FF:11461-119B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005825 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008124;DRR008996;DRZ000421;DRZ001806;DRZ011771;DRZ013156 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.34!218.89!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.01!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.93!84.67!EHF;;chr1:6479968..6479986,-!p1@HES2!1.84!68.77!HES2;;chr5:134369905..134369972,-!p1@PITX1!1.80!92.81!PITX1;;chr1:209979411..209979433,-!p2@IRF6!1.76!56.94!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.75!62.49!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!54.72!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.62!40.67!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.60!79.13!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.58!56.57!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.57!35.87!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.46!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!36.98!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.50!82.82!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.44!26.62!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.42!256.98!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.51!SOX7;;chr20:22565185..22565223,-!p3@FOXA2!1.42!25.14!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!1.32!19.97!FOXA2;;chr22:19748231..19748317,+!p1@TBX1!1.31!19.60!TBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.31!19.60!SPDEF;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.23!ZNF750;;chr3:111314186..111314204,-!p1@ZBED2!1.28!18.12!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.24!141.62!PPP1R13L;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.27!IRX2;;chr14:37131058..37131139,+!p1@PAX9!1.23!15.90!PAX9;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.19!14.42!SPDEF;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.31!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.16!13.31!GRHL3;;chr14:90085820..90085840,-!p6@FOXN3!1.12!12.20!FOXN3;;chr20:22564895..22564910,-!p1@FOXA2!1.11!11.83!FOXA2;;chr17:8027418..8027432,-!p1@HES7!1.10!11.46!HES7;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.68!PRDM1;;chr15:101069113..101069169,-!p1@CERS3!1.07!10.72!CERS3;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.16!FOXQ1;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.24!TFAP2A;;chr11:34642656..34642667,+!p2@EHF!1.01!9.24!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!0.99!8.87!NKX2-8;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.29!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.50!OTX1;;chr1:24645921..24645973,+!p2@GRHL3!0.98!8.50!GRHL3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.97!31.80!ZBTB7B;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.13!TFCP2L1;;chr4:57547454..57547469,-!p1@HOPX!0.94!7.76!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!0.89!45.48!SNAI2;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr2:70142232..70142251,+!p1@MXD1!0.88!39.19!MXD1;;chr17:46132044..46132080,+!p4@NFE2L1!0.88!6.66!NFE2L1;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.66!GRHL2;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.72!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.87!8.87!RUNX1;;chr2:46524878..46524891,+!p3@EPAS1!0.86!11.46!EPAS1;;chr3:189507460..189507471,+!p3@TP63!0.86!6.29!TP63;;chr1:209979375..209979386,-!p4@IRF6!0.86!6.29!IRF6;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.29!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.29!OVOL1;;chr6:34204672..34204692,+!p1@HMGA1!0.85!732.85!HMGA1;;chr11:120107344..120107351,+!p1@POU2F3!0.85!7.40!POU2F3;;chr1:154975229..154975247,+!p6@ZBTB7B!0.84!5.92!ZBTB7B;;chr1:50889155..50889173,-!p2@DMRTA2!0.82!5.55!DMRTA2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.55!IRX2;;chr12:66218598..66218645,+!p2@HMGA2!0.81!26.99!