FF:11467-119B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004831 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008407;DRR009279;DRZ000704;DRZ002089;DRZ012054;DRZ013439 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000139 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11467-119B9 | |id=FF:11467-119B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000139 | ||
|is_obsolete= | |||
|library_id=CNhs11052 | |||
|library_id_phase_based=2:CNhs11052 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11467 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11467 | |||
|name=Preadipocyte - breast, donor1 | |name=Preadipocyte - breast, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11052,LSID722,release008,COMPLETED | |profile_hcage=CNhs11052,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0481260500124022,0,0,0,0,-0.0640659300615817,0,0.0220212084677838,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0570709103236233,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0962521000248044,0,0.13957901062898,0,0.0962521000248044,0,0,0,0,0,0,0.0632820704154657,0,0,0,0.0962521000248044,0,0,0,-0.0969923612426051,0,0,-0.00109152718829258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0481260500124022,0,0,0,0,0,-0.0727743948712228,0,0,0,-0.0396661218496155,0.00742053001133805,0,0.509601710960439,0,0,-0.0980353512377064,-0.090351150788493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00887650239416105,0,0,0,0.151900063550973,0.470933166149418,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0962521000248044,-0.0980353512377064,0,0,0,0,0.0962521000248044,0,0,0,0.509601710960439,0,0,-0.0055518625790284,0,-0.174702878090711,-0.143515142523472,0,0,-0.252102829184204,0,0.0962521000248044,0,0,0,0,0,0.0962521000248044,0,0.49774811536601,0,0.424511772776694,0,0,0.0489618488093676,0,0.205350353063129,0.0448802845523252,0,0.138675930009777,0.23103907958393,0,0,0,0,0.204683655031684,0,-0.0246273837689363,0.0922740147331826,0,0.195295204715675,0.12818952416422,0,0,0,0.180274960542616,0.245672235720568,0,0,0.306967666567571,0.131584372598628,0,0,0.25960376390418,0,0.146775174651369,0.298308745148672,0,-0.130278292421107,0,0,0,0,0,0,0,0,0,0,0,0.41592532136599,0.0689746754544162,0,0,0,0,-0.00173073425993964,0,0,-0.373286155956567,0.0184061807056992,-0.05929293013453,-0.324607519030121,0,-0.0607627143033772,-0.0738735967294177,-0.295721766105031,-0.00587022778655699,0.0275923336854614,0.284942604816161,0.0670929143840384,-0.190911629184629,-0.276670918153573,-0.0752656513273547,-0.0799633945139917,-0.00114308486103021,0.280604341242851,-0.250508939656247,0,0,0.053473469086472,0.455769141861281,0,0,0.0814993173840906,0.0191725591555565,0.122966823618706,-0.14778629539629,6.9356347299765e-06,0.0397985335595845,-0.0395325284566706,0.114177578964269,-0.0637395691258591,0.408495364772147,0.0698715768122948,0,-0.000170006941149436,-0.051077894726976,-0.135263761651508,-0.519574073153875,0,0.141890520507594,0.282008254373364,0,0.0906725976579768,-0.139298274331748,0.0962521000248044,0.311159851866931,-0.069175519910973,0,0,0,0,0,-0.233356192871325,-0.0298904320697274,0.00877145115099126,0,-0.100525141806365,0.0307880603869662,-0.0786681476453795,0,-0.302230909077978,0,0,0.0502026408626473,0,-0.0843432196725357,0.26653820863869,0.00891910851714461,0.0148410600226761,-0.0584468268118252,0.0626381262650446,-0.136766619889462,0.0128804796996551,0.338339601209518,-0.0912482360833936,-0.0881268324752877,0.0529989313129131,0.625140933435813,-0.137784367301377,-0.0187392012412275,-0.0578721665892785,0,0.113486258079789,0,-0.0424286869053696,0,-0.484002858533485,-0.298806738766704,-0.19766236187415,0.016807643070099,0,-0.0180950715242425,-0.613136754717374,0,-0.135723143846782,-0.00929882377753025,0,0.0246270997219606,-0.260460101098169,0.113217500191426,0.0299500996864757,0,0.161230633966235,0,0,0.502024756316311,-0.0604818547077888,0,0.255841789136245,0.217291692354417,0.0698747254115153,-0.115971073434934,0,0,-0.208464472578311,0,0,0.151015846961381,0.0962521000248044,-0.0481692920977693,-0.253326341486756,0.0131072658923302,0.903857661440312,0,0,-0.00253358290857578,0,0.213698310464435,0,0,-0.114258155058122,-0.0203760129653284,0,0,0.241627012706536,0,0,0,0,0,0.0481260500124022,0,0,-0.126782731971977,-0.354833330216448,0,0,0,0,0,0.241627012706536,0.0962521000248044,-0.057661891533827,0,0.299383340661298,0.771739720009291,-0.008127905544822,0.227335099774312,0,0,0,0,0.0836599381078232,-0.203236562094724,0,-0.131862706497632,0,0,0,0,0.0888531932673885,0,0,0.0481260500124022,0,0.183896555652872,-0.0121681652309705,0,0,0,-0.180702301576986,0,0,0,0,-0.173801384152688,0,0,0.224525228129346,0,-0.0779214048933625,-0.0815818795468414,0,-0.105857479560935,0.286671911561766,-0.483125734080648,0,0.0962521000248044,-0.261347131789888,0,0.25336837638828,0.0665259842506702,0,0,-0.0209247759461169,0,0,0,0,0,0,-0.0393203293431557,0.120813506353268,0,0,0,0,0,0,0,0,0,0.0962521000248044,0.210053114683055,0.0827701263980895,0.0962521000248044,0,0,0,0,0,0,-0.0241060230789031,0.0423081100301995,0,0,0,0,0,0,0,0,0.00349838470276653,0,0,0,0,0,-0.0969923612426051,0,0,0,0.0962521000248044,-0.564807121153884,0,0,0.0220212084677838,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0516750970211522,0.395119716998848,0,0,0,0,0,0,0,-0.178581198181286,0,0,0,0,-0.113884373708977,0,0,0,0.13683062791738,0,-0.0640659300615817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338428549233817,0.240298008378241,0.0311956918567471,-0.0802147993350672,0,0,-0.014010419925835,0,0,0,0,0,0,-0.031340424028527,0.0817110267436006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874970915283,-0.0132418774725126,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.043906759788124,0,0,0,0,0,0,-0.112982657600109,0.361499278727243,-0.0197443992339685,0,0,0,0.120790685242912,0.0962521000248044,0,0,0,0.283575128031831,0,0,0,0,0,0,0,0,0.0962521000248044,0,0,0.0481260500124022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0570709103236233,0,0,0,0,0,0,0,0,0,0,0,0,0.0874970915283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0141146867369856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.116834129632239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104172844010044,0,0,0,0,0,0,0,0,0.0962521000248044,0,0,0,0,-0.0482220752390542,0,0.0906175508265728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1749941830566,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.0962521000248044,0,0,0,0.69633235114438,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=8.6 | |rna_weight_ug=8.6 | ||
