FF:11469-119C2: Difference between revisions

Latest revision as of 18:03, 4 June 2020

Name:	Preadipocyte - perirenal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12065
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	66 years old adult
sex	female
age	66
cell type	preadipocyte
cell line	NA
company	Zenbio
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.1

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005735

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12065		CAGE		DRX008412		DRR009284

Accession ID Hg19

Library id		BAM		CTSS
CNhs12065		DRZ000709		DRZ002094

Accession ID Hg38

Library id		BAM		CTSS
CNhs12065		DRZ012059		DRZ013444

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005735

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10011.ACTTGA		sRNA-Seq		DRX037170		DRR041536

Accession ID Hg19

Library id		BAM		CTSS
SRhi10011.ACTTGA		DRZ007178

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0809
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.841
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.308
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.395
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.737
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.737
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.511
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00126
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.395
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0194
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.575
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.395
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.395
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.841
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.395
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.925
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.925
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12065

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.45
MA0003.1	MA0003.1	0.126
MA0004.1	MA0004.1	0.872
MA0006.1	MA0006.1	0.306
MA0007.1	MA0007.1	0.0653
MA0009.1	MA0009.1	0.679
MA0014.1	MA0014.1	0.602
MA0017.1	MA0017.1	0.271
MA0018.2	MA0018.2	4.43325e-4
MA0019.1	MA0019.1	0.911
MA0024.1	MA0024.1	4.54829e-6
MA0025.1	MA0025.1	0.00793
MA0027.1	MA0027.1	0.899
MA0028.1	MA0028.1	0.0194
MA0029.1	MA0029.1	0.209
MA0030.1	MA0030.1	0.652
MA0031.1	MA0031.1	0.455
MA0035.2	MA0035.2	0.947
MA0038.1	MA0038.1	0.0122
MA0039.2	MA0039.2	0.6
MA0040.1	MA0040.1	0.353
MA0041.1	MA0041.1	0.325
MA0042.1	MA0042.1	0.819
MA0043.1	MA0043.1	0.00318
MA0046.1	MA0046.1	0.39
MA0047.2	MA0047.2	0.668
MA0048.1	MA0048.1	0.86
MA0050.1	MA0050.1	2.70593e-6
MA0051.1	MA0051.1	0.041
MA0052.1	MA0052.1	0.793
MA0055.1	MA0055.1	0.862
MA0057.1	MA0057.1	0.0872
MA0058.1	MA0058.1	0.979
MA0059.1	MA0059.1	0.433
MA0060.1	MA0060.1	4.25896e-6
MA0061.1	MA0061.1	0.948
MA0062.2	MA0062.2	3.30069e-5
MA0065.2	MA0065.2	0.15
MA0066.1	MA0066.1	0.0853
MA0067.1	MA0067.1	0.0264
MA0068.1	MA0068.1	0.121
MA0069.1	MA0069.1	0.206
MA0070.1	MA0070.1	0.841
MA0071.1	MA0071.1	0.263
MA0072.1	MA0072.1	0.961
MA0073.1	MA0073.1	0.864
MA0074.1	MA0074.1	0.465
MA0076.1	MA0076.1	0.00386
MA0077.1	MA0077.1	0.373
MA0078.1	MA0078.1	0.151
MA0079.2	MA0079.2	0.433
MA0080.2	MA0080.2	1.4222e-5
MA0081.1	MA0081.1	0.0219
MA0083.1	MA0083.1	3.54579e-4
MA0084.1	MA0084.1	0.97
MA0087.1	MA0087.1	0.452
MA0088.1	MA0088.1	0.639
MA0090.1	MA0090.1	1.23107e-4
MA0091.1	MA0091.1	0.0388
MA0092.1	MA0092.1	0.0187
MA0093.1	MA0093.1	0.978
MA0099.2	MA0099.2	0.792
MA0100.1	MA0100.1	0.382
MA0101.1	MA0101.1	0.0795
MA0102.2	MA0102.2	0.158
MA0103.1	MA0103.1	0.986
MA0104.2	MA0104.2	0.531
MA0105.1	MA0105.1	0.679
MA0106.1	MA0106.1	0.104
MA0107.1	MA0107.1	0.159
MA0108.2	MA0108.2	7.04029e-4
MA0111.1	MA0111.1	0.792
MA0112.2	MA0112.2	2.92432e-4
MA0113.1	MA0113.1	0.0153
MA0114.1	MA0114.1	0.285
MA0115.1	MA0115.1	0.243
MA0116.1	MA0116.1	0.113
MA0117.1	MA0117.1	0.635
MA0119.1	MA0119.1	0.0942
MA0122.1	MA0122.1	0.725
MA0124.1	MA0124.1	0.0141
MA0125.1	MA0125.1	0.273
MA0131.1	MA0131.1	0.125
MA0135.1	MA0135.1	0.981
MA0136.1	MA0136.1	1.74148e-8
MA0137.2	MA0137.2	0.0739
MA0138.2	MA0138.2	0.0694
MA0139.1	MA0139.1	0.707
MA0140.1	MA0140.1	0.865
MA0141.1	MA0141.1	0.125
MA0142.1	MA0142.1	0.121
MA0143.1	MA0143.1	0.836
MA0144.1	MA0144.1	0.686
MA0145.1	MA0145.1	0.182
MA0146.1	MA0146.1	0.16
MA0147.1	MA0147.1	0.79
MA0148.1	MA0148.1	0.415
MA0149.1	MA0149.1	0.285
MA0150.1	MA0150.1	0.782
MA0152.1	MA0152.1	0.0548
MA0153.1	MA0153.1	0.0268
MA0154.1	MA0154.1	0.0857
MA0155.1	MA0155.1	0.0784
MA0156.1	MA0156.1	3.89134e-5
MA0157.1	MA0157.1	0.601
MA0159.1	MA0159.1	0.0331
MA0160.1	MA0160.1	0.55
MA0162.1	MA0162.1	0.0681
MA0163.1	MA0163.1	0.00859
MA0164.1	MA0164.1	0.722
MA0258.1	MA0258.1	0.00504
MA0259.1	MA0259.1	0.707

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12065

Novel motif	Logo	P-value
1	1	0.312
10	10	0.905
100	100	0.59
101	101	0.886
102	102	0.579
103	103	0.261
104	104	0.32
105	105	0.907
106	106	0.0287
107	107	0.0208
108	108	0.229
109	109	0.123
11	11	0.176
110	110	0.312
111	111	0.699
112	112	0.353
113	113	0.939
114	114	0.0866
115	115	0.105
116	116	0.156
117	117	0.859
118	118	0.585
119	119	0.395
12	12	0.662
120	120	0.721
121	121	0.74
122	122	0.975
123	123	0.268
124	124	0.891
125	125	0.939
126	126	0.894
127	127	0.702
128	128	0.0671
129	129	0.553
13	13	0.94
130	130	0.607
131	131	0.924
132	132	0.853
133	133	0.474
134	134	0.44
135	135	0.212
136	136	0.88
137	137	0.878
138	138	0.858
139	139	0.0124
14	14	0.978
140	140	0.842
141	141	0.782
142	142	0.567
143	143	0.083
144	144	0.704
145	145	0.821
146	146	0.157
147	147	0.209
148	148	0.534
149	149	0.00229
15	15	0.359
150	150	0.539
151	151	0.323
152	152	0.0305
153	153	0.59
154	154	0.487
155	155	0.624
156	156	0.511
157	157	0.95
158	158	0.438
159	159	0.953
16	16	0.0384
160	160	0.112
161	161	0.707
162	162	0.875
163	163	0.96
164	164	0.343
165	165	0.685
166	166	0.497
167	167	0.361
168	168	0.165
169	169	0.0148
17	17	0.113
18	18	0.0938
19	19	0.0626
2	2	0.203
20	20	0.506
21	21	0.981
22	22	0.0725
23	23	0.0494
24	24	0.72
25	25	0.725
26	26	0.203
27	27	0.0961
28	28	0.376
29	29	0.63
3	3	0.316
30	30	0.456
31	31	0.373
32	32	1.27741e-10
33	33	0.605
34	34	0.428
35	35	0.537
36	36	0.487
37	37	0.118
38	38	0.58
39	39	0.188
4	4	0.188
40	40	0.28
41	41	0.489
42	42	0.895
43	43	0.0894
44	44	0.134
45	45	0.407
46	46	0.206
47	47	0.49
48	48	0.37
49	49	0.23
5	5	0.26
50	50	0.557
51	51	0.497
52	52	0.258
53	53	0.899
54	54	0.317
55	55	0.338
56	56	0.682
57	57	0.302
58	58	0.819
59	59	0.0487
6	6	0.888
60	60	0.173
61	61	0.91
62	62	0.923
63	63	0.129
64	64	0.419
65	65	0.187
66	66	0.587
67	67	0.408
68	68	0.0767
69	69	0.129
7	7	0.715
70	70	0.057
71	71	0.381
72	72	0.955
73	73	0.0306
74	74	0.351
75	75	0.39
76	76	0.608
77	77	0.0144
78	78	0.913
79	79	0.00625
8	8	0.0779
80	80	0.88
81	81	0.565
82	82	0.0932
83	83	0.834
84	84	0.134
85	85	0.0151
86	86	0.588
87	87	0.399
88	88	0.231
89	89	0.00951
9	9	0.291
90	90	0.688
91	91	0.707
92	92	0.0382
93	93	0.825
94	94	0.33
95	95	0.179
96	96	0.823
97	97	0.189
98	98	0.346
99	99	0.0759

