lipidation;0.00858035330349415!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00859522052352037!GO:0030134;ER to Golgi transport vesicle;0.00861632464015448!GO:0043433;negative regulation of transcription factor activity;0.00872001974457334!GO:0005869;dynactin complex;0.00891986059385303!GO:0016197;endosome transport;0.00912275656976137!GO:0003690;double-stranded DNA binding;0.00916435563960832!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00916435563960832!GO:0045047;protein targeting to ER;0.00916435563960832!GO:0006650;glycerophospholipid metabolic process;0.00927293205134807!GO:0045941;positive regulation of transcription;0.00959497825366086!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00960750136474456!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00960750136474456!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00960750136474456!GO:0000428;DNA-directed RNA polymerase complex;0.00960750136474456!GO:0008139;nuclear localization sequence binding;0.00962380288246367!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00962380288246367!GO:0006807;nitrogen compound metabolic process;0.0097609038978069!GO:0051098;regulation of binding;0.0098035866355653!GO:0000049;tRNA binding;0.00999986710184226!GO:0006520;amino acid metabolic process;0.0100325868458743!GO:0007040;lysosome organization and biogenesis;0.0101162522136954!GO:0031902;late endosome membrane;0.0103214959810074!GO:0065009;regulation of a molecular function;0.0105632646890561!GO:0005774;vacuolar membrane;0.0106598287733264!GO:0008610;lipid biosynthetic process;0.0107155319006242!GO:0030659;cytoplasmic vesicle membrane;0.0109170580626898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0109426673684891!GO:0015002;heme-copper terminal oxidase activity;0.0109426673684891!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0109426673684891!GO:0004129;cytochrome-c oxidase activity;0.0109426673684891!GO:0006506;GPI anchor biosynthetic process;0.010952987430632!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0110303445267426!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0110303445267426!GO:0006818;hydrogen transport;0.0110627355013653!GO:0030127;COPII vesicle coat;0.0110636936643972!GO:0012507;ER to Golgi transport vesicle membrane;0.0110636936643972!GO:0015992;proton transport;0.011232768178832!GO:0016363;nuclear matrix;0.0115957225352217!GO:0006950;response to stress;0.0115957225352217!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0115957225352217!GO:0033043;regulation of organelle organization and biogenesis;0.0115957225352217!GO:0007033;vacuole organization and biogenesis;0.0116856065524317!GO:0045926;negative regulation of growth;0.0118769983823376!GO:0043022;ribosome binding;0.0118861878973107!GO:0030176;integral to endoplasmic reticulum membrane;0.0119111975087372!GO:0004177;aminopeptidase activity;0.0122165781466019!GO:0051087;chaperone binding;0.0122347824990021!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0123908358293594!GO:0003756;protein disulfide isomerase activity;0.0124091849406347!