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{{f5samples
{{f5samples
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Line 35: Line 44:
|fonse_treatment_closure=
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Line 42: Line 65:
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Line 56: Line 82:
|rna_tube_id=119C2
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|rnaseq_library_id=SRhi10011.ACTTGA
|sample_age=66
|sample_age=66
|sample_category=primary cells
|sample_cell_catalog=F-PR-F
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|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.69533755558912e-266!GO:0005737;cytoplasm;2.71270036680276e-189!GO:0044444;cytoplasmic part;2.10135713967612e-157!GO:0043226;organelle;5.13552317294219e-114!GO:0043229;intracellular organelle;8.78590032867489e-114!GO:0043231;intracellular membrane-bound organelle;3.32016848562692e-112!GO:0043227;membrane-bound organelle;5.85678093954511e-112!GO:0044422;organelle part;1.08368432416403e-102!GO:0044446;intracellular organelle part;1.85655561974539e-101!GO:0005739;mitochondrion;8.41629146479654e-69!GO:0032991;macromolecular complex;3.45150020639505e-67!GO:0005515;protein binding;6.82564309293824e-65!GO:0030529;ribonucleoprotein complex;4.32892790136783e-64!GO:0031090;organelle membrane;8.64744203874588e-58!GO:0044237;cellular metabolic process;1.9420674873844e-50!GO:0044238;primary metabolic process;2.22103091948959e-49!GO:0043233;organelle lumen;1.82113640666982e-48!GO:0031974;membrane-enclosed lumen;1.82113640666982e-48!GO:0044429;mitochondrial part;1.37433882973757e-47!GO:0019538;protein metabolic process;7.41459630696926e-47!GO:0009058;biosynthetic process;1.04040367746023e-46!GO:0005840;ribosome;2.05500619084882e-44!GO:0044260;cellular macromolecule metabolic process;2.78102008911292e-43!GO:0044267;cellular protein metabolic process;9.63005133733628e-42!GO:0006412;translation;8.50820502564186e-41!GO:0003735;structural constituent of ribosome;2.2984780278245e-40!GO:0003723;RNA binding;1.48343786754175e-39!GO:0044249;cellular biosynthetic process;2.00421782037889e-39!GO:0043170;macromolecule metabolic process;3.35294342677526e-39!GO:0005829;cytosol;2.76500086192848e-38!GO:0031967;organelle envelope;4.00255034545835e-37!GO:0031975;envelope;5.29254274786332e-37!GO:0009059;macromolecule biosynthetic process;6.05674014522458e-37!GO:0033279;ribosomal subunit;4.6503987734656e-36!GO:0044428;nuclear part;6.97749790798386e-35!GO:0015031;protein transport;3.96873631492942e-33!GO:0005740;mitochondrial envelope;5.27047517488569e-33!GO:0043234;protein complex;9.44425901013794e-33!GO:0033036;macromolecule localization;1.09512091948227e-32!GO:0008104;protein localization;1.91825585660852e-31!GO:0016043;cellular component organization and biogenesis;2.27737523295508e-31!GO:0031966;mitochondrial membrane;2.73964144750082e-31!GO:0045184;establishment of protein localization;3.31021136059644e-31!GO:0005783;endoplasmic reticulum;1.05810049885019e-29!GO:0019866;organelle inner membrane;2.01986447084955e-28!GO:0005743;mitochondrial inner membrane;7.20951949554826e-28!GO:0006396;RNA processing;1.5765886921825e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49938722754944e-25!GO:0046907;intracellular transport;2.80046773289229e-25!GO:0044432;endoplasmic reticulum part;8.48648595751753e-24!GO:0006119;oxidative phosphorylation;1.1787156274143e-23!GO:0016071;mRNA metabolic process;3.72745201374381e-22!GO:0012505;endomembrane system;4.17300252094878e-22!GO:0044455;mitochondrial membrane part;1.5394039547858e-21!GO:0031981;nuclear lumen;1.62257632866069e-21!GO:0006886;intracellular protein transport;1.63156339845582e-21!GO:0006457;protein folding;7.91310268698904e-21!GO:0008380;RNA splicing;1.06641885831815e-19!GO:0044445;cytosolic part;2.52883943230881e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65048333431333e-19!GO:0015934;large ribosomal subunit;3.30182418885225e-19!GO:0006397;mRNA processing;3.38344702887253e-19!GO:0031980;mitochondrial lumen;1.88723178157797e-18!GO:0005759;mitochondrial matrix;1.88723178157797e-18!GO:0005794;Golgi apparatus;2.0947037005016e-18!GO:0005746;mitochondrial respiratory chain;2.75533586722893e-18!GO:0065003;macromolecular complex assembly;3.98362024689531e-18!GO:0048770;pigment granule;5.37629557753323e-18!GO:0042470;melanosome;5.37629557753323e-18!GO:0015935;small ribosomal subunit;8.86416685365262e-18!GO:0051186;cofactor metabolic process;2.45926136188685e-17!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.08534620964983e-17!GO:0022607;cellular component assembly;9.06797927161621e-17!GO:0005789;endoplasmic reticulum membrane;1.38318618942367e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.77789945321766e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.42989679999497e-16!GO:0003954;NADH dehydrogenase activity;7.42989679999497e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.42989679999497e-16!GO:0051641;cellular localization;7.69979725439604e-16!GO:0051649;establishment of cellular localization;1.26633938655496e-15!GO:0005634;nucleus;1.99876064385561e-15!GO:0051082;unfolded protein binding;6.08825766799543e-15!GO:0016491;oxidoreductase activity;9.20729797481276e-15!GO:0048193;Golgi vesicle transport;1.46059916046697e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.24332812688525e-14!GO:0006996;organelle organization and biogenesis;2.28767180832794e-14!GO:0009055;electron carrier activity;2.84508639007546e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.02015764838591e-14!GO:0045271;respiratory chain complex I;3.02015764838591e-14!GO:0005747;mitochondrial respiratory chain complex I;3.02015764838591e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31983585733278e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.37485393297442e-14!GO:0042773;ATP synthesis coupled electron transport;4.37485393297442e-14!GO:0005681;spliceosome;4.61081031499834e-14!GO:0006732;coenzyme metabolic process;1.05246947837925e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05789646545322e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42436685712487e-13!GO:0016462;pyrophosphatase activity;1.49829995768701e-13!GO:0016192;vesicle-mediated transport;1.77060141502017e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97666559596686e-13!GO:0005761;mitochondrial ribosome;2.52803599158862e-13!GO:0000313;organellar ribosome;2.52803599158862e-13!GO:0043228;non-membrane-bound