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12065

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000141 human perirenal preadipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002581 (perirenal preadipocyte)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0005406 (perirenal fat)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000141 (human perirenal preadipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11469-119C2
+|DRA_sample_Accession=CAGE@SAMD00005735
-|name=Preadipocyte - perirenal, donor1
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005735
-|sample_id=11469
+|accession_numbers=CAGE;DRX008412;DRR009284;DRZ000709;DRZ002094;DRZ012059;DRZ013444
-|rna_tube_id=119C2
+|accession_numbers_RNASeq=sRNA-Seq;DRX037170;DRR041536;DRZ007178
-|rna_box=119
+|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0005406
-|rna_position=C2
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002581
-|sample_cell_lot=lot:PR062602
-|sample_cell_catalog=F-PR-F
-|sample_company=Zenbio
-|rna_lot_number=
-|rna_catalog_number=N/A
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=66 years old adult
-|sample_tissue=kidney
-|sample_donor(cell lot)=
-|sample_sex=female
-|sample_age=66
-|sample_ethnicity=C
-|rna_rin=
-|rna_od260/230=1.4
-|rna_od260/280=2.01
-|sample_cell_type=preadipocyte
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.1
-|rna_weight_ug=29.6
-|rna_concentration=0.576
-|sample_note=
-|profile_hcage=CNhs12065,LSID838,release011,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=SRhi10011,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002581
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001013,UBERON:0001062,UBERON:0002384,UBERON:0005406
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000141
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.83!66.79!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.78!155.84!OSR1;;chr19:47523058..47523114,+!p1@NPAS1!1.63!41.56!NPAS1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.59!ZBED1;;chr9:132427883..132427951,+!p2@PRRX2!1.55!34.14!PRRX2;;chr6:134210243..134210257,+!p1@TCF21!1.49!29.68!TCF21;;chr1:23885981..23886002,-!p1@ID3!1.46!4627.68!ID3;;chr2:239756739..239756755,+!p2@TWIST2!1.44!44.53!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.42!32.65!PRRX2;;chr7:1577899..1577943,+!p3@MAFK!1.42!25.23!MAFK;;chr12:54402745..54402788,+!p1@HOXC8!1.39!23.75!HOXC8;;chr18:19749386..19749404,+!p2@GATA6!1.30!26.72!GATA6;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.40!GATA6;;chr2:239756671..239756732,+!p1@TWIST2!1.27!56.40!TWIST2;;chr2:85980919..85980942,+!p4@ATOH8!1.21!16.33!ATOH8;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!23.75!CREB3L1;;chr2:85981073..85981091,+!p5@ATOH8!1.16!13.36!ATOH8;;chr6:19837592..19837621,+!p1@ID4!1.15!80.15!ID4;;chr8:72756267..72756296,-!p4@MSC!1.15!19.29!MSC;;chrX:106960180..106960197,-!p2@TSC22D3!1.14!48.98!TSC22D3;;chr20:30193083..30193098,+!p1@ID1!1.13!1000.34!ID1;;chr5:72744445..72744466,-!p2@FOXD1!1.13!20.78!FOXD1;;chr2:85980951..85981004,+!p1@ATOH8!1.11!19.29!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!1.11!11.87!HAND2;;chr7:27192185..27192209,-!p1@HOXA3!1.11!11.87!HOXA3;;chr8:11561684..11561751,+!p1@GATA4!1.11!11.87!GATA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.11!11.87!HOXC5;;chr16:31076332..31076388,-!p3@ZNF668!1.11!11.87!ZNF668;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!56.40!CREB3L1;;chr7:27183263..27183284,-!p2@HOXA5!1.06!10.39!HOXA5;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!118.73!PLAGL1;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.36!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.00!517.98!ATF5;;chr1:170633194..170633205,+!p18@PRRX1!1.00!8.91!PRRX1;;chr2:178129853..178129860,-!p14@NFE2L2!1.00!8.91!NFE2L2;;chr6:1389989..1390019,+!p2@FOXF2!1.00!8.91!FOXF2;;chr11:8102846..8102892,+!p1@TUB!0.97!11.87!TUB;;chr8:106330656..106330684,+!p1@ZFPM2!0.94!20.78!ZFPM2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.87!MSC;;chr5:139492456..139492489,+!p7@PURA!0.93!7.42!PURA;;chr7:150945865..150945896,-!p4@SMARCD3!0.93!7.42!SMARCD3;;chr11:46299443..46299459,+!p4@CREB3L1!0.93!7.42!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.93!7.42!HOXC8;;chr13:45150455..45150472,-!p8@TSC22D1!0.93!7.42!TSC22D1;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.42!HAND2;;chr2:8822176..8822196,+!p1@ID2!0.91!1056.74!ID2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.29!HIC1;;chr7:44143978..44143989,+!p2@AEBP1!0.91!13.36!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.91!AEBP1;;chr14:62213758..62213774,+!p8@HIF1A!0.89!8.91!HIF1A;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.17!NR2F1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.87!479.39!TAX1BP3;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.39!ZFP64;;chr1:170632285..170632309,+!p1@PRRX1!0.87!7.42!PRRX1;;chr14:75894714..75894733,+!p1@JDP2!0.86!185.52!JDP2;;chr7:44143925..44143970,+!p1@AEBP1!0.86!148.42!AEBP1;;chr13:45151259..45151326,-!p2@TSC22D1!0.85!38.59!TSC22D1;;chr5:92919100..92919135,+!p3@NR2F1!0.85!7.42!NR2F1;;chr8:49833948..49833973,-!p2@SNAI2!0.84!40.07!SNAI2;;chr3:126076242..126076257,-!p1@KLF15!0.84!7.42!KLF15;;chr6:35454312..35454323,-!p9@TEAD3!0.84!5.94!TEAD3;;chr1:170632683..170632696,+!p12@PRRX1!0.84!5.94!PRRX1;;chr15:66994885..66994904,+!p7@SMAD6!0.84!5.94!SMAD6;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.94!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.84!5.94!HOXC5;;chr13:37494275..37494304,-!p2@SMAD9!0.84!5.94!SMAD9;;chrX:106960249..106960260,-!p5@TSC22D3!0.81!8.91!TSC22D3;;chr18:3450293..3450304,+!p4@TGIF1!0.79!13.36!TGIF1;;chr1:170633262..170633285,+!p3@PRRX1!0.79!5.94!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.79!5.94!MSC;;chr14:62213827..62213853,+!p6@HIF1A!0.78!7.42!HIF1A;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.87!SREBF2;;chr1:221052776..221052799,+!p1@HLX!0.75!8.91!HLX;;chr15:96869255..96869291,+!p6@NR2F2!0.75!8.91!NR2F2;;chr11:8102819..8102845,+!p3@TUB!0.75!5.94!TUB;;chrX:106960285..106960299,-!p1@TSC22D3!0.74!136.54!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!0.74!13.36!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.74!10.39!SMARCD3;;chr18:3450334..3450341,+!p15@TGIF1!0.74!5.94!TGIF1;;chr15:66994718..66994729,+!p4@SMAD6!0.74!4.45!SMAD6;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.45!NFE2L1;;chr18:19749353..19749367,+!p4@GATA6!0.74!4.45!GATA6;;chr18:19749504..19749515,+!p5@GATA6!0.74!4.45!GATA6;;chr19:31840168..31840186,-!p6@TSHZ3!0.74!4.45!TSHZ3;;chr7:27183095..27183108,-!p7@HOXA5!0.74!4.45!HOXA5;;chr7:27183114..27183138,-!p3@HOXA5!0.74!4.45!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.74!4.45!HOXA7;;chr8:72756380..72756427,-!p8@MSC!0.74!4.45!MSC;;chr19:46801639..46801699,+!p1@HIF3A!0.74!4.45!HIF3A;;chr1:197886461..197886558,+!p1@LHX9!0.74!4.45!LHX9;;chr1:201979703..201979721,+!p2@ELF3!0.74!4.45!ELF3;;chr2:119604456..119604501,-!p2@EN1!0.74!4.45!EN1;;chr2:119605214..119605230,-!p1@EN1!0.74!4.45!EN1;;chr2:176994408..176994492,+!p1@HOXD8!0.74!4.45!HOXD8;;chr2:85980768..85980783,+!p10@ATOH8!0.74!4.45!ATOH8;;chr12:54379029..54379057,+!p2@HOXC10!0.74!4.45!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.45!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.74!4.45!HOXC4;;chr13:37494306..37494324,-!p4@SMAD9!0.74!4.45!SMAD9;;chr14:62162285..62162296,+!p3@HIF1A!0.73!25.23!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.87!TWIST1;;chr11:8102749..8102769,+!p2@TUB!0.73!8.91!TUB;;chr11:12696071..12696086,+!p3@TEAD1!0.73!5.94!TEAD1;;chr19:13136130..13136165,+!p6@NFIX!0.73!5.94!NFIX;;chrX:70315688..70315709,+!p1@FOXO4!0.71!10.39!FOXO4;;chr8:72756063..72756125,-!p1@MSC!0.71!8.91!