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.49!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.90!POU2F2;;chr8:128748308..128748324,+!p2@MYC!0.80!160.84!MYC;;chr12:27485762..27485776,+!p3@ARNTL2!0.80!15.16!ARNTL2;;chr6:10413188..10413249,-!p7@TFAP2A!0.79!5.18!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!0.79!5.18!ZBED2;;chr17:45928443..45928473,-!p2@SP6!0.79!5.18!SP6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.19!ZC3H12A;;chr2:239148671..239148686,-!p1@HES6!0.77!19.23!HES6;;chr12:53625966..53626012,-!p2@RARG!0.76!13.68!RARG;;chr11:34645791..34645836,+!p3@EHF!0.76!4.81!EHF;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.81!PRDM1;;chr20:18038521..18038571,-!p1@OVOL2!0.76!4.81!OVOL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.75!364.95!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.75!135.33!FOSL1;;chrX:107018969..107019024,-!p6@TSC22D3!0.75!6.66!TSC22D3;;chr17:41623075..41623101,-!p9@ETV4!0.75!5.55!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.74!152.34!HMGA1;;chr12:48298765..48298783,-!p2@VDR!0.74!9.98!VDR;;chr1:24646263..24646277,+!p4@GRHL3!0.74!4.44!GRHL3;;chr6:10419768..10419819,-!p6@TFAP2A!0.74!4.44!TFAP2A;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.34!ETV4;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.76!TWIST2;;chr8:49833978..49833996,-!p1@SNAI2!0.71!97.25!SNAI2;;chr14:21566731..21566836,-!p1@ZNF219!0.71!49.92!ZNF219;;chr12:66218003..66218018,+!p9@HMGA2!0.71!5.18!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.71!5.18!ETV4;;chr11:64073022..64073056,+!p1@ESRRA!0.70!53.98!ESRRA;;ch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XP4;;chr8:80680078..80680101,-!p3@HEY1!0.20!0.74!HEY1;;chr14:64971346..64971357,-!p9@ZBTB25!0.20!0.74!ZBTB25;;chr2:178129414..178129517,-!p1@NFE2L2!0.19!55.83!NFE2L2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.24!BCL3;;chr6:32157947..32157992,-!p1@PBX2!0.19!23.29!PBX2;;chr7:137686824..137686865,-!p2@CREB3L2!0.19!17.01!CREB3L2;;chr19:42724436..42724507,+!p1@ZNF526!0.19!11.09!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.19!9.98!TFAP4;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.50!SREBF1;;chr6:43138999..43139017,+!p2@SRF!0.19!7.76!SRF;;chr12:57400261..57400344,-!p1@ZBTB39!0.19!5.92!ZBTB39;;chr6:20403916..20403965,+!p3@E2F3!0.19!5.55!E2F3;;chr2:27357446..27357475,-!p2@PREB!0.19!4.07!PREB;;chr7:148787768..148787825,-!p1@ZNF786!0.19!3.70!ZNF786;;chrX:106959661..106959763,-!p4@TSC22D3!0.19!3.33!TSC22D3;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.33!ZNF836;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.33!NFIA;;chr13:45011349..45011391,-!p4@TSC22D1!0.19!2.59!TSC22D1;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.22!ZNF32;;chr14:61191018..61191048,-!p1@SIX4!0.19!2.22!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.19!2.22!ZNF283;;chr14:74353454..74353469,+!p4@ZNF410!0.19!1.85!ZNF410;;chr11:130184644..130184662,-!p5@ZBTB44!0.19!1.48!ZBTB44;;chr9:35732312..35732324,+!p4@CREB3!0.19!1.48!CREB3;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.48!NFIB;;chr15:31619871..31619884,+!p8@KLF13!0.19!1.48!KLF13;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.48!ZNF771;;chr16:30546275..30546297,-!p2@ZNF747!0.19!1.11!ZNF747;;chr3:126076264..126076305,-!p2@KLF15!0.19!1.11!KLF15;;chr8:128750983..128751021,+!p11@MYC!0.19!1.11!MYC;;chr1:120190761..120190782,-!p2@ZNF697!0.19!1.11!ZNF697;;chr19:59030961..59030974,-!p4@ZBTB45!0.19!0.74!ZBTB45;;chr20:44600785..44600794,-!p7@ZNF335!0.19!0.74!ZNF335;;chr2:27805971..27805981,+!p3@ZNF512!0.19!0.74!ZNF512;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.74!SIX1;;chr17:17726892..17726903,-!p6@SREBF1!0.19!0.74!SREBF1;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.74!RFXANK;;chr8:80680024..80680046,-!p2@HEY1!0.19!0.74!HEY1;;chr16:89940012..89940059,+!p1@TCF25!0.18!117.21!TCF25;;chr19:1652575..1652621,-!p1@TCF3!0.18!52.51!TCF3;;chr11:128392085..128392232,-!p1@ETS1!0.18!45.48!ETS1;;chr18:51750948..51751059,-!p1@MBD2!0.18!43.26!MBD2;;chr19:11071685..11071798,+!p1@SMARCA4!0.18!38.45!SMARCA4;;chr19:56152361..56152434,+!p1@ZNF580!0.18!36.24!