organelle;4.0646594696058e-13!GO:0043232;intracellular non-membrane-bound organelle;4.0646594696058e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.36312548615373e-13!GO:0016874;ligase activity;8.13265553850368e-13!GO:0017111;nucleoside-triphosphatase activity;1.08451049535396e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.11802169285647e-12!GO:0044248;cellular catabolic process;1.20398963248719e-12!GO:0008134;transcription factor binding;1.49494676387786e-12!GO:0005654;nucleoplasm;1.967356181116e-12!GO:0006605;protein targeting;2.09958422691091e-12!GO:0022618;protein-RNA complex assembly;2.24657027526354e-12!GO:0006512;ubiquitin cycle;6.96362357713101e-12!GO:0043285;biopolymer catabolic process;8.81705554489483e-12!GO:0009057;macromolecule catabolic process;9.0273339963449e-12!GO:0044265;cellular macromolecule catabolic process;9.27483934999016e-12!GO:0012501;programmed cell death;2.91590088610157e-11!GO:0008135;translation factor activity, nucleic acid binding;5.42046515148344e-11!GO:0044451;nucleoplasm part;6.21246531026592e-11!GO:0006915;apoptosis;6.87130683210759e-11!GO:0005793;ER-Golgi intermediate compartment;7.7949387785718e-11!GO:0006091;generation of precursor metabolites and energy;7.91145395955362e-11!GO:0043283;biopolymer metabolic process;1.51646822496619e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.16175080110743e-10!GO:0008219;cell death;2.29924160187282e-10!GO:0016265;death;2.29924160187282e-10!GO:0048523;negative regulation of cellular process;2.86903766853097e-10!GO:0044257;cellular protein catabolic process;3.4972326700294e-10!GO:0030163;protein catabolic process;4.06556409547135e-10!GO:0019941;modification-dependent protein catabolic process;4.07672220007867e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.07672220007867e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.66310760733349e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.71289815655644e-10!GO:0000166;nucleotide binding;8.55066875309498e-10!GO:0043412;biopolymer modification;1.05526215917587e-09!GO:0005788;endoplasmic reticulum lumen;1.17171888042653e-09!GO:0010467;gene expression;1.30741837121192e-09!GO:0005768;endosome;1.49587837150224e-09!GO:0005773;vacuole;1.53669059413891e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.60862695781661e-09!GO:0005730;nucleolus;2.62570154390892e-09!GO:0009259;ribonucleotide metabolic process;2.78203419868464e-09!GO:0006163;purine nucleotide metabolic process;3.69715126327498e-09!GO:0009150;purine ribonucleotide metabolic process;4.05390113167936e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.41345798347377e-09!GO:0048519;negative regulation of biological process;4.89761981155663e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.16717138451886e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.16717138451886e-09!GO:0006464;protein modification process;6.31007431650918e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.51222808041056e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.51222808041056e-09!GO:0015986;ATP synthesis coupled proton transport;8.48409114251669e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.48409114251669e-09!GO:0009141;nucleoside triphosphate metabolic process;8.66014164416645e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.07565537218127e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.07565537218127e-09!GO:0006164;purine nucleotide biosynthetic process;1.28350773254492e-08!GO:0016049;cell growth;1.31296726952144e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.33100630532863e-08!GO:0051188;cofactor biosynthetic process;1.61028390892229e-08!GO:0008361;regulation of cell size;1.64560808988483e-08!GO:0009056;catabolic process;2.33884586031593e-08!GO:0009260;ribonucleotide biosynthetic process;2.36689769922457e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.69984111281444e-08!GO:0000375;RNA splicing, via transesterification reactions;2.69984111281444e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.69984111281444e-08!GO:0003712;transcription cofactor activity;3.05893241061578e-08!GO:0000323;lytic vacuole;3.05893241061578e-08!GO:0005764;lysosome;3.05893241061578e-08!GO:0003743;translation initiation factor activity;3.09995968572558e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.09995968572558e-08!GO:0043069;negative regulation of programmed cell death;3.79474631966173e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.13067331917551e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.33201225450757e-08!GO:0001558;regulation of cell growth;4.36646390839247e-08!GO:0006413;translational initiation;4.51863445192084e-08!GO:0019829;cation-transporting ATPase activity;5.13653092456079e-08!GO:0031988;membrane-bound vesicle;5.17525981990017e-08!GO:0044431;Golgi apparatus part;5.50235341600947e-08!GO:0009060;aerobic respiration;6.20042715785471e-08!GO:0043066;negative regulation of apoptosis;6.95429180553428e-08!GO:0006399;tRNA metabolic process;7.8743456701012e-08!GO:0046034;ATP metabolic process;8.269668259532e-08!GO:0006446;regulation of translational initiation;9.25156094846384e-08!GO:0006754;ATP biosynthetic process;9.37439626747217e-08!GO:0006753;nucleoside phosphate metabolic process;9.37439626747217e-08!GO:0008654;phospholipid biosynthetic process;1.56604211237878e-07!GO:0044262;cellular carbohydrate metabolic process;1.61026905451007e-07!GO:0008639;small protein conjugating enzyme activity;1.64222404903977e-07!GO:0042254;ribosome biogenesis and assembly;2.02984079064362e-07!GO:0045333;cellular respiration;2.47718407603505e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.82168014715377e-07!GO:0043067;regulation of programmed cell death;2.96240086302071e-07!GO:0017076;purine nucleotide binding;2.98172336858531e-07!GO:0006916;anti-apoptosis;3.20219460414176e-07!GO:0030120;vesicle coat;3.41719618824127e-07!GO:0030662;coated vesicle membrane;3.41719618824127e-07!GO:0004842;ubiquitin-protein ligase activity;3.73472092072968e-07!GO:0042981;regulation of apoptosis;4.12377596157136e-07!GO:0009117;nucleotide metabolic process;4.54962935308905e-07!GO:0008565;protein transporter activity;4.79201012487067e-07!GO:0006461;protein complex assembly;5.17026735398227e-07!GO:0019787;small conjugating protein ligase activity;5.33567387366391e-07!GO:0032553;ribonucleotide binding;7.08285219485249e-07!GO:0032555;purine ribonucleotide binding;7.08285219485249e-07!GO:0006913;nucleocytoplasmic