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.70!589.22!CEBPD;;chr10:77161504..77161530,-!p1@ZNF503!0.70!60.85!ZNF503;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!46.01!GLIS2;;chr15:66994663..66994680,+!p1@SMAD6!0.70!10.39!SMAD6;;chr1:8938709..8938720,-!p3@ENO1!0.69!216.69!ENO1;;chr3:178789522..178789564,-!p2@ZMAT3!0.69!32.65!ZMAT3;;chr7:150945754..150945789,-!p2@SMARCD3!0.69!13.36!SMARCD3;;chr5:43067583..43067606,+!p7@ZNF131!0.69!5.94!ZNF131;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.94!ZBTB16;;chr1:23886132..23886156,-!p2@ID3!0.69!4.45!ID3;;chr7:137686552..137686564,-!p9@CREB3L2!0.68!5.94!CREB3L2;;chr17:46126136..46126152,+!p1@NFE2L1!0.67!218.17!NFE2L1;;chr5:72744594..72744609,-!p1@FOXD1!0.67!19.29!FOXD1;;chr22:42269885..42269899,+!p4@SREBF2!0.67!5.94!SREBF2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.45!TBX18;;chr14:62162258..62162269,+!p2@HIF1A!0.65!38.59!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.26!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.91!NFATC4;;chr2:85981222..85981259,+!p2@ATOH8!0.64!5.94!ATOH8;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.94!GLIS3;;chr8:72756213..72756243,-!p5@MSC!0.63!4.45!MSC;;chr2:28618532..28618610,+!p4@FOSL2!0.62!5.94!FOSL2;;chr19:16435625..16435682,+!p1@KLF2!0.61!120.22!KLF2;;chr12:57504975..57505019,-!p2@STAT6!0.61!14.84!STAT6;;chr2:85197924..85197955,+!p3@KCMF1!0.61!13.36!KCMF1;;chr15:96874927..96874938,+!p8@NR2F2!0.61!7.42!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.61!4.45!ATF5;;chr2:46524537..46524553,+!p1@EPAS1!0.60!360.66!EPAS1;;chr12:124873357..124873401,-!p1@NCOR2!0.60!41.56!NCOR2;;chr13:45151403..45151433,-!p5@TSC22D1!0.60!7.42!TSC22D1;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.42!GLI2;;chr15:42749722..42749739,-!p2@ZFP106!0.60!5.94!ZFP106;;chr18:19749517..19749531,+!p3@GATA6!0.60!5.94!GATA6;;chr17:46687959..46688007,-!p2@HOXB7!0.60!4.45!HOXB7;;chr14:95236440..95236465,-!p1@GSC!0.60!2.97!GSC;;chr16:67198683..67198698,+!p2@HSF4!0.60!2.97!HSF4;;chr16:67881647..67881663,-!p3@CENPT!0.60!2.97!CENPT;;chr17:79881318..79881331,-!p7@MAFG!0.60!2.97!MAFG;;chr18:53255379..53255382,-!p45@TCF4!0.60!2.97!TCF4;;chr19:13135582..13135600,+!p3@NFIX!0.60!2.97!NFIX;;chr11:113930401..113930422,+!p3@ZBTB16!0.60!2.97!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.60!2.97!ZBTB16;;chr12:10870927..10870966,-!p5@CSDA!0.60!2.97!CSDA;;chr12:54394059..54394088,+!p3@HOXC9!0.60!2.97!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.97!HOXC9;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr12:54422268..54422278,+!p8@HOXC6!0.60!2.97!HOXC6;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.60!2.97!HOXC6;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr12:96588425..96588432,+!p8@ELK3!0.60!2.97!ELK3;;chr1:170632137..170632172,+!p10@PRRX1!0.60!2.97!PRRX1;;chr1:244219392..244219409,+!p5@ZNF238!0.60!2.97!ZNF238;;chr20:30433396..30433414,-!p1@FOXS1!0.60!2.97!FOXS1;;chr20:48808064..48808086,+!p15@CEBPB!0.60!2.97!CEBPB;;chr5:158527104..158527135,-!p4@EBF1!0.60!2.97!EBF1;;chr5:92922831..92922864,+!p14@NR2F1!0.60!2.97!NR2F1;;chr7:150102756..150102772,+!p5@ZNF775!0.60!2.97!ZNF775;;chr7:15726296..15726315,-!p1@MEOX2!0.60!2.97!MEOX2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!2.97!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.60!2.97!HOXA5;;chr8:25902876..25902936,-!p1@EBF2!0.60!2.97!EBF2;;chr8:55370487..55370503,+!p1@SOX17!0.60!2.97!SOX17;;chr8:72755987..72756002,-!p7@MSC!0.60!2.97!MSC;;chr2:114036488..114036504,-!p1@PAX8!0.60!2.97!PAX8;;chr2:177001290..177001315,+!p1@HOXD3!0.60!2.97!HOXD3;;chr2:85980903..85980914,+!p11@ATOH8!0.60!2.97!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!0.60!2.97!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.60!2.97!ATOH8;;chr3:25470156..25470227,+!p2@RARB!0.60!2.97!RARB;;chr12:52445218..52445237,+!p1@NR4A1!0.59!44.53!NR4A1;;chr2:27357446..27357475,-!p2@PREB!0.59!11.87!PREB;;chr2:66662281..66662308,+!p1@MEIS1!0.59!11.87!MEIS1;;chr12:56753869..56753930,-!p1@STAT2!0.58!154.35!STAT2;;chr8:49833978..49833996,-!p1@SNAI2!0.58!71.24!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.58!10.39!AHRR;;chr12:124827609..124827643,-!p9@NCOR2!0.58!4.45!NCOR2;;chr12:80084167..80084197,-!p5@PAWR!0.57!7.42!PAWR;;chr12:52430894..52430952,+!p3@NR4A1!0.57!5.94!NR4A1;;chr7:27135591..27135658,-!p1@HOXA1!0.57!5.94!HOXA1;;chr8:73921136..73921151,+!p2@TERF1!0.57!4.45!TERF1;;chr6:4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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 43: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=
-|created_by=
-|creation_date=
-|def=
 |has_quality=
-|is_a=EFO:0002091;;FF:0000002;;FF:0000141;;FF:0000210
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520perirenal%252c%2520donor1.CNhs12065.11469-119C2.hg38.nobarcode.ctss.bed.gz
+|id=FF:11469-119C2
+|is_a=EFO:0002091;;FF:0000141
+|is_obsolete=
+|library_id=CNhs12065
+|library_id_phase_based=2:CNhs12065
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11469
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACTTGA.11469
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11469
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACTTGA.11469
+|name=Preadipocyte - perirenal, donor1
 |namespace=FANTOM5
 |part_of=
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+|profile_hcage=CNhs12065,LSID838,release011,COMPLETED
+|profile_rnaseq=
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+|rna_od260/230=1.4
+|rna_od260/280=2.01
+|rna_position=C2
+|rna_rin=
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+|rna_tube_id=119C2
+|rna_weight_ug=29.6
+|rnaseq_library_id=SRhi10011.ACTTGA
+|sample_age=66
+|sample_category=primary cells
+|sample_cell_catalog=F-PR-F
+|sample_cell_line=
+|sample_cell_lot=lot:PR062602
+|sample_cell_type=preadipocyte
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Zenbio
+|sample_description=
+|sample_dev_stage=66 years old adult
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=C
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lumen;1.82113640666982e-48!GO:0031974;membrane-enclosed lumen;1.82113640666982e-48!GO:0044429;mitochondrial part;1.37433882973757e-47!GO:0019538;protein metabolic process;7.41459630696926e-47!GO:0009058;biosynthetic process;1.04040367746023e-46!GO:0005840;ribosome;2.05500619084882e-44!GO:0044260;cellular macromolecule metabolic process;2.78102008911292e-43!GO:0044267;cellular protein metabolic process;9.63005133733628e-42!GO:0006412;translation;8.50820502564186e-41!GO:0003735;structural constituent of ribosome;2.2984780278245e-40!GO:0003723;RNA binding;1.48343786754175e-39!GO:0044249;cellular biosynthetic process;2.00421782037889e-39!GO:0043170;macromolecule metabolic process;3.35294342677526e-39!GO:0005829;cytosol;2.76500086192848e-38!GO:0031967;organelle envelope;4.00255034545835e-37!GO:0031975;envelope;5.29254274786332e-37!GO:0009059;macromolecule biosynthetic process;6.05674014522458e-37!GO:0033279;ribosomal subunit;4.6503987734656e-36!GO:0044428;nuclear part;6.97749790798386e-35!GO:0015031;protein transport;3.96873631492942e-33!GO:0005740;mitochondrial envelope;5.27047517488569e-33!GO:0043234;protein complex;9.44425901013794e-33!GO:0033036;macromolecule localization;1.09512091948227e-32!GO:0008104;protein localization;1.91825585660852e-31!GO:0016043;cellular component organization and biogenesis;2.27737523295508e-31!GO:0031966;mitochondrial membrane;2.73964144750082e-31!GO:0045184;establishment of protein localization;3.31021136059644e-31!GO:0005783;endoplasmic reticulum;1.05810049885019e-29!GO:0019866;organelle inner membrane;2.01986447084955e-28!GO:0005743;mitochondrial inner membrane;7.20951949554826e-28!GO:0006396;RNA processing;1.5765886921825e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49938722754944e-25!GO:0046907;intracellular transport;2.80046773289229e-25!GO:0044432;endoplasmic reticulum part;8.48648595751753e-24!GO:0006119;oxidative phosphorylation;1.1787156274143e-23!GO:0016071;mRNA metabolic process;3.72745201374381e-22!GO:0012505;endomembrane system;4.17300252094878e-22!GO:0044455;mitochondrial membrane part;1.5394039547858e-21!GO:0031981;nuclear lumen;1.62257632866069e-21!GO:0006886;intracellular protein transport;1.63156339845582e-21!GO:0006457;protein folding;7.91310268698904e-21!GO:0008380;RNA splicing;1.06641885831815e-19!GO:0044445;cytosolic part;2.52883943230881e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65048333431333e-19!GO:0015934;large ribosomal subunit;3.30182418885225e-19!GO:0006397;mRNA processing;3.38344702887253e-19!GO:0031980;mitochondrial lumen;1.88723178157797e-18!GO:0005759;mitochondrial matrix;1.88723178157797e-18!GO:0005794;Golgi apparatus;2.0947037005016e-18!GO:0005746;mitochondrial respiratory chain;2.75533586722893e-18!GO:0065003;macromolecular complex assembly;3.98362024689531e-18!GO:0048770;pigment granule;5.37629557753323e-18!GO:0042470;melanosome;5.37629557753323e-18!GO:0015935;small ribosomal subunit;8.86416685365262e-18!GO:0051186;cofactor metabolic process;2.45926136188685e-17!