FF:11469-119C2: Difference between revisions

Latest revision as of 18:03, 4 June 2020

Name:	Preadipocyte - perirenal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12065
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	66 years old adult
sex	female
age	66
cell type	preadipocyte
cell line	NA
company	Zenbio
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.1

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005735

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12065		CAGE		DRX008412		DRR009284

Accession ID Hg19

Library id		BAM		CTSS
CNhs12065		DRZ000709		DRZ002094

Accession ID Hg38

Library id		BAM		CTSS
CNhs12065		DRZ012059		DRZ013444

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005735

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10011.ACTTGA		sRNA-Seq		DRX037170		DRR041536

Accession ID Hg19

Library id		BAM		CTSS
SRhi10011.ACTTGA		DRZ007178

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0809
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.841
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.308
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.395
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.737
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.737
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.511
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00126
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.395
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0194
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.575
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.395
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.395
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.841
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.395
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.925
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.925
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12065

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.45
MA0003.1	MA0003.1	0.126
MA0004.1	MA0004.1	0.872
MA0006.1	MA0006.1	0.306
MA0007.1	MA0007.1	0.0653
MA0009.1	MA0009.1	0.679
MA0014.1	MA0014.1	0.602
MA0017.1	MA0017.1	0.271
MA0018.2	MA0018.2	4.43325e-4
MA0019.1	MA0019.1	0.911
MA0024.1	MA0024.1	4.54829e-6
MA0025.1	MA0025.1	0.00793
MA0027.1	MA0027.1	0.899
MA0028.1	MA0028.1	0.0194
MA0029.1	MA0029.1	0.209
MA0030.1	MA0030.1	0.652
MA0031.1	MA0031.1	0.455
MA0035.2	MA0035.2	0.947
MA0038.1	MA0038.1	0.0122
MA0039.2	MA0039.2	0.6
MA0040.1	MA0040.1	0.353
MA0041.1	MA0041.1	0.325
MA0042.1	MA0042.1	0.819
MA0043.1	MA0043.1	0.00318
MA0046.1	MA0046.1	0.39
MA0047.2	MA0047.2	0.668
MA0048.1	MA0048.1	0.86
MA0050.1	MA0050.1	2.70593e-6
MA0051.1	MA0051.1	0.041
MA0052.1	MA0052.1	0.793
MA0055.1	MA0055.1	0.862
MA0057.1	MA0057.1	0.0872
MA0058.1	MA0058.1	0.979
MA0059.1	MA0059.1	0.433
MA0060.1	MA0060.1	4.25896e-6
MA0061.1	MA0061.1	0.948
MA0062.2	MA0062.2	3.30069e-5
MA0065.2	MA0065.2	0.15
MA0066.1	MA0066.1	0.0853
MA0067.1	MA0067.1	0.0264
MA0068.1	MA0068.1	0.121
MA0069.1	MA0069.1	0.206
MA0070.1	MA0070.1	0.841
MA0071.1	MA0071.1	0.263
MA0072.1	MA0072.1	0.961
MA0073.1	MA0073.1	0.864
MA0074.1	MA0074.1	0.465
MA0076.1	MA0076.1	0.00386
MA0077.1	MA0077.1	0.373
MA0078.1	MA0078.1	0.151
MA0079.2	MA0079.2	0.433
MA0080.2	MA0080.2	1.4222e-5
MA0081.1	MA0081.1	0.0219
MA0083.1	MA0083.1	3.54579e-4
MA0084.1	MA0084.1	0.97
MA0087.1	MA0087.1	0.452
MA0088.1	MA0088.1	0.639
MA0090.1	MA0090.1	1.23107e-4
MA0091.1	MA0091.1	0.0388
MA0092.1	MA0092.1	0.0187
MA0093.1	MA0093.1	0.978
MA0099.2	MA0099.2	0.792
MA0100.1	MA0100.1	0.382
MA0101.1	MA0101.1	0.0795
MA0102.2	MA0102.2	0.158
MA0103.1	MA0103.1	0.986
MA0104.2	MA0104.2	0.531
MA0105.1	MA0105.1	0.679
MA0106.1	MA0106.1	0.104
MA0107.1	MA0107.1	0.159
MA0108.2	MA0108.2	7.04029e-4
MA0111.1	MA0111.1	0.792
MA0112.2	MA0112.2	2.92432e-4
MA0113.1	MA0113.1	0.0153
MA0114.1	MA0114.1	0.285
MA0115.1	MA0115.1	0.243
MA0116.1	MA0116.1	0.113
MA0117.1	MA0117.1	0.635
MA0119.1	MA0119.1	0.0942
MA0122.1	MA0122.1	0.725
MA0124.1	MA0124.1	0.0141
MA0125.1	MA0125.1	0.273
MA0131.1	MA0131.1	0.125
MA0135.1	MA0135.1	0.981
MA0136.1	MA0136.1	1.74148e-8
MA0137.2	MA0137.2	0.0739
MA0138.2	MA0138.2	0.0694
MA0139.1	MA0139.1	0.707
MA0140.1	MA0140.1	0.865
MA0141.1	MA0141.1	0.125
MA0142.1	MA0142.1	0.121
MA0143.1	MA0143.1	0.836
MA0144.1	MA0144.1	0.686
MA0145.1	MA0145.1	0.182
MA0146.1	MA0146.1	0.16
MA0147.1	MA0147.1	0.79
MA0148.1	MA0148.1	0.415
MA0149.1	MA0149.1	0.285
MA0150.1	MA0150.1	0.782
MA0152.1	MA0152.1	0.0548
MA0153.1	MA0153.1	0.0268
MA0154.1	MA0154.1	0.0857
MA0155.1	MA0155.1	0.0784
MA0156.1	MA0156.1	3.89134e-5
MA0157.1	MA0157.1	0.601
MA0159.1	MA0159.1	0.0331
MA0160.1	MA0160.1	0.55
MA0162.1	MA0162.1	0.0681
MA0163.1	MA0163.1	0.00859
MA0164.1	MA0164.1	0.722
MA0258.1	MA0258.1	0.00504
MA0259.1	MA0259.1	0.707

