FF:11429-118G7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004752 | ||
|accession_numbers=CAGE;DRX008418;DRR009290;DRZ000715;DRZ002100 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004752 | ||
|accession_numbers=CAGE;DRX008418;DRR009290;DRZ000715;DRZ002100;DRZ012065;DRZ013450 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037209;DRR041575;DRZ007217 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.58!41.49!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.83!FOXQ1;;chr11:65686802..65686818,+!p6@DRAP1!1.46!47.88!DRAP1;;chr1:170633348..170633399,+!p2@PRRX1!1.43!34.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.41!28.01!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.06!ZBED1;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.36!HIC1;;chr9:132427883..132427951,+!p2@PRRX2!1.34!21.03!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.33!26.26!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.32!53.81!OSR1;;chr8:25902876..25902936,-!p1@EBF2!1.31!19.29!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.29!31.14!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.41!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.26!17.32!HOXC5;;chr10:131762504..131762555,-!p1@EBF3!1.24!16.39!EBF3;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.45!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.20!434.39!HMGA1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.57!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.17!43.00!TBX2;;chr11:65687222..65687240,+!p7@DRAP1!1.15!16.97!DRAP1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.20!IRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.85!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.09!52.18!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.45!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.25!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.06!33.82!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.06!18.01!TWIST2;;chr1:170632723..170632739,+!p8@PRRX1!1.05!10.23!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.04!9.99!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.03!9.76!HAND2;;chr19:47523058..47523114,+!p1@NPAS1!1.03!9.65!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!1.03!9.65!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!1.00!58.34!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.57!CREB3L1;;chr10:119303078..119303169,+!p2@EMX2!1.00!8.95!EMX2;;chr17:46675420..46675465,-!p3@HOXB6!0.96!9.53!HOXB6;;chr12:54393880..54393962,+!p1@HOXC9!0.96!8.02!HOXC9;;chr5:133450365..133450444,+!p1@TCF7!0.95!37.19!TCF7;;chr7:27205136..27205164,-!p1@HOXA9!0.94!7.79!HOXA9;;chr2:102091144..102091183,-!p2@RFX8!0.94!7.67!RFX8;;chr17:46622070..46622109,-!p1@HOXB2!0.93!17.20!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.32!HAND2;;chr12:66218183..66218209,+!p4@HMGA2!0.91!13.95!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.09!HOXB6;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.25!DRAP1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!6.97!HOXA9;;chr12:66218836..66218888,+!p1@HMGA2!0.89!67.17!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr12:54380036..54380091,+!p4@HOXC10!0.88!6.62!HOXC10;;chr4:111544219..111544240,-!p1@PITX2!0.88!6.62!PITX2;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.88!SNAI2;;chr11:65687243..65687276,+!p8@DRAP1!0.87!8.95!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.98!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.62!TWIST1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr4:26322267..26322334,+!p3@RBPJ!0.85!15.46!RBPJ;;chr2:176994408..176994492,+!p1@HOXD8!0.85!6.16!HOXD8;;chr16:86600426..86600441,+!p1@FOXC2!0.84!15.34!FOXC2;;chr1:170633194..170633205,+!p18@PRRX1!0.84!5.93!