|sample_age=52 | |sample_age=52 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=F-BR-F | |sample_cell_catalog=F-BR-F | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.45357951177983e-228!GO:0005737;cytoplasm;6.34588084008397e-166!GO:0043231;intracellular membrane-bound organelle;2.44089246041405e-143!GO:0043226;organelle;2.87937355041006e-143!GO:0043227;membrane-bound organelle;2.87937355041006e-143!GO:0043229;intracellular organelle;7.03130308125769e-143!GO:0044444;cytoplasmic part;3.67741430173935e-131!GO:0044422;organelle part;2.46797004924068e-103!GO:0044446;intracellular organelle part;5.80454154384823e-102!GO:0032991;macromolecular complex;9.94618075501168e-71!GO:0005515;protein binding;6.10901158072208e-68!GO:0030529;ribonucleoprotein complex;3.44955715305626e-67!GO:0044238;primary metabolic process;7.4497301708695e-67!GO:0044237;cellular metabolic process;1.08567951230462e-66!GO:0043170;macromolecule metabolic process;2.4490863312029e-59!GO:0005739;mitochondrion;3.81023788171814e-57!GO:0043233;organelle lumen;3.65551806688282e-56!GO:0031974;membrane-enclosed lumen;3.65551806688282e-56!GO:0031090;organelle membrane;6.06783223086158e-51!GO:0044428;nuclear part;2.31614694808874e-49!GO:0003723;RNA binding;4.32099888080385e-48!GO:0019538;protein metabolic process;1.67123870317887e-43!GO:0015031;protein transport;3.88230713007053e-42!GO:0005840;ribosome;1.01371860660098e-41!GO:0033036;macromolecule localization;6.03027986289061e-41!GO:0005634;nucleus;9.11717368802951e-41!GO:0006412;translation;3.48316265584543e-40!GO:0045184;establishment of protein localization;2.54611682629537e-39!GO:0009058;biosynthetic process;7.95895433470003e-39!GO:0008104;protein localization;1.89232612500244e-38!GO:0044429;mitochondrial part;2.44223116165845e-38!GO:0044260;cellular macromolecule metabolic process;2.75295489211086e-38!GO:0044267;cellular protein metabolic process;1.42329196924386e-37!GO:0003735;structural constituent of ribosome;5.4980694681531e-37!GO:0016043;cellular component organization and biogenesis;1.2138236818266e-36!GO:0006396;RNA processing;1.64276146198862e-34!GO:0044249;cellular biosynthetic process;4.33263333507903e-34!GO:0043234;protein complex;5.3771744996047e-34!GO:0005829;cytosol;6.56165195445474e-34!GO:0031967;organelle envelope;6.57182731206561e-34!GO:0031975;envelope;1.5020573068465e-33!GO:0009059;macromolecule biosynthetic process;3.30537969180132e-33!GO:0033279;ribosomal subunit;8.48079427907926e-32!GO:0046907;intracellular transport;8.6608367383111e-32!GO:0031981;nuclear lumen;8.99744097666409e-31!GO:0010467;gene expression;1.47578415797856e-29!GO:0016071;mRNA metabolic process;2.70999262532462e-28!GO:0043283;biopolymer metabolic process;2.89878735124695e-28!GO:0006886;intracellular protein transport;1.23846127308033e-27!GO:0008380;RNA splicing;1.17129228701167e-26!GO:0005740;mitochondrial envelope;5.51015751699843e-26!GO:0031966;mitochondrial membrane;1.05170683927216e-24!GO:0006397;mRNA processing;1.71767074787147e-24!GO:0005783;endoplasmic reticulum;5.33275709913324e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.86038719906144e-23!GO:0019866;organelle inner membrane;2.39655089422139e-23!GO:0005743;mitochondrial inner membrane;9.83132065310115e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.36485419135781e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.27760916903103e-22!GO:0012505;endomembrane system;2.38785895898446e-21!GO:0065003;macromolecular complex assembly;5.70723851470378e-21!GO:0006119;oxidative phosphorylation;7.77287052490893e-21!GO:0006457;protein folding;3.95378563162361e-20!GO:0022607;cellular component assembly;1.97828507521436e-19!GO:0044432;endoplasmic reticulum part;3.057815877262e-19!GO:0005654;nucleoplasm;3.1296162430789e-19!GO:0044455;mitochondrial membrane part;5.30099143282686e-19!GO:0005681;spliceosome;6.03543040656429e-19!GO:0051641;cellular localization;8.38022101179955e-19!GO:0051649;establishment of cellular localization;8.83517692741636e-19!GO:0044445;cytosolic part;2.8703855074452e-18!GO:0005794;Golgi apparatus;4.18735851769249e-18!GO:0048770;pigment granule;5.61104259966832e-18!GO:0042470;melanosome;5.61104259966832e-18!GO:0015934;large ribosomal subunit;9.69141988636577e-17!GO:0048193;Golgi vesicle transport;2.4012453191317e-16!GO:0044451;nucleoplasm part;6.06870516787505e-16!GO:0008134;transcription factor binding;6.40577525308321e-16!GO:0015935;small ribosomal subunit;7.95896733898257e-16!GO:0006996;organelle organization and biogenesis;9.13066899621823e-16!GO:0016874;ligase activity;1.26088194503202e-15!GO:0006512;ubiquitin cycle;1.64443356736497e-15!GO:0051186;cofactor metabolic process;2.34582081066112e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.634965989599e-15!GO:0016462;pyrophosphatase activity;4.33298355191981e-15!GO:0005746;mitochondrial respiratory chain;4.60166252389532e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;5.18150325478825e-15!GO:0031980;mitochondrial lumen;5.27893367725003e-15!GO:0005759;mitochondrial matrix;5.27893367725003e-15!GO:0022618;protein-RNA complex assembly;1.25580686857083e-14!GO:0017111;nucleoside-triphosphatase activity;1.96593482548887e-14!GO:0051082;unfolded protein binding;2.79627704733196e-14!GO:0043228;non-membrane-bound organelle;7.81489817078706e-14!GO:0043232;intracellular non-membrane-bound organelle;7.81489817078706e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.9546098877093e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.00961135818308e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53331716347419e-13!GO:0016192;vesicle-mediated transport;1.75409529842497e-13!GO:0006605;protein targeting;1.92331603222585e-13!GO:0019941;modification-dependent protein catabolic process;2.04315646123641e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.04315646123641e-13!GO:0044257;cellular protein catabolic process;2.17466786372178e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.57439819912489e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.92221957049603e-13!GO:0003954;NADH dehydrogenase activity;3.92221957049603e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.92221957049603e-13!GO:0000166;nucleotide binding;4.15983191094867e-13!GO:0005789;endoplasmic reticulum membrane;5.20069240300063e-13!GO:0005730;nucleolus;5.7676349149245e-13!GO:0043285;biopolymer catabolic process;6.44149351828207e-13!GO:0044265;cellular macromolecule catabolic process;6.5608837451275e-13!GO:0008135;translation factor activity, nucleic acid binding;7.78732828234958e-13!GO:0000502;proteasome complex (sensu Eukaryota);8.3992509273659e-13!GO:0005761;mitochondrial ribosome;1.7602610160095e-12!GO:0000313;organellar ribosome;1.7602610160095e-12!GO:0030163;protein catabolic process;3.74031153097789e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.27749950292024e-12!GO:0006732;coenzyme metabolic process;4.67448860941557e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.93361873840877e-12!GO:0042773;ATP synthesis coupled electron transport;9.93361873840877e-12!GO:0009057;macromolecule catabolic process;1.1945371268653e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25627462308634e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.51603490385876e-11!GO:0016070;RNA metabolic process;1.55401505192518e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.58295010347996e-11!GO:0045271;respiratory chain complex I;1.58295010347996e-11!GO:0005747;mitochondrial respiratory chain complex I;1.58295010347996e-11!GO:0005793;ER-Golgi intermediate compartment;3.23061200925083e-11!GO:0044248;cellular catabolic process;3.46572297063563e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.65980655655458e-11!GO:0003676;nucleic acid binding;6.70555897436631e-11!GO:0009055;electron carrier activity;8.18241472732903e-11!GO:0003712;transcription cofactor activity;9.68097140936191e-11!GO:0043412;biopolymer