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.08534620964983e-17!GO:0022607;cellular component assembly;9.06797927161621e-17!GO:0005789;endoplasmic reticulum membrane;1.38318618942367e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.77789945321766e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.42989679999497e-16!GO:0003954;NADH dehydrogenase activity;7.42989679999497e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.42989679999497e-16!GO:0051641;cellular localization;7.69979725439604e-16!GO:0051649;establishment of cellular localization;1.26633938655496e-15!GO:0005634;nucleus;1.99876064385561e-15!GO:0051082;unfolded protein binding;6.08825766799543e-15!GO:0016491;oxidoreductase activity;9.20729797481276e-15!GO:0048193;Golgi vesicle transport;1.46059916046697e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.24332812688525e-14!GO:0006996;organelle organization and biogenesis;2.28767180832794e-14!GO:0009055;electron carrier activity;2.84508639007546e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.02015764838591e-14!GO:0045271;respiratory chain complex I;3.02015764838591e-14!GO:0005747;mitochondrial respiratory chain complex I;3.02015764838591e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31983585733278e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.37485393297442e-14!GO:0042773;ATP synthesis coupled electron transport;4.37485393297442e-14!GO:0005681;spliceosome;4.61081031499834e-14!GO:0006732;coenzyme metabolic process;1.05246947837925e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05789646545322e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42436685712487e-13!GO:0016462;pyrophosphatase activity;1.49829995768701e-13!GO:0016192;vesicle-mediated transport;1.77060141502017e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97666559596686e-13!GO:0005761;mitochondrial ribosome;2.52803599158862e-13!GO:0000313;organellar ribosome;2.52803599158862e-13!GO:0043228;non-membrane-bound organelle;4.0646594696058e-13!GO:0043232;intracellular non-membrane-bound organelle;4.0646594696058e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.36312548615373e-13!GO:0016874;ligase activity;8.13265553850368e-13!GO:0017111;nucleoside-triphosphatase activity;1.08451049535396e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.11802169285647e-12!GO:0044248;cellular catabolic process;1.20398963248719e-12!GO:0008134;transcription factor binding;1.49494676387786e-12!GO:0005654;nucleoplasm;1.967356181116e-12!GO:0006605;protein targeting;2.09958422691091e-12!GO:0022618;protein-RNA complex assembly;2.24657027526354e-12!GO:0006512;ubiquitin cycle;6.96362357713101e-12!GO:0043285;biopolymer catabolic process;8.81705554489483e-12!GO:0009057;macromolecule catabolic process;9.0273339963449e-12!GO:0044265;cellular macromolecule catabolic process;9.27483934999016e-12!GO:0012501;programmed cell death;2.91590088610157e-11!GO:0008135;translation factor activity, nucleic acid binding;5.42046515148344e-11!GO:0044451;nucleoplasm part;6.21246531026592e-11!GO:0006915;apoptosis;6.87130683210759e-11!GO:0005793;ER-Golgi intermediate compartment;7.7949387785718e-11!GO:0006091;generation of precursor metabolites and energy;7.91145395955362e-11!GO:0043283;biopolymer metabolic process;1.51646822496619e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.16175080110743e-10!GO:0008219;cell death;2.29924160187282e-10!GO:0016265;death;2.29924160187282e-10!GO:0048523;negative regulation of cellular process;2.86903766853097e-10!GO:0044257;cellular protein catabolic process;3.4972326700294e-10!GO:0030163;protein catabolic process;4.06556409547135e-10!GO:0019941;modification-dependent protein catabolic process;4.07672220007867e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.07672220007867e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.66310760733349e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.71289815655644e-10!GO:0000166;nucleotide binding;8.55066875309498e-10!GO:0043412;biopolymer modification;1.05526215917587e-09!GO:0005788;endoplasmic reticulum lumen;1.17171888042653e-09!GO:0010467;gene expression;1.30741837121192e-09!GO:0005768;endosome;1.49587837150224e-09!GO:0005773;vacuole;1.53669059413891e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.60862695781661e-09!GO:0005730;nucleolus;2.62570154390892e-09!GO:0009259;ribonucleotide metabolic process;2.78203419868464e-09!GO:0006163;purine nucleotide metabolic process;3.69715126327498e-09!GO:0009150;purine ribonucleotide metabolic process;4.05390113167936e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.41345798347377e-09!GO:0048519;negative regulation of biological process;4.89761981155663e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.16717138451886e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.16717138451886e-09!GO:0006464;protein modification process;6.31007431650918e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.51222808041056e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.51222808041056e-09!GO:0015986;ATP synthesis coupled proton transport;8.48409114251669e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.48409114251669e-09!GO:0009141;nucleoside triphosphate metabolic process;8.66014164416645e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.07565537218127e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.07565537218127e-09!GO:0006164;purine nucleotide biosynthetic process;1.28350773254492e-08!GO:0016049;cell growth;1.31296726952144e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.33100630532863e-08!GO:0051188;cofactor biosynthetic process;1.61028390892229e-08!GO:0008361;regulation of cell size;1.64560808988483e-08!GO:0009056;catabolic process;2.33884586031593e-08!GO:0009260;ribonucleotide biosynthetic process;2.36689769922457e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.69984111281444e-08!GO:0000375;RNA splicing, via transesterification reactions;2.69984111281444e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.69984111281444e-08!GO:0003712;transcription cofactor activity;3.05893241061578e-08!GO:0000323;lytic vacuole;3.05893241061578e-08!GO:0005764;lysosome;3.05893241061578e-08!GO:0003743;translation initiation factor activity;3.09995968572558e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.09995968572558e-08!GO:0043069;negative regulation of programmed cell death;3.79474631966173e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.13067331917551e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.33201225450757e-08!GO:0001558;regulation of cell growth;4.36646390839247e-08!GO:0006413;translational initiation;4.51863445192084e-08!GO:0019829;cation-transporting ATPase activity;5.13653092456079e-08!GO:0031988;membrane-bound vesicle;5.17525981990017e-08!GO:0044431;Golgi apparatus