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.18!23.66!ZBTB17;;chr3:52001448..52001478,-!p2@PCBP4!0.18!18.49!PCBP4;;chr22:30162924..30163005,-!p1@ZMAT5!0.18!16.27!ZMAT5;;chr6:7107939..7107993,+!p1@RREB1!0.18!15.53!RREB1;;chr19:57702846..57702891,+!p1@ZNF264!0.18!13.31!ZNF264;;chr11:13299319..13299424,+!p1@ARNTL!0.18!13.31!ARNTL;;chr12:8185288..8185339,+!p1@FOXJ2!0.18!13.31!FOXJ2;;chr6:44233252..44233296,-!p1@NFKBIE!0.18!12.94!NFKBIE;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.57!ZNF576;;chr19:58662139..58662182,-!p1@ZNF329!0.18!5.92!ZNF329;;chr7:150076406..150076456,+!p1@ZNF775!0.18!5.55!ZNF775;;chr16:73092898..73092931,-!p1@ZFHX3!0.18!4.44!ZFHX3;;chr12:53848505..53848532,+!p4@PCBP2!0.18!2.22!PCBP2;;chr19:50879683..50879695,+!p2@NR1H2!0.18!2.22!NR1H2;;chr2:121493425..121493474,+!p1@GLI2!0.18!2.22!GLI2;;chr6:42419043..42419087,-!p2@TRERF1!0.18!1.85!TRERF1;;chr19:6280007..6280019,-!p3@MLLT1!0.18!1.85!MLLT1;;chr4:38665753..38665757,+!p7@KLF3!0.18!1.48!KLF3;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.48!TSC22D1;;chr7:148844581..148844606,+!p2@ZNF398!0.18!1.48!ZNF398;;chr1:151431674..151431685,-!p4@POGZ!0.18!1.11!POGZ;;chr1:42800614..42800649,-!p5@FOXJ3!0.18!1.11!FOXJ3;;chrX:131623932..131623964,-!p7@MBNL3!0.18!1.11!MBNL3;;chrX:107019163..107019179,-!p7@TSC22D3!0.18!0.74!TSC22D3;;chr6:32158004..32158015,-!p2@PBX2!0.18!0.74!PBX2;;chr7:148844498..148844507,+!p6@ZNF398!0.18!0.74!ZNF398;;chr7:99156011..99156036,+!p7@ZNF655!0.18!0.74!ZNF655;;chr7:99679311..99679322,-!p3@ZNF3!0.18!0.74!ZNF3;;chr3:169381420..169381535,-!p1@MECOM!0.18!0.74!MECOM;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.74!TGIF1;;chr18:56530595..56530606,+!p11@ZNF532!0.18!0.74!ZNF532;;chr5:149380256..149380343,+!p1@HMGXB3!0.17!39.19!HMGXB3;;chr19:39390587..39390646,+!p1@NFKBIB!0.17!20.71!NFKBIB;;chr1:6685228..6685270,+!p1@THAP3!0.17!8.87!THAP3;;chr2:42795839..42795887,+!p2@MTA3!0.17!8.50!MTA3;;chr3:40518599..40518664,+!p1@ZNF619!0.17!7.03!ZNF619;;chr14:74226747..74226779,-!p3@C14orf43!0.17!6.66!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.17!5.92!C14orf43;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.44!MEIS1;;chr2:208030488..208030551,-!p3@KLF7!0.17!4.07!KLF7;;chr7:17338324..17338341,+!p3@AHR!0.17!3.70!AHR;;chr14:64971288..64971316,-!p2@ZBTB25!0.17!3.33!ZBTB25;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.96!RUNX1;;chr4:1873155..1873185,+!p3@WHSC1!0.17!2.96!WHSC1;;chr2:74229812..74229867,+!p1@TET3!0.17!2.59!TET3;;chr14:35872962..35873025,-!p3@NFKBIA!0.17!2.59!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.17!2.22!CARHSP1;;chr19:17356436..17356481,-!p3@NR2F6!0.17!1.48!NR2F6;;chr12:3068501..3068515,+!p4@TEAD4!0.17!1.48!TEAD4;;c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| 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XP4;;chr8:80680078..80680101,-!p3@HEY1!0.20!0.74!HEY1;;chr14:64971346..64971357,-!p9@ZBTB25!0.20!0.74!ZBTB25;;chr2:178129414..178129517,-!p1@NFE2L2!0.19!55.83!NFE2L2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.24!BCL3;;chr6:32157947..32157992,-!p1@PBX2!0.19!23.29!PBX2;;chr7:137686824..137686865,-!p2@CREB3L2!0.19!17.01!CREB3L2;;chr19:42724436..42724507,+!p1@ZNF526!0.19!11.09!