transport;7.60774574564725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.71187627733704e-07!GO:0003714;transcription corepressor activity;1.0193838903209e-06!GO:0017038;protein import;1.04068706181835e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.07047762772677e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.07047762772677e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.07047762772677e-06!GO:0006752;group transfer coenzyme metabolic process;1.13820654765933e-06!GO:0042623;ATPase activity, coupled;1.13820654765933e-06!GO:0051169;nuclear transport;1.15181579456415e-06!GO:0007005;mitochondrion organization and biogenesis;1.16201642098249e-06!GO:0044440;endosomal part;1.20322410669672e-06!GO:0010008;endosome membrane;1.20322410669672e-06!GO:0009108;coenzyme biosynthetic process;1.20322410669672e-06!GO:0031410;cytoplasmic vesicle;1.2148772526934e-06!GO:0008610;lipid biosynthetic process;1.21654515861395e-06!GO:0031982;vesicle;1.32485003676614e-06!GO:0005635;nuclear envelope;1.38504598201898e-06!GO:0043687;post-translational protein modification;1.42999899551057e-06!GO:0040008;regulation of growth;1.45836565986065e-06!GO:0016887;ATPase activity;1.47091531440673e-06!GO:0043038;amino acid activation;1.73594431037296e-06!GO:0006418;tRNA aminoacylation for protein translation;1.73594431037296e-06!GO:0043039;tRNA aminoacylation;1.73594431037296e-06!GO:0051187;cofactor catabolic process;1.9075186745687e-06!GO:0016787;hydrolase activity;2.47860778508801e-06!GO:0048475;coated membrane;2.81049621785862e-06!GO:0030117;membrane coat;2.81049621785862e-06!GO:0006099;tricarboxylic acid cycle;3.07215619388504e-06!GO:0046356;acetyl-CoA catabolic process;3.07215619388504e-06!GO:0045454;cell redox homeostasis;3.14204044442985e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.48090388307587e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.51844487629418e-06!GO:0031965;nuclear membrane;3.53167743315816e-06!GO:0016881;acid-amino acid ligase activity;3.57961227153346e-06!GO:0045259;proton-transporting ATP synthase complex;3.69572537429577e-06!GO:0000139;Golgi membrane;5.16471360556732e-06!GO:0003924;GTPase activity;5.31829449248603e-06!GO:0009109;coenzyme catabolic process;5.59164212595692e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.59164212595692e-06!GO:0006084;acetyl-CoA metabolic process;5.83977190858656e-06!GO:0051789;response to protein stimulus;5.91156169041118e-06!GO:0006986;response to unfolded protein;5.91156169041118e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.63760369465737e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.88037587362764e-06!GO:0006082;organic acid metabolic process;9.63533453216272e-06!GO:0030133;transport vesicle;1.00295258581293e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.01439217908523e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.03508226611076e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.05395303016526e-05!GO:0006259;DNA metabolic process;1.20234961794529e-05!GO:0019752;carboxylic acid metabolic process;1.24718948941112e-05!GO:0016853;isomerase activity;1.29058989905744e-05!GO:0005762;mitochondrial large ribosomal subunit;1.30277234663569e-05!GO:0000315;organellar large ribosomal subunit;1.30277234663569e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.31301251281352e-05!GO:0015399;primary active transmembrane transporter activity;1.31301251281352e-05!GO:0046474;glycerophospholipid biosynthetic process;1.60668743135444e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.0458353338005e-05!GO:0006118;electron transport;2.46426491988833e-05!GO:0030554;adenyl nucleotide binding;2.4836030948868e-05!GO:0005798;Golgi-associated vesicle;2.55952028527509e-05!GO:0016604;nuclear body;2.71465179494145e-05!GO:0019867;outer membrane;2.77615271637486e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.02584138471073e-05!GO:0006979;response to oxidative stress;3.48967420325421e-05!GO:0016564;transcription repressor activity;3.48967420325421e-05!GO:0005791;rough endoplasmic reticulum;4.06385632237828e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.2388270705976e-05!GO:0032559;adenyl ribonucleotide binding;4.52163737573913e-05!GO:0031968;organelle outer membrane;4.52163737573913e-05!GO:0051246;regulation of protein metabolic process;5.66208920741302e-05!GO:0005524;ATP binding;5.96017064152781e-05!GO:0030029;actin filament-based process;6.78078691355101e-05!GO:0000151;ubiquitin ligase complex;8.14323375439123e-05!GO:0005770;late endosome;8.67686606377934e-05!GO:0044255;cellular lipid metabolic process;0.000105447955560829!GO:0006613;cotranslational protein targeting to membrane;0.000110806101941122!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000112098665092995!GO:0044453;nuclear membrane part;0.000112383800536836!GO:0030867;rough endoplasmic reticulum membrane;0.000114119255247141!GO:0031252;leading edge;0.000114119255247141!GO:0006364;rRNA processing;0.00011983957884231!GO:0043492;ATPase activity, coupled to movement of substances;0.000120040062399487!GO:0016859;cis-trans isomerase activity;0.000123643318350089!GO:0016567;protein ubiquitination;0.000130397825307731!GO:0045786;negative regulation of progression through cell cycle;0.000132191105917295!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000136806043161696!GO:0004298;threonine endopeptidase activity;0.000150283928261814!GO:0051726;regulation of cell cycle;0.000154833603828956!GO:0016607;nuclear speck;0.000166540551421852!GO:0005741;mitochondrial outer membrane;0.000167104487589479!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000172927269528104!GO:0006366;transcription from RNA polymerase II promoter;0.000173635795971869!