part;5.50235341600947e-08!GO:0009060;aerobic respiration;6.20042715785471e-08!GO:0043066;negative regulation of apoptosis;6.95429180553428e-08!GO:0006399;tRNA metabolic process;7.8743456701012e-08!GO:0046034;ATP metabolic process;8.269668259532e-08!GO:0006446;regulation of translational initiation;9.25156094846384e-08!GO:0006754;ATP biosynthetic process;9.37439626747217e-08!GO:0006753;nucleoside phosphate metabolic process;9.37439626747217e-08!GO:0008654;phospholipid biosynthetic process;1.56604211237878e-07!GO:0044262;cellular carbohydrate metabolic process;1.61026905451007e-07!GO:0008639;small protein conjugating enzyme activity;1.64222404903977e-07!GO:0042254;ribosome biogenesis and assembly;2.02984079064362e-07!GO:0045333;cellular respiration;2.47718407603505e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.82168014715377e-07!GO:0043067;regulation of programmed cell death;2.96240086302071e-07!GO:0017076;purine nucleotide binding;2.98172336858531e-07!GO:0006916;anti-apoptosis;3.20219460414176e-07!GO:0030120;vesicle coat;3.41719618824127e-07!GO:0030662;coated vesicle membrane;3.41719618824127e-07!GO:0004842;ubiquitin-protein ligase activity;3.73472092072968e-07!GO:0042981;regulation of apoptosis;4.12377596157136e-07!GO:0009117;nucleotide metabolic process;4.54962935308905e-07!GO:0008565;protein transporter activity;4.79201012487067e-07!GO:0006461;protein complex assembly;5.17026735398227e-07!GO:0019787;small conjugating protein ligase activity;5.33567387366391e-07!GO:0032553;ribonucleotide binding;7.08285219485249e-07!GO:0032555;purine ribonucleotide binding;7.08285219485249e-07!GO:0006913;nucleocytoplasmic transport;7.60774574564725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.71187627733704e-07!GO:0003714;transcription corepressor activity;1.0193838903209e-06!GO:0017038;protein import;1.04068706181835e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.07047762772677e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.07047762772677e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.07047762772677e-06!GO:0006752;group transfer coenzyme metabolic process;1.13820654765933e-06!GO:0042623;ATPase activity, coupled;1.13820654765933e-06!GO:0051169;nuclear transport;1.15181579456415e-06!GO:0007005;mitochondrion organization and biogenesis;1.16201642098249e-06!GO:0044440;endosomal part;1.20322410669672e-06!GO:0010008;endosome membrane;1.20322410669672e-06!GO:0009108;coenzyme biosynthetic process;1.20322410669672e-06!GO:0031410;cytoplasmic vesicle;1.2148772526934e-06!GO:0008610;lipid biosynthetic process;1.21654515861395e-06!GO:0031982;vesicle;1.32485003676614e-06!GO:0005635;nuclear envelope;1.38504598201898e-06!GO:0043687;post-translational protein modification;1.42999899551057e-06!GO:0040008;regulation of growth;1.45836565986065e-06!GO:0016887;ATPase activity;1.47091531440673e-06!GO:0043038;amino acid activation;1.73594431037296e-06!GO:0006418;tRNA aminoacylation for protein translation;1.73594431037296e-06!GO:0043039;tRNA aminoacylation;1.73594431037296e-06!GO:0051187;cofactor catabolic process;1.9075186745687e-06!GO:0016787;hydrolase activity;2.47860778508801e-06!GO:0048475;coated membrane;2.81049621785862e-06!GO:0030117;membrane coat;2.81049621785862e-06!GO:0006099;tricarboxylic acid cycle;3.07215619388504e-06!GO:0046356;acetyl-CoA catabolic process;3.07215619388504e-06!GO:0045454;cell redox homeostasis;3.14204044442985e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.48090388307587e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.51844487629418e-06!GO:0031965;nuclear membrane;3.53167743315816e-06!GO:0016881;acid-amino acid ligase activity;3.57961227153346e-06!GO:0045259;proton-transporting ATP synthase complex;3.69572537429577e-06!GO:0000139;Golgi membrane;5.16471360556732e-06!GO:0003924;GTPase activity;5.31829449248603e-06!GO:0009109;coenzyme catabolic process;5.59164212595692e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.59164212595692e-06!GO:0006084;acetyl-CoA metabolic process;5.83977190858656e-06!GO:0051789;response to protein stimulus;5.91156169041118e-06!GO:0006986;response to unfolded protein;5.91156169041118e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.63760369465737e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.88037587362764e-06!GO:0006082;organic acid metabolic process;9.63533453216272e-06!GO:0030133;transport vesicle;1.00295258581293e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.01439217908523e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.03508226611076e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.05395303016526e-05!GO:0006259;DNA metabolic process;1.20234961794529e-05!GO:0019752;carboxylic acid metabolic process;1.24718948941112e-05!GO:0016853;isomerase activity;1.29058989905744e-05!GO:0005762;mitochondrial large ribosomal subunit;1.30277234663569e-05!GO:0000315;organellar large ribosomal subunit;1.30277234663569e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.31301251281352e-05!GO:0015399;primary active transmembrane transporter activity;1.31301251281352e-05!GO:0046474;glycerophospholipid biosynthetic process;1.60668743135444e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.0458353338005e-05!GO:0006118;electron transport;2.46426491988833e-05!GO:0030554;adenyl nucleotide binding;2.4836030948868e-05!GO:0005798;Golgi-associated vesicle;2.55952028527509e-05!GO:0016604;nuclear body;2.71465179494145e-05!GO:0019867;outer membrane;2.77615271637486e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.02584138471073e-05!GO:0006979;response to oxidative stress;3.48967420325421e-05!GO:0016564;transcription repressor activity;3.48967420325421e-05!GO:0005791;rough endoplasmic reticulum;4.06385632237828e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.2388270705976e-05!GO:0032559;adenyl ribonucleotide binding;4.52163737573913e-05!GO:0031968;organelle outer membrane;4.52163737573913e-05!GO:0051246;regulation of protein metabolic process;5.66208920741302e-05!GO:0005524;ATP binding;5.96017064152781e-05!GO:0030029;actin filament-based process;6.78078691355101e-05!GO:0000151;ubiquitin ligase complex;8.14323375439123e-05!GO:0005770;late endosome;8.67686606377934e-05!GO:0044255;cellular lipid metabolic process;0.000105447955560829!GO:0006613;cotranslational protein targeting to membrane;0.000110806101941122!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000112098665092995!GO:0044453;nuclear membrane part;0.000112383800536836!GO:0030867;rough endoplasmic reticulum membrane;0.000114119255247141!GO:0031252;leading edge;0.000114119255247141!GO:0006364;rRNA processing;0.00011983957884231!GO:0043492;ATPase activity, coupled to movement of substances;0.000120040062399487!GO:0016859;cis-trans isomerase activity;0.000123643318350089!GO:0016567;protein ubiquitination;0.000130397825307731!GO:0045786;negative regulation of progression through cell cycle;0.000132191105917295!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000136806043161696!GO:0004298;threonine endopeptidase activity;0.000150283928261814!GO:0051726;regulation of cell cycle;0.000154833603828956!GO:0016607;nuclear speck;0.000166540551421852!GO:0005741;mitochondrial outer membrane;0.000167104487589479!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000172927269528104!GO:0006366;transcription from RNA polymerase II promoter;0.000173635795971869!