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.19!9.98!TFAP4;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.50!SREBF1;;chr6:43138999..43139017,+!p2@SRF!0.19!7.76!SRF;;chr12:57400261..57400344,-!p1@ZBTB39!0.19!5.92!ZBTB39;;chr6:20403916..20403965,+!p3@E2F3!0.19!5.55!E2F3;;chr2:27357446..27357475,-!p2@PREB!0.19!4.07!PREB;;chr7:148787768..148787825,-!p1@ZNF786!0.19!3.70!ZNF786;;chrX:106959661..106959763,-!p4@TSC22D3!0.19!3.33!TSC22D3;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.33!ZNF836;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.33!NFIA;;chr13:45011349..45011391,-!p4@TSC22D1!0.19!2.59!TSC22D1;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.22!ZNF32;;chr14:61191018..61191048,-!p1@SIX4!0.19!2.22!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.19!2.22!ZNF283;;chr14:74353454..74353469,+!p4@ZNF410!0.19!1.85!ZNF410;;chr11:130184644..130184662,-!p5@ZBTB44!0.19!1.48!ZBTB44;;chr9:35732312..35732324,+!p4@CREB3!0.19!1.48!CREB3;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.48!NFIB;;chr15:31619871..31619884,+!p8@KLF13!0.19!1.48!KLF13;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.48!ZNF771;;chr16:30546275..30546297,-!p2@ZNF747!0.19!1.11!ZNF747;;chr3:126076264..126076305,-!p2@KLF15!0.19!1.11!KLF15;;chr8:128750983..128751021,+!p11@MYC!0.19!1.11!MYC;;chr1:120190761..120190782,-!p2@ZNF697!0.19!1.11!ZNF697;;chr19:59030961..59030974,-!p4@ZBTB45!0.19!0.74!ZBTB45;;chr20:44600785..44600794,-!p7@ZNF335!0.19!0.74!ZNF335;;chr2:27805971..27805981,+!p3@ZNF512!0.19!0.74!ZNF512;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.74!SIX1;;chr17:17726892..17726903,-!p6@SREBF1!0.19!0.74!SREBF1;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.74!RFXANK;;chr8:80680024..80680046,-!p2@HEY1!0.19!0.74!HEY1;;chr16:89940012..89940059,+!p1@TCF25!0.18!117.21!TCF25;;chr19:1652575..1652621,-!p1@TCF3!0.18!52.51!TCF3;;chr11:128392085..128392232,-!p1@ETS1!0.18!45.48!ETS1;;chr18:51750948..51751059,-!p1@MBD2!0.18!43.26!MBD2;;chr19:11071685..11071798,+!p1@SMARCA4!0.18!38.45!SMARCA4;;chr19:56152361..56152434,+!p1@ZNF580!0.18!36.24!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.18!23.66!ZBTB17;;chr3:52001448..52001478,-!p2@PCBP4!0.18!18.49!PCBP4;;chr22:30162924..30163005,-!p1@ZMAT5!0.18!16.27!ZMAT5;;chr6:7107939..7107993,+!p1@RREB1!0.18!15.53!RREB1;;chr19:57702846..57702891,+!p1@ZNF264!0.18!13.31!ZNF264;;chr11:13299319..13299424,+!p1@ARNTL!0.18!13.31!ARNTL;;chr12:8185288..8185339,+!p1@FOXJ2!0.18!13.31!FOXJ2;;chr6:44233252..44233296,-!p1@NFKBIE!0.18!12.94!NFKBIE;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.57!ZNF576;;chr19:58662139..58662182,-!p1@ZNF329!0.18!5.92!ZNF329;;chr7:150076406..150076456,+!p1@ZNF775!0.18!5.55!ZNF775;;chr16:73092898..73092931,-!p1@ZFHX3!0.18!4.44!ZFHX3;;chr12:53848505..53848532,+!p4@PCBP2!0.18!2.22!PCBP2;;chr19:50879683..50879695,+!p2@NR1H2!0.18!2.22!NR1H2;;chr2:121493425..121493474,+!p1@GLI2!0.18!2.22!GLI2;;chr6:42419043..42419087,-!p2@TRERF1!0.18!1.85!TRERF1;;chr19:6280007..6280019,-!p3@MLLT1!0.18!1.85!MLLT1;;chr4:38665753..38665757,+!p7@KLF3!0.18!1.48!KLF3;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.48!TSC22D1;;chr7:148844581..148844606,+!p2@ZNF398!0.18!1.48!ZNF398;;chr1:151431674..151431685,-!p4@POGZ!0.18!1.11!POGZ;;chr1:42800614..42800649,-!p5@FOXJ3!0.18!1.11!FOXJ3;;chrX:131623932..131623964,-!p7@MBNL3!0.18!1.11!MBNL3;;chrX:107019163..107019179,-!p7@TSC22D3!0.18!0.74!TSC22D3;;chr6:32158004..32158015,-!p2@PBX2!0.18!0.74!PBX2;;chr7:148844498..148844507,+!p6@ZNF398!0.18!0.74!ZNF398;;chr7:99156011..99156036,+!p7@ZNF655!0.18!0.74!ZNF655;;chr7:99679311..99679322,-!p3@ZNF3!0.18!0.74!ZNF3;;chr3:169381420..169381535,-!p1@MECOM!0.18!0.74!MECOM;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.74!TGIF1;;chr18:56530595..56530606,+!p11@ZNF532!0.18!0.74!ZNF532;;chr5:149380256..149380343,+!p1@HMGXB3!0.17!39.19!HMGXB3;;chr19:39390587..39390646,+!p1@NFKBIB!0.17!20.71!NFKBIB;;chr1:6685228..6685270,+!p1@THAP3!0.17!8.87!THAP3;;chr2:42795839..42795887,+!p2@MTA3!0.17!8.50!MTA3;;chr3:40518599..40518664,+!p1@ZNF619!0.17!7.03!ZNF619;;chr14:74226747..74226779,-!p3@C14orf43!0.17!6.66!