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12065

Novel motif	Logo	P-value
1	1	0.312
10	10	0.905
100	100	0.59
101	101	0.886
102	102	0.579
103	103	0.261
104	104	0.32
105	105	0.907
106	106	0.0287
107	107	0.0208
108	108	0.229
109	109	0.123
11	11	0.176
110	110	0.312
111	111	0.699
112	112	0.353
113	113	0.939
114	114	0.0866
115	115	0.105
116	116	0.156
117	117	0.859
118	118	0.585
119	119	0.395
12	12	0.662
120	120	0.721
121	121	0.74
122	122	0.975
123	123	0.268
124	124	0.891
125	125	0.939
126	126	0.894
127	127	0.702
128	128	0.0671
129	129	0.553
13	13	0.94
130	130	0.607
131	131	0.924
132	132	0.853
133	133	0.474
134	134	0.44
135	135	0.212
136	136	0.88
137	137	0.878
138	138	0.858
139	139	0.0124
14	14	0.978
140	140	0.842
141	141	0.782
142	142	0.567
143	143	0.083
144	144	0.704
145	145	0.821
146	146	0.157
147	147	0.209
148	148	0.534
149	149	0.00229
15	15	0.359
150	150	0.539
151	151	0.323
152	152	0.0305
153	153	0.59
154	154	0.487
155	155	0.624
156	156	0.511
157	157	0.95
158	158	0.438
159	159	0.953
16	16	0.0384
160	160	0.112
161	161	0.707
162	162	0.875
163	163	0.96
164	164	0.343
165	165	0.685
166	166	0.497
167	167	0.361
168	168	0.165
169	169	0.0148
17	17	0.113
18	18	0.0938
19	19	0.0626
2	2	0.203
20	20	0.506
21	21	0.981
22	22	0.0725
23	23	0.0494
24	24	0.72
25	25	0.725
26	26	0.203
27	27	0.0961
28	28	0.376
29	29	0.63
3	3	0.316
30	30	0.456
31	31	0.373
32	32	1.27741e-10
33	33	0.605
34	34	0.428
35	35	0.537
36	36	0.487
37	37	0.118
38	38	0.58
39	39	0.188
4	4	0.188
40	40	0.28
41	41	0.489
42	42	0.895
43	43	0.0894
44	44	0.134
45	45	0.407
46	46	0.206
47	47	0.49
48	48	0.37
49	49	0.23
5	5	0.26
50	50	0.557
51	51	0.497
52	52	0.258
53	53	0.899
54	54	0.317
55	55	0.338
56	56	0.682
57	57	0.302
58	58	0.819
59	59	0.0487
6	6	0.888
60	60	0.173
61	61	0.91
62	62	0.923
63	63	0.129
64	64	0.419
65	65	0.187
66	66	0.587
67	67	0.408
68	68	0.0767
69	69	0.129
7	7	0.715
70	70	0.057
71	71	0.381
72	72	0.955
73	73	0.0306
74	74	0.351
75	75	0.39
76	76	0.608
77	77	0.0144
78	78	0.913
79	79	0.00625
8	8	0.0779
80	80	0.88
81	81	0.565
82	82	0.0932
83	83	0.834
84	84	0.134
85	85	0.0151
86	86	0.588
87	87	0.399
88	88	0.231
89	89	0.00951
9	9	0.291
90	90	0.688
91	91	0.707
92	92	0.0382
93	93	0.825
94	94	0.33
95	95	0.179
96	96	0.823
97	97	0.189
98	98	0.346
99	99	0.0759