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0124091849406347!GO:0008312;7S RNA binding;0.0124225506190734!GO:0019222;regulation of metabolic process;0.0126227734249865!GO:0006595;polyamine metabolic process;0.0126227734249865!GO:0006402;mRNA catabolic process;0.0128651728550145!GO:0030125;clathrin vesicle coat;0.0128651728550145!GO:0030665;clathrin coated vesicle membrane;0.0128651728550145!GO:0009116;nucleoside metabolic process;0.0129239731342125!GO:0007034;vacuolar transport;0.0129613434264249!GO:0035258;steroid hormone receptor binding;0.0133443219564871!GO:0043065;positive regulation of apoptosis;0.0135313804118609!GO:0017166;vinculin binding;0.0143365416391393!GO:0000082;G1/S transition of mitotic cell cycle;0.0146341438979493!GO:0009112;nucleobase metabolic process;0.0147312203935083!GO:0015631;tubulin binding;0.0152637230119712!GO:0044420;extracellular matrix part;0.0154824612986832!GO:0006505;GPI anchor metabolic process;0.0155633666683986!GO:0030833;regulation of actin filament polymerization;0.0155633666683986!GO:0016408;C-acyltransferase activity;0.0155633666683986!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0162313678879389!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0162313678879389!GO:0030865;cortical cytoskeleton organization and biogenesis;0.016453047423655!GO:0051539;4 iron, 4 sulfur cluster binding;0.0164975052496592!GO:0043068;positive regulation of programmed cell death;0.0165267217441771!GO:0042158;lipoprotein biosynthetic process;0.0165957911242531!GO:0031625;ubiquitin protein ligase binding;0.0166538758222576!GO:0005684;U2-dependent spliceosome;0.0166819109121518!GO:0030518;steroid hormone receptor signaling pathway;0.0167079364574658!GO:0008632;apoptotic program;0.0167086389552925!GO:0050811;GABA receptor binding;0.0167086389552925!GO:0006739;NADP metabolic process;0.017104393862!GO:0004004;ATP-dependent RNA helicase activity;0.0172490441541123!GO:0031529;ruffle organization and biogenesis;0.0173536944461204!GO:0003711;transcription elongation regulator activity;0.0173785075501496!GO:0009308;amine metabolic process;0.0173785075501496!GO:0051168;nuclear export;0.0175204002082571!GO:0006778;porphyrin metabolic process;0.0176556375780204!GO:0033013;tetrapyrrole metabolic process;0.0176556375780204!GO:0006749;glutathione metabolic process;0.0182394080323883!GO:0006401;RNA catabolic process;0.0187164849110281!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0191327266754492!GO:0005581;collagen;0.0194865221437314!GO:0000902;cell morphogenesis;0.0201355198745489!GO:0032989;cellular structure morphogenesis;0.0201355198745489!GO:0031901;early endosome membrane;0.0203584255021376!GO:0016860;intramolecular oxidoreductase activity;0.0203723639407633!GO:0048037;cofactor binding;0.0209014877291345!GO:0035035;histone acetyltransferase binding;0.0209680913154135!GO:0000059;protein import into nucleus, docking;0.0212843283415995!GO:0005862;muscle thin filament tropomyosin;0.0212843283415995!GO:0051059;NF-kappaB binding;0.0213507717162404!GO:0008652;amino acid biosynthetic process;0.0215900995456216!GO:0030503;regulation of cell redox homeostasis;0.0218699460097658!GO:0065007;biological regulation;0.0222381714597975!