modification;1.71474832994295e-10!GO:0012501;programmed cell death;2.81432099944547e-10!GO:0009259;ribonucleotide metabolic process;4.66786866822114e-10!GO:0006915;apoptosis;6.10618183863402e-10!GO:0003743;translation initiation factor activity;6.21222306004195e-10!GO:0008565;protein transporter activity;1.43950659975029e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.48784541750488e-09!GO:0009150;purine ribonucleotide metabolic process;1.64369463663964e-09!GO:0006413;translational initiation;1.69443685648741e-09!GO:0006464;protein modification process;1.72269451401936e-09!GO:0048523;negative regulation of cellular process;1.82116501527234e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.02829448226828e-09!GO:0000375;RNA splicing, via transesterification reactions;2.02829448226828e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.02829448226828e-09!GO:0006163;purine nucleotide metabolic process;2.59462922226661e-09!GO:0008219;cell death;2.59757178525842e-09!GO:0016265;death;2.59757178525842e-09!GO:0006446;regulation of translational initiation;2.64688709972073e-09!GO:0017076;purine nucleotide binding;3.79768594314809e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.04348228685992e-09!GO:0032553;ribonucleotide binding;4.08622299316821e-09!GO:0032555;purine ribonucleotide binding;4.08622299316821e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.26734059268066e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.26734059268066e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.71675385975154e-09!GO:0006259;DNA metabolic process;6.30853834688102e-09!GO:0005635;nuclear envelope;6.33965364894916e-09!GO:0008639;small protein conjugating enzyme activity;6.62886796115923e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.28542036410525e-09!GO:0009141;nucleoside triphosphate metabolic process;7.91759410674282e-09!GO:0009260;ribonucleotide biosynthetic process;8.40739332506408e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.41607907710998e-09!GO:0004842;ubiquitin-protein ligase activity;1.12892333064391e-08!GO:0031965;nuclear membrane;1.20083573869315e-08!GO:0019787;small conjugating protein ligase activity;1.22756433103617e-08!GO:0006164;purine nucleotide biosynthetic process;1.41006478572172e-08!GO:0005788;endoplasmic reticulum lumen;1.74362588219241e-08!GO:0015986;ATP synthesis coupled proton transport;1.98264637670972e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.98264637670972e-08!GO:0005768;endosome;2.02494409421522e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.10033896825522e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.10033896825522e-08!GO:0003714;transcription corepressor activity;2.21394909555433e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.76016925313881e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.78593370576737e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.78593370576737e-08!GO:0030120;vesicle coat;3.43240969061612e-08!GO:0030662;coated vesicle membrane;3.43240969061612e-08!GO:0044431;Golgi apparatus part;3.74461846207599e-08!GO:0016604;nuclear body;3.7638460539156e-08!GO:0042254;ribosome biogenesis and assembly;4.01216025005321e-08!GO:0016491;oxidoreductase activity;5.7624954618787e-08!GO:0046034;ATP metabolic process;5.84242382439882e-08!GO:0006913;nucleocytoplasmic transport;5.91565248622278e-08!GO:0009060;aerobic respiration;8.27305626144169e-08!GO:0005773;vacuole;9.77514712914423e-08!GO:0051169;nuclear transport;9.91769166300678e-08!GO:0048519;negative regulation of biological process;1.09175711998444e-07!GO:0051188;cofactor biosynthetic process;1.11363964115259e-07!GO:0006461;protein complex assembly;1.12281294389745e-07!GO:0043687;post-translational protein modification;1.19777845305403e-07!GO:0016881;acid-amino acid ligase activity;1.2663216316145e-07!GO:0048475;coated membrane;1.2693697505855e-07!GO:0030117;membrane coat;1.2693697505855e-07!GO:0045333;cellular respiration;1.62992622604443e-07!GO:0016607;nuclear speck;1.87868507999919e-07!GO:0019829;cation-transporting ATPase activity;1.92468353415037e-07!GO:0006399;tRNA metabolic process;2.14498420788236e-07!GO:0044453;nuclear membrane part;2.14498420788236e-07!GO:0016564;transcription repressor activity;2.37870691699142e-07!GO:0016887;ATPase activity;2.41131358822651e-07!GO:0017038;protein import;2.51319581154698e-07!GO:0006754;ATP biosynthetic process;2.72820984138175e-07!GO:0006753;nucleoside phosphate metabolic process;2.72820984138175e-07!GO:0042623;ATPase activity, coupled;2.9548779539771e-07!GO:0008654;phospholipid biosynthetic process;3.64764284509371e-07!GO:0006366;transcription from RNA polymerase II promoter;4.03214717196667e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.50870062687161e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.50870062687161e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.50870062687161e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.54331632715738e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.58853477591466e-07!GO:0009056;catabolic process;7.94861302503525e-07!GO:0065002;intracellular protein transport across a membrane;8.07878998668039e-07!GO:0043038;amino acid activation;9.73660177602871e-07!GO:0006418;tRNA aminoacylation for protein translation;9.73660177602871e-07!GO:0043039;tRNA aminoacylation;9.73660177602871e-07!GO:0000323;lytic vacuole;1.07867682730076e-06!GO:0005764;lysosome;1.07867682730076e-06!GO:0006974;response to DNA damage stimulus;1.10427726366802e-06!GO:0007005;mitochondrion organization and biogenesis;1.1091572267709e-06!GO:0003924;GTPase activity;1.36919073818973e-06!GO:0005798;Golgi-associated vesicle;1.38644432120289e-06!GO:0005524;ATP binding;1.60873586589338e-06!GO:0043069;negative regulation of programmed cell death;1.76212055374551e-06!GO:0006099;tricarboxylic acid cycle;1.7776769270649e-06!GO:0046356;acetyl-CoA catabolic process;1.7776769270649e-06!GO:0051187;cofactor catabolic process;1.87051720780031e-06!GO:0032559;adenyl ribonucleotide binding;1.9768546526997e-06!GO:0008361;regulation of cell size;2.0368388343537e-06!GO:0051789;response to protein stimulus;2.06007618982217e-06!GO:0006986;response to unfolded protein;2.06007618982217e-06!GO:0030554;adenyl nucleotide binding;2.19457634479931e-06!GO:0009109;coenzyme catabolic process;2.54741316517814e-06!GO:0050794;regulation of cellular process;2.73228727616843e-06!GO:0016049;cell growth;2.81210348189234e-06!GO:0031988;membrane-bound vesicle;2.87676532440551e-06!GO:0044440;endosomal part;3.02138786855843e-06!GO:0010008;endosome membrane;3.02138786855843e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.24261823961147e-06!GO:0043066;negative regulation of apoptosis;3.35783131974162e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.68700421891463e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.11829261321891e-06!GO:0006752;group transfer coenzyme metabolic process;4.55079987480593e-06!GO:0005770;late endosome;4.69396903691186e-06!GO:0016853;isomerase activity;5.09097547041384e-06!GO:0005643;nuclear pore;5.96046235931523e-06!GO:0006084;acetyl-CoA metabolic process;6.32102451102849e-06!GO:0009108;coenzyme biosynthetic process;6.70390643600228e-06!GO:0000139;Golgi