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12065

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000141 human perirenal preadipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002581 (perirenal preadipocyte)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0005406 (perirenal fat)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000141 (human perirenal preadipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005735
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005735
+|accession_numbers=CAGE;DRX008412;DRR009284;DRZ000709;DRZ002094;DRZ012059;DRZ013444
+|accession_numbers_RNASeq=sRNA-Seq;DRX037170;DRR041536;DRZ007178
 |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0005406
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002334,CL:0002581
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002581
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000141
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.83!66.79!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.78!155.84!OSR1;;chr19:47523058..47523114,+!p1@NPAS1!1.63!41.56!NPAS1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.59!ZBED1;;chr9:132427883..132427951,+!p2@PRRX2!1.55!34.14!PRRX2;;chr6:134210243..134210257,+!p1@TCF21!1.49!29.68!TCF21;;chr1:23885981..23886002,-!p1@ID3!1.46!4627.68!ID3;;chr2:239756739..239756755,+!p2@TWIST2!1.44!44.53!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.42!32.65!PRRX2;;chr7:1577899..1577943,+!p3@MAFK!1.42!25.23!MAFK;;chr12:54402745..54402788,+!p1@HOXC8!1.39!23.75!HOXC8;;chr18:19749386..19749404,+!p2@GATA6!1.30!26.72!GATA6;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.40!GATA6;;chr2:239756671..239756732,+!p1@TWIST2!1.27!56.40!TWIST2;;chr2:85980919..85980942,+!p4@ATOH8!1.21!16.33!ATOH8;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!23.75!CREB3L1;;chr2:85981073..85981091,+!p5@ATOH8!1.16!13.36!ATOH8;;chr6:19837592..19837621,+!p1@ID4!1.15!80.15!ID4;;chr8:72756267..72756296,-!p4@MSC!1.15!19.29!MSC;;chrX:106960180..106960197,-!p2@TSC22D3!1.14!48.98!TSC22D3;;chr20:30193083..30193098,+!p1@ID1!1.13!1000.34!ID1;;chr5:72744445..72744466,-!p2@FOXD1!1.13!20.78!FOXD1;;chr2:85980951..85981004,+!p1@ATOH8!1.11!19.29!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!1.11!11.87!HAND2;;chr7:27192185..27192209,-!p1@HOXA3!1.11!11.87!HOXA3;;chr8:11561684..11561751,+!p1@GATA4!1.11!11.87!GATA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.11!11.87!HOXC5;;chr16:31076332..31076388,-!p3@ZNF668!1.11!11.87!ZNF668;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!56.40!CREB3L1;;chr7:27183263..27183284,-!p2@HOXA5!1.06!10.39!HOXA5;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!118.73!PLAGL1;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.36!