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0238365672355054!GO:0030032;lamellipodium biogenesis;0.0239044147229265!GO:0030199;collagen fibril organization;0.024694993079033!GO:0016251;general RNA polymerase II transcription factor activity;0.024739879502526!GO:0044433;cytoplasmic vesicle part;0.0250265066402585!GO:0019318;hexose metabolic process;0.0252195042835842!GO:0007041;lysosomal transport;0.0253419376357099!GO:0005996;monosaccharide metabolic process;0.0258218307380041!GO:0044437;vacuolar part;0.0259798751377635!GO:0005765;lysosomal membrane;0.0259798751377635!GO:0008147;structural constituent of bone;0.0259817778556444!GO:0009119;ribonucleoside metabolic process;0.0260912815631568!GO:0030384;phosphoinositide metabolic process;0.0273404052373043!GO:0005832;chaperonin-containing T-complex;0.0282411004973819!GO:0006892;post-Golgi vesicle-mediated transport;0.0286378847002418!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0304586219268041!GO:0000339;RNA cap binding;0.0306825205613101!GO:0015036;disulfide oxidoreductase activity;0.0314743372640396!GO:0001666;response to hypoxia;0.0318268722483162!GO:0042168;heme metabolic process;0.0319393878130326!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0322333203493957!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0323189451384172!GO:0004784;superoxide dismutase activity;0.0323189451384172!GO:0032984;macromolecular complex disassembly;0.0331873950183598!GO:0005595;collagen type XII;0.0332665442969984!GO:0007021;tubulin folding;0.0334453816634822!GO:0043492;ATPase activity, coupled to movement of substances;0.0336129146965814!GO:0016272;prefoldin complex;0.0342167724722915!GO:0006007;glucose catabolic process;0.0346778165369347!GO:0006289;nucleotide-excision repair;0.034932520550401!GO:0051235;maintenance of localization;0.034932520550401!GO:0016126;sterol biosynthetic process;0.0349947681238034!GO:0003684;damaged DNA binding;0.035300540141121!GO:0030508;thiol-disulfide exchange intermediate activity;0.0354417760635684!GO:0005801;cis-Golgi network;0.0359220935418186!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0361361966811385!GO:0005637;nuclear inner membrane;0.0361361966811385!GO:0006213;pyrimidine nucleoside metabolic process;0.0369464143918833!GO:0050681;androgen receptor binding;0.0369637661064501!GO:0008033;tRNA processing;0.0382138287754987!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0384187452412655!GO:0019838;growth factor binding;0.038641559940934!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0386697653464313!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0386697653464313!GO:0008629;induction of apoptosis by intracellular signals;0.0395487187319681!GO:0004364;glutathione transferase activity;0.0399939291059433!GO:0032507;maintenance of cellular protein localization;0.0399939291059433!GO:0006779;porphyrin biosynthetic process;0.0405740835861865!GO:0033014;tetrapyrrole biosynthetic process;0.0405740835861865!