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000175681073792357!GO:0016044;membrane organization and biogenesis;0.000177353674075456!GO:0000245;spliceosome assembly;0.000180203979050231!GO:0065002;intracellular protein transport across a membrane;0.000181229805013899!GO:0016072;rRNA metabolic process;0.000181630291141474!GO:0043623;cellular protein complex assembly;0.000186843248923327!GO:0032446;protein modification by small protein conjugation;0.000190095239014246!GO:0016740;transferase activity;0.000194798465095542!GO:0030176;integral to endoplasmic reticulum membrane;0.000202030382931239!GO:0000074;regulation of progression through cell cycle;0.000216750535347694!GO:0000314;organellar small ribosomal subunit;0.000216791558221264!GO:0005763;mitochondrial small ribosomal subunit;0.000216791558221264!GO:0005905;coated pit;0.000232392223811488!GO:0008026;ATP-dependent helicase activity;0.000233512158943911!GO:0009165;nucleotide biosynthetic process;0.000234964469766223!GO:0004576;oligosaccharyl transferase activity;0.000246079590247448!GO:0046467;membrane lipid biosynthetic process;0.000252919944184674!GO:0005769;early endosome;0.000276152003422788!GO:0008092;cytoskeletal protein binding;0.000292439931472312!GO:0005048;signal sequence binding;0.000364160189305851!GO:0051170;nuclear import;0.000373113252684841!GO:0006606;protein import into nucleus;0.000409482537774781!GO:0008250;oligosaccharyl transferase complex;0.00042392776974792!GO:0005667;transcription factor complex;0.00044771070321985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000465965349146502!GO:0016126;sterol biosynthetic process;0.00054378417130233!GO:0030663;COPI coated vesicle membrane;0.000543973822861918!GO:0030126;COPI vesicle coat;0.000543973822861918!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000557105669074094!GO:0019843;rRNA binding;0.000602112395898561!GO:0005975;carbohydrate metabolic process;0.000607181151149237!GO:0006839;mitochondrial transport;0.000607181151149237!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000613611140612638!GO:0031324;negative regulation of cellular metabolic process;0.000627349686602948!GO:0007049;cell cycle;0.000642454030383801!GO:0005525;GTP binding;0.000644304571953875!GO:0046489;phosphoinositide biosynthetic process;0.000683001767833249!GO:0007040;lysosome organization and biogenesis;0.000707884132228435!GO:0006793;phosphorus metabolic process;0.000733752369036742!GO:0006796;phosphate metabolic process;0.000733752369036742!GO:0006650;glycerophospholipid metabolic process;0.000763823678793913!GO:0022890;inorganic cation transmembrane transporter activity;0.000844411665070736!GO:0048468;cell development;0.000853282565231461!GO:0006818;hydrogen transport;0.000867682822621919!GO:0043284;biopolymer biosynthetic process;0.000872574262570203!GO:0016860;intramolecular oxidoreductase activity;0.000916313637369191!GO:0051920;peroxiredoxin activity;0.000916313637369191!GO:0015992;proton transport;0.00094874292033334!GO:0030137;COPI-coated vesicle;0.000950419927199795!GO:0006629;lipid metabolic process;0.00110643065937721!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00114579576399107!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0011999973072611!GO:0018196;peptidyl-asparagine modification;0.00121745232934336!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00121745232934336!GO:0007243;protein kinase cascade;0.00126695248309136!GO:0005885;Arp2/3 protein complex;0.00133894833995515!GO:0030308;negative regulation of cell growth;0.00134432171540896!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00144952281184306!GO:0007050;cell cycle arrest;0.00153611532806471!GO:0005520;insulin-like growth factor binding;0.00158928159553746!GO:0006612;protein targeting to membrane;0.00160193901959991!GO:0045792;negative regulation of cell size;0.00168015963468267!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00177718297743837!GO:0006974;response to DNA damage stimulus;0.00181411030807974!GO:0005774;vacuolar membrane;0.0018883555699005!GO:0043681;protein import into mitochondrion;0.00194518988558773!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00217957595133486!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00217957595133486!GO:0006643;membrane lipid metabolic process;0.00220012096963592!GO:0005643;nuclear pore;0.00225764541605782!GO:0016779;nucleotidyltransferase activity;0.00228424007289324!GO:0009892;negative regulation of metabolic process;0.00228424007289324!GO:0007033;vacuole organization and biogenesis;0.00230246434301804!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00238234930049624!GO:0015002;heme-copper terminal oxidase activity;0.00238234930049624!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00238234930049624!GO:0004129;cytochrome-c oxidase activity;0.00238234930049624!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00239845448208984!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00240019557626234!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00240019557626234!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00240019557626234!GO:0016310;phosphorylation;0.00240019557626234!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00242250094747188!GO:0050662;coenzyme binding;0.00254745739657746!GO:0046483;heterocycle metabolic process;0.00257991268040661!GO:0007006;mitochondrial membrane organization and biogenesis;0.00269093134024656!GO:0046930;pore complex;0.00290895791425288!GO:0031072;heat shock protein binding;0.00298062643478685!GO:0032561;guanyl ribonucleotide binding;0.00309847429968849!GO:0019001;guanyl nucleotide binding;0.00309847429968849!GO:0048522;positive regulation of cellular process;0.00312647207272313!GO:0003899;DNA-directed RNA polymerase activity;0.00314200265265034!GO:0004386;helicase activity;0.00326176606483827!GO:0048487;beta-tubulin binding;0.00333577663104844!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00337274112391715!GO:0006695;cholesterol biosynthetic process;0.00346485228091172!GO:0006383;transcription from RNA polymerase III promoter;0.00346485228091172!GO:0006790;sulfur metabolic process;0.00349946894884852!GO:0006693;prostaglandin metabolic process;0.00359278454344381!GO:0006692;prostanoid metabolic process;0.00359278454344381!GO:0045926;negative regulation of growth;0.00362486225356758!GO:0006414;translational elongation;0.00400161720272313!GO:0030659;cytoplasmic vesicle membrane;0.00420982272679281!GO:0009719;response to endogenous stimulus;0.00427848446408523!GO:0044437;vacuolar part;0.00435905618273939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00437333034040371!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00438131146060628!GO:0003697;single-stranded DNA binding;0.00441259796246183!GO:0006506;GPI anchor biosynthetic process;0.00456273567507261!GO:0022402;cell cycle process;0.0046761481041495!GO:0006626;protein targeting to mitochondrion;0.00477179510745889!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048281186540432!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048281186540432!GO:0006891;intra-Golgi vesicle-mediated transport;0.00484146324247013!GO:0016125;sterol metabolic process;0.00499064991575626!GO:0003724;RNA helicase activity;0.00507198798489257!GO:0003713;transcription coactivator activity;0.00507485033321268!GO:0006497;protein amino acid lipidation;0.00510255918259498!GO:0030132;clathrin coat of coated pit;0.00519243027267456!GO:0043021;ribonucleoprotein binding;0.00534770947043554!GO:0051287;NAD binding;0.0054836254681665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0056663816362601!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.005803335125218!GO:0065009;regulation of a molecular function;0.00590382706630753!GO:0006509;membrane protein ectodomain proteolysis;0.00599673174505048!GO:0033619;membrane protein proteolysis;0.00599673174505048!GO:0004177;aminopeptidase activity;0.00600397912625495!GO:0003779;actin binding;0.00601548890610877!GO:0006644;phospholipid metabolic process;0.00610193123909861!GO:0019318;hexose metabolic process;0.006323459464453!GO:0005765;lysosomal membrane;0.00634194585811153!GO:0006740;NADPH regeneration;0.0065825764273091!GO:0006098;pentose-phosphate shunt;0.0065825764273091!