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.83!19.41!AHRR;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.37!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.90!FOXF2;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.67!HOXB7;;chr20:42543506..42543549,+!p2@TOX2!0.80!13.48!TOX2;;chr15:96874145..96874166,+!p7@NR2F2!0.80!10.69!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.02!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.80!5.35!PITX2;;chr15:96873984..96873999,+!p3@NR2F2!0.79!41.25!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.79!6.28!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.78!28.24!CREB3L1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.47!ETV1;;chr12:54394309..54394336,+!p2@HOXC9!0.77!4.88!HOXC9;;chr12:54422217..54422239,+!p3@HOXC6!0.77!4.88!HOXC6;;chr17:46682321..46682362,-!p1@HOXB6!0.77!4.88!HOXB6;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.18!POU2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.76!7.67!HOXB2;;chr1:170632762..170632786,+!p13@PRRX1!0.76!4.76!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!0.76!4.76!TBX3;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.76!HOXC10;;chr8:49833978..49833996,-!p1@SNAI2!0.75!105.75!SNAI2;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.58!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!0.75!4.65!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!0.74!5.69!FOXF1;;chr19:54041669..54041697,+!p2@ZNF331!0.74!4.53!ZNF331;;chr1:170632439..170632465,+!p11@PRRX1!0.74!4.53!PRRX1;;chr17:46690839..46690884,-!p1@HOXB8!0.73!4.42!HOXB8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.73!4.42!HOXC5;;chr7:44143925..44143970,+!p1@AEBP1!0.72!106.80!AEBP1;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.30!HOXC8;;chr1:170632137..170632172,+!p10@PRRX1!0.72!4.30!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.71!42.42!NR2F2;;chr1:170632683..170632696,+!p12@PRRX1!0.71!4.18!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.70!23.94!RARG;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.04!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.58!TBX2;;chr1:170633245..170633256,+!p14@PRRX1!0.70!4.07!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.69!3.95!RFX8;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.15!FOXM1;;chr2:119604456..119604501,-!p2@EN1!0.68!3.83!EN1;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.62!EGR1;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.72!IRX1;;chr6:31126291..31126399,+!p1@TCF19!0.66!39.05!TCF19;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.65!NR2F2;;chr19:13134772..13134822,+!p2@NFIX!0.66!5.58!NFIX;;chr10:131762410..131762436,-!p2@EBF3!0.66!3.60!EBF3;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.13!FOXD1;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.81!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.58!ZBTB38;;chr5:3595934..3595957,+!p2@IRX1!0.64!3.37!IRX1;;chr12:66218420..66218439,+!p12@HMGA2!0.64!3.37!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.64!3.37!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.63!9.18!PPARG;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.25!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.63!6.16!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.83!BNC1;;chr16:86612320..86612394,+!p1@FOXL1!0.63!3.25!FOXL1;;chr19:54058073..54058088,+!p1@ZNF331!0.63!3.25!ZNF331;;chr12:66218923..66218934,+!p14@HMGA2!0.63!3.25!HMGA2;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.25!HOXA5;;chr9:1050331..1050363,+!p1@DMRT2!0.63!3.25!DMRT2;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.39!NR2F2;;chr21:36260773..36260804,-!p7@RUNX1!0.62!4.53!RUNX1;;chr3:12330560..12330579,+!p1@PPARG!0.62!3.72!PPARG;;chr7:14028488..14028516,-!p2@ETV1!0.62!3.60!ETV1;;chr17:46621146..46621180,-!p10@HOXB2!0.62!3.14!HOXB2;;chr12:115121962..115121987,-!p1@TBX3!0.61!30.56!TBX3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.09!