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0410528847304302!GO:0008637;apoptotic mitochondrial changes;0.0410727370460332!GO:0018202;peptidyl-histidine modification;0.0411234180235368!GO:0030100;regulation of endocytosis;0.0411234180235368!GO:0030832;regulation of actin filament length;0.0416060017764939!GO:0004448;isocitrate dehydrogenase activity;0.0416460729052916!GO:0009967;positive regulation of signal transduction;0.0428962918141286!GO:0006376;mRNA splice site selection;0.043187887759591!GO:0000389;nuclear mRNA 3'-splice site recognition;0.043187887759591!GO:0012506;vesicle membrane;0.0432236372065416!GO:0032535;regulation of cellular component size;0.0432331275292637!GO:0008430;selenium binding;0.0433130424479226!GO:0000279;M phase;0.0436241074810807!GO:0006693;prostaglandin metabolic process;0.0436241074810807!GO:0006692;prostanoid metabolic process;0.0436241074810807!GO:0045185;maintenance of protein localization;0.0437375551406295!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0437771245600152!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0438652828588046!GO:0006635;fatty acid beta-oxidation;0.0439206581116427!GO:0033673;negative regulation of kinase activity;0.0442300948270021!GO:0006469;negative regulation of protein kinase activity;0.0442300948270021!GO:0009303;rRNA transcription;0.044864997629047!GO:0006643;membrane lipid metabolic process;0.0464648064410942!GO:0008022;protein C-terminus binding;0.0467721719968656!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.04708015068915!GO:0043624;cellular protein complex disassembly;0.0477569133298751!GO:0030836;positive regulation of actin filament depolymerization;0.0482674919520653!GO:0032906;transforming growth factor-beta2 production;0.0485086307497301!GO:0032909;regulation of transforming growth factor-beta2 production;0.0485086307497301!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.04912501961108!GO:0043241;protein complex disassembly;0.0494566440159471!GO:0009225;nucleotide-sugar metabolic process;0.0495739443283487!GO:0030911;TPR domain binding;0.0499925023160181 | |||
|sample_id=11410 | |sample_id=11410 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=cartilage | |sample_tissue=cartilage | ||
|top_motifs=FOXL1:2.75262907716;ALX4:2.23686427758;EVI1:1.94309507435;UFEwm:1.9101897632;ESR1:1.78202739107;RXR{A,B,G}:1.74447030985;HES1:1.7094161879;NKX3-1:1.41499340748;NR6A1:1.31435174266;ZNF238:1.30859213839;MAFB:1.29418188935;TFCP2:1.27273165584;ATF6:1.25063574598;SMAD1..7,9:1.20091878196;MYBL2:1.19663159459;HIF1A:1.17189887281;GLI1..3:1.13382935789;ZNF423:1.12603467462;HOX{A4,D4}:1.10694401276;HMGA1,2:1.0856574349;PPARG:1.05282662764;GCM1,2:1.04619617622;TEF:1.01952508311;MTF1:0.989575362929;NFE2L1:0.970464813604;TEAD1:0.967049799547;PRDM1:0.928486005779;TFAP4:0.903187306214;GFI1B:0.887821949864;AIRE:0.886372737095;HSF1,2:0.882476195084;GTF2A1,2:0.877677600114;PAX1,9:0.86974231968;TAL1_TCF{3,4,12}:0.855244209243;ZIC1..3:0.846173259281;MTE{core}:0.82799836302;KLF4:0.817783421373;NR1H4:0.804135524747;NKX2-2,8:0.79237891237;ZNF384:0.748046175389;NKX2-1,4:0.73139465193;TBP:0.727672921