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00692743457930952!GO:0006066;alcohol metabolic process;0.00719906775807063!GO:0001516;prostaglandin biosynthetic process;0.00725820748934265!GO:0046457;prostanoid biosynthetic process;0.00725820748934265!GO:0000030;mannosyltransferase activity;0.00740346095462951!GO:0006505;GPI anchor metabolic process;0.00756886563291251!GO:0006897;endocytosis;0.0075733269530262!GO:0010324;membrane invagination;0.0075733269530262!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00796206647572415!GO:0017166;vinculin binding;0.00807578095640828!GO:0006778;porphyrin metabolic process;0.00809585639585321!GO:0033013;tetrapyrrole metabolic process;0.00809585639585321!GO:0030041;actin filament polymerization;0.00816000528459017!GO:0005996;monosaccharide metabolic process;0.0083297221839242!GO:0043433;negative regulation of transcription factor activity;0.00843467414334559!GO:0050811;GABA receptor binding;0.00861071641376534!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00881741434963798!GO:0048471;perinuclear region of cytoplasm;0.00896640061610877!GO:0051427;hormone receptor binding;0.00921428888449846!GO:0030658;transport vesicle membrane;0.0093097845931092!GO:0005869;dynactin complex;0.00939766872595148!GO:0019899;enzyme binding;0.00948215411587962!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00952812781119403!GO:0008033;tRNA processing;0.00954771164760016!GO:0031902;late endosome membrane;0.00970778627088546!GO:0030134;ER to Golgi transport vesicle;0.0102104006950461!GO:0046519;sphingoid metabolic process;0.0105388490721236!GO:0006807;nitrogen compound metabolic process;0.0107377646575387!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0112020865629478!GO:0001726;ruffle;0.0112020865629478!GO:0030880;RNA polymerase complex;0.0113070977503684!GO:0016563;transcription activator activity;0.0115748368291533!GO:0043488;regulation of mRNA stability;0.0124264809343611!GO:0043487;regulation of RNA stability;0.0124264809343611!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0125341846213859!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0126462091131186!GO:0051540;metal cluster binding;0.0127080263406442!GO:0051536;iron-sulfur cluster binding;0.0127080263406442!GO:0042168;heme metabolic process;0.0127965773096647!GO:0051252;regulation of RNA metabolic process;0.0128581235116397!GO:0030384;phosphoinositide metabolic process;0.0129423662202057!GO:0008632;apoptotic program;0.0135807190906196!GO:0042158;lipoprotein biosynthetic process;0.0136229170430144!GO:0043566;structure-specific DNA binding;0.0137867793657494!GO:0044433;cytoplasmic vesicle part;0.0137892221669715!GO:0048500;signal recognition particle;0.0138541090116464!GO:0006281;DNA repair;0.0142679674474475!GO:0016481;negative regulation of transcription;0.0144825830700196!GO:0048037;cofactor binding;0.0145585892502914!GO:0008154;actin polymerization and/or depolymerization;0.014665794242807!GO:0003746;translation elongation factor activity;0.014665794242807!GO:0035257;nuclear hormone receptor binding;0.014665794242807!GO:0046394;carboxylic acid biosynthetic process;0.014665794242807!GO:0016053;organic acid biosynthetic process;0.014665794242807!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0149049151355199!GO:0001527;microfibril;0.0149202239367996!GO:0016272;prefoldin complex;0.0151039268485906!GO:0031418;L-ascorbic acid binding;0.0152930471021295!GO:0048518;positive regulation of biological process;0.0162769028739176!GO:0030145;manganese ion binding;0.0164068580114578!GO:0006633;fatty acid biosynthetic process;0.0164107022006472!GO:0006595;polyamine metabolic process;0.01672604084773!GO:0035258;steroid hormone receptor binding;0.01672604084773!GO:0000902;cell morphogenesis;0.0167716562034304!GO:0032989;cellular structure morphogenesis;0.0167716562034304!GO:0045045;secretory pathway;0.0167716562034304!GO:0016197;endosome transport;0.0169092201331703!GO:0051329;interphase of mitotic cell cycle;0.0170271883037171!GO:0005583;fibrillar collagen;0.0175225486590073!GO:0051325;interphase;0.0176566363448925!GO:0044420;extracellular matrix part;0.0178008811255285!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0178431903293745!GO:0008139;nuclear localization sequence binding;0.0178655980188106!GO:0006950;response to stress;0.0178780255884534!GO:0030118;clathrin coat;0.0179435046078343!GO:0033559;unsaturated fatty acid metabolic process;0.0180975361737986!GO:0006636;unsaturated fatty acid biosynthetic process;0.0180975361737986!GO:0030127;COPII vesicle coat;0.0186316231356204!GO:0012507;ER to Golgi transport vesicle membrane;0.0186316231356204!GO:0032787;monocarboxylic acid metabolic process;0.0189478772831244!GO:0006007;glucose catabolic process;0.0196453488318845!GO:0003756;protein disulfide isomerase activity;0.0196770311670925!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0196770311670925!GO:0001666;response to hypoxia;0.019876493203503!GO:0030660;Golgi-associated vesicle membrane;0.0199561000373697!GO:0031901;early endosome membrane;0.0201105208174089!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0201105208174089!GO:0006631;fatty acid metabolic process;0.0203161741564164!GO:0006749;glutathione metabolic process;0.0204925108515302!GO:0006672;ceramide metabolic process;0.0211564793013631!GO:0006892;post-Golgi vesicle-mediated transport;0.02195858312791!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0222018743913743!GO:0000428;DNA-directed RNA polymerase complex;0.0222018743913743!GO:0006767;water-soluble vitamin metabolic process;0.0224030248798172!GO:0006354;RNA elongation;0.0224030248798172!GO:0031301;integral to organelle membrane;0.0225947801444857!GO:0030027;lamellipodium;0.0228610054028961!GO:0005581;collagen;0.0228610054028961!GO:0007010;cytoskeleton organization and biogenesis;0.0234276152269432!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0235304038427386!GO:0008186;RNA-dependent ATPase activity;0.0237712843751327!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.023862397782924!GO:0007030;Golgi organization and biogenesis;0.0239292633828395!GO:0006779;porphyrin biosynthetic process;0.0240593750149938!GO:0033014;tetrapyrrole biosynthetic process;0.0240593750149938!GO:0005862;muscle thin filament tropomyosin;0.024125757659119!GO:0009967;positive regulation of signal transduction;0.0249600453698689!GO:0005684;U2-dependent spliceosome;0.0253039746671434!GO:0009308;amine metabolic process;0.0254078027124651!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0257440619599104!GO:0045047;protein targeting to ER;0.0257440619599104!GO:0008180;signalosome;0.0259215453633521!GO:0006739;NADP metabolic process;0.0262364666994619!GO:0000049;tRNA binding;0.0266092285966337!GO:0008652;amino acid biosynthetic process;0.0266092285966337!GO:0008147;structural constituent of bone;0.0274811195376375!GO:0031529;ruffle organization and biogenesis;0.0275033046369282!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0275462408192361!GO:0006518;peptide metabolic process;0.0283026698846402!GO:0000287;magnesium ion binding;0.0285670203418107!GO:0007264;small GTPase mediated signal transduction;0.0286599494975969!GO:0008484;sulfuric ester hydrolase activity;0.0293561140029262!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0293764812894855!GO:0035035;histone acetyltransferase binding;0.0297960053653064!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0303248992816836!GO:0006635;fatty acid beta-oxidation;0.0321003617198575!