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.61!4.42!HOXB2;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.63!IFI16;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.11!MSX1;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.00!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.60!3.02!SMAD3;;chr17:46691732..46691766,-!p4@HOXB8!0.60!3.02!HOXB8;;chr10:119302645..119302712,+!p3@EMX2!0.60!3.02!EMX2;;chr12:54394059..54394088,+!p3@HOXC9!0.60!3.02!HOXC9;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!9.06!ARNTL2;;chr5:158526917..158526932,-!p1@EBF1!0.59!8.25!EBF1;;chr10:131762385..131762398,-!p4@EBF3!0.59!2.91!EBF3;;chr7:44143978..44143989,+!p2@AEBP1!0.58!5.81!AEBP1;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.07!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.58!3.83!NFATC2;;chr1:170632310..170632321,+!p15@PRRX1!0.58!2.79!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.58!2.79!KLF17;;chr3:21792682..21792720,-!p1@ZNF385D!0.58!2.79!ZNF385D;;chr12:52445218..52445237,+!p1@NR4A1!0.57!43.00!NR4A1;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr2:102091478..102091490,-!p3@RFX8!0.57!2.67!RFX8;;chr16:86600458..86600461,+!p3@FOXC2!0.57!2.67!FOXC2;;chr12:115122303..115122314,-!p6@TBX3!0.57!2.67!TBX3;;chr5:2751785..2751808,-!p2@IRX2!0.57!2.67!IRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.56!87.62!FOSL1;;chr1:8934931..8934947,-!p4@ENO1!0.56!10.23!ENO1;;chr8:22550982..22550999,-!p1@EGR3!0.56!8.83!EGR3;;chr19:31840313..31840380,-!p1@TSHZ3!0.56!7.79!TSHZ3;;chr6:34204973..34204990,+!p4@HMGA1!0.55!42.65!HMGA1;;chr3:71007344..71007348,-!p6@FOXP1!0.55!12.43!FOXP1;;chr12:66218443..66218461,+!p8@HMGA2!0.55!3.49!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.18!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.54!2.44!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.54!2.44!TCF12;;chr19:31840168..31840186,-!p6@TSHZ3!0.54!2.44!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.44!PRRX1;;chr2:169312600..169312606,+!p2@CERS6!0.53!4.18!CERS6;;chr1:8926369..8926385,-!p12@ENO1!0.53!3.49!ENO1;;chr15:96881221..96881240,+!p19@NR2F2!0.53!3.37!NR2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.53!3.25!AEBP1;;chr15:96873921..96873946,+!p1@NR2F2!0.52!85.18!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.55!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.52!3.83!HOXB4;;chr16:86601052..86601066,+!p4@FOXC2!0.52!2.32!FOXC2;;chr7:15726243..15726293,-!p2@MEOX2!0.52!2.32!MEOX2;;chr12:54380112..54380126,+!p5@HOXC10!0.52!2.32!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.52!2.32!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.52!2.32!HOXC5;;chr12:85673977..85674015,+!p1@ALX1!0.52!2.32!ALX1;;chr11:65686855..65686946,+!p1@DRAP1!0.51!222.19!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.51!7.09!ZFPM2;;chr1:221052776..221052799,+!p1@HLX!0.51!4.65!HLX;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.60!NR2F2;;chr17:46622205..46622218,-!p3@HOXB2!0.51!2.67!HOXB2;;chr9:1051481..1051496,+!p3@DMRT2!0.51!2.21!DMRT2;;chr11:46299443..46299459,+!p4@CREB3L1!0.51!2.21!CREB3L1;;chr12:66218469..66218477,+!p16@HMGA2!0.51!2.21!HMGA2;;chr7:137686763..137686784,-!p5@CREB3L2!0.50!4.30!CREB3L2;;chr19:45260775..45260838,+!p5@BCL3!0.50!3.02!BCL3;;chr6:144329384..144329405,-!p1@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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.58!41.49!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.83!FOXQ1;;chr11:65686802..65686818,+!p6@DRAP1!1.46!47.88!DRAP1;;chr1:170633348..170633399,+!p2@PRRX1!1.43!34.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.41!28.01!