membrane;6.79317632787554e-06!GO:0009117;nucleotide metabolic process;9.07919785842675e-06!GO:0008026;ATP-dependent helicase activity;9.61816952919389e-06!GO:0032446;protein modification by small protein conjugation;1.03319375565455e-05!GO:0043067;regulation of programmed cell death;1.07648259659955e-05!GO:0051246;regulation of protein metabolic process;1.0909047673639e-05!GO:0000151;ubiquitin ligase complex;1.26397676621211e-05!GO:0042981;regulation of apoptosis;1.26749512625007e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.33967904663268e-05!GO:0009719;response to endogenous stimulus;1.33981202578364e-05!GO:0016567;protein ubiquitination;1.36295873979516e-05!GO:0045259;proton-transporting ATP synthase complex;1.39282144225929e-05!GO:0007049;cell cycle;1.51871000530001e-05!GO:0031252;leading edge;1.57100764534375e-05!GO:0031982;vesicle;1.60207259130091e-05!GO:0001558;regulation of cell growth;1.69624082033311e-05!GO:0006613;cotranslational protein targeting to membrane;1.69624082033311e-05!GO:0006916;anti-apoptosis;1.75741534584912e-05!GO:0004386;helicase activity;1.93631924629836e-05!GO:0031324;negative regulation of cellular metabolic process;1.99517002562629e-05!GO:0031410;cytoplasmic vesicle;2.11660720111747e-05!GO:0006091;generation of precursor metabolites and energy;2.19237904865595e-05!GO:0046474;glycerophospholipid biosynthetic process;2.30652751253793e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.50997982560152e-05!GO:0005791;rough endoplasmic reticulum;3.16697310053111e-05!GO:0005667;transcription factor complex;3.18414893576186e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.22033954064736e-05!GO:0005525;GTP binding;3.23141594366969e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.4885023434277e-05!GO:0045454;cell redox homeostasis;3.5378879565328e-05!GO:0045786;negative regulation of progression through cell cycle;3.64832787428793e-05!GO:0046930;pore complex;3.73278837939276e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.74620555785392e-05!GO:0006281;DNA repair;3.81234305854236e-05!GO:0030133;transport vesicle;4.50948824024248e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.53188289303519e-05!GO:0016787;hydrolase activity;5.54363449231385e-05!GO:0016859;cis-trans isomerase activity;6.65436456358517e-05!GO:0005905;coated pit;6.80183254886026e-05!GO:0030867;rough endoplasmic reticulum membrane;6.80183254886026e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.08513419358493e-05!GO:0006364;rRNA processing;7.50421765022104e-05!GO:0051170;nuclear import;7.58941278048678e-05!GO:0006403;RNA localization;8.07598225822247e-05!GO:0019867;outer membrane;8.36452866855827e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.66531836166518e-05!GO:0050657;nucleic acid transport;9.23567916198599e-05!GO:0051236;establishment of RNA localization;9.23567916198599e-05!GO:0050658;RNA transport;9.23567916198599e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.56873661173297e-05!GO:0006606;protein import into nucleus;0.000103414513236172!GO:0016072;rRNA metabolic process;0.000105780254116199!GO:0000245;spliceosome assembly;0.00010901081458644!GO:0005762;mitochondrial large ribosomal subunit;0.000113281653162711!GO:0000315;organellar large ribosomal subunit;0.000113281653162711!GO:0050789;regulation of biological process;0.000113504271398487!GO:0003724;RNA helicase activity;0.000127035640823242!GO:0051726;regulation of cell cycle;0.000140306560417039!GO:0033116;ER-Golgi intermediate compartment membrane;0.000144589100856025!GO:0008610;lipid biosynthetic process;0.000148834249498244!GO:0031968;organelle outer membrane;0.00015391407505334!GO:0015980;energy derivation by oxidation of organic compounds;0.000158016058055961!GO:0032561;guanyl ribonucleotide binding;0.000158460611072764!GO:0019001;guanyl nucleotide binding;0.000158460611072764!GO:0004298;threonine endopeptidase activity;0.000170069134644918!GO:0000074;regulation of progression through cell cycle;0.000181379129317607!GO:0006612;protein targeting to membrane;0.000186328048879907!GO:0009892;negative regulation of metabolic process;0.000211858657529848!GO:0005048;signal sequence binding;0.000218725291002612!GO:0043566;structure-specific DNA binding;0.000219218471213691!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222827716549738!GO:0007050;cell cycle arrest;0.000225779180343708!GO:0046489;phosphoinositide biosynthetic process;0.000243415161026888!GO:0030663;COPI coated vesicle membrane;0.000250788684945254!GO:0030126;COPI vesicle coat;0.000250788684945254!GO:0043021;ribonucleoprotein binding;0.000330239465911297!GO:0003697;single-stranded DNA binding;0.000333259323643259!GO:0006650;glycerophospholipid metabolic process;0.00034233357080445!GO:0004576;oligosaccharyl transferase activity;0.000346993106551486!GO:0003713;transcription coactivator activity;0.000362479681113124!GO:0030029;actin filament-based process;0.000369593029479772!GO:0008250;oligosaccharyl transferase complex;0.000429128429723254!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0004334533014758!GO:0015399;primary active transmembrane transporter activity;0.0004334533014758!GO:0046467;membrane lipid biosynthetic process;0.0004446848098406!GO:0030137;COPI-coated vesicle;0.000452444229976382!GO:0016044;membrane organization and biogenesis;0.000464600871107703!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000472094864457737!GO:0006891;intra-Golgi vesicle-mediated transport;0.000482607132233207!GO:0005885;Arp2/3 protein complex;0.000504702927750341!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000703823908882088!GO:0006839;mitochondrial transport;0.000827329643694871!GO:0044262;cellular carbohydrate metabolic process;0.000856815797890194!GO:0016563;transcription activator activity;0.000863973767307683!GO:0000314;organellar small ribosomal subunit;0.000865090249100473!GO:0005763;mitochondrial small ribosomal subunit;0.000865090249100473!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000884497695314159!GO:0051427;hormone receptor binding;0.00088746641437888!GO:0005769;early endosome;0.000900776355385589!GO:0051920;peroxiredoxin activity;0.00091301487599824!GO:0016481;negative regulation of transcription;0.000919819517806814!GO:0005741;mitochondrial outer membrane;0.000922695705628429!GO:0006793;phosphorus metabolic process;0.000988652793863453!GO:0006796;phosphate metabolic process;0.000988652793863453!GO:0022402;cell cycle process;0.000990903196944803!GO:0040008;regulation of growth;0.00102411369039287!GO:0018196;peptidyl-asparagine modification;0.00102607945965067!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102607945965067!GO:0016779;nucleotidyltransferase activity;0.00105059160863499!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00105480201301445!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131377587862656!GO:0051028;mRNA transport;0.00133256647210162!GO:0043623;cellular protein complex assembly;0.0014095920428557!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00146718713062049!GO:0008186;RNA-dependent ATPase activity;0.00149370680901921!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00152325632563293!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0015440874124664!GO:0035257;nuclear hormone receptor binding;0.00154504571453592!