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0321211902465521!GO:0004784;superoxide dismutase activity;0.0321211902465521!GO:0008312;7S RNA binding;0.0326743949404719!GO:0042802;identical protein binding;0.0327047946658551!GO:0005832;chaperonin-containing T-complex;0.033836010740899!GO:0012506;vesicle membrane;0.0340916116525607!GO:0007034;vacuolar transport;0.0349273551701868!GO:0051087;chaperone binding;0.0349273551701868!GO:0006914;autophagy;0.0358630927206412!GO:0051101;regulation of DNA binding;0.0361981795081083!GO:0005777;peroxisome;0.0361981795081083!GO:0042579;microbody;0.0361981795081083!GO:0048144;fibroblast proliferation;0.0372568071947932!GO:0048145;regulation of fibroblast proliferation;0.0372568071947932!GO:0006783;heme biosynthetic process;0.0380930933183678!GO:0016408;C-acyltransferase activity;0.0384029501133574!GO:0050178;phenylpyruvate tautomerase activity;0.0384029501133574!GO:0008203;cholesterol metabolic process;0.0386168546915334!GO:0051235;maintenance of localization;0.0386347741733809!GO:0051128;regulation of cellular component organization and biogenesis;0.0392056677098544!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0394569697641087!GO:0003729;mRNA binding;0.0398088672418702!GO:0031543;peptidyl-proline dioxygenase activity;0.0403831816048189!GO:0065004;protein-DNA complex assembly;0.0404093894613944!GO:0051168;nuclear export;0.0404404127269253!GO:0030125;clathrin vesicle coat;0.0406037818022725!GO:0030665;clathrin coated vesicle membrane;0.0406037818022725!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0407283284645547!GO:0010257;NADH dehydrogenase complex assembly;0.0407283284645547!GO:0033108;mitochondrial respiratory chain complex assembly;0.0407283284645547!GO:0051098;regulation of binding;0.0417229154720237!GO:0006289;nucleotide-excision repair;0.0420862720748231!GO:0006323;DNA packaging;0.042588406944455!GO:0006733;oxidoreduction coenzyme metabolic process;0.0428264862000878!GO:0006403;RNA localization;0.0452378462026631!GO:0050657;nucleic acid transport;0.045516880999803!GO:0051236;establishment of RNA localization;0.045516880999803!GO:0050658;RNA transport;0.045516880999803!GO:0006022;aminoglycan metabolic process;0.0461309563534702!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0464537444544085!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0464537444544085!GO:0006769;nicotinamide metabolic process;0.0465191595999112!GO:0030503;regulation of cell redox homeostasis;0.0465595261444993!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0466167973107247!GO:0030032;lamellipodium biogenesis;0.0470546536419938!GO:0007041;lysosomal transport;0.0471054235899884!GO:0006520;amino acid metabolic process;0.0471054235899884!GO:0003923;GPI-anchor transamidase activity;0.0471054235899884!GO:0016255;attachment of GPI anchor to protein;0.0471054235899884!GO:0042765;GPI-anchor transamidase complex;0.0471054235899884!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0474715901616173!GO:0005901;caveola;0.0480641991166487!GO:0004004;ATP-dependent RNA helicase activity;0.0490313148546811!GO:0022408;negative regulation of cell-cell adhesion;0.0492889495284612!GO:0031589;cell-substrate adhesion;0.0494944599924497!GO:0051539;4 iron, 4 sulfur cluster binding;0.0495026444829519!GO:0004364;glutathione transferase activity;0.0496351441166693
+|sample_id=11469
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=kidney
+|top_motifs=RXRA_VDR{dimer}:2.41927022559;GLI1..3:2.37941937281;HES1:2.17622079625;HIF1A:2.1309601428;ZNF423:2.11298124188;IKZF1:2.09602520196;FOXL1:2.03776090159;ESR1:2.02700534285;ATF6:2.01968948465;GZF1:1.95093549042;SMAD1..7,9:1.90900390379;TP53:1.80130811634;TAL1_TCF{3,4,12}:1.77107875055;TFAP4:1.73529229069;EBF1:1.71666614113;MAFB:1.67814050078;HMX1:1.54205230305;SRF:1.43890509148;PAX1,9:1.35850122512;HOX{A5,B5}:1.35844191246;ZNF238:1.31990781739;UFEwm:1.2829232598;ALX4:1.27158945075;TEAD1:1.23011055078;RXR{A,B,G}:1.17748952214;ZNF148:1.17587322847;ESRRA:1.15403113811;HAND1,2:1.15399613265;NKX2-2,8:1.12097793659;XBP1:1.10526907851;bHLH_family:1.02206161207;TLX1..3_NFIC{dimer}:1.00753030039;NKX3-1:0.993143486995;HOX{A6,A7,B6,B7}:0.885118842702;GTF2A1,2:0.8763712977;NR6A1:0.874358606381;TFCP2:0.803830708095;TBX4,5:0.776843561158;NKX3-2:0.745020386669;TBP:0.735921637883;HIC1:0.70753674527;TFAP2B:0.699905038864;T:0.683329440888;NHLH1,2:0.672837388169;KLF4:0.661573245003;SPZ1:0.624769540842;VSX1,2:0.619664866115;GCM1,2:0.600334396591;NKX2-1,4:0.573237125414;MYBL2:0.548192573091;GFI1B:0.529837497435;MTF1:0.521197213521;EVI1:0.450557969962;NFE2L1:0.444580404928;AR:0.436263149287;EN1,2:0.431999545235;HLF:0.414251431968;GTF2I:0.40303643561;MAZ:0.366174450766;LHX3,4:0.306859728264;NR5A1,2:0.280280626952;TFAP2{A,C}:0.271949662386;MEF2{A,B,C,D}:0.264213341623;PAX6:0.25489710512;SOX17:0.237279084116;XCPE1{core}:0.21665388363;CEBPA,B_DDIT3:0.200408759761;POU6F1:0.188423468651;HNF1A:0.174559372234;PPARG:0.17174938261;RREB1:0.170513543927;FOXA2:0.163196655937;NR3C1:0.162751416491;NFATC1..3:0.127400687365;REST:0.117195776841;NFIL3:0.11343645758;DBP:0.107743474699;MTE{core}:0.0954377221447;NFE2L2:0.0852220196875;ZIC1..3:0.0742931917532;ARID5B:0.0737869305108;FOXO1,3,4:0.0651991941152;HMGA1,2:0.032797485846;CRX:0.0260442388956;SOX5:0.015446456891;NANOG{mouse}:0.00798197696961;PATZ1:-0.00479977396433;LEF1_TCF7_TCF7L1,2:-0.0050085104077;HNF4A_NR2F1,2:-0.0141179559266;STAT2,4,6:-0.0329631392012;PAX5:-0.0727351913979;BACH2:-0.0846040566532;FOSL2:-0.0847015231988;TEF:-0.0978781299207;HOX{A4,D4}:-0.118570498674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.146094484703;FOS_FOS{B,L1}_JUN{B,D}:-0.156106736067;ZBTB6:-0.188280451105;FOX{F1,F2,J1}:-0.193911737048;SNAI1..3:-0.211230499013;MYOD1:-0.240167580771;PRRX1,2:-0.285875671625;ADNP_IRX_SIX_ZHX:-0.290512568819;MYFfamily:-0.311583666537;HSF1,2:-0.322646936347;RFX1:-0.330951651914;NFE2:-0.347410386366;ZEB1:-0.361352672183;FOX{D1,D2}:-0.361601488931;MYB:-0.363925242894;NFIX:-0.383560415209;FOXM1:-0.391126192877;POU3F1..4:-0.396516810224;RUNX1..3:-0.39875539308;EP300:-0.405750406491;ETS1,2:-0.412252073702;SP1:-0.417948506829;LMO2:-0.43628712618;NFKB1_REL_RELA:-0.437074516168;MED-1{core}:-0.440786561392;FOXP3:-0.44452483956;FOX{I1,J2}:-0.444554417207;SREBF1,2:-0.45975853541;GATA6:-0.472819017148;ONECUT1,2:-0.476606061037;ZBTB16:-0.50612099542;TGIF1:-0.512320546269;PAX8:-0.513898284472;JUN:-0.528517117751;AHR_ARNT_ARNT2:-0.595900326545;PAX2:-0.61916276751;EGR1..3:-0.620074963664;TLX2:-0.629946466099;TOPORS:-0.631972285619;SPI1:-0.633975416522;PAX4:-0.661265994572;HOXA9_MEIS1:-0.676920577706;ZNF143:-0.68133747521;RORA:-0.708636137362;ATF5_CREB3:-0.715919160894;IRF1,2:-0.717077960298;ATF2:-0.722550546488;GATA4:-0.727356775407;PAX3,7:-0.728008774927;PRDM1:-0.736567895596;STAT5{A,B}:-0.740152935139;PDX1:-0.746577106692;ELK1,4_GABP{A,B1}:-0.749412919225;ATF4:-0.75309727664;HBP1_HMGB_SSRP1_UBTF:-0.754605111833;MZF1:-0.757013634115;CDC5L:-0.762699752719;NR1H4:-0.765820298951;AIRE:-0.770565120888;OCT4_SOX2{dimer}:-0.789513083369;SOX2:-0.825336723746;STAT1,3:-0.833745326148;POU1F1:-0.849124995284;PITX1..3:-0.85014858809;SPIB:-0.897926189053;SOX{8,9,10}:-0.900877512418;YY1:-0.923415648793;PBX1:-0.971440046104;GFI1:-0.986384749733;IRF7:-0.996891298295;NKX6-1,2:-1.0065440859;IKZF2:-1.03478269289;ZNF384:-1.04023846553;NANOG:-1.08879046295;ZFP161:-1.09675005561;NKX2-3_NKX2-5:-1.11132561841;ELF1,2,4:-1.11365924986;NRF1:-1.12939003551;CUX2:-1.14245350678;DMAP1_NCOR{1,2}_SMARC:-1.17645105861;CREB1:-1.2219208446;NFY{A,B,C}:-1.33345592003;TFDP1:-1.36183327844;FOXN1:-1.37470885937;FOXP1:-1.41020136871;POU5F1:-1.43482801723;RFX2..5_RFXANK_RFXAP:-1.47508872908;BREu{core}:-1.56732507619;BPTF:-1.56874129238;E2F1..5:-1.57104557613;RBPJ:-1.5791517783;POU2F1..3:-1.5872925664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.77187202113;FOXQ1:-1.80602744598;ALX1:-1.88653217207;CDX1,2,4:-2.04117659764;FOXD3:-2.74661658669
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11469-119C2;search_select_hide=table117:FF:11469-119C2
 }}

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FF:11469-119C2: Difference between revisions

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Latest revision as of 18:03, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0