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.06!ZBED1;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.36!HIC1;;chr9:132427883..132427951,+!p2@PRRX2!1.34!21.03!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.33!26.26!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.32!53.81!OSR1;;chr8:25902876..25902936,-!p1@EBF2!1.31!19.29!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.29!31.14!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.41!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.26!17.32!HOXC5;;chr10:131762504..131762555,-!p1@EBF3!1.24!16.39!EBF3;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.45!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.20!434.39!HMGA1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.57!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.17!43.00!TBX2;;chr11:65687222..65687240,+!p7@DRAP1!1.15!16.97!DRAP1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.20!IRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.85!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.09!52.18!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.45!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.25!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.06!33.82!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.06!18.01!TWIST2;;chr1:170632723..170632739,+!p8@PRRX1!1.05!10.23!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.04!9.99!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.03!9.76!HAND2;;chr19:47523058..47523114,+!p1@NPAS1!1.03!9.65!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!1.03!9.65!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!1.00!58.34!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.57!CREB3L1;;chr10:119303078..119303169,+!p2@EMX2!1.00!8.95!EMX2;;chr17:46675420..46675465,-!p3@HOXB6!0.96!9.53!HOXB6;;chr12:54393880..54393962,+!p1@HOXC9!0.96!8.02!HOXC9;;chr5:133450365..133450444,+!p1@TCF7!0.95!37.19!TCF7;;chr7:27205136..27205164,-!p1@HOXA9!0.94!7.79!HOXA9;;chr2:102091144..102091183,-!p2@RFX8!0.94!7.67!RFX8;;chr17:46622070..46622109,-!p1@HOXB2!0.93!17.20!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.32!HAND2;;chr12:66218183..66218209,+!p4@HMGA2!0.91!13.95!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.09!HOXB6;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.25!DRAP1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!6.97!HOXA9;;chr12:66218836..66218888,+!p1@HMGA2!0.89!67.17!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr12:54380036..54380091,+!p4@HOXC10!0.88!6.62!HOXC10;;chr4:111544219..111544240,-!p1@PITX2!0.88!6.62!PITX2;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.88!SNAI2;;chr11:65687243..65687276,+!p8@DRAP1!0.87!8.95!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.98!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.62!TWIST1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr4:26322267..26322334,+!p3@RBPJ!0.85!15.46!RBPJ;;chr2:176994408..176994492,+!p1@HOXD8!0.85!6.16!HOXD8;;chr16:86600426..86600441,+!p1@FOXC2!0.84!15.34!FOXC2;;chr1:170633194..170633205,+!p18@PRRX1!0.84!5.93!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.83!19.41!AHRR;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.37!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.90!FOXF2;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.67!HOXB7;;chr20:42543506..42543549,+!p2@TOX2!0.80!13.48!TOX2;;chr15:96874145..96874166,+!p7@NR2F2!0.80!10.69!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.02!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.80!5.35!PITX2;;chr15:96873984..96873999,+!p3@NR2F2!0.79!41.25!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.79!6.28!