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00157571071053161!GO:0043681;protein import into mitochondrion;0.00160828111507941!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00171074301288815!GO:0016740;transferase activity;0.00172072466910935!GO:0016310;phosphorylation;0.00187376131816025!GO:0006979;response to oxidative stress;0.00188328814719488!GO:0004177;aminopeptidase activity;0.00189925077736206!GO:0007006;mitochondrial membrane organization and biogenesis;0.00190573450272885!GO:0008092;cytoskeletal protein binding;0.0021161889564018!GO:0006497;protein amino acid lipidation;0.00213884545500694!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0022416304816401!GO:0031072;heat shock protein binding;0.00228936840736855!GO:0030658;transport vesicle membrane;0.00248824903073661!GO:0006643;membrane lipid metabolic process;0.00250636718092994!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00257520713442848!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00263618329875172!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00263618329875172!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00263618329875172!GO:0007243;protein kinase cascade;0.0026585583811155!GO:0006626;protein targeting to mitochondrion;0.00269083432412576!GO:0043284;biopolymer biosynthetic process;0.00279658478647509!GO:0016197;endosome transport;0.00287221880265952!GO:0009165;nucleotide biosynthetic process;0.00301498214541254!GO:0048500;signal recognition particle;0.00304227172101001!GO:0006383;transcription from RNA polymerase III promoter;0.00307307512764285!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00307414702783515!GO:0006892;post-Golgi vesicle-mediated transport;0.00310260052756572!GO:0030384;phosphoinositide metabolic process;0.0031256876225746!GO:0016126;sterol biosynthetic process;0.00322408768981733!GO:0005583;fibrillar collagen;0.00335414885586266!GO:0019752;carboxylic acid metabolic process;0.00339639795419236!GO:0019843;rRNA binding;0.00340843294231235!GO:0030134;ER to Golgi transport vesicle;0.00346868118182048!GO:0030659;cytoplasmic vesicle membrane;0.00351624222935727!GO:0030027;lamellipodium;0.00362756874688996!GO:0003899;DNA-directed RNA polymerase activity;0.00362756874688996!GO:0004004;ATP-dependent RNA helicase activity;0.00366208140257674!GO:0043492;ATPase activity, coupled to movement of substances;0.00373081230680526!GO:0043433;negative regulation of transcription factor activity;0.00375193503212236!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00378644376252475!GO:0006082;organic acid metabolic process;0.00383527463363992!GO:0030127;COPII vesicle coat;0.00391936808849605!GO:0012507;ER to Golgi transport vesicle membrane;0.00391936808849605!GO:0030176;integral to endoplasmic reticulum membrane;0.00394403984998796!GO:0006414;translational elongation;0.00405901232193703!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00421735741629968!GO:0005813;centrosome;0.00430236734379967!GO:0045045;secretory pathway;0.00433996696837964!GO:0006506;GPI anchor biosynthetic process;0.00439874460149427!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00446502447148253!GO:0019899;enzyme binding;0.00453394927819815!GO:0042158;lipoprotein biosynthetic process;0.00454041864624163!GO:0048471;perinuclear region of cytoplasm;0.00468875489944557!GO:0048487;beta-tubulin binding;0.0048499836349173!GO:0051087;chaperone binding;0.00489177201953907!GO:0065009;regulation of a molecular function;0.00508533240201712!GO:0051168;nuclear export;0.0051305956054154!GO:0006260;DNA replication;0.00515240637934607!GO:0006509;membrane protein ectodomain proteolysis;0.00515240637934607!GO:0033619;membrane protein proteolysis;0.00515240637934607!GO:0031902;late endosome membrane;0.00516543393417652!GO:0030521;androgen receptor signaling pathway;0.00519180997615714!GO:0006644;phospholipid metabolic process;0.00523462022682511!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0015992;proton transport;0.0053067111194593!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0054222589546698!GO:0045047;protein targeting to ER;0.0054222589546698!GO:0030118;clathrin coat;0.00558102669926304!GO:0050811;GABA receptor binding;0.00573246396590024!GO:0019222;regulation of metabolic process;0.00573976194716134!GO:0006818;hydrogen transport;0.00586050018258844!GO:0007264;small GTPase mediated signal transduction;0.00599484234294267!GO:0030132;clathrin coat of coated pit;0.00612526520848504!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00614807524287205!GO:0051252;regulation of RNA metabolic process;0.0062149321195549!GO:0005815;microtubule organizing center;0.00627412315751237!GO:0006505;GPI anchor metabolic process;0.00636856265009521!GO:0005581;collagen;0.00645001621531511!GO:0046483;heterocycle metabolic process;0.00652043220703643!GO:0048522;positive regulation of cellular process;0.00669207518131576!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00688661571052534!GO:0030660;Golgi-associated vesicle membrane;0.00699344565236869!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00706412048295838!GO:0015002;heme-copper terminal oxidase activity;0.00706412048295838!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00706412048295838!GO:0004129;cytochrome-c oxidase activity;0.00706412048295838!GO:0003729;mRNA binding;0.00708436239081102!GO:0007034;vacuolar transport;0.00719458976729951!GO:0030880;RNA polymerase complex;0.00720983440920608!GO:0022890;inorganic cation transmembrane transporter activity;0.00729629834375646!GO:0009967;positive regulation of signal transduction;0.00746246926541638!GO:0016568;chromatin modification;0.00779011786126656!GO:0048468;cell development;0.00815134159720128!GO:0007040;lysosome organization and biogenesis;0.00815602391693128!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00836630193859252!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00901592645062797!GO:0005774;vacuolar membrane;0.00904547784021333!GO:0005869;dynactin complex;0.00922229714893708!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00923270893988606!GO:0000049;tRNA binding;0.00926740402837941!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00934676776038937!GO:0003690;double-stranded DNA binding;0.00949902340893264!GO:0008139;nuclear localization sequence binding;0.00967265927571891!GO:0007033;vacuole organization and biogenesis;0.00996102573510843!GO:0006790;sulfur metabolic process;0.010212400097662!GO:0065004;protein-DNA complex assembly;0.0105681678033701!GO:0065007;biological regulation;0.0107101368247999!GO:0045792;negative regulation of cell size;0.0110766126346249!GO:0035258;steroid hormone receptor binding;0.0111869322108494!GO:0016408;C-acyltransferase activity;0.0111869322108494!GO:0003711;transcription elongation regulator activity;0.0115247557190643!GO:0017166;vinculin binding;0.0119294426489339!GO:0003746;translation elongation factor activity;0.0119478780935578!GO:0008312;7S RNA binding;0.0120200149468427!GO:0044433;cytoplasmic vesicle part;0.012175217763442!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0125556039826551!