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.00!517.98!ATF5;;chr1:170633194..170633205,+!p18@PRRX1!1.00!8.91!PRRX1;;chr2:178129853..178129860,-!p14@NFE2L2!1.00!8.91!NFE2L2;;chr6:1389989..1390019,+!p2@FOXF2!1.00!8.91!FOXF2;;chr11:8102846..8102892,+!p1@TUB!0.97!11.87!TUB;;chr8:106330656..106330684,+!p1@ZFPM2!0.94!20.78!ZFPM2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.87!MSC;;chr5:139492456..139492489,+!p7@PURA!0.93!7.42!PURA;;chr7:150945865..150945896,-!p4@SMARCD3!0.93!7.42!SMARCD3;;chr11:46299443..46299459,+!p4@CREB3L1!0.93!7.42!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.93!7.42!HOXC8;;chr13:45150455..45150472,-!p8@TSC22D1!0.93!7.42!TSC22D1;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.42!HAND2;;chr2:8822176..8822196,+!p1@ID2!0.91!1056.74!ID2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.29!HIC1;;chr7:44143978..44143989,+!p2@AEBP1!0.91!13.36!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.91!AEBP1;;chr14:62213758..62213774,+!p8@HIF1A!0.89!8.91!HIF1A;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.17!NR2F1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.87!479.39!TAX1BP3;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.39!ZFP64;;chr1:170632285..170632309,+!p1@PRRX1!0.87!7.42!PRRX1;;chr14:75894714..75894733,+!p1@JDP2!0.86!185.52!JDP2;;chr7:44143925..44143970,+!p1@AEBP1!0.86!148.42!AEBP1;;chr13:45151259..45151326,-!p2@TSC22D1!0.85!38.59!TSC22D1;;chr5:92919100..92919135,+!p3@NR2F1!0.85!7.42!NR2F1;;chr8:49833948..49833973,-!p2@SNAI2!0.84!40.07!SNAI2;;chr3:126076242..126076257,-!p1@KLF15!0.84!7.42!KLF15;;chr6:35454312..35454323,-!p9@TEAD3!0.84!5.94!TEAD3;;chr1:170632683..170632696,+!p12@PRRX1!0.84!5.94!PRRX1;;chr15:66994885..66994904,+!p7@SMAD6!0.84!5.94!SMAD6;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.94!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.84!5.94!HOXC5;;chr13:37494275..37494304,-!p2@SMAD9!0.84!5.94!SMAD9;;chrX:106960249..106960260,-!p5@TSC22D3!0.81!8.91!TSC22D3;;chr18:3450293..3450304,+!p4@TGIF1!0.79!13.36!TGIF1;;chr1:170633262..170633285,+!p3@PRRX1!0.79!5.94!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.79!5.94!MSC;;chr14:62213827..62213853,+!p6@HIF1A!0.78!7.42!HIF1A;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.87!SREBF2;;chr1:221052776..221052799,+!p1@HLX!0.75!8.91!HLX;;chr15:96869255..96869291,+!p6@NR2F2!0.75!8.91!NR2F2;;chr11:8102819..8102845,+!p3@TUB!0.75!5.94!TUB;;chrX:106960285..106960299,-!p1@TSC22D3!0.74!136.54!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!0.74!13.36!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.74!10.39!SMARCD3;;chr18:3450334..3450341,+!p15@TGIF1!0.74!5.94!TGIF1;;chr15:66994718..66994729,+!p4@SMAD6!0.74!4.45!SMAD6;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.45!NFE2L1;;chr18:19749353..19749367,+!p4@GATA6!0.74!4.45!GATA6;;chr18:19749504..19749515,+!p5@GATA6!0.74!4.45!GATA6;;chr19:31840168..31840186,-!p6@TSHZ3!0.74!4.45!TSHZ3;;chr7:27183095..27183108,-!p7@HOXA5!0.74!4.45!HOXA5;;chr7:27183114..27183138,-!p3@HOXA5!0.74!4.45!