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.78!28.24!CREB3L1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.47!ETV1;;chr12:54394309..54394336,+!p2@HOXC9!0.77!4.88!HOXC9;;chr12:54422217..54422239,+!p3@HOXC6!0.77!4.88!HOXC6;;chr17:46682321..46682362,-!p1@HOXB6!0.77!4.88!HOXB6;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.18!POU2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.76!7.67!HOXB2;;chr1:170632762..170632786,+!p13@PRRX1!0.76!4.76!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!0.76!4.76!TBX3;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.76!HOXC10;;chr8:49833978..49833996,-!p1@SNAI2!0.75!105.75!SNAI2;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.58!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!0.75!4.65!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!0.74!5.69!FOXF1;;chr19:54041669..54041697,+!p2@ZNF331!0.74!4.53!ZNF331;;chr1:170632439..170632465,+!p11@PRRX1!0.74!4.53!PRRX1;;chr17:46690839..46690884,-!p1@HOXB8!0.73!4.42!HOXB8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.73!4.42!HOXC5;;chr7:44143925..44143970,+!p1@AEBP1!0.72!106.80!AEBP1;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.30!HOXC8;;chr1:170632137..170632172,+!p10@PRRX1!0.72!4.30!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.71!42.42!NR2F2;;chr1:170632683..170632696,+!p12@PRRX1!0.71!4.18!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.70!23.94!RARG;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.04!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.58!TBX2;;chr1:170633245..170633256,+!p14@PRRX1!0.70!4.07!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.69!3.95!RFX8;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.15!FOXM1;;chr2:119604456..119604501,-!p2@EN1!0.68!3.83!EN1;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.62!EGR1;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.72!IRX1;;chr6:31126291..31126399,+!p1@TCF19!0.66!39.05!TCF19;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.65!NR2F2;;chr19:13134772..13134822,+!p2@NFIX!0.66!5.58!NFIX;;chr10:131762410..131762436,-!p2@EBF3!0.66!3.60!EBF3;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.13!FOXD1;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.81!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.58!ZBTB38;;chr5:3595934..3595957,+!p2@IRX1!0.64!3.37!IRX1;;chr12:66218420..66218439,+!p12@HMGA2!0.64!3.37!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.64!3.37!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.63!9.18!PPARG;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.25!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.63!6.16!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.83!BNC1;;chr16:86612320..86612394,+!p1@FOXL1!0.63!3.25!FOXL1;;chr19:54058073..54058088,+!p1@ZNF331!0.63!3.25!ZNF331;;chr12:66218923..66218934,+!p14@HMGA2!0.63!3.25!HMGA2;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.25!HOXA5;;chr9:1050331..1050363,+!p1@DMRT2!0.63!3.25!DMRT2;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.39!NR2F2;;chr21:36260773..36260804,-!p7@RUNX1!0.62!4.53!RUNX1;;chr3:12330560..12330579,+!p1@PPARG!0.62!3.72!PPARG;;chr7:14028488..14028516,-!p2@ETV1!0.62!3.60!ETV1;;chr17:46621146..46621180,-!p10@HOXB2!0.62!3.14!HOXB2;;chr12:115121962..115121987,-!p1@TBX3!0.61!30.56!TBX3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.09!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.61!4.42!HOXB2;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.63!IFI16;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.11!MSX1;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.00!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.60!3.02!SMAD3;;chr17:46691732..46691766,-!p4@HOXB8!0.60!3.02!HOXB8;;chr10:119302645..119302712,+!p3@EMX2!0.60!3.02!EMX2;;chr12:54394059..54394088,+!p3@HOXC9!0.60!3.02!HOXC9;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!9.06!ARNTL2;;chr5:158526917..158526932,-!p1@EBF1!0.59!8.25!EBF1;;chr10:131762385..131762398,-!p4@EBF3!0.59!2.91!EBF3;;chr7:44143978..44143989,+!p2@AEBP1!0.58!5.81!AEBP1;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.07!