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0125556039826551!GO:0000059;protein import into nucleus, docking;0.0125556039826551!GO:0043488;regulation of mRNA stability;0.0125556039826551!GO:0043487;regulation of RNA stability;0.0125556039826551!GO:0044255;cellular lipid metabolic process;0.012572086480114!GO:0001726;ruffle;0.0129969232911724!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0132182346121466!GO:0030308;negative regulation of cell growth;0.0137479445892445!GO:0051329;interphase of mitotic cell cycle;0.0142917984350837!GO:0051287;NAD binding;0.0142917984350837!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142917984350837!GO:0000428;DNA-directed RNA polymerase complex;0.0142917984350837!GO:0006323;DNA packaging;0.0147119054656153!GO:0000096;sulfur amino acid metabolic process;0.0148692403029168!GO:0008180;signalosome;0.0149618842044301!GO:0016363;nuclear matrix;0.0150303183662765!GO:0016860;intramolecular oxidoreductase activity;0.0151210190535969!GO:0051540;metal cluster binding;0.0151210190535969!GO:0051536;iron-sulfur cluster binding;0.0151210190535969!GO:0001527;microfibril;0.0152041230717894!GO:0006778;porphyrin metabolic process;0.0153519546178955!GO:0033013;tetrapyrrole metabolic process;0.0153519546178955!GO:0005862;muscle thin filament tropomyosin;0.0162054256502771!GO:0006289;nucleotide-excision repair;0.0163328626184019!GO:0030518;steroid hormone receptor signaling pathway;0.0163328626184019!GO:0000339;RNA cap binding;0.0164907902074563!GO:0006695;cholesterol biosynthetic process;0.0172189041974311!GO:0006740;NADPH regeneration;0.0176125830406113!GO:0006098;pentose-phosphate shunt;0.0176125830406113!GO:0050662;coenzyme binding;0.0177305698089941!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0177305698089941!GO:0007021;tubulin folding;0.0177305698089941!GO:0007041;lysosomal transport;0.018180124985368!GO:0051325;interphase;0.0181975720108988!GO:0031901;early endosome membrane;0.0183879698619544!GO:0005595;collagen type XII;0.0183879698619544!GO:0012506;vesicle membrane;0.0183951754491924!GO:0006402;mRNA catabolic process;0.0188521102811653!GO:0050681;androgen receptor binding;0.0190818435205089!GO:0006352;transcription initiation;0.0190818435205089!GO:0005801;cis-Golgi network;0.0191855048723803!GO:0030503;regulation of cell redox homeostasis;0.0191855048723803!GO:0043022;ribosome binding;0.0191855048723803!GO:0016272;prefoldin complex;0.0194245784918506!GO:0005520;insulin-like growth factor binding;0.0200694759594194!GO:0015630;microtubule cytoskeleton;0.0201464895970196!GO:0007030;Golgi organization and biogenesis;0.0205979588216684!GO:0044452;nucleolar part;0.0206412320373086!GO:0006354;RNA elongation;0.020699722757945!GO:0044437;vacuolar part;0.0207521096084511!GO:0031418;L-ascorbic acid binding;0.0210027395359856!GO:0033559;unsaturated fatty acid metabolic process;0.0210027395359856!GO:0006636;unsaturated fatty acid biosynthetic process;0.0210027395359856!GO:0006595;polyamine metabolic process;0.021214876833061!GO:0044420;extracellular matrix part;0.0217308928177831!GO:0007160;cell-matrix adhesion;0.0219369681991378!GO:0000209;protein polyubiquitination;0.0220193802944337!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0220723708059662!GO:0035035;histone acetyltransferase binding;0.0222740598153245!GO:0007010;cytoskeleton organization and biogenesis;0.0229657488697508!GO:0045892;negative regulation of transcription, DNA-dependent;0.0229657488697508!GO:0045936;negative regulation of phosphate metabolic process;0.0234505302788645!GO:0051539;4 iron, 4 sulfur cluster binding;0.0236250060033925!GO:0031589;cell-substrate adhesion;0.0237530637711799!GO:0032940;secretion by cell;0.02397472157591!GO:0033673;negative regulation of kinase activity;0.0240177400272644!GO:0006469;negative regulation of protein kinase activity;0.0240177400272644!GO:0031529;ruffle organization and biogenesis;0.0240287386258879!GO:0006118;electron transport;0.0241988355357616!GO:0046519;sphingoid metabolic process;0.0253168422493722!GO:0015631;tubulin binding;0.0257266856363743!GO:0006984;ER-nuclear signaling pathway;0.0259835464149653!GO:0051128;regulation of cellular component organization and biogenesis;0.026055801485155!GO:0022408;negative regulation of cell-cell adhesion;0.0261135435018746!GO:0031543;peptidyl-proline dioxygenase activity;0.0270452822094381!GO:0030125;clathrin vesicle coat;0.0277625763881097!GO:0030665;clathrin coated vesicle membrane;0.0277625763881097!GO:0008147;structural constituent of bone;0.0283849321338213!GO:0006779;porphyrin biosynthetic process;0.0284874825158967!GO:0033014;tetrapyrrole biosynthetic process;0.0284874825158967!GO:0030041;actin filament polymerization;0.0292065278663567!GO:0008033;tRNA processing;0.0293471460124157!GO:0003779;actin binding;0.0297100690598972!GO:0005586;collagen type III;0.0298129087269359!GO:0008652;amino acid biosynthetic process;0.0298266143907325!GO:0005765;lysosomal membrane;0.0302483785131494!GO:0006749;glutathione metabolic process;0.0304228956686683!GO:0006897;endocytosis;0.0304228956686683!GO:0010324;membrane invagination;0.0304228956686683!GO:0051348;negative regulation of transferase activity;0.0310081162124517!GO:0048144;fibroblast proliferation;0.0312198624714273!GO:0048145;regulation of fibroblast proliferation;0.0312198624714273!GO:0030119;AP-type membrane coat adaptor complex;0.0314514789974966!GO:0042168;heme metabolic process;0.0321494808615832!GO:0005832;chaperonin-containing T-complex;0.0328527011916128!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0340957582325311!GO:0009112;nucleobase metabolic process;0.0341722083998727!GO:0008632;apoptotic program;0.0348774831160927!GO:0030833;regulation of actin filament polymerization;0.0359528072012234!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0363890897550129!GO:0008320;protein transmembrane transporter activity;0.0366219165487328!GO:0044438;microbody part;0.0369387427800499!GO:0044439;peroxisomal part;0.0369387427800499!GO:0030865;cortical cytoskeleton organization and biogenesis;0.037420118629114!GO:0051098;regulation of binding;0.0375657426798535!GO:0001872;zymosan binding;0.0378589952384406!GO:0001878;response to yeast;0.0378589952384406!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394282540506157!GO:0000287;magnesium ion binding;0.0394282540506157!GO:0006672;ceramide metabolic process;0.0395175140525485!GO:0003923;GPI-anchor transamidase activity;0.0401403570739934!GO:0016255;attachment of GPI anchor to protein;0.0401403570739934!GO:0042765;GPI-anchor transamidase complex;0.0401403570739934!GO:0000278;mitotic cell cycle;0.0405300347316747!GO:0006739;NADP metabolic process;0.041060136517465!GO:0008047;enzyme activator activity;0.0416290364271251!GO:0015036;disulfide oxidoreductase activity;0.0419016356939857!GO:0003684;damaged DNA binding;0.042199993234!GO:0031625;ubiquitin protein ligase binding;0.042199993234!GO:0048146;positive regulation of fibroblast proliferation;0.0425515823628503!GO:0000082;G1/S transition of mitotic cell cycle;0.0427545892065975!