311;SPZ1:0.726972262325;HMX1:0.724133254482;GZF1:0.707539810831;HOX{A6,A7,B6,B7}:0.68095073575;XBP1:0.680906059333;IKZF1:0.676669061033;HIC1:0.657089846501;NR3C1:0.619293646671;TFAP2{A,C}:0.617618252456;GTF2I:0.60157614134;EBF1:0.599033589275;RREB1:0.59308319289;TFAP2B:0.590427732477;EN1,2:0.585531133382;TLX1..3_NFIC{dimer}:0.56539101956;BPTF:0.549646261968;NFATC1..3:0.515288640362;RXRA_VDR{dimer}:0.50924561629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499508715599;MAZ:0.466970474088;ZBTB6:0.458537349587;XCPE1{core}:0.449235212832;PATZ1:0.419664543591;FOXD3:0.415069758376;STAT2,4,6:0.40721794778;NANOG{mouse}:0.405672438887;GATA4:0.404093769062;POU6F1:0.402572426788;HOX{A5,B5}:0.381231690666;PAX5:0.376883415646;HAND1,2:0.36120003597;TOPORS:0.36011116325;POU1F1:0.351372127357;YY1:0.295824510984;CDC5L:0.271233809433;POU5F1:0.246622740227;SOX5:0.246544444109;ESRRA:0.23259107218;ZNF148:0.231968642134;EP300:0.198491059117;HLF:0.19550561273;LHX3,4:0.189531835568;SRF:0.160683877897;MYFfamily:0.128798524631;MZF1:0.100788226528;TP53:0.0560785251799;REST:0.0531742498315;IRF1,2:0.0364280958858;NHLH1,2:0.033720471109;MYB:0.0285504857857;PAX4:0.0256853963587;NKX6-1,2:0.0104679975274;NFE2L2:0.00782671362951;AHR_ARNT_ARNT2:0.004384998201;ARID5B:0.00205704154509;VSX1,2:-0.0113009739217;STAT5{A,B}:-0.0310482006653;FOXO1,3,4:-0.0500661876804;SP1:-0.0630993360799;EGR1..3:-0.0739318171782;AR:-0.0785091015438;FOXP3:-0.101529315164;HNF1A:-0.109344440922;MED-1{core}:-0.118369160265;MEF2{A,B,C,D}:-0.128023570568;TBX4,5:-0.166522259144;RFX1:-0.179190763384;NR5A1,2:-0.180496727715;CEBPA,B_DDIT3:-0.18438631368;DMAP1_NCOR{1,2}_SMARC:-0.184949589285;BACH2:-0.197431797412;NKX3-2:-0.204170958538;FOX{I1,J2}:-0.207953319209;PAX6:-0.210546047841;CREB1:-0.222830810199;LMO2:-0.244575563174;PRRX1,2:-0.245031230423;FOS_FOS{B,L1}_JUN{B,D}:-0.252279888867;HBP1_HMGB_SSRP1_UBTF:-0.254602000638;STAT1,3:-0.284677480457;CDX1,2,4:-0.286070286295;TFDP1:-0.290640303961;FOXM1:-0.316173035938;ZBTB16:-0.328264994395;ONECUT1,2:-0.349162323453;FOXP1:-0.364716231883;FOX{D1,D2}:-0.37992685958;bHLH_family:-0.38540693172;NKX2-3_NKX2-5:-0.401333510163;HNF4A_NR2F1,2:-0.409338330805;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420778177812;ZFP161:-0.422561676127;ELK1,4_GABP{A,B1}:-0.440212118888;ZNF143:-0.459485022243;NRF1:-0.461839382698;NFKB1_REL_RELA:-0.466851617843;NFE2:-0.466876492192;NFIX:-0.470381939427;PDX1:-0.479425966067;IKZF2:-0.489446310891;RUNX1..3:-0.49234401963;ATF4:-0.503931663951;NFIL3:-0.504812973296;ATF5_CREB3:-0.516382441011;FOSL2:-0.520364749738;SREBF1,2:-0.52250338841;BREu{core}:-0.542617147746;FOXA2:-0.562437525715;DBP:-0.581184723528;ATF2:-0.58547850306;SNAI1..3:-0.585815304582;LEF1_TCF7_TCF7L1,2:-0.591155892713;ADNP_IRX_SIX_ZHX:-0.596567840901;GFI1:-0.655335342819;E2F1..5:-0.665022864612;RFX2..5_RFXANK_RFXAP:-0.675481375069;FOX{F1,F2,J1}:-0.693026004556;HOXA9_MEIS1:-0.695848062462;SOX17:-0.704468632555;PAX3,7:-0.725917412617;JUN:-0.753666257778;IRF7:-0.769296119879;RBPJ:-0.7878629905;ETS1,2:-0.804418690395;SPI1:-0.839351889042;SPIB:-0.867882686479;PITX1..3:-0.