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000175681073792357!GO:0016044;membrane organization and biogenesis;0.000177353674075456!GO:0000245;spliceosome assembly;0.000180203979050231!GO:0065002;intracellular protein transport across a membrane;0.000181229805013899!GO:0016072;rRNA metabolic process;0.000181630291141474!GO:0043623;cellular protein complex assembly;0.000186843248923327!GO:0032446;protein modification by small protein conjugation;0.000190095239014246!GO:0016740;transferase activity;0.000194798465095542!GO:0030176;integral to endoplasmic reticulum membrane;0.000202030382931239!GO:0000074;regulation of progression through cell cycle;0.000216750535347694!GO:0000314;organellar small ribosomal subunit;0.000216791558221264!GO:0005763;mitochondrial small ribosomal subunit;0.000216791558221264!GO:0005905;coated pit;0.000232392223811488!GO:0008026;ATP-dependent helicase activity;0.000233512158943911!GO:0009165;nucleotide biosynthetic process;0.000234964469766223!GO:0004576;oligosaccharyl transferase activity;0.000246079590247448!GO:0046467;membrane lipid biosynthetic process;0.000252919944184674!GO:0005769;early endosome;0.000276152003422788!GO:0008092;cytoskeletal protein binding;0.000292439931472312!GO:0005048;signal sequence binding;0.000364160189305851!GO:0051170;nuclear import;0.000373113252684841!GO:0006606;protein import into nucleus;0.000409482537774781!GO:0008250;oligosaccharyl transferase complex;0.00042392776974792!GO:0005667;transcription factor complex;0.00044771070321985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000465965349146502!GO:0016126;sterol biosynthetic process;0.00054378417130233!GO:0030663;COPI coated vesicle membrane;0.000543973822861918!GO:0030126;COPI vesicle coat;0.000543973822861918!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000557105669074094!GO:0019843;rRNA binding;0.000602112395898561!GO:0005975;carbohydrate metabolic process;0.000607181151149237!GO:0006839;mitochondrial transport;0.000607181151149237!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000613611140612638!GO:0031324;negative regulation of cellular metabolic process;0.000627349686602948!GO:0007049;cell cycle;0.000642454030383801!GO:0005525;GTP binding;0.000644304571953875!GO:0046489;phosphoinositide biosynthetic process;0.000683001767833249!GO:0007040;lysosome organization and biogenesis;0.000707884132228435!GO:0006793;phosphorus metabolic process;0.000733752369036742!GO:0006796;phosphate metabolic process;0.000733752369036742!GO:0006650;glycerophospholipid metabolic process;0.000763823678793913!GO:0022890;inorganic cation transmembrane transporter activity;0.000844411665070736!GO:0048468;cell development;0.000853282565231461!GO:0006818;hydrogen transport;0.000867682822621919!GO:0043284;biopolymer biosynthetic process;0.000872574262570203!GO:0016860;intramolecular oxidoreductase activity;0.000916313637369191!GO:0051920;peroxiredoxin activity;0.000916313637369191!GO:0015992;proton transport;0.00094874292033334!GO:0030137;COPI-coated vesicle;0.000950419927199795!GO:0006629;lipid metabolic process;0.00110643065937721!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00114579576399107!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0011999973072611!GO:0018196;peptidyl-asparagine modification;0.00121745232934336!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00121745232934336!GO:0007243;protein kinase cascade;0.00126695248309136!GO:0005885;Arp2/3 protein complex;0.00133894833995515!GO:0030308;negative regulation of cell growth;0.00134432171540896!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00144952281184306!GO:0007050;cell cycle arrest;0.00153611532806471!GO:0005520;insulin-like growth factor binding;0.00158928159553746!GO:0006612;protein targeting to membrane;0.00160193901959991!GO:0045792;negative regulation of cell size;0.00168015963468267!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00177718297743837!GO:0006974;response to DNA damage stimulus;0.00181411030807974!GO:0005774;vacuolar membrane;0.0018883555699005!GO:0043681;protein import into mitochondrion;0.00194518988558773!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00217957595133486!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00217957595133486!GO:0006643;membrane lipid metabolic process;0.00220012096963592!GO:0005643;nuclear pore;0.00225764541605782!GO:0016779;nucleotidyltransferase activity;0.00228424007289324!GO:0009892;negative regulation of metabolic process;0.00228424007289324!GO:0007033;vacuole organization and biogenesis;0.00230246434301804!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00238234930049624!GO:0015002;heme-copper terminal oxidase activity;0.00238234930049624!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00238234930049624!GO:0004129;cytochrome-c oxidase activity;0.00238234930049624!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00239845448208984!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00240019557626234!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00240019557626234!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00240019557626234!GO:0016310;phosphorylation;0.00240019557626234!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00242250094747188!GO:0050662;coenzyme binding;0.00254745739657746!GO:0046483;heterocycle metabolic process;0.00257991268040661!GO:0007006;mitochondrial membrane organization and biogenesis;0.00269093134024656!GO:0046930;pore complex;0.00290895791425288!GO:0031072;heat shock protein binding;0.00298062643478685!GO:0032561;guanyl ribonucleotide binding;0.00309847429968849!GO:0019001;guanyl nucleotide binding;0.00309847429968849!GO:0048522;positive regulation of cellular process;0.00312647207272313!GO:0003899;DNA-directed RNA polymerase activity;0.00314200265265034!GO:0004386;helicase activity;0.00326176606483827!GO:0048487;beta-tubulin binding;0.00333577663104844!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00337274112391715!GO:0006695;cholesterol biosynthetic process;0.00346485228091172!GO:0006383;transcription from RNA polymerase III promoter;0.00346485228091172!GO:0006790;sulfur metabolic process;0.00349946894884852!GO:0006693;prostaglandin metabolic process;0.00359278454344381!GO:0006692;prostanoid metabolic process;0.00359278454344381!GO:0045926;negative regulation of growth;0.00362486225356758!GO:0006414;translational elongation;0.00400161720272313!GO:0030659;cytoplasmic vesicle membrane;0.00420982272679281!GO:0009719;response to endogenous stimulus;0.00427848446408523!GO:0044437;vacuolar part;0.00435905618273939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00437333034040371!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00438131146060628!GO:0003697;single-stranded DNA binding;0.00441259796246183!GO:0006506;GPI anchor biosynthetic process;0.00456273567507261!GO:0022402;cell cycle process;0.0046761481041495!GO:0006626;protein targeting to mitochondrion;0.00477179510745889!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048281186540432!