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0428388366297574!GO:0045926;negative regulation of growth;0.0434209086803808!GO:0005684;U2-dependent spliceosome;0.0435221902729654!GO:0051101;regulation of DNA binding;0.0446211727972378!GO:0019798;procollagen-proline dioxygenase activity;0.0458565320582664!GO:0030508;thiol-disulfide exchange intermediate activity;0.0460291012266648!GO:0006635;fatty acid beta-oxidation;0.0460291012266648!GO:0008234;cysteine-type peptidase activity;0.0460423450770418!GO:0016251;general RNA polymerase II transcription factor activity;0.0460423450770418!GO:0004228;gelatinase A activity;0.0460930078890006!GO:0001955;blood vessel maturation;0.0460930078890006!GO:0001953;negative regulation of cell-matrix adhesion;0.046584446058807!GO:0030032;lamellipodium biogenesis;0.0473686152582094!GO:0045893;positive regulation of transcription, DNA-dependent;0.0475067738707019!GO:0006302;double-strand break repair;0.0484121409936557!GO:0030131;clathrin adaptor complex;0.0484687881808595!GO:0051716;cellular response to stimulus;0.0491026513576129!GO:0031903;microbody membrane;0.0491026513576129!GO:0005778;peroxisomal membrane;0.0491026513576129!GO:0043086;negative regulation of catalytic activity;0.0492824898761505!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0496766591770948!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0496766591770948!GO:0032984;macromolecular complex disassembly;0.0499577360395198 | |||
|sample_id=11467 | |sample_id=11467 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=TAL1_TCF{3,4,12}:2.30011083278;ESR1:2.13064480596;FOXL1:2.04688233633;MAFB:1.83541772759;HES1:1.83364961619;HIF1A:1.75590804371;NKX3-1:1.74034517097;EVI1:1.7188530671;XBP1:1.67620552687;GLI1..3:1.62110225193;NKX2-2,8:1.61822564336;UFEwm:1.4717402079;TEAD1:1.46581773686;GZF1:1.44157635792;IKZF1:1.42533079718;TEF:1.41070068418;ATF6:1.38076560952;MYBL2:1.35350515094;NFE2L1:1.34433741389;TP53:1.30409848634;ZNF238:1.23337026981;SPZ1:1.21700912473;HMX1:1.20462048763;TFAP4:1.20392499737;EBF1:1.19452279883;HOX{A4,D4}:1.19210945373;PAX1,9:1.1644392773;FOXA2:1.13703088849;EN1,2:1.11514012812;HOX{A6,A7,B6,B7}:1.09786137983;HOX{A5,B5}:1.05553309236;NFIX:1.0516822186;ALX4:1.0404466824;NANOG{mouse}:1.00786157961;SMAD1..7,9:1.00178608862;ZNF423:0.984223079687;RXRA_VDR{dimer}:0.943366576075;HBP1_HMGB_SSRP1_UBTF:0.933810835039;GCM1,2:0.925525861248;ADNP_IRX_SIX_ZHX:0.922386780606;HMGA1,2:0.891660231001;NR3C1:0.839358963399;HLF:0.827086880273;NKX3-2:0.819671031155;TLX1..3_NFIC{dimer}:0.81532720657;RXR{A,B,G}:0.810031326605;KLF4:0.79333487489;NHLH1,2:0.792342644448;NFATC1..3:0.764625236757;LHX3,4:0.759726964276;MTE{core}:0.756116140944;SRF:0.73098349857;NR6A1:0.705629330751;HAND1,2:0.651229214727;TBX4,5:0.630095927721;TFAP2B:0.624608182529;HSF1,2:0.619258845456;FOXO1,3,4:0.6049451768;PAX5:0.599002475608;MAZ:0.58713224577;HIC1:0.584556915003;GFI1B:0.570844628647;GTF2I:0.545420036737;bHLH_family:0.518831262138;NKX2-1,4:0.4936770375;ZNF148:0.490868271136;SOX17:0.479931487145;FOX{I1,J2}:0.467660490936;TFAP2{A,C}:0.451562033572;MEF2{A,B,C,D}:0.44479204827;TFCP2:0.437673167534;GTF2A1,2:0.384033313546;NFE2L2:0.368739566663;AR:0.354098189822;SOX5:0.336710428395;MYFfamily:0.316633070006;STAT2,4,6:0.299200815046;DBP:0.276661134264;ARID5B:0.249901415387;ZNF384:0.234001096985;TBP:0.225824881476;GATA4:0.16560573351;MZF1:0.164943689521;CEBPA,B_DDIT3:0.160869421382;MTF1:0.156998974215;POU6F1:0.152472588316;PATZ1:0.0975206427427;CDC5L:0.0894561610996;ZIC1..3:0.0685403240323;SREBF1,2:0.0680189777099;TLX2:0.0489085083643;FOX{D1,D2}:0.0348831418846;REST:0.0345114674332;TGIF1:0.00107967198847;AHR_ARNT_ARNT2:-0.000547257064979;PAX8:-0.00774659574681;BACH2:-0.015012547808;PRDM1:-0.0385580879406;T:-0.0444005458151;ELK1,4_GABP{A,B1}:-0.0571965272814;MYB:-0.0613790106189;HNF1A:-0.0671770835804;PAX2:-0.0764021874152;RREB1:-0.0985130513319;ZBTB6:-0.115627995227;FOSL2:-0.118772388983;PAX4:-0.135570573942;EP300:-0.145427230912;AIRE:-0.157565574876;MED-1{core}:-0.168765769352;XCPE1{core}:-0.169320207893;IRF1,2:-0.187470103515;OCT4_SOX2{dimer}:-0.18869837554;STAT5{A,B}:-0.189414295678;STAT1,3:-0.219695166665;FOS_FOS{B,L1}_JUN{B,D}:-0.236681484022;LEF1_TCF7_TCF7L1,2:-0.237587383556;SOX2:-0.257367115565;ZNF143:-0.260026354705;YY1:-0.307948933911;DMAP1_NCOR{1,2}_SMARC:-0.308691183197;NRF1:-0.316363899644;FOXP3:-0.32196893261;NFIL3:-0.323118861806;HNF4A_NR2F1,2:-0.32713811571;PAX6:-0.332414970387;EGR1..3:-0.332503910592;RFX1:-0.338013780198;BPTF:-0.341382585793;RUNX1..3:-0.3612383755;ETS1,2:-0.367929678411;ZBTB16:-0.372960848282;JUN:-0.39548932587;NFE2:-0.399066004229;FOXN1:-0.428552848981;HOXA9_MEIS1:-0.453782184413;CRX:-0.48370278481;ATF2:-0.49770536931;CREB1:-0.498624134122;ATF5_CREB3:-0.500486398088;SPI1:-0.50262300104;VSX1,2:-0.503425262861;FOXM1:-0.517372025891;IKZF2:-0.52401504462;NKX2-3_NKX2-5:-0.53160481101;NR5A1,2:-0.54515854766;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558839055526;FOXD3:-0.562409167311;NKX6-1,2:-0.574523271615;ESRRA:-0.576178428577;ELF1,2,4:-0.587036083886;TOPORS:-0.595075809783;POU3F1..4:-0.595598450695;ZFP161:-0.595793999432;GFI1:-0.597770192806;GATA6:-0.600885467333;NFKB1_REL_RELA:-0.609209537973;FOXQ1:-0.627369339093;CUX2:-0.635031141073;ZEB1:-0.640870802606;PPARG:-0.669669623123;ATF4:-0.69038591637;SPIB:-0.696702759628;PRRX1,2:-0.715632070173;TFDP1:-0.718593075545;NANOG:-0.729428024017;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730782596868;ONECUT1,2:-0.731190331761;SNAI1..3:-0.760691127783;NR1H4:-0.771199602098;FOX{F1,F2,J1}:-0.787657848441;POU5F1:-0.798940680155;PITX1..3:-0.809321549208;SP1:-0.819104994383;FOXP1:-0.844445629335;IRF7:-0.878392795424;RFX2..5_RFXANK_RFXAP:-0.899107963924;BREu{core}:-0.953509914614;SOX{8,9,10}:-0.99225073022;POU1F1:-0.994725278098;ALX1:-1.10508275849;LMO2:-1.10768367173;MYOD1:-1.13016284653;CDX1,2,4:-1.15691214693;RORA:-1.16758976972;E2F1..5:-1.19749310518;PAX3,7:-1.20897934447;RBPJ:-1.21225001129;PDX1:-1.24707589044;NFY{A,B,C}:-1.35958085044;PBX1:-1.7848191378;POU2F1..3:-2.11863237858 | |top_motifs=TAL1_TCF{3,4,12}:2.30011083278;ESR1:2.13064480596;FOXL1:2.04688233633;MAFB:1.83541772759;HES1:1.83364961619;HIF1A:1.75590804371;NKX3-1:1.74034517097;EVI1:1.7188530671;XBP1:1.67620552687;GLI1..3:1.62110225193;NKX2-2,8:1.61822564336;UFEwm:1.4717402079;TEAD1:1.46581773686;GZF1:1.44157635792;IKZF1:1.42533079718;TEF:1.41070068418;ATF6:1.38076560952;MYBL2:1.35350515094;NFE2L1:1.34433741389;TP53:1.30409848634;ZNF238:1.23337026981;SPZ1:1.21700912473;HMX1:1.20462048763;TFAP4:1.20392499737;EBF1:1.19452279883;HOX{A4,D4}:1.19210945373;PAX1,9:1.1644392773;FOXA2:1.13703088849;EN1,2:1.11514012812;HOX{A6,A7,B6,B7}:1.09786137983;HOX{A5,B5}:1.05553309236;NFIX:1.0516822186;ALX4:1.0404466824;NANOG{mouse}:1.00786157961;SMAD1..7,9:1.00178608862;ZNF423:0.984223079687;RXRA_VDR{dimer}:0.943366576075;HBP1_HMGB_SSRP1_UBTF:0.933810835039;GCM1,2:0.925525861248;ADNP_IRX_SIX_ZHX:0.922386780606;HMGA1,2:0.891660231001;NR3C1:0.839358963399;HLF:0.827086880273;NKX3-2:0.819671031155;TLX1..3_NFIC{dimer}:0.81532720657;RXR{A,B,G}:0.810031326605;KLF4:0.79333487489;NHLH1,2:0.792342644448;NFATC1..3:0.764625236757;LHX3,4:0.759726964276;MTE{core}:0.756116140944;SRF:0.73098349857;NR6A1:0.705629330751;HAND1,2:0.651229214727;TBX4,5:0.630095927721;TFAP2B:0.624608182529;HSF1,2:0.619258845456;FOXO1,3,4:0.6049451768;PAX5:0.599002475608;MAZ:0.58713224577;HIC1:0.584556915003;GFI1B:0.570844628647;GTF2I:0.545420036737;bHLH_family:0.518