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.58!3.83!NFATC2;;chr1:170632310..170632321,+!p15@PRRX1!0.58!2.79!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.58!2.79!KLF17;;chr3:21792682..21792720,-!p1@ZNF385D!0.58!2.79!ZNF385D;;chr12:52445218..52445237,+!p1@NR4A1!0.57!43.00!NR4A1;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr2:102091478..102091490,-!p3@RFX8!0.57!2.67!RFX8;;chr16:86600458..86600461,+!p3@FOXC2!0.57!2.67!FOXC2;;chr12:115122303..115122314,-!p6@TBX3!0.57!2.67!TBX3;;chr5:2751785..2751808,-!p2@IRX2!0.57!2.67!IRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.56!87.62!FOSL1;;chr1:8934931..8934947,-!p4@ENO1!0.56!10.23!ENO1;;chr8:22550982..22550999,-!p1@EGR3!0.56!8.83!EGR3;;chr19:31840313..31840380,-!p1@TSHZ3!0.56!7.79!TSHZ3;;chr6:34204973..34204990,+!p4@HMGA1!0.55!42.65!HMGA1;;chr3:71007344..71007348,-!p6@FOXP1!0.55!12.43!FOXP1;;chr12:66218443..66218461,+!p8@HMGA2!0.55!3.49!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.18!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.54!2.44!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.54!2.44!TCF12;;chr19:31840168..31840186,-!p6@TSHZ3!0.54!2.44!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.44!PRRX1;;chr2:169312600..169312606,+!p2@CERS6!0.53!4.18!CERS6;;chr1:8926369..8926385,-!p12@ENO1!0.53!3.49!ENO1;;chr15:96881221..96881240,+!p19@NR2F2!0.53!3.37!NR2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.53!3.25!AEBP1;;chr15:96873921..96873946,+!p1@NR2F2!0.52!85.18!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.55!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.52!3.83!HOXB4;;chr16:86601052..86601066,+!p4@FOXC2!0.52!2.32!FOXC2;;chr7:15726243..15726293,-!p2@MEOX2!0.52!2.32!MEOX2;;chr12:54380112..54380126,+!p5@HOXC10!0.52!2.32!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.52!2.32!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.52!2.32!HOXC5;;chr12:85673977..85674015,+!p1@ALX1!0.52!2.32!ALX1;;chr11:65686855..65686946,+!p1@DRAP1!0.51!222.19!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.51!7.09!ZFPM2;;chr1:221052776..221052799,+!p1@HLX!0.51!4.65!HLX;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.60!NR2F2;;chr17:46622205..46622218,-!p3@HOXB2!0.51!2.67!HOXB2;;chr9:1051481..1051496,+!p3@DMRT2!0.51!2.21!DMRT2;;chr11:46299443..46299459,+!p4@CREB3L1!0.51!2.21!CREB3L1;;chr12:66218469..66218477,+!p16@HMGA2!0.51!2.21!HMGA2;;chr7:137686763..137686784,-!p5@CREB3L2!0.50!4.30!CREB3L2;;chr19:45260775..45260838,+!p5@BCL3!0.50!3.02!BCL3;;chr6:144329384..144329405,-!p1@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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002582 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11429-118G7 | |id=FF:11429-118G7 | ||
|is_a=EFO:0002091;;FF:0000143 | |is_a=EFO:0002091;;FF:0000143 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12039 | |library_id=CNhs12039 | ||
| | |library_id_phase_based=2:CNhs12039 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11429 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ACTTGA.11429 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11429 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ACTTGA.11429 | |||
|name=Preadipocyte - visceral, donor3 | |name=Preadipocyte - visceral, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12039,LSID838,release011,COMPLETED | |profile_hcage=CNhs12039,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 66: | Line 82: | ||
|rna_tube_id=118G7 | |rna_tube_id=118G7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.ACTTGA | |||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 89: | Line 106: | ||