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.74!4.45!HOXA7;;chr8:72756380..72756427,-!p8@MSC!0.74!4.45!MSC;;chr19:46801639..46801699,+!p1@HIF3A!0.74!4.45!HIF3A;;chr1:197886461..197886558,+!p1@LHX9!0.74!4.45!LHX9;;chr1:201979703..201979721,+!p2@ELF3!0.74!4.45!ELF3;;chr2:119604456..119604501,-!p2@EN1!0.74!4.45!EN1;;chr2:119605214..119605230,-!p1@EN1!0.74!4.45!EN1;;chr2:176994408..176994492,+!p1@HOXD8!0.74!4.45!HOXD8;;chr2:85980768..85980783,+!p10@ATOH8!0.74!4.45!ATOH8;;chr12:54379029..54379057,+!p2@HOXC10!0.74!4.45!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.45!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.74!4.45!HOXC4;;chr13:37494306..37494324,-!p4@SMAD9!0.74!4.45!SMAD9;;chr14:62162285..62162296,+!p3@HIF1A!0.73!25.23!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.87!TWIST1;;chr11:8102749..8102769,+!p2@TUB!0.73!8.91!TUB;;chr11:12696071..12696086,+!p3@TEAD1!0.73!5.94!TEAD1;;chr19:13136130..13136165,+!p6@NFIX!0.73!5.94!NFIX;;chrX:70315688..70315709,+!p1@FOXO4!0.71!10.39!FOXO4;;chr8:72756063..72756125,-!p1@MSC!0.71!8.91!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.70!589.22!CEBPD;;chr10:77161504..77161530,-!p1@ZNF503!0.70!60.85!ZNF503;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!46.01!GLIS2;;chr15:66994663..66994680,+!p1@SMAD6!0.70!10.39!SMAD6;;chr1:8938709..8938720,-!p3@ENO1!0.69!216.69!ENO1;;chr3:178789522..178789564,-!p2@ZMAT3!0.69!32.65!ZMAT3;;chr7:150945754..150945789,-!p2@SMARCD3!0.69!13.36!SMARCD3;;chr5:43067583..43067606,+!p7@ZNF131!0.69!5.94!ZNF131;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.94!ZBTB16;;chr1:23886132..23886156,-!p2@ID3!0.69!4.45!ID3;;chr7:137686552..137686564,-!p9@CREB3L2!0.68!5.94!CREB3L2;;chr17:46126136..46126152,+!p1@NFE2L1!0.67!218.17!NFE2L1;;chr5:72744594..72744609,-!p1@FOXD1!0.67!19.29!FOXD1;;chr22:42269885..42269899,+!p4@SREBF2!0.67!5.94!SREBF2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.45!TBX18;;chr14:62162258..62162269,+!p2@HIF1A!0.65!38.59!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.26!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.91!NFATC4;;chr2:85981222..85981259,+!p2@ATOH8!0.64!5.94!ATOH8;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.94!GLIS3;;chr8:72756213..72756243,-!p5@MSC!0.63!4.45!MSC;;chr2:28618532..28618610,+!p4@FOSL2!0.62!5.94!FOSL2;;chr19:16435625..16435682,+!p1@KLF2!0.61!120.22!KLF2;;chr12:57504975..57505019,-!p2@STAT6!0.61!14.84!STAT6;;chr2:85197924..85197955,+!p3@KCMF1!0.61!13.36!KCMF1;;chr15:96874927..96874938,+!p8@NR2F2!0.61!7.42!