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048281186540432!GO:0006891;intra-Golgi vesicle-mediated transport;0.00484146324247013!GO:0016125;sterol metabolic process;0.00499064991575626!GO:0003724;RNA helicase activity;0.00507198798489257!GO:0003713;transcription coactivator activity;0.00507485033321268!GO:0006497;protein amino acid lipidation;0.00510255918259498!GO:0030132;clathrin coat of coated pit;0.00519243027267456!GO:0043021;ribonucleoprotein binding;0.00534770947043554!GO:0051287;NAD binding;0.0054836254681665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0056663816362601!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.005803335125218!GO:0065009;regulation of a molecular function;0.00590382706630753!GO:0006509;membrane protein ectodomain proteolysis;0.00599673174505048!GO:0033619;membrane protein proteolysis;0.00599673174505048!GO:0004177;aminopeptidase activity;0.00600397912625495!GO:0003779;actin binding;0.00601548890610877!GO:0006644;phospholipid metabolic process;0.00610193123909861!GO:0019318;hexose metabolic process;0.006323459464453!GO:0005765;lysosomal membrane;0.00634194585811153!GO:0006740;NADPH regeneration;0.0065825764273091!GO:0006098;pentose-phosphate shunt;0.0065825764273091!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00692743457930952!GO:0006066;alcohol metabolic process;0.00719906775807063!GO:0001516;prostaglandin biosynthetic process;0.00725820748934265!GO:0046457;prostanoid biosynthetic process;0.00725820748934265!GO:0000030;mannosyltransferase activity;0.00740346095462951!GO:0006505;GPI anchor metabolic process;0.00756886563291251!GO:0006897;endocytosis;0.0075733269530262!GO:0010324;membrane invagination;0.0075733269530262!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00796206647572415!GO:0017166;vinculin binding;0.00807578095640828!GO:0006778;porphyrin metabolic process;0.00809585639585321!GO:0033013;tetrapyrrole metabolic process;0.00809585639585321!GO:0030041;actin filament polymerization;0.00816000528459017!GO:0005996;monosaccharide metabolic process;0.0083297221839242!GO:0043433;negative regulation of transcription factor activity;0.00843467414334559!GO:0050811;GABA receptor binding;0.00861071641376534!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00881741434963798!GO:0048471;perinuclear region of cytoplasm;0.00896640061610877!GO:0051427;hormone receptor binding;0.00921428888449846!GO:0030658;transport vesicle membrane;0.0093097845931092!GO:0005869;dynactin complex;0.00939766872595148!GO:0019899;enzyme binding;0.00948215411587962!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00952812781119403!GO:0008033;tRNA processing;0.00954771164760016!GO:0031902;late endosome membrane;0.00970778627088546!GO:0030134;ER to Golgi transport vesicle;0.0102104006950461!GO:0046519;sphingoid metabolic process;0.0105388490721236!GO:0006807;nitrogen compound metabolic process;0.0107377646575387!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0112020865629478!GO:0001726;ruffle;0.0112020865629478!GO:0030880;RNA polymerase complex;0.0113070977503684!GO:0016563;transcription activator activity;0.0115748368291533!GO:0043488;regulation of mRNA stability;0.0124264809343611!GO:0043487;regulation of RNA stability;0.0124264809343611!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0125341846213859!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0126462091131186!GO:0051540;metal cluster binding;0.0127080263406442!GO:0051536;iron-sulfur cluster binding;0.0127080263406442!GO:0042168;heme metabolic process;0.0127965773096647!GO:0051252;regulation of RNA metabolic process;0.0128581235116397!GO:0030384;phosphoinositide metabolic process;0.0129423662202057!GO:0008632;apoptotic program;0.0135807190906196!GO:0042158;lipoprotein biosynthetic process;0.0136229170430144!GO:0043566;structure-specific DNA binding;0.0137867793657494!GO:0044433;cytoplasmic vesicle part;0.0137892221669715!GO:0048500;signal recognition particle;0.0138541090116464!GO:0006281;DNA repair;0.0142679674474475!GO:0016481;negative regulation of transcription;0.0144825830700196!GO:0048037;cofactor binding;0.0145585892502914!GO:0008154;actin polymerization and/or depolymerization;0.014665794242807!GO:0003746;translation elongation factor activity;0.014665794242807!GO:0035257;nuclear hormone receptor binding;0.014665794242807!GO:0046394;carboxylic acid biosynthetic process;0.014665794242807!GO:0016053;organic acid biosynthetic process;0.014665794242807!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0149049151355199!GO:0001527;microfibril;0.0149202239367996!GO:0016272;prefoldin complex;0.0151039268485906!GO:0031418;L-ascorbic acid binding;0.0152930471021295!GO:0048518;positive regulation of biological process;0.0162769028739176!GO:0030145;manganese ion binding;0.0164068580114578!GO:0006633;fatty acid biosynthetic process;0.0164107022006472!GO:0006595;polyamine metabolic process;0.01672604084773!GO:0035258;steroid hormone receptor binding;0.01672604084773!GO:0000902;cell morphogenesis;0.0167716562034304!GO:0032989;cellular structure morphogenesis;0.0167716562034304!GO:0045045;secretory pathway;0.0167716562034304!GO:0016197;endosome transport;0.0169092201331703!GO:0051329;interphase of mitotic cell cycle;0.0170271883037171!GO:0005583;fibrillar collagen;0.0175225486590073!GO:0051325;interphase;0.0176566363448925!GO:0044420;extracellular matrix part;0.0178008811255285!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0178431903293745!GO:0008139;nuclear localization sequence binding;0.0178655980188106!GO:0006950;response to stress;0.0178780255884534!GO:0030118;clathrin coat;0.0179435046078343!GO:0033559;unsaturated fatty acid metabolic process;0.0180975361737986!GO:0006636;unsaturated fatty acid biosynthetic process;0.0180975361737986!GO:0030127;COPII vesicle coat;0.0186316231356204!GO:0012507;ER to Golgi transport vesicle membrane;0.0186316231356204!GO:0032787;monocarboxylic acid metabolic process;0.0189478772831244!GO:0006007;glucose catabolic process;0.0196453488318845!GO:0003756;protein disulfide isomerase activity;0.0196770311670925!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0196770311670925!GO:0001666;response to hypoxia;0.019876493203503!GO:0030660;Golgi-associated vesicle membrane;0.0199561000373697!GO:0031901;early endosome membrane;0.0201105208174089!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0201105208174089!GO:0006631;fatty acid metabolic process;0.0203161741564164!GO:0006749;glutathione metabolic process;0.0204925108515302!GO:0006672;ceramide metabolic process;0.0211564793013631!GO:0006892;post-Golgi vesicle-mediated transport;0.02195858312791!