886120356443;FOXN1:-0.904417707126;PAX8:-0.918909131802;ZEB1:-0.950734512729;ELF1,2,4:-0.968940987021;SOX2:-0.976725568823;T:-0.999572189398;POU3F1..4:-1.01737478427;FOXQ1:-1.10531938743;TLX2:-1.13253638956;CRX:-1.14716054917;PBX1:-1.20234675415;NFY{A,B,C}:-1.2116720638;PAX2:-1.22336618771;TGIF1:-1.22596969745;CUX2:-1.24843525417;GATA6:-1.46959036159;POU2F1..3:-1.47482966665;OCT4_SOX2{dimer}:-1.47683979413;ALX1:-1.52669045229;RORA:-1.53064129762;MYOD1:-1.5456326901;SOX{8,9,10}:-1.66229448934;NANOG:-1.72086660471 | |top_motifs=FOXL1:2.75262907716;ALX4:2.23686427758;EVI1:1.94309507435;UFEwm:1.9101897632;ESR1:1.78202739107;RXR{A,B,G}:1.74447030985;HES1:1.7094161879;NKX3-1:1.41499340748;NR6A1:1.31435174266;ZNF238:1.30859213839;MAFB:1.29418188935;TFCP2:1.27273165584;ATF6:1.25063574598;SMAD1..7,9:1.20091878196;MYBL2:1.19663159459;HIF1A:1.17189887281;GLI1..3:1.13382935789;ZNF423:1.12603467462;HOX{A4,D4}:1.10694401276;HMGA1,2:1.0856574349;PPARG:1.05282662764;GCM1,2:1.04619617622;TEF:1.01952508311;MTF1:0.989575362929;NFE2L1:0.970464813604;TEAD1:0.967049799547;PRDM1:0.928486005779;TFAP4:0.903187306214;GFI1B:0.887821949864;AIRE:0.886372737095;HSF1,2:0.882476195084;GTF2A1,2:0.877677600114;PAX1,9:0.86974231968;TAL1_TCF{3,4,12}:0.855244209243;ZIC1..3:0.846173259281;MTE{core}:0.82799836302;KLF4:0.817783421373;NR1H4:0.804135524747;NKX2-2,8:0.79237891237;ZNF384:0.748046175389;NKX2-1,4:0.73139465193;TBP:0.727672921311;SPZ1:0.726972262325;HMX1:0.724133254482;GZF1:0.707539810831;HOX{A6,A7,B6,B7}:0.68095073575;XBP1:0.680906059333;IKZF1:0.676669061033;HIC1:0.657089846501;NR3C1:0.619293646671;TFAP2{A,C}:0.617618252456;GTF2I:0.60157614134;EBF1:0.599033589275;RREB1:0.59308319289;TFAP2B:0.590427732477;EN1,2:0.585531133382;TLX1..3_NFIC{dimer}:0.56539101956;BPTF:0.549646261968;NFATC1..3:0.515288640362;RXRA_VDR{dimer}:0.50924561629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499508715599;MAZ:0.466970474088;ZBTB6:0.458537349587;XCPE1{core}:0.449235212832;PATZ1:0.419664543591;FOXD3:0.415069758376;STAT2,4,6:0.40721794778;NANOG{mouse}:0.405672438887;GATA4:0.404093769062;POU6F1:0.402572426788;HOX{A5,B5}:0.381231690666;PAX5:0.376883415646;HAND1,2:0.36120003597;TOPORS:0.36011116325;POU1F1:0.351372127357;YY1:0.295824510984;CDC5L:0.271233809433;POU5F1:0.246622740227;SOX5:0.246544444109;ESRRA:0.23259107218;ZNF148:0.231968642134;EP300:0.198491059117;HLF:0.19550561273;LHX3,4:0.189531835568;SRF:0.160683877897;MYFfamily:0.128798524631;MZF1:0.100788226528;TP53:0.0560785251799;REST:0.0531742498315;IRF1,2:0.0364280958858;NHLH1,2:0.033720471109;MYB:0.0285504857857;PAX4:0.0256853963587;NKX6-1,2:0.0104679975274;NFE2L2:0.00782671362951;AHR_ARNT_ARNT2:0.004384998201;ARID5B:0.00205704154509;VSX1,2:-0.0113009739217;STAT5{A,B}:-0.0310482006653;FOXO1,3,4:-0.0500661876804;SP1:-0.0630993360799;EGR1..3:-0.0739318171782;AR:-0.0785091015438;FOXP3:-0.101529315164;HNF1A:-0.109344440922;MED-1{core}:-0.118369160265;MEF2{A,B,C,D}:-0.128023570568;TBX4,5:-0.166522259144;RFX1:-0.179190763384;NR5A1,2:-0.180496727715;CEBPA,B_DDIT3:-0.18438631368;DMAP1_NCOR{1,2}_SMARC:-0.184949589285;BACH2:-0.197431797412