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.61!4.45!ATF5;;chr2:46524537..46524553,+!p1@EPAS1!0.60!360.66!EPAS1;;chr12:124873357..124873401,-!p1@NCOR2!0.60!41.56!NCOR2;;chr13:45151403..45151433,-!p5@TSC22D1!0.60!7.42!TSC22D1;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.42!GLI2;;chr15:42749722..42749739,-!p2@ZFP106!0.60!5.94!ZFP106;;chr18:19749517..19749531,+!p3@GATA6!0.60!5.94!GATA6;;chr17:46687959..46688007,-!p2@HOXB7!0.60!4.45!HOXB7;;chr14:95236440..95236465,-!p1@GSC!0.60!2.97!GSC;;chr16:67198683..67198698,+!p2@HSF4!0.60!2.97!HSF4;;chr16:67881647..67881663,-!p3@CENPT!0.60!2.97!CENPT;;chr17:79881318..79881331,-!p7@MAFG!0.60!2.97!MAFG;;chr18:53255379..53255382,-!p45@TCF4!0.60!2.97!TCF4;;chr19:13135582..13135600,+!p3@NFIX!0.60!2.97!NFIX;;chr11:113930401..113930422,+!p3@ZBTB16!0.60!2.97!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.60!2.97!ZBTB16;;chr12:10870927..10870966,-!p5@CSDA!0.60!2.97!CSDA;;chr12:54394059..54394088,+!p3@HOXC9!0.60!2.97!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.97!HOXC9;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr12:54422268..54422278,+!p8@HOXC6!0.60!2.97!HOXC6;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.60!2.97!HOXC6;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr12:96588425..96588432,+!p8@ELK3!0.60!2.97!ELK3;;chr1:170632137..170632172,+!p10@PRRX1!0.60!2.97!PRRX1;;chr1:244219392..244219409,+!p5@ZNF238!0.60!2.97!ZNF238;;chr20:30433396..30433414,-!p1@FOXS1!0.60!2.97!FOXS1;;chr20:48808064..48808086,+!p15@CEBPB!0.60!2.97!CEBPB;;chr5:158527104..158527135,-!p4@EBF1!0.60!2.97!EBF1;;chr5:92922831..92922864,+!p14@NR2F1!0.60!2.97!NR2F1;;chr7:150102756..150102772,+!p5@ZNF775!0.60!2.97!ZNF775;;chr7:15726296..15726315,-!p1@MEOX2!0.60!2.97!MEOX2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!2.97!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.60!2.97!HOXA5;;chr8:25902876..25902936,-!p1@EBF2!0.60!2.97!EBF2;;chr8:55370487..55370503,+!p1@SOX17!0.60!2.97!SOX17;;chr8:72755987..72756002,-!p7@MSC!0.60!2.97!MSC;;chr2:114036488..114036504,-!p1@PAX8!0.60!2.97!PAX8;;chr2:177001290..177001315,+!p1@HOXD3!0.60!2.97!HOXD3;;chr2:85980903..85980914,+!p11@ATOH8!0.60!2.97!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!0.60!2.97!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.60!2.97!ATOH8;;chr3:25470156..25470227,+!p2@RARB!0.60!2.97!RARB;;chr12:52445218..52445237,+!p1@NR4A1!0.59!44.53!NR4A1;;chr2:27357446..27357475,-!p2@PREB!0.59!11.87!PREB;;chr2:66662281..66662308,+!p1@MEIS1!0.59!11.87!MEIS1;;chr12:56753869..56753930,-!p1@STAT2!0.58!154.35!STAT2;;chr8:49833978..49833996,-!p1@SNAI2!0.58!71.24!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.58!10.39!AHRR;;chr12:124827609..124827643,-!p9@NCOR2!0.58!4.45!NCOR2;;chr12:80084167..80084197,-!p5@PAWR!0.57!7.42!PAWR;;chr12:52430894..52430952,+!p3@NR4A1!0.57!5.94!NR4A1;;chr7:27135591..27135658,-!p1@HOXA1!0.57!5.94!HOXA1;;chr8:73921136..73921151,+!p2@TERF1!0.57!4.45!TERF1;;chr6:4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005406