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0222018743913743!GO:0000428;DNA-directed RNA polymerase complex;0.0222018743913743!GO:0006767;water-soluble vitamin metabolic process;0.0224030248798172!GO:0006354;RNA elongation;0.0224030248798172!GO:0031301;integral to organelle membrane;0.0225947801444857!GO:0030027;lamellipodium;0.0228610054028961!GO:0005581;collagen;0.0228610054028961!GO:0007010;cytoskeleton organization and biogenesis;0.0234276152269432!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0235304038427386!GO:0008186;RNA-dependent ATPase activity;0.0237712843751327!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.023862397782924!GO:0007030;Golgi organization and biogenesis;0.0239292633828395!GO:0006779;porphyrin biosynthetic process;0.0240593750149938!GO:0033014;tetrapyrrole biosynthetic process;0.0240593750149938!GO:0005862;muscle thin filament tropomyosin;0.024125757659119!GO:0009967;positive regulation of signal transduction;0.0249600453698689!GO:0005684;U2-dependent spliceosome;0.0253039746671434!GO:0009308;amine metabolic process;0.0254078027124651!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0257440619599104!GO:0045047;protein targeting to ER;0.0257440619599104!GO:0008180;signalosome;0.0259215453633521!GO:0006739;NADP metabolic process;0.0262364666994619!GO:0000049;tRNA binding;0.0266092285966337!GO:0008652;amino acid biosynthetic process;0.0266092285966337!GO:0008147;structural constituent of bone;0.0274811195376375!GO:0031529;ruffle organization and biogenesis;0.0275033046369282!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0275462408192361!GO:0006518;peptide metabolic process;0.0283026698846402!GO:0000287;magnesium ion binding;0.0285670203418107!GO:0007264;small GTPase mediated signal transduction;0.0286599494975969!GO:0008484;sulfuric ester hydrolase activity;0.0293561140029262!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0293764812894855!GO:0035035;histone acetyltransferase binding;0.0297960053653064!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0303248992816836!GO:0006635;fatty acid beta-oxidation;0.0321003617198575!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0321211902465521!GO:0004784;superoxide dismutase activity;0.0321211902465521!GO:0008312;7S RNA binding;0.0326743949404719!GO:0042802;identical protein binding;0.0327047946658551!GO:0005832;chaperonin-containing T-complex;0.033836010740899!GO:0012506;vesicle membrane;0.0340916116525607!GO:0007034;vacuolar transport;0.0349273551701868!GO:0051087;chaperone binding;0.0349273551701868!GO:0006914;autophagy;0.0358630927206412!GO:0051101;regulation of DNA binding;0.0361981795081083!GO:0005777;peroxisome;0.0361981795081083!GO:0042579;microbody;0.0361981795081083!GO:0048144;fibroblast proliferation;0.0372568071947932!GO:0048145;regulation of fibroblast proliferation;0.0372568071947932!GO:0006783;heme biosynthetic process;0.0380930933183678!GO:0016408;C-acyltransferase activity;0.0384029501133574!GO:0050178;phenylpyruvate tautomerase activity;0.0384029501133574!GO:0008203;cholesterol metabolic process;0.0386168546915334!GO:0051235;maintenance of localization;0.0386347741733809!GO:0051128;regulation of cellular component organization and biogenesis;0.0392056677098544!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0394569697641087!GO:0003729;mRNA binding;0.0398088672418702!GO:0031543;peptidyl-proline dioxygenase activity;0.0403831816048189!GO:0065004;protein-DNA complex assembly;0.0404093894613944!GO:0051168;nuclear export;0.0404404127269253!GO:0030125;clathrin vesicle coat;0.0406037818022725!GO:0030665;clathrin coated vesicle membrane;0.0406037818022725!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0407283284645547!GO:0010257;NADH dehydrogenase complex assembly;0.0407283284645547!GO:0033108;mitochondrial respiratory chain complex assembly;0.0407283284645547!GO:0051098;regulation of binding;0.0417229154720237!GO:0006289;nucleotide-excision repair;0.0420862720748231!GO:0006323;DNA packaging;0.042588406944455!GO:0006733;oxidoreduction coenzyme metabolic process;0.0428264862000878!GO:0006403;RNA localization;0.0452378462026631!GO:0050657;nucleic acid transport;0.045516880999803!GO:0051236;establishment of RNA localization;0.045516880999803!GO:0050658;RNA transport;0.045516880999803!GO:0006022;aminoglycan metabolic process;0.0461309563534702!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0464537444544085!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0464537444544085!GO:0006769;nicotinamide metabolic process;0.0465191595999112!GO:0030503;regulation of cell redox homeostasis;0.0465595261444993!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0466167973107247!GO:0030032;lamellipodium biogenesis;0.0470546536419938!GO:0007041;lysosomal transport;0.0471054235899884!GO:0006520;amino acid metabolic process;0.0471054235899884!GO:0003923;GPI-anchor transamidase activity;0.0471054235899884!GO:0016255;attachment of GPI anchor to protein;0.0471054235899884!GO:0042765;GPI-anchor transamidase complex;0.0471054235899884!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0474715901616173!GO:0005901;caveola;0.0480641991166487!GO:0004004;ATP-dependent RNA helicase activity;0.0490313148546811!GO:0022408;negative regulation of cell-cell adhesion;0.0492889495284612!GO:0031589;cell-substrate adhesion;0.0494944599924497!GO:0051539;4 iron, 4 sulfur cluster binding;0.0495026444829519!GO:0004364;glutathione transferase activity;0.0496351441166693
|sample_id=11469
|sample_id=11469
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=kidney
|sample_tissue=kidney