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.17!5.92!C14orf43;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.44!MEIS1;;chr2:208030488..208030551,-!p3@KLF7!0.17!4.07!KLF7;;chr7:17338324..17338341,+!p3@AHR!0.17!3.70!AHR;;chr14:64971288..64971316,-!p2@ZBTB25!0.17!3.33!ZBTB25;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.96!RUNX1;;chr4:1873155..1873185,+!p3@WHSC1!0.17!2.96!WHSC1;;chr2:74229812..74229867,+!p1@TET3!0.17!2.59!TET3;;chr14:35872962..35873025,-!p3@NFKBIA!0.17!2.59!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.17!2.22!CARHSP1;;chr19:17356436..17356481,-!p3@NR2F6!0.17!1.48!NR2F6;;chr12:3068501..3068515,+!p4@TEAD4!0.17!1.48!TEAD4;;c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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11461-119B3 | |id=FF:11461-119B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000015 | ||
|is_obsolete= | |||
|library_id=CNhs12062 | |||
|library_id_phase_based=2:CNhs12062 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11461 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11461 | |||
|name=Bronchial Epithelial Cell, donor6 | |name=Bronchial Epithelial Cell, donor6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12062,LSID838,release011,COMPLETED | |profile_hcage=CNhs12062,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0801084053993974,0.240426435485783,0.049297236645582,0.558776574684672,0,0,0,0,0,0,0,0,0.136642580572897,0,0.240426435485783,0,0,0.170807524503245,0,0,0,0.253828380085109,0,0.35669949867716,0,0,0.261322747134458,0,0,0,0,0,0,0,0,0,0,0.324130534851672,0,0.200713151275616,0.346642226252401,0,0,0,0,0,0,0,0.0441062691736141,0,0,0,0,0,0,0,0.0396502193302916,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0.136642580572897,0,0,0,-0.066593981521827,0,0,0,0,0,0,0.0164824628957653,0,0,0,0.0459515408379944,0.01613129477674,0,0,0,0,-0.0980353512377064,0.507681270864739,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0910391147779905,0.241766948505469,0,0,0.136642580572897,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=CA502-R10a | |rna_catalog_number=CA502-R10a | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=TP53:2.64136570588;PPARG:2.34950630365;TBX4,5:2.19696265597;ZEB1:1.94925354267;SNAI1..3:1.86544576101;VSX1,2:1.81813576684;MYOD1:1.71583234485;ZNF148:1.54553994492;NR5A1,2:1.30266480015;POU2F1..3:1.204899181;HMX1:1.1424746453;ZNF423:1.12931586636;ONECUT1,2:1.06008204411;EBF1:1.05312598823;TFCP2:0.989272667828;CRX:0.898478245184;SP1:0.874323940079;PAX1,9:0.858025927052;XCPE1{core}:0.855745162312;GLI1..3:0.845010195239;LMO2:0.804358466897;TEAD1:0.798668004232;ELK1,4_GABP{A,B1}:0.758136483863;ADNP_IRX_SIX_ZHX:0.754561525917;GTF2A1,2:0.732351465251;IKZF1:0.731292552123;TBP:0.725224320753;ARID5B:0.6920317071;ESR1:0.668581952197;CEBPA,B_DDIT3:0.655844872078;FOS_FOS{B,L1}_JUN{B,D}:0.654155793581;HAND1,2:0.622402508974;TFAP2{A,C}:0.584200002944;BACH2:0.558156979297;RXRA_VDR{dimer}:0.535652693151;FOXM1:0.52622137019;AR:0.47841722108;MTF1:0.465864022678;ZIC1..3:0.464573385261;TFAP4:0.464073587371;RXR{A,B,G}:0.458360020143;NANOG:0.422926177996;bHLH_family:0.408148555292;FOXQ1:0.401439697232;HLF:0.385446069564;FOSL2:0.350271516904;POU1F1:0.348765652473;EP300:0.338054101116;TEF:0.303439020217;ALX4:0.301516288916;NFE2:0.28320258161;TLX1..3_NFIC{dimer}:0.236101691317;NKX2-2,8:0.215712004944;NFIL3:0.195163549634;HIF1A:0.172599015626;HES1:0.169097008831;ZBTB6:0.167506120239;PAX2:0.163780777867;UFEwm:0.13132209898;REST:0.113285784348;TLX2:0.104533898653;CDC5L:0.0890889977597;HOX{A5,B5}:0.0778854905583;ATF4:0.0585186497405;PAX8:0.0557014151599;YY1:0.041457796943;ZNF238:0.0124691190493;NKX2-3_NKX2-5:0.00703132523121;GZF1:-0.0129677954153;SMAD1..7,9:-0.0298912134424;POU6F1:-0.0347730721053;HNF4A_NR2F1,2:-0.0358048391186;STAT5{A,B}:-0.0366259