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11469-119C2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000141;;FF:0000210
+|is_a=EFO:0002091;;FF:0000141
+|is_obsolete=
+|library_id=CNhs12065
+|library_id_phase_based=2:CNhs12065
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11469
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACTTGA.11469
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11469
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACTTGA.11469
 |name=Preadipocyte - perirenal, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12065,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10011,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=119
 |rna_catalog_number=N/A
@@ Line 56: / Line 82: @@
 |rna_tube_id=119C2
 |rna_weight_ug=29.6
+|rnaseq_library_id=SRhi10011.ACTTGA
 |sample_age=66
+|sample_category=primary cells
 |sample_cell_catalog=F-PR-F
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=kidney
 |top_motifs=RXRA_VDR{dimer}:2.41927022559;GLI1..3:2.37941937281;HES1:2.17622079625;HIF1A:2.1309601428;ZNF423:2.11298124188;IKZF1:2.09602520196;FOXL1:2.03776090159;ESR1:2.02700534285;ATF6:2.01968948465;GZF1:1.95093549042;SMAD1..7,9:1.90900390379;TP53:1.80130811634;TAL1_TCF{3,4,12}:1.77107875055;TFAP4:1.73529229069;EBF1:1.71666614113;MAFB:1.67814050078;HMX1:1.54205230305;SRF:1.43890509148;PAX1,9:1.35850122512;HOX{A5,B5}:1.35844191246;ZNF238:1.31990781739;UFEwm:1.2829232598;ALX4:1.27158945075;TEAD1:1.23011055078;RXR{A,B,G}:1.17748952214;ZNF148:1.17587322847;ESRRA:1.15403113811;HAND1,2:1.15399613265;NKX2-2,8:1.12097793659;XBP1:1.10526907851;bHLH_family:1.02206161207;TLX1..3_NFIC{dimer}:1.00753030039;NKX3-1:0.993143486995;HOX{A6,A7,B6,B7}:0.885118842702;GTF2A1,2:0.8763712977;NR6A1:0.874358606381;TFCP2:0.803830708095;TBX4,5:0.776843561158;NKX3-2:0.745020386669;TBP:0.735921637883;HIC1:0.70753674527;TFAP2B:0.699905038864;T:0.683329440888;NHLH1,2:0.672837388169;KLF4:0.661573245003;SPZ1:0.624769540842;VSX1,2:0.619664866115;GCM1,2:0.600334396591;NKX2-1,4:0.573237125414;MYBL2:0.548192573091;GFI1B:0.529837497435;MTF1:0.521197213521;EVI1:0.450557969962;NFE2L1:0.444580404928;AR:0.436263149287;EN1,2:0.431999545235;HLF:0.414251431968;GTF2I:0.40303643561;MAZ:0.366174450766;LHX3,4:0.306859728264;NR5A1,2:0.280280626952;TFAP2{A,C}:0.271949662386;MEF2{A,B,C,D}:0.264213341623;PAX6:0.25489710512;SOX17:0.237279084116;XCPE1{core}:0.21665388363;CEBPA,B_DDIT3:0.200408759761;POU6F1:0.188423468651;HNF1A:0.174559372234;PPARG:0.17174938261;RREB1:0.170513543927;FOXA2:0.163196655937;NR3C1:0.162751416491;NFATC1..3:0.127400687365;REST:0.117195776841;NFIL3:0.11343645758;DBP:0.107743474699;MTE{core}:0.0954377221447;NFE2L2:0.0852220196875;ZIC1..3:0.0742931917532;ARID5B:0.0737869305108;FOXO1,3,4:0.0651991941152;HMGA1,2:0.032797485846;CRX:0.0260442388956;SOX5:0.015446456891;NANOG{mouse}:0.00798197696961;PATZ1:-0.00479977396433;LEF1_TCF7_TCF7L