|top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106 | |top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11429-118G7;search_select_hide=table117:FF:11429-118G7 | |||
}} | }} |
Latest revision as of 18:00, 4 June 2020
Name: | Preadipocyte - visceral, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12039 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12039
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12039
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.514 |
10 | 10 | 0.217 |
100 | 100 | 0.928 |
101 | 101 | 0.233 |
102 | 102 | 0.684 |
103 | 103 | 0.265 |
104 | 104 | 0.911 |
105 | 105 | 0.233 |
106 | 106 | 0.542 |
107 | 107 | 0.183 |
108 | 108 | 0.355 |
109 | 109 | 0.0731 |
11 | 11 | 0.235 |
110 | 110 | 0.045 |
111 | 111 | 0.804 |
112 | 112 | 0.108 |
113 | 113 | 0.00689 |
114 | 114 | 0.529 |
115 | 115 | 0.00672 |
116 | 116 | 0.0271 |
117 | 117 | 0.255 |
118 | 118 | 0.935 |
119 | 119 | 0.737 |
12 | 12 | 0.455 |
120 | 120 | 0.0973 |
121 | 121 | 0.919 |
122 | 122 | 0.019 |
123 | 123 | 0.00953 |
124 | 124 | 0.566 |
125 | 125 | 0.265 |
126 | 126 | 0.711 |
127 | 127 | 0.731 |
128 | 128 | 0.649 |
129 | 129 | 0.973 |
13 | 13 | 0.845 |
130 | 130 | 0.402 |
131 | 131 | 0.288 |
132 | 132 | 0.42 |
133 | 133 | 0.0767 |
134 | 134 | 0.731 |
135 | 135 | 0.904 |
136 | 136 | 0.292 |
137 | 137 | 0.531 |
138 | 138 | 0.567 |
139 | 139 | 0.358 |
14 | 14 | 0.0783 |
140 | 140 | 0.545 |
141 | 141 | 0.896 |
142 | 142 | 0.769 |
143 | 143 | 0.213 |
144 | 144 | 0.969 |
145 | 145 | 0.686 |
146 | 146 | 0.424 |
147 | 147 | 0.0552 |
148 | 148 | 0.59 |
149 | 149 | 0.142 |
15 | 15 | 0.574 |
150 | 150 | 0.108 |
151 | 151 | 0.799 |
152 | 152 | 0.0187 |
153 | 153 | 0.423 |
154 | 154 | 0.638 |
155 | 155 | 0.237 |
156 | 156 | 0.758 |
157 | 157 | 0.373 |
158 | 158 | 0.00853 |
159 | 159 | 0.169 |
16 | 16 | 0.0286 |
160 | 160 | 0.154 |
161 | 161 | 0.522 |
162 | 162 | 0.694 |
163 | 163 | 0.45 |
164 | 164 | 0.253 |
165 | 165 | 0.53 |
166 | 166 | 0.379 |
167 | 167 | 0.368 |
168 | 168 | 0.823 |
169 | 169 | 0.0244 |
17 | 17 | 0.271 |
18 | 18 | 0.296 |
19 | 19 | 0.0198 |
2 | 2 | 0.116 |
20 | 20 | 0.503 |
21 | 21 | 0.0163 |
22 | 22 | 0.264 |
23 | 23 | 0.597 |
24 | 24 | 0.96 |
25 | 25 | 0.514 |
26 | 26 | 0.259 |
27 | 27 | 0.116 |
28 | 28 | 0.0869 |
29 | 29 | 0.1 |
3 | 3 | 0.372 |
30 | 30 | 0.181 |
31 | 31 | 0.85 |
32 | 32 | 3.93155e-8 |
33 | 33 | 0.993 |
34 | 34 | 0.525 |
35 | 35 | 0.71 |
36 | 36 | 0.0161 |
37 | 37 | 0.0494 |
38 | 38 | 0.954 |
39 | 39 | 0.0944 |
4 | 4 | 0.282 |
40 | 40 | 0.143 |
41 | 41 | 0.177 |
42 | 42 | 0.903 |
43 | 43 | 0.78 |
44 | 44 | 0.0103 |
45 | 45 | 0.972 |
46 | 46 | 0.241 |
47 | 47 | 0.649 |
48 | 48 | 0.483 |
49 | 49 | 0.288 |
5 | 5 | 0.593 |
50 | 50 | 0.447 |
51 | 51 | 0.595 |
52 | 52 | 0.831 |
53 | 53 | 0.116 |
54 | 54 | 0.722 |
55 | 55 | 0.509 |
56 | 56 | 0.89 |
57 | 57 | 0.72 |
58 | 58 | 0.61 |
59 | 59 | 0.0194 |
6 | 6 | 0.412 |
60 | 60 | 0.905 |
61 | 61 | 0.802 |
62 | 62 | 0.477 |
63 | 63 | 0.631 |
64 | 64 | 0.766 |
65 | 65 | 0.299 |
66 | 66 | 0.509 |
67 | 67 | 0.504 |
68 | 68 | 0.726 |
69 | 69 | 0.2 |
7 | 7 | 0.402 |
70 | 70 | 0.929 |
71 | 71 | 0.167 |
72 | 72 | 0.718 |
73 | 73 | 0.00925 |
74 | 74 | 0.144 |
75 | 75 | 0.14 |
76 | 76 | 0.819 |
77 | 77 | 0.00265 |
78 | 78 | 0.471 |
79 | 79 | 0.0203 |
8 | 8 | 0.046 |
80 | 80 | 0.492 |
81 | 81 | 0.997 |
82 | 82 | 0.658 |
83 | 83 | 0.745 |
84 | 84 | 0.683 |
85 | 85 | 0.78 |
86 | 86 | 0.576 |
87 | 87 | 0.00747 |
88 | 88 | 0.565 |
89 | 89 | 0.0645 |
9 | 9 | 0.162 |
90 | 90 | 0.135 |
91 | 91 | 0.831 |
92 | 92 | 0.524 |
93 | 93 | 0.758 |
94 | 94 | 0.666 |
95 | 95 | 0.00269 |
96 | 96 | 0.393 |
97 | 97 | 0.999 |
98 | 98 | 0.671 |
99 | 99 | 0.0047 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12039
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)