|top_motifs=RXRA_VDR{dimer}:2.41927022559;GLI1..3:2.37941937281;HES1:2.17622079625;HIF1A:2.1309601428;ZNF423:2.11298124188;IKZF1:2.09602520196;FOXL1:2.03776090159;ESR1:2.02700534285;ATF6:2.01968948465;GZF1:1.95093549042;SMAD1..7,9:1.90900390379;TP53:1.80130811634;TAL1_TCF{3,4,12}:1.77107875055;TFAP4:1.73529229069;EBF1:1.71666614113;MAFB:1.67814050078;HMX1:1.54205230305;SRF:1.43890509148;PAX1,9:1.35850122512;HOX{A5,B5}:1.35844191246;ZNF238:1.31990781739;UFEwm:1.2829232598;ALX4:1.27158945075;TEAD1:1.23011055078;RXR{A,B,G}:1.17748952214;ZNF148:1.17587322847;ESRRA:1.15403113811;HAND1,2:1.15399613265;NKX2-2,8:1.12097793659;XBP1:1.10526907851;bHLH_family:1.02206161207;TLX1..3_NFIC{dimer}:1.00753030039;NKX3-1:0.993143486995;HOX{A6,A7,B6,B7}:0.885118842702;GTF2A1,2:0.8763712977;NR6A1:0.874358606381;TFCP2:0.803830708095;TBX4,5:0.776843561158;NKX3-2:0.745020386669;TBP:0.735921637883;HIC1:0.70753674527;TFAP2B:0.699905038864;T:0.683329440888;NHLH1,2:0.672837388169;KLF4:0.661573245003;SPZ1:0.624769540842;VSX1,2:0.619664866115;GCM1,2:0.600334396591;NKX2-1,4:0.573237125414;MYBL2:0.548192573091;GFI1B:0.529837497435;MTF1:0.521197213521;EVI1:0.450557969962;NFE2L1:0.444580404928;AR:0.436263149287;EN1,2:0.431999545235;HLF:0.414251431968;GTF2I:0.40303643561;MAZ:0.366174450766;LHX3,4:0.306859728264;NR5A1,2:0.280280626952;TFAP2{A,C}:0.271949662386;MEF2{A,B,C,D}:0.264213341623;PAX6:0.25489710512;SOX17:0.237279084116;XCPE1{core}:0.21665388363;CEBPA,B_DDIT3:0.200408759761;POU6F1:0.188423468651;HNF1A:0.174559372234;PPARG:0.17174938261;RREB1:0.170513543927;FOXA2:0.163196655937;NR3C1:0.162751416491;NFATC1..3:0.127400687365;REST:0.117195776841;NFIL3:0.11343645758;DBP:0.107743474699;MTE{core}:0.0954377221447;NFE2L2:0.0852220196875;ZIC1..3:0.0742931917532;ARID5B:0.0737869305108;FOXO1,3,4:0.0651991941152;HMGA1,2:0.032797485846;CRX:0.0260442388956;SOX5:0.015446456891;NANOG{mouse}:0.00798197696961;PATZ1:-0.00479977396433;LEF1_TCF7_TCF7L1,2:-0.0050085104077;HNF4A_NR2F1,2:-0.0141179559266;STAT2,4,6:-0.0329631392012;PAX5:-0.0727351913979;BACH2:-0.0846040566532;FOSL2:-0.0847015231988;TEF:-0.0978781299207;HOX{A4,D4}:-0.118570498674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.146094484703;FOS_FOS{B,L1}_JUN{B,D}:-0.156106736067;ZBTB6:-0.188280451105;FOX{F1,F2,J1}:-0.193911737048;SNAI1..3:-0.211230499013;MYOD1:-0.240167580771;PRRX1,2:-0.285875671625;ADNP_IRX_SIX_ZHX:-0.290512568819;MYFfamily:-0.311583666537;HSF1,2:-0.322646936347;RFX1:-0.330951651914;NFE2:-0.347410386366;ZEB1:-0.361352672183;FOX{D1,D2}:-0.361601488931;MYB:-0.363925242894;NFIX:-0.383560415209;FOXM1:-0.391126192877;POU3F1..4:-0.396516810224;RUNX1..3:-0.39875539308;EP300:-0.405750406491;ETS1,2:-0.412252073702;SP1:-0.417948506829;LMO2:-0.43628712618;NFKB1_REL_RELA:-0.437074516168;MED-1{core}:-0.440786561392;FOXP3:-0.44452483956;FOX{I1,J2}:-0.444554417207;SREBF1,2:-0.45975853541;GATA6:-0.472819017148;ONECUT1,2:-0.476606061037;ZBTB16:-0.50612099542;TGIF1:-0.512320546269;PAX8:-0.513898284472;JUN:-0.528517117751;AHR_ARNT_ARNT2:-0.595900326545;PAX2:-0.61916276751;EGR1..3:-0.620074963664;TLX2:-0.629946466099;TOPORS:-0.631972285619;SPI1:-0.633975416522;PAX4:-0.661265994572;HOXA9_MEIS1:-0.676920577706;ZNF143:-0.68133747521;RORA:-0.708636137362;ATF5_CREB3:-0.715919160894;IRF1,2:-0.717077960298;ATF2:-0.722550546488;GATA4:-0.727356775407;PAX3,7:-0.728008774927;PRDM1:-0.736567895596;STAT5{A,B}:-0.740152935139;PDX1:-0.746577106692;ELK1,4_GABP{A,B1}:-0.749412919225;ATF4:-0.75309727664;HBP1_HMGB_SSRP1_UBTF:-0.754605111833;MZF1:-0.757013634115;CDC5L:-0.762699752719;NR1H4:-0.765820298951;AIRE:-0.770565120888;OCT4_SOX2{dimer}:-0.789513083369;SOX2:-0.825336723746;STAT1,3:-0.833745326148;POU1F1:-0.849124995284;PITX1..3:-0.85014858809;SPIB:-0.897926189053;SOX{8,9,10}:-0.900877512418;YY1:-0.923415648793;PBX1:-0.971440046104;GFI1:-0.986384749733;IRF7:-0.996891298295;NKX6-1,2:-1.0065440859;IKZF2:-1.03478269289;ZNF384:-1.04023846553;NANOG:-1.08879046295;ZFP161:-1.09675005561;NKX2-3_NKX2-5:-1.11132561841;ELF1,2,4:-1.11365924986;NRF1:-1.12939003551;CUX2:-1.14245350678;DMAP1_NCOR{1,2}_SMARC:-1.17645105861;CREB1:-1.2219208446;NFY{A,B,C}:-1.33345592003;TFDP1:-1.36183327844;FOXN1:-1.37470885937;FOXP1:-1.41020136871;POU5F1:-1.43482801723;RFX2..5_RFXANK_RFXAP:-1.47508872908;BREu{core}:-1.56732507619;BPTF:-1.56874129238;E2F1..5:-1.57104557613;RBPJ:-1.5791517783;POU2F1..3:-1.5872925664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.77187202113;FOXQ1:-1.80602744598;ALX1:-1.88653217207;CDX1,2,4:-2.04117659764;FOXD3:-2.74661658669
|top_motifs=RXRA_VDR{dimer}:2.41927022559;GLI1..3:2.37941937281;HES1:2.17622079625;HIF1A:2.1309601428;ZNF423:2.11298124188;IKZF1:2.09602520196;FOXL1:2.03776090159;ESR1:2.02700534285;ATF6:2.01968948465;GZF1:1.95093549042;SMAD1..7,9:1.90900390379;TP53:1.80130811634;TAL1_TCF{3,4,12}:1.77107875055;TFAP4:1.73529229069;EBF1:1.71666614113;MAFB:1.67814050078;HMX1:1.54205230305;SRF:1.43890509148;PAX1,9:1.35850122512;HOX{A5,B5}:1.35844191246;ZNF238:1.31990781739;UFEwm:1.2829232598;ALX4:1.27158945075;TEAD1:1.23011055078;RXR{A,B,G}:1.17748952214;ZNF148:1.17587322847;ESRRA:1.15403113811;HAND1,2:1.15399613265;NKX2-2,8:1.12097793659;XBP1:1.10526907851;bHLH_family:1.02206161207;TLX1..3_NFIC{dimer}:1.00753030039;NKX3-1:0.993143486995;HOX{A6,A7,B6,B7}:0.885118842702;GTF2A1,2:0.8763712977;NR6A1:0.874358606381;TFCP2:0.803830708095;TBX4,5:0.776843561158;NKX3-2:0.745020386669;TBP:0.735921637883;HIC1:0.70753674527;TFAP2B:0.699905038864;T:0.683329440888;NHLH1,2:0.672837388169;KLF4:0.661573245003;SPZ1:0.624769540842;VSX1,2:0.619664866115;GCM1,2:0.600334396591;NKX2-1,4:0.573237125414;MYBL2:0.548192573091;GFI1B:0.529837497435;MTF1:0.521197213521;EVI1:0.450557969962;NFE2L1:0.444580404928;AR:0.436263149287;EN1,2:0.431999545235;HLF:0.414251431968;GTF2I:0.40303643561;MAZ:0.366174450766;LHX3,4:0.306859728264;NR5A1,2:0.280280626952;TFAP2{A,C}:0.271949662386;MEF2{A,B,C,D}:0.264213341623;PAX6:0.25489710512;SOX17:0.237279084116;XCPE1{core}:0.21665388363;CEBPA,B_DDIT3:0.200408759761;POU6F1:0.188423468651;HNF1A:0.174559372234;PPARG:0.17174938261;RREB1:0.170513543927;FOXA2:0.163196655937;NR3C1:0.162751416491;NFATC1..3:0.127400687365;REST:0.117195776841;NFIL3:0.11343645758;DBP:0.107743474699;MTE{core}:0.0954377221447;NFE2L2:0.0852220196875;ZIC1..3:0.0742931917532;ARID5B:0.0737869305108;FOXO1,3,4:0.0651991941152;HMGA1,2:0.032797485846;CRX:0.0260442388956;SOX5:0.015446456891;NANOG{mouse}:0.00798197696961;PATZ1:-0.00479977396433;LEF1_TCF7_TCF7L1,2:-0.0050085104077;HNF4A_NR2F1,2:-0.0141179559266;STAT2,4,6:-0.0329631392012;PAX5:-0.0727351913979;BACH2:-0.0846040566532;FOSL2:-0.0847015231988;TEF:-0.0978781299207;HOX{A4,D4}:-0.118570498674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.146094484703;FOS_FOS{B,L1}_JUN{B,D}:-0.156106736067;ZBTB6:-0.188280451105;FOX{F1,F2,J1}:-0.193911737048;SNAI1..3:-0.211230499013;MYOD1:-0.240167580771;PRRX1,2:-0.285875671625;ADNP_IRX_SIX_ZHX:-0.290512568819;MYFfamily:-0.311583666537;HSF1,2:-0.322646936347;RFX1:-0.330951651914;NFE2:-0.347410386366;ZEB1:-0.361352672183;FOX{D1,D2}:-0.361601488931;MYB:-0.363925242894;NFIX:-0.383560415209;FOXM1:-0.391126192877;POU3F1..4:-0.396516810224;RUNX1..3:-0.39875539308;EP300:-0.405750406491;ETS1,2:-0.412252073702;SP1:-0.417948506829;LMO2:-0.43628