;NKX3-2:-0.204170958538;FOX{I1,J2}:-0.207953319209;PAX6:-0.210546047841;CREB1:-0.222830810199;LMO2:-0.244575563174;PRRX1,2:-0.245031230423;FOS_FOS{B,L1}_JUN{B,D}:-0.252279888867;HBP1_HMGB_SSRP1_UBTF:-0.254602000638;STAT1,3:-0.284677480457;CDX1,2,4:-0.286070286295;TFDP1:-0.290640303961;FOXM1:-0.316173035938;ZBTB16:-0.328264994395;ONECUT1,2:-0.349162323453;FOXP1:-0.364716231883;FOX{D1,D2}:-0.37992685958;bHLH_family:-0.38540693172;NKX2-3_NKX2-5:-0.401333510163;HNF4A_NR2F1,2:-0.409338330805;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420778177812;ZFP161:-0.422561676127;ELK1,4_GABP{A,B1}:-0.440212118888;ZNF143:-0.459485022243;NRF1:-0.461839382698;NFKB1_REL_RELA:-0.466851617843;NFE2:-0.466876492192;NFIX:-0.470381939427;PDX1:-0.479425966067;IKZF2:-0.489446310891;RUNX1..3:-0.49234401963;ATF4:-0.503931663951;NFIL3:-0.504812973296;ATF5_CREB3:-0.516382441011;FOSL2:-0.520364749738;SREBF1,2:-0.52250338841;BREu{core}:-0.542617147746;FOXA2:-0.562437525715;DBP:-0.581184723528;ATF2:-0.58547850306;SNAI1..3:-0.585815304582;LEF1_TCF7_TCF7L1,2:-0.591155892713;ADNP_IRX_SIX_ZHX:-0.596567840901;GFI1:-0.655335342819;E2F1..5:-0.665022864612;RFX2..5_RFXANK_RFXAP:-0.675481375069;FOX{F1,F2,J1}:-0.693026004556;HOXA9_MEIS1:-0.695848062462;SOX17:-0.704468632555;PAX3,7:-0.725917412617;JUN:-0.753666257778;IRF7:-0.769296119879;RBPJ:-0.7878629905;ETS1,2:-0.804418690395;SPI1:-0.839351889042;SPIB:-0.867882686479;PITX1..3:-0.886120356443;FOXN1:-0.904417707126;PAX8:-0.918909131802;ZEB1:-0.950734512729;ELF1,2,4:-0.968940987021;SOX2:-0.976725568823;T:-0.999572189398;POU3F1..4:-1.01737478427;FOXQ1:-1.10531938743;TLX2:-1.13253638956;CRX:-1.14716054917;PBX1:-1.20234675415;NFY{A,B,C}:-1.2116720638;PAX2:-1.22336618771;TGIF1:-1.22596969745;CUX2:-1.24843525417;GATA6:-1.46959036159;POU2F1..3:-1.47482966665;OCT4_SOX2{dimer}:-1.47683979413;ALX1:-1.52669045229;RORA:-1.53064129762;MYOD1:-1.5456326901;SOX{8,9,10}:-1.66229448934;NANOG:-1.72086660471 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11410-118E6;search_select_hide=table117:FF:11410-118E6 | |||
}} | }} | ||
Latest revision as of 17:59, 4 June 2020
| Name: | Chondrocyte - de diff, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12020 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12020
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12020
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.703 |
| 10 | 10 | 0.564 |
| 100 | 100 | 0.949 |
| 101 | 101 | 0.22 |
| 102 | 102 | 0.123 |
| 103 | 103 | 0.689 |
| 104 | 104 | 0.891 |
| 105 | 105 | 0.0224 |
| 106 | 106 | 0.564 |
| 107 | 107 | 0.0461 |
| 108 | 108 | 0.157 |
| 109 | 109 | 0.602 |
| 11 | 11 | 0.775 |
| 110 | 110 | 0.995 |
| 111 | 111 | 0.692 |
| 112 | 112 | 0.99 |
| 113 | 113 | 0.781 |
| 114 | 114 | 0.278 |
| 115 | 115 | 0.00101 |
| 116 | 116 | 0.0111 |
| 117 | 117 | 0.346 |
| 118 | 118 | 0.734 |
| 119 | 119 | 0.474 |
| 12 | 12 | 0.147 |
| 120 | 120 | 0.662 |
| 121 | 121 | 0.266 |
| 122 | 122 | 0.0441 |
| 123 | 123 | 0.0376 |
| 124 | 124 | 0.0908 |
| 125 | 125 | 0.616 |
| 126 | 126 | 0.657 |
| 127 | 127 | 0.706 |
| 128 | 128 | 0.412 |
| 129 | 129 | 0.315 |