624037;GFI1B:-0.0395027488789;ESRRA:-0.043202953882;NR1H4:-0.0480194665562;SOX17:-0.0635996487895;FOX{F1,F2,J1}:-0.0838793597966;NFKB1_REL_RELA:-0.0884782453132;KLF4:-0.136375000119;ELF1,2,4:-0.142558567872;SPZ1:-0.144785568615;T:-0.159632054418;ETS1,2:-0.169063639791;RBPJ:-0.171655709052;LEF1_TCF7_TCF7L1,2:-0.18099941069;NFE2L1:-0.183052767063;NKX2-1,4:-0.18519337874;LHX3,4:-0.186925698689;ZNF143:-0.208726793274;MAZ:-0.222016349224;POU5F1:-0.225898899804;MAFB:-0.229163827973;NKX3-2:-0.253317769006;TFAP2B:-0.253515009753;SOX{8,9,10}:-0.261387173383;PAX5:-0.263701062127;RREB1:-0.26789929249;HNF1A:-0.281361363254;NR3C1:-0.285347053381;SOX2:-0.289784065636;NR6A1:-0.291221543251;GATA6:-0.304459584872;NFE2L2:-0.309837967337;MED-1{core}:-0.330946627162;ATF2:-0.349069050458;SPIB:-0.362354577075;ATF5_CREB3:-0.376464169699;PBX1:-0.382643955341;GFI1:-0.420878593262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422207159556;JUN:-0.424350148757;TOPORS:-0.431886113453;STAT2,4,6:-0.43745401559;HIC1:-0.444509316782;NRF1:-0.462719358927;EN1,2:-0.467718950838;RFX1:-0.482094082642;GTF2I:-0.483558005105;PAX4:-0.484368645247;HOX{A4,D4}:-0.492893795208;NFY{A,B,C}:-0.497802294288;RFX2..5_RFXANK_RFXAP:-0.516003484283;RUNX1..3:-0.51914370325;TFDP1:-0.522224642479;RORA:-0.54183359282;SPI1:-0.545305937103;ALX1:-0.556028253715;POU3F1..4:-0.564348678712;OCT4_SOX2{dimer}:-0.56670916099;MYB:-0.594635200738;IRF7:-0.615457789616;CREB1:-0.618710903096;PDX1:-0.621675110559;AIRE:-0.625411455493;EGR1..3:-0.631873635936;MEF2{A,B,C,D}:-0.640815046781;FOXL1:-0.641490541716;GCM1,2:-0.653756482119;HOX{A6,A7,B6,B7}:-0.667924543511;SRF:-0.717975577704;ATF6:-0.72329378648;FOXN1:-0.733979591953;MYBL2:-0.742246111473;NHLH1,2:-0.74983936378;AHR_ARNT_ARNT2:-0.751396011698;NANOG{mouse}:-0.789936164879;NFIX:-0.799091354301;PATZ1:-0.803062010788;PITX1..3:-0.846071773632;ZFP161:-0.860234880283;CUX2:-0.887680930216;E2F1..5:-0.901404993402;MTE{core}:-0.918575014399;PRRX1,2:-0.934164892375;HSF1,2:-0.936199757074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.936768563992;MYFfamily:-0.95950493475;MZF1:-0.965564310116;NFATC1..3:-0.989878442326;EVI1:-0.999369189339;NKX3-1:-1.02958390472;BREu{core}:-1.04647753779;XBP1:-1.0528157374;PRDM1:-1.07316674808;CDX1,2,4:-1.13039185155;TGIF1:-1.13079696078;SOX5:-1.1599703934;FOX{D1,D2}:-1.17786876277;HOXA9_MEIS1:-1.19587876146;PAX3,7:-1.22525252503;TAL1_TCF{3,4,12}:-1.2277347948;FOXP1:-1.263304932;FOX{I1,J2}:-1.28811559388;PAX6:-1.30259933435;NKX6-1,2:-1.30552187016;DMAP1_NCOR{1,2}_SMARC:-1.33005878061;BPTF:-1.36161245585;FOXO1,3,4:-1.37668956331;SREBF1,2:-1.41051335341;ZBTB16:-1.4356780709;IRF1,2:-1.44259663671;DBP:-1.49479695238;FOXA2:-1.56211107216;FOXD3:-1.56758188306;FOXP3:-1.5987280216;ZNF384:-1.60380928621;STAT1,3:-1.6134275139;GATA4:-1.767009796;IKZF2:-1.98517950199;HMGA1,2:-2.15370547962;HBP1_HMGB_SSRP1_UBTF:-2.23426326489 | |top_motifs=TP53:2.64136570588;PPARG:2.34950630365;TBX4,5:2.19696265597;ZEB1:1.94925354267;SNAI1..3:1.86544576101;VSX1,2:1.81813576684;MYOD1:1.71583234485;ZNF148:1.54553994492;NR5A1,2:1.30266480015;POU2F1..3:1.204899181;HMX1:1.1424746453;ZNF423:1.12931586636;ONECUT1,2:1.06008204411;EBF1:1.05312598823;TFCP2:0.989272667828;CRX:0.898478245184;SP1:0.874323940079;PAX1,9:0.858025927052;XCPE1{core}:0.855745162312;GLI1..3:0.845010195239;LMO2:0.804358466897;TEAD1:0.798668004232;ELK1,4_GABP{A,B1}:0.758136483863;ADNP_IRX_SIX_ZHX:0.754561525917;GTF2A1,2:0.732351465251;IKZF1:0.731292552123;TBP:0.725224320753;ARID5B:0.6920317071;ESR1:0.668581952197;CEBPA,B_DDIT3:0.655844872078;FOS_FOS{B,L1}_JUN{B,D}:0.654155793581;HAND1,2:0.622402508974;TFAP2{A,C}:0.584200002944;BACH2:0.558156979297;RXRA_VDR{dimer}:0.535652693151;FOXM1:0.52622137019;AR:0.47841722108;MTF1:0.465864022678;ZIC1..3:0.464573385261;TFAP4:0.464073587371;RXR{A,B,G}:0.458360020143;NANOG:0