1,2:-0.0050085104077;HNF4A_NR2F1,2:-0.0141179559266;STAT2,4,6:-0.0329631392012;PAX5:-0.0727351913979;BACH2:-0.0846040566532;FOSL2:-0.0847015231988;TEF:-0.0978781299207;HOX{A4,D4}:-0.118570498674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.146094484703;FOS_FOS{B,L1}_JUN{B,D}:-0.156106736067;ZBTB6:-0.188280451105;FOX{F1,F2,J1}:-0.193911737048;SNAI1..3:-0.211230499013;MYOD1:-0.240167580771;PRRX1,2:-0.285875671625;ADNP_IRX_SIX_ZHX:-0.290512568819;MYFfamily:-0.311583666537;HSF1,2:-0.322646936347;RFX1:-0.330951651914;NFE2:-0.347410386366;ZEB1:-0.361352672183;FOX{D1,D2}:-0.361601488931;MYB:-0.363925242894;NFIX:-0.383560415209;FOXM1:-0.391126192877;POU3F1..4:-0.396516810224;RUNX1..3:-0.39875539308;EP300:-0.405750406491;ETS1,2:-0.412252073702;SP1:-0.417948506829;LMO2:-0.43628712618;NFKB1_REL_RELA:-0.437074516168;MED-1{core}:-0.440786561392;FOXP3:-0.44452483956;FOX{I1,J2}:-0.444554417207;SREBF1,2:-0.45975853541;GATA6:-0.472819017148;ONECUT1,2:-0.476606061037;ZBTB16:-0.50612099542;TGIF1:-0.512320546269;PAX8:-0.513898284472;JUN:-0.528517117751;AHR_ARNT_ARNT2:-0.595900326545;PAX2:-0.61916276751;EGR1..3:-0.620074963664;TLX2:-0.629946466099;TOPORS:-0.631972285619;SPI1:-0.633975416522;PAX4:-0.661265994572;HOXA9_MEIS1:-0.676920577706;ZNF143:-0.68133747521;RORA:-0.708636137362;ATF5_CREB3:-0.715919160894;IRF1,2:-0.717077960298;ATF2:-0.722550546488;GATA4:-0.727356775407;PAX3,7:-0.728008774927;PRDM1:-0.736567895596;STAT5{A,B}:-0.740152935139;PDX1:-0.746577106692;ELK1,4_GABP{A,B1}:-0.749412919225;ATF4:-0.75309727664;HBP1_HMGB_SSRP1_UBTF:-0.754605111833;MZF1:-0.757013634115;CDC5L:-0.762699752719;NR1H4:-0.765820298951;AIRE:-0.770565120888;OCT4_SOX2{dimer}:-0.789513083369;SOX2:-0.825336723746;STAT1,3:-0.833745326148;POU1F1:-0.849124995284;PITX1..3:-0.85014858809;SPIB:-0.897926189053;SOX{8,9,10}:-0.900877512418;YY1:-0.923415648793;PBX1:-0.971440046104;GFI1:-0.986384749733;IRF7:-0.996891298295;NKX6-1,2:-1.0065440859;IKZF2:-1.03478269289;ZNF384:-1.04023846553;NANOG:-1.08879046295;ZFP161:-1.09675005561;NKX2-3_NKX2-5:-1.11132561841;ELF1,2,4:-1.11365924986;NRF1:-1.12939003551;CUX2:-1.14245350678;DMAP1_NCOR{1,2}_SMARC:-1.17645105861;CREB1:-1.2219208446;NFY{A,B,C}:-1.33345592003;TFDP1:-1.36183327844;FOXN1:-1.37470885937;FOXP1:-1.41020136871;POU5F1:-1.43482801723;RFX2..5_RFXANK_RFXAP:-1.47508872908;BREu{core}:-1.56732507619;BPTF:-1.56874129238;E2F1..5:-1.57104557613;RBPJ:-1.5791517783;POU2F1..3:-1.5872925664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.77187202113;FOXQ1:-1.80602744598;ALX1:-1.88653217207;CDX1,2,4:-2.04117659764;FOXD3:-2.74661658669
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11469-119C2;search_select_hide=table117:FF:11469-119C2
 }}

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FF:11469-119C2: Difference between revisions

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