| 13 | 13 | 0.844 |
| 130 | 130 | 0.314 |
| 131 | 131 | 0.518 |
| 132 | 132 | 0.0229 |
| 133 | 133 | 0.588 |
| 134 | 134 | 0.329 |
| 135 | 135 | 0.695 |
| 136 | 136 | 0.368 |
| 137 | 137 | 0.278 |
| 138 | 138 | 0.501 |
| 139 | 139 | 0.19 |
| 14 | 14 | 0.341 |
| 140 | 140 | 0.348 |
| 141 | 141 | 0.313 |
| 142 | 142 | 0.617 |
| 143 | 143 | 0.645 |
| 144 | 144 | 0.331 |
| 145 | 145 | 0.806 |
| 146 | 146 | 0.0972 |
| 147 | 147 | 0.468 |
| 148 | 148 | 0.423 |
| 149 | 149 | 0.0075 |
| 15 | 15 | 0.51 |
| 150 | 150 | 0.485 |
| 151 | 151 | 0.797 |
| 152 | 152 | 0.0117 |
| 153 | 153 | 0.656 |
| 154 | 154 | 0.575 |
| 155 | 155 | 0.729 |
| 156 | 156 | 0.691 |
| 157 | 157 | 0.59 |
| 158 | 158 | 0.0378 |
| 159 | 159 | 0.899 |
| 16 | 16 | 0.0824 |
| 160 | 160 | 0.658 |
| 161 | 161 | 0.581 |
| 162 | 162 | 0.479 |
| 163 | 163 | 0.841 |
| 164 | 164 | 0.0386 |
| 165 | 165 | 0.426 |
| 166 | 166 | 0.00839 |
| 167 | 167 | 0.691 |
| 168 | 168 | 0.463 |
| 169 | 169 | 0.0228 |
| 17 | 17 | 0.807 |
| 18 | 18 | 0.707 |
| 19 | 19 | 0.00427 |
| 2 | 2 | 0.303 |
| 20 | 20 | 0.631 |
| 21 | 21 | 0.0366 |
| 22 | 22 | 0.16 |
| 23 | 23 | 0.531 |
| 24 | 24 | 0.0801 |
| 25 | 25 | 0.396 |
| 26 | 26 | 0.895 |
| 27 | 27 | 0.651 |
| 28 | 28 | 0.116 |
| 29 | 29 | 0.17 |
| 3 | 3 | 0.755 |
| 30 | 30 | 0.609 |
| 31 | 31 | 0.636 |
| 32 | 32 | 4.03407e-14 |
| 33 | 33 | 0.706 |
| 34 | 34 | 0.539 |
| 35 | 35 | 0.722 |
| 36 | 36 | 0.0143 |
| 37 | 37 | 0.262 |
| 38 | 38 | 0.636 |
| 39 | 39 | 0.496 |
| 4 | 4 | 0.515 |
| 40 | 40 | 0.13 |
| 41 | 41 | 0.199 |
| 42 | 42 | 0.658 |
| 43 | 43 | 0.906 |
| 44 | 44 | 0.189 |
| 45 | 45 | 0.76 |
| 46 | 46 | 0.725 |
| 47 | 47 | 0.329 |
| 48 | 48 | 0.856 |
| 49 | 49 | 0.554 |
| 5 | 5 | 0.927 |
| 50 | 50 | 0.568 |
| 51 | 51 | 0.807 |
| 52 | 52 | 0.86 |
| 53 | 53 | 0.0965 |
| 54 | 54 | 0.753 |
| 55 | 55 | 0.752 |
| 56 | 56 | 0.995 |
| 57 | 57 | 0.927 |
| 58 | 58 | 0.242 |
| 59 | 59 | 0.0549 |
| 6 | 6 | 0.308 |
| 60 | 60 | 0.747 |
| 61 | 61 | 0.434 |
| 62 | 62 | 0.613 |
| 63 | 63 | 0.321 |
| 64 | 64 | 0.482 |
| 65 | 65 | 0.403 |
| 66 | 66 | 0.0418 |
| 67 | 67 | 0.997 |
| 68 | 68 | 0.569 |
| 69 | 69 | 0.281 |
| 7 | 7 | 0.379 |
| 70 | 70 | 0.223 |
| 71 | 71 | 0.861 |
| 72 | 72 | 0.406 |
| 73 | 73 | 0.00421 |
| 74 | 74 | 0.277 |
| 75 | 75 | 0.68 |
| 76 | 76 | 0.33 |
| 77 | 77 | 6.89005e-4 |
| 78 | 78 | 0.104 |
| 79 | 79 | 9.56579e-4 |
| 8 | 8 | 0.164 |
| 80 | 80 | 0.0136 |
| 81 | 81 | 0.656 |
| 82 | 82 | 0.16 |
| 83 | 83 | 0.597 |
| 84 | 84 | 0.606 |
| 85 | 85 | 0.126 |
| 86 | 86 | 0.895 |
| 87 | 87 | 0.924 |
| 88 | 88 | 0.207 |
| 89 | 89 | 0.0731 |
| 9 | 9 | 0.816 |
| 90 | 90 | 0.228 |
| 91 | 91 | 0.742 |
| 92 | 92 | 0.577 |
| 93 | 93 | 0.831 |
| 94 | 94 | 0.848 |
| 95 | 95 | 0.479 |
| 96 | 96 | 0.897 |
| 97 | 97 | 0.67 |
| 98 | 98 | 0.845 |
| 99 | 99 | 0.0248 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12020
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000246 human chondrocyte de-differentiated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000246 (human chondrocyte de-differentiated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