831262138;NKX2-1,4:0.4936770375;ZNF148:0.490868271136;SOX17:0.479931487145;FOX{I1,J2}:0.467660490936;TFAP2{A,C}:0.451562033572;MEF2{A,B,C,D}:0.44479204827;TFCP2:0.437673167534;GTF2A1,2:0.384033313546;NFE2L2:0.368739566663;AR:0.354098189822;SOX5:0.336710428395;MYFfamily:0.316633070006;STAT2,4,6:0.299200815046;DBP:0.276661134264;ARID5B:0.249901415387;ZNF384:0.234001096985;TBP:0.225824881476;GATA4:0.16560573351;MZF1:0.164943689521;CEBPA,B_DDIT3:0.160869421382;MTF1:0.156998974215;POU6F1:0.152472588316;PATZ1:0.0975206427427;CDC5L:0.0894561610996;ZIC1..3:0.0685403240323;SREBF1,2:0.0680189777099;TLX2:0.0489085083643;FOX{D1,D2}:0.0348831418846;REST:0.0345114674332;TGIF1:0.00107967198847;AHR_ARNT_ARNT2:-0.000547257064979;PAX8:-0.00774659574681;BACH2:-0.015012547808;PRDM1:-0.0385580879406;T:-0.0444005458151;ELK1,4_GABP{A,B1}:-0.0571965272814;MYB:-0.0613790106189;HNF1A:-0.0671770835804;PAX2:-0.0764021874152;RREB1:-0.0985130513319;ZBTB6:-0.115627995227;FOSL2:-0.118772388983;PAX4:-0.135570573942;EP300:-0.145427230912;AIRE:-0.157565574876;MED-1{core}:-0.168765769352;XCPE1{core}:-0.169320207893;IRF1,2:-0.187470103515;OCT4_SOX2{dimer}:-0.18869837554;STAT5{A,B}:-0.189414295678;STAT1,3:-0.219695166665;FOS_FOS{B,L1}_JUN{B,D}:-0.236681484022;LEF1_TCF7_TCF7L1,2:-0.237587383556;SOX2:-0.257367115565;ZNF143:-0.260026354705;YY1:-0.307948933911;DMAP1_NCOR{1,2}_SMARC:-0.308691183197;NRF1:-0.316363899644;FOXP3:-0.32196893261;NFIL3:-0.323118861806;HNF4A_NR2F1,2:-0.32713811571;PAX6:-0.332414970387;EGR1..3:-0.332503910592;RFX1:-0.338013780198;BPTF:-0.341382585793;RUNX1..3:-0.3612383755;ETS1,2:-0.367929678411;ZBTB16:-0.372960848282;JUN:-0.39548932587;NFE2:-0.399066004229;FOXN1:-0.428552848981;HOXA9_MEIS1:-0.453782184413;CRX:-0.48370278481;ATF2:-0.49770536931;CREB1:-0.498624134122;ATF5_CREB3:-0.500486398088;SPI1:-0.50262300104;VSX1,2:-0.503425262861;FOXM1:-0.517372025891;IKZF2:-0.52401504462;NKX2-3_NKX2-5:-0.53160481101;NR5A1,2:-0.54515854766;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558839055526;FOXD3:-0.562409167311;NKX6-1,2:-0.574523271615;ESRRA:-0.576178428577;ELF1,2,4:-0.587036083886;TOPORS:-0.595075809783;POU3F1..4:-0.595598450695;ZFP161:-0.595793999432;GFI1:-0.597770192806;GATA6:-0.600885467333;NFKB1_REL_RELA:-0.609209537973;FOXQ1:-0.627369339093;CUX2:-0.635031141073;ZEB1:-0.640870802606;PPARG:-0.669669623123;ATF4:-0.69038591637;SPIB:-0.696702759628;PRRX1,2:-0.715632070173;TFDP1:-0.718593075545;NANOG:-0.729428024017;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730782596868;ONECUT1,2:-0.731190331761;SNAI1..3:-0.760691127783;NR1H4:-0.771199602098;FOX{F1,F2,J1}:-0.787657848441;POU5F1:-0.798940680155;PITX1..3:-0.809321549208;SP1:-0.819104994383;FOXP1:-0.844445629335;IRF7:-0.878392795424;RFX2..5_RFXANK_RFXAP:-0.899107963924;BREu{core}:-0.953509914614;SOX{8,9,10}:-0.99225073022;POU1F1:-0.994725278098;ALX1:-1.10508275849;LMO2:-1.10768367173;MYOD1:-1.13016284653;CDX1,2,4:-1.15691214693;RORA:-1.16758976972;E2F1..5:-1.19749310518;PAX3,7:-1.20897934447;RBPJ:-1.21225001129;PDX1:-1.24707589044;NFY{A,B,C}:-1.35958085044;PBX1:-1.7848191378;POU2F1..3:-2.11863237858 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11467-119B9;search_select_hide=table117:FF:11467-119B9 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Preadipocyte - breast, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11052 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11052
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11052
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.819 |
| 10 | 10 | 0.512 |
| 100 | 100 | 0.516 |
| 101 | 101 | 0.536 |
| 102 | 102 | 0.0718 |
| 103 | 103 | 0.597 |
| 104 | 104 | 0.579 |
| 105 | 105 | 0.168 |
| 106 | 106 | 0.149 |
| 107 | 107 | 0.277 |
| 108 | 108 | 0.259 |
| 109 | 109 | 0.586 |
| 11 | 11 | 0.892 |
| 110 | 110 | 0.967 |
| 111 | 111 | 0.814 |
| 112 | 112 | 0.28 |
| 113 | 113 | 0.107 |
| 114 | 114 | 0.0394 |
| 115 | 115 | 0.151 |
| 116 | 116 | 0.198 |
| 117 | 117 | 0.603 |
| 118 | 118 | 0.174 |
| 119 | 119 | 0.952 |
| 12 | 12 | 0.474 |
| 120 | 120 | 0.95 |
| 121 | 121 | 0.651 |
| 122 | 122 | 0.394 |
| 123 | 123 | 0.0118 |
| 124 | 124 | 0.741 |
| 125 | 125 | 0.854 |
| 126 | 126 | 0.486 |
| 127 | 127 | 0.434 |
| 128 | 128 | 0.559 |
| 129 | 129 | 0.941 |
| 13 | 13 | 0.622 |
| 130 | 130 | 0.915 |
| 131 | 131 | 0.299 |
| 132 | 132 | 0.467 |
| 133 | 133 | 0.324 |
| 134 | 134 | 0.349 |
| 135 | 135 | 0.526 |
| 136 | 136 | 0.739 |
| 137 | 137 | 0.727 |
| 138 | 138 | 0.395 |
| 139 | 139 | 0.117 |
| 14 | 14 | 0.202 |
| 140 | 140 | 0.853 |
| 141 | 141 | 0.899 |
| 142 | 142 | 0.645 |
| 143 | 143 | 0.447 |
| 144 | 144 | 0.673 |
| 145 | 145 | 0.642 |
| 146 | 146 | 0.93 |
| 147 | 147 | 0.266 |
| 148 | 148 | 0.841 |
| 149 | 149 | 5.42627e-5 |
| 15 | 15 | 0.683 |
| 150 | 150 | 0.53 |
| 151 | 151 | 0.519 |
| 152 | 152 | 0.017 |
| 153 | 153 | 0.0322 |
| 154 | 154 | 0.944 |
| 155 | 155 | 0.00213 |
| 156 | 156 | 0.487 |
| 157 | 157 | 0.568 |
| 158 | 158 | 0.0217 |
| 159 | 159 | 0.414 |
| 16 | 16 | 0.0228 |
| 160 | 160 | 0.742 |
| 161 | 161 | 0.501 |
| 162 | 162 | 0.686 |
| 163 | 163 | 0.288 |
| 164 | 164 | 0.564 |
| 165 | 165 | 0.911 |
| 166 | 166 | 0.213 |
| 167 | 167 | 0.579 |
| 168 | 168 | 0.393 |
| 169 | 169 | 0.0351 |
| 17 | 17 | 0.5 |
| 18 | 18 | 0.0683 |
| 19 | 19 | 0.0162 |
| 2 | 2 | 0.382 |
| 20 | 20 | 0.321 |
| 21 | 21 | 0.472 |
| 22 | 22 | 0.21 |
| 23 | 23 | 0.0904 |
| 24 | 24 | 0.109 |
| 25 | 25 | 0.474 |
| 26 | 26 | 0.777 |
| 27 | 27 | 0.521 |
| 28 | 28 | 0.233 |
| 29 | 29 | 0.969 |
| 3 | 3 | 0.514 |
| 30 | 30 | 0.528 |
| 31 | 31 | 0.632 |
| 32 | 32 | 3.11035e-14 |
| 33 | 33 | 0.967 |
| 34 | 34 | 0.778 |
| 35 | 35 | 0.771 |
| 36 | 36 | 0.0477 |
| 37 | 37 | 0.111 |
| 38 | 38 | 0.474 |
| 39 | 39 | 0.161 |
| 4 | 4 | 0.874 |
| 40 | 40 | 0.278 |
| 41 | 41 | 0.78 |
| 42 | 42 | 0.629 |
| 43 | 43 | 0.202 |
| 44 | 44 | 0.818 |
| 45 | 45 | 0.774 |
| 46 | 46 | 0.558 |
| 47 | 47 | 0.921 |
| 48 | 48 | 0.943 |
| 49 | 49 | 0.68 |
| 5 | 5 | 0.348 |
| 50 | 50 | 0.905 |
| 51 | 51 | 0.488 |
| 52 | 52 | 0.576 |
| 53 | 53 | 0.106 |
| 54 | 54 | 0.763 |
| 55 | 55 | 0.0361 |
| 56 | 56 | 0.898 |
| 57 | 57 | 0.959 |
| 58 | 58 | 0.308 |
| 59 | 59 | 0.299 |
| 6 | 6 | 0.535 |
| 60 | 60 | 0.678 |
| 61 | 61 | 0.308 |
| 62 | 62 | 0.862 |
| 63 | 63 | 0.587 |
| 64 | 64 | 0.716 |
| 65 | 65 | 0.518 |
| 66 | 66 | 0.329 |
| 67 | 67 | 0.557 |
| 68 | 68 | 0.769 |
| 69 | 69 | 0.582 |
| 7 | 7 | 0.366 |
| 70 | 70 | 0.322 |
| 71 | 71 | 0.183 |
| 72 | 72 | 0.706 |
| 73 | 73 | 0.0125 |
| 74 | 74 | 0.0568 |
| 75 | 75 | 0.679 |
| 76 | 76 | 0.467 |
| 77 | 77 | 0.113 |
| 78 | 78 | 0.349 |
| 79 | 79 | 0.0182 |
| 8 | 8 | 0.459 |
| 80 | 80 | 0.689 |
| 81 | 81 | 0.322 |
| 82 | 82 | 0.143 |
| 83 | 83 | 0.936 |
| 84 | 84 | 0.129 |
| 85 | 85 | 0.0839 |
| 86 | 86 | 0.481 |
| 87 | 87 | 0.213 |
| 88 | 88 | 0.909 |
| 89 | 89 | 0.0941 |
| 9 | 9 | 0.596 |
| 90 | 90 | 0.805 |
| 91 | 91 | 0.814 |
| 92 | 92 | 0.0253 |
| 93 | 93 | 0.713 |
| 94 | 94 | 0.646 |
| 95 | 95 | 0.371 |
| 96 | 96 | 0.238 |
| 97 | 97 | 0.295 |
| 98 | 98 | 0.387 |
| 99 | 99 | 0.0283 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11052
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000139 human preadipocyte of the breast sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