.422926177996;bHLH_family:0.408148555292;FOXQ1:0.401439697232;HLF:0.385446069564;FOSL2:0.350271516904;POU1F1:0.348765652473;EP300:0.338054101116;TEF:0.303439020217;ALX4:0.301516288916;NFE2:0.28320258161;TLX1..3_NFIC{dimer}:0.236101691317;NKX2-2,8:0.215712004944;NFIL3:0.195163549634;HIF1A:0.172599015626;HES1:0.169097008831;ZBTB6:0.167506120239;PAX2:0.163780777867;UFEwm:0.13132209898;REST:0.113285784348;TLX2:0.104533898653;CDC5L:0.0890889977597;HOX{A5,B5}:0.0778854905583;ATF4:0.0585186497405;PAX8:0.0557014151599;YY1:0.041457796943;ZNF238:0.0124691190493;NKX2-3_NKX2-5:0.00703132523121;GZF1:-0.0129677954153;SMAD1..7,9:-0.0298912134424;POU6F1:-0.0347730721053;HNF4A_NR2F1,2:-0.0358048391186;STAT5{A,B}:-0.0366259624037;GFI1B:-0.0395027488789;ESRRA:-0.043202953882;NR1H4:-0.0480194665562;SOX17:-0.0635996487895;FOX{F1,F2,J1}:-0.0838793597966;NFKB1_REL_RELA:-0.0884782453132;KLF4:-0.136375000119;ELF1,2,4:-0.142558567872;SPZ1:-0.144785568615;T:-0.159632054418;ETS1,2:-0.169063639791;RBPJ:-0.171655709052;LEF1_TCF7_TCF7L1,2:-0.18099941069;NFE2L1:-0.183052767063;NKX2-1,4:-0.18519337874;LHX3,4:-0.186925698689;ZNF143:-0.208726793274;MAZ:-0.222016349224;POU5F1:-0.225898899804;MAFB:-0.229163827973;NKX3-2:-0.253317769006;TFAP2B:-0.253515009753;SOX{8,9,10}:-0.261387173383;PAX5:-0.263701062127;RREB1:-0.26789929249;HNF1A:-0.281361363254;NR3C1:-0.285347053381;SOX2:-0.289784065636;NR6A1:-0.291221543251;GATA6:-0.304459584872;NFE2L2:-0.309837967337;MED-1{core}:-0.330946627162;ATF2:-0.349069050458;SPIB:-0.362354577075;ATF5_CREB3:-0.376464169699;PBX1:-0.382643955341;GFI1:-0.420878593262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422207159556;JUN:-0.424350148757;TOPORS:-0.431886113453;STAT2,4,6:-0.43745401559;HIC1:-0.444509316782;NRF1:-0.462719358927;EN1,2:-0.467718950838;RFX1:-0.482094082642;GTF2I:-0.483558005105;PAX4:-0.484368645247;HOX{A4,D4}:-0.492893795208;NFY{A,B,C}:-0.497802294288;RFX2..5_RFXANK_RFXAP:-0.516003484283;RUNX1..3:-0.51914370325;TFDP1:-0.522224642479;RORA:-0.54183359282;SPI1:-0.545305937103;ALX1:-0.556028253715;POU3F1..4:-0.564348678712;OCT4_SOX2{dimer}:-0.56670916099;MYB:-0.594635200738;IRF7:-0.615457789616;CREB1:-0.618710903096;PDX1:-0.621675110559;AIRE:-0.625411455493;EGR1..3:-0.631873635936;MEF2{A,B,C,D}:-0.640815046781;FOXL1:-0.641490541716;GCM1,2:-0.653756482119;HOX{A6,A7,B6,B7}:-0.667924543511;SRF:-0.717975577704;ATF6:-0.72329378648;FOXN1:-0.733979591953;MYBL2:-0.742246111473;NHLH1,2:-0.74983936378;AHR_ARNT_ARNT2:-0.751396011698;NANOG{mouse}:-0.789936164879;NFIX:-0.799091354301;PATZ1:-0.803062010788;PITX1..3:-0.846071773632;ZFP161:-0.860234880283;CUX2:-0.887680930216;E2F1..5:-0.901404993402;MTE{core}:-0.918575014399;PRRX1,2:-0.934164892375;HSF1,2:-0.936199757074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.936768563992;MYFfamily:-0.95950493475;MZF1:-0.965564310116;NFATC1..3:-0.989878442326;EVI1:-0.999369189339;NKX3-1:-1.02958390472;BREu{core}:-1.04647753779;XBP1:-1.0528157374;PRDM1:-1.07316674808;CDX1,2,4:-1.13039185155;TGIF1:-1.13079696078;SOX5:-1.1599703934;FOX{D1,D2}:-1.17786876277;HOXA9_MEIS1:-1.19587876146;PAX3,7:-1.22525252503;TAL1_TCF{3,4,12}:-1.2277347948;FOXP1:-1.263304932;FOX{I1,J2}:-1.28811559388;PAX6:-1.30259933435;NKX6-1,2:-1.30552187016;DMAP1_NCOR{1,2}_SMARC:-1.33005878061;BPTF:-1.36161245585;FOXO1,3,4:-1.37668956331;SREBF1,2:-1.41051335341;ZBTB16:-1.4356780709;IRF1,2:-1.44259663671;DBP:-1.49479695238;FOXA2:-1.56211107216;FOXD3:-1.56758188306;FOXP3:-1.5987280216;ZNF384:-1.60380928621;STAT1,3:-1.6134275139;GATA4:-1.767009796;IKZF2:-1.98517950199;HMGA1,2:-2.15370547962;HBP1_HMGB_SSRP1_UBTF:-2.23426326489 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11461-119B3;search_select_hide=table117:FF:11461-119B3 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Bronchial Epithelial Cell, donor6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12062 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12062
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12062
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.579 |
| 10 | 10 | 0.976 |
| 100 | 100 | 0.737 |
| 101 | 101 | 0.00153 |
| 102 | 102 | 0.0949 |
| 103 | 103 | 0.151 |
| 104 | 104 | 0.392 |
| 105 | 105 | 0.0888 |
| 106 | 106 | 0.0502 |
| 107 | 107 | 0.0716 |
| 108 | 108 | 0.44 |
| 109 | 109 | 5.50129e-4 |
| 11 | 11 | 0.0631 |
| 110 | 110 | 0.0716 |
| 111 | 111 | 0.502 |
| 112 | 112 | 0.243 |
| 113 | 113 | 0.433 |
| 114 | 114 | 0.349 |
| 115 | 115 | 0.163 |
| 116 | 116 | 0.274 |
| 117 | 117 | 0.174 |
| 118 | 118 | 0.908 |
| 119 | 119 | 0.142 |
| 12 | 12 | 0.32 |
| 120 | 120 | 0.0762 |
| 121 | 121 | 0.741 |
| 122 | 122 | 0.07 |
| 123 | 123 | 0.379 |
| 124 | 124 | 0.132 |
| 125 | 125 | 0.848 |
| 126 | 126 | 0.495 |
| 127 | 127 | 0.0344 |
| 128 | 128 | 0.612 |
| 129 | 129 | 0.121 |
| 13 | 13 | 0.0349 |
| 130 | 130 | 0.773 |
| 131 | 131 | 0.427 |
| 132 | 132 | 0.489 |
| 133 | 133 | 5.7783e-4 |
| 134 | 134 | 0.189 |
| 135 | 135 | 0.976 |
| 136 | 136 | 0.0753 |
| 137 | 137 | 0.0702 |
| 138 | 138 | 0.704 |
| 139 | 139 | 0.233 |
| 14 | 14 | 0.736 |
| 140 | 140 | 0.0489 |
| 141 | 141 | 0.421 |
| 142 | 142 | 0.0492 |
| 143 | 143 | 0.508 |
| 144 | 144 | 0.233 |
| 145 | 145 | 0.368 |
| 146 | 146 | 0.00567 |
| 147 | 147 | 0.0425 |
| 148 | 148 | 0.18 |
| 149 | 149 | 0.191 |
| 15 | 15 | 0.893 |
| 150 | 150 | 0.349 |
| 151 | 151 | 0.494 |
| 152 | 152 | 0.036 |
| 153 | 153 | 0.995 |
| 154 | 154 | 0.596 |
| 155 | 155 | 0.438 |
| 156 | 156 | 0.305 |
| 157 | 157 | 0.701 |
| 158 | 158 | 0.388 |
| 159 | 159 | 0.597 |
| 16 | 16 | 0.0202 |
| 160 | 160 | 0.313 |
| 161 | 161 | 0.395 |
| 162 | 162 | 0.39 |
| 163 | 163 | 0.699 |
| 164 | 164 | 0.271 |
| 165 | 165 | 0.235 |
| 166 | 166 | 0.13 |
| 167 | 167 | 0.264 |
| 168 | 168 | 0.768 |
| 169 | 169 | 0.0502 |
| 17 | 17 | 0.14 |
| 18 | 18 | 0.0569 |
| 19 | 19 | 0.404 |
| 2 | 2 | 0.175 |
| 20 | 20 | 0.717 |
| 21 | 21 | 0.476 |
| 22 | 22 | 0.187 |
| 23 | 23 | 0.58 |
| 24 | 24 | 0.109 |
| 25 | 25 | 0.81 |
| 26 | 26 | 0.143 |
| 27 | 27 | 0.448 |
| 28 | 28 | 0.762 |
| 29 | 29 | 0.238 |
| 3 | 3 | 0.582 |
| 30 | 30 | 0.0711 |
| 31 | 31 | 0.696 |
| 32 | 32 | 0.676 |
| 33 | 33 | 0.128 |
| 34 | 34 | 0.808 |
| 35 | 35 | 0.663 |
| 36 | 36 | 0.738 |
| 37 | 37 | 0.166 |
| 38 | 38 | 0.317 |
| 39 | 39 | 0.23 |
| 4 | 4 | 0.531 |
| 40 | 40 | 0.00877 |
| 41 | 41 | 0.659 |
| 42 | 42 | 0.966 |
| 43 | 43 | 0.446 |
| 44 | 44 | 0.582 |
| 45 | 45 | 0.205 |
| 46 | 46 | 0.411 |
| 47 | 47 | 0.181 |
| 48 | 48 | 0.069 |
| 49 | 49 | 0.988 |
| 5 | 5 | 0.66 |
| 50 | 50 | 0.522 |
| 51 | 51 | 0.761 |
| 52 | 52 | 0.491 |
| 53 | 53 | 0.386 |
| 54 | 54 | 0.575 |
| 55 | 55 | 0.929 |
| 56 | 56 | 0.376 |
| 57 | 57 | 0.532 |
| 58 | 58 | 0.988 |
| 59 | 59 | 0.056 |
| 6 | 6 | 0.186 |
| 60 | 60 | 0.23 |
| 61 | 61 | 0.616 |
| 62 | 62 | 0.898 |
| 63 | 63 | 0.259 |
| 64 | 64 | 0.239 |
| 65 | 65 | 0.161 |
| 66 | 66 | 0.734 |
| 67 | 67 | 0.599 |
| 68 | 68 | 0.809 |
| 69 | 69 | 0.141 |
| 7 | 7 | 0.527 |
| 70 | 70 | 0.00644 |
| 71 | 71 | 0.262 |
| 72 | 72 | 0.956 |
| 73 | 73 | 0.0127 |
| 74 | 74 | 0.0261 |
| 75 | 75 | 0.145 |
| 76 | 76 | 0.916 |
| 77 | 77 | 0.00456 |
| 78 | 78 | 0.0568 |
| 79 | 79 | 0.544 |
| 8 | 8 | 0.246 |
| 80 | 80 | 0.984 |
| 81 | 81 | 0.585 |
| 82 | 82 | 0.681 |
| 83 | 83 | 0.513 |
| 84 | 84 | 0.899 |
| 85 | 85 | 0.492 |
| 86 | 86 | 0.785 |
| 87 | 87 | 0.00589 |
| 88 | 88 | 0.473 |
| 89 | 89 | 0.0912 |
| 9 | 9 | 0.672 |
| 90 | 90 | 0.133 |
| 91 | 91 | 0.617 |
| 92 | 92 | 0.74 |
| 93 | 93 | 0.666 |
| 94 | 94 | 0.686 |
| 95 | 95 | 0.031 |
| 96 | 96 | 0.53 |
| 97 | 97 | 0.726 |
| 98 | 98 | 0.36 |
| 99 | 99 | 0.0205 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12062
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