712618;NFKB1_REL_RELA:-0.437074516168;MED-1{core}:-0.440786561392;FOXP3:-0.44452483956;FOX{I1,J2}:-0.444554417207;SREBF1,2:-0.45975853541;GATA6:-0.472819017148;ONECUT1,2:-0.476606061037;ZBTB16:-0.50612099542;TGIF1:-0.512320546269;PAX8:-0.513898284472;JUN:-0.528517117751;AHR_ARNT_ARNT2:-0.595900326545;PAX2:-0.61916276751;EGR1..3:-0.620074963664;TLX2:-0.629946466099;TOPORS:-0.631972285619;SPI1:-0.633975416522;PAX4:-0.661265994572;HOXA9_MEIS1:-0.676920577706;ZNF143:-0.68133747521;RORA:-0.708636137362;ATF5_CREB3:-0.715919160894;IRF1,2:-0.717077960298;ATF2:-0.722550546488;GATA4:-0.727356775407;PAX3,7:-0.728008774927;PRDM1:-0.736567895596;STAT5{A,B}:-0.740152935139;PDX1:-0.746577106692;ELK1,4_GABP{A,B1}:-0.749412919225;ATF4:-0.75309727664;HBP1_HMGB_SSRP1_UBTF:-0.754605111833;MZF1:-0.757013634115;CDC5L:-0.762699752719;NR1H4:-0.765820298951;AIRE:-0.770565120888;OCT4_SOX2{dimer}:-0.789513083369;SOX2:-0.825336723746;STAT1,3:-0.833745326148;POU1F1:-0.849124995284;PITX1..3:-0.85014858809;SPIB:-0.897926189053;SOX{8,9,10}:-0.900877512418;YY1:-0.923415648793;PBX1:-0.971440046104;GFI1:-0.986384749733;IRF7:-0.996891298295;NKX6-1,2:-1.0065440859;IKZF2:-1.03478269289;ZNF384:-1.04023846553;NANOG:-1.08879046295;ZFP161:-1.09675005561;NKX2-3_NKX2-5:-1.11132561841;ELF1,2,4:-1.11365924986;NRF1:-1.12939003551;CUX2:-1.14245350678;DMAP1_NCOR{1,2}_SMARC:-1.17645105861;CREB1:-1.2219208446;NFY{A,B,C}:-1.33345592003;TFDP1:-1.36183327844;FOXN1:-1.37470885937;FOXP1:-1.41020136871;POU5F1:-1.43482801723;RFX2..5_RFXANK_RFXAP:-1.47508872908;BREu{core}:-1.56732507619;BPTF:-1.56874129238;E2F1..5:-1.57104557613;RBPJ:-1.5791517783;POU2F1..3:-1.5872925664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.77187202113;FOXQ1:-1.80602744598;ALX1:-1.88653217207;CDX1,2,4:-2.04117659764;FOXD3:-2.74661658669
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11469-119C2;search_select_hide=table117:FF:11469-119C2
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Preadipocyte - perirenal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12065
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stage66 years old adult
sexfemale
age66
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.1

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005735
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12065 CAGE DRX008412 DRR009284
Accession ID Hg19

Library idBAMCTSS
CNhs12065 DRZ000709 DRZ002094
Accession ID Hg38

Library idBAMCTSS
CNhs12065 DRZ012059 DRZ013444
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005735
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.ACTTGA sRNA-Seq DRX037170 DRR041536
Accession ID Hg19

Library idBAMCTSS
SRhi10011.ACTTGA DRZ007178


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0809
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.841
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.308
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.395
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.737
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.737
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.511
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00126
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.395
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0194
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.575
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.395
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.395
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.841
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.395
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.925
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.925
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12065

Jaspar motifP-value
MA0002.20.45
MA0003.10.126
MA0004.10.872
MA0006.10.306
MA0007.10.0653
MA0009.10.679
MA0014.10.602
MA0017.10.271
MA0018.24.43325e-4
MA0019.10.911
MA0024.14.54829e-6
MA0025.10.00793
MA0027.10.899
MA0028.10.0194
MA0029.10.209
MA0030.10.652
MA0031.10.455
MA0035.20.947
MA0038.10.0122
MA0039.20.6
MA0040.10.353
MA0041.10.325
MA0042.10.819
MA0043.10.00318
MA0046.10.39
MA0047.20.668
MA0048.10.86
MA0050.12.70593e-6
MA0051.10.041
MA0052.10.793
MA0055.10.862
MA0057.10.0872
MA0058.10.979
MA0059.10.433
MA0060.14.25896e-6
MA0061.10.948
MA0062.23.30069e-5
MA0065.20.15
MA0066.10.0853
MA0067.10.0264
MA0068.10.121
MA0069.10.206
MA0070.10.841
MA0071.10.263
MA0072.10.961
MA0073.10.864
MA0074.10.465
MA0076.10.00386
MA0077.10.373
MA0078.10.151
MA0079.20.433
MA0080.21.4222e-5
MA0081.10.0219
MA0083.13.54579e-4
MA0084.10.97
MA0087.10.452
MA0088.10.639
MA0090.11.23107e-4
MA0091.10.0388
MA0092.10.0187
MA0093.10.978
MA0099.20.792
MA0100.10.382
MA0101.10.0795
MA0102.20.158
MA0103.10.986
MA0104.20.531
MA0105.10.679
MA0106.10.104
MA0107.10.159
MA0108.27.04029e-4
MA0111.10.792
MA0112.22.92432e-4
MA0113.10.0153
MA0114.10.285
MA0115.10.243
MA0116.10.113
MA0117.10.635
MA0119.10.0942
MA0122.10.725
MA0124.10.0141
MA0125.10.273
MA0131.10.125
MA0135.10.981
MA0136.11.74148e-8
MA0137.20.0739
MA0138.20.0694
MA0139.10.707
MA0140.10.865
MA0141.10.125
MA0142.10.121
MA0143.10.836
MA0144.10.686
MA0145.10.182
MA0146.10.16
MA0147.10.79
MA0148.10.415
MA0149.10.285
MA0150.10.782
MA0152.10.0548
MA0153.10.0268
MA0154.10.0857
MA0155.10.0784
MA0156.13.89134e-5
MA0157.10.601
MA0159.10.0331
MA0160.10.55
MA0162.10.0681
MA0163.10.00859
MA0164.10.722
MA0258.10.00504
MA0259.10.707



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12065

Novel motifP-value
10.312
100.905
1000.59
1010.886
1020.579
1030.261
1040.32
1050.907
1060.0287
1070.0208
1080.229
1090.123
110.176
1100.312
1110.699
1120.353
1130.939
1140.0866
1150.105
1160.156
1170.859
1180.585
1190.395
120.662
1200.721
1210.74
1220.975
1230.268
1240.891
1250.939
1260.894
1270.702
1280.0671
1290.553
130.94
1300.607
1310.924
1320.853
1330.474
1340.44
1350.212
1360.88
1370.878
1380.858
1390.0124
140.978
1400.842
1410.782
1420.567
1430.083
1440.704
1450.821
1460.157
1470.209
1480.534
1490.00229
150.359
1500.539
1510.323
1520.0305
1530.59
1540.487
1550.624
1560.511
1570.95
1580.438
1590.953
160.0384
1600.112
1610.707
1620.875
1630.96
1640.343
1650.685
1660.497
1670.361
1680.165
1690.0148
170.113
180.0938
190.0626
20.203
200.506
210.981
220.0725
230.0494
240.72
250.725
260.203
270.0961
280.376
290.63
30.316
300.456
310.373
321.27741e-10
330.605
340.428
350.537
360.487
370.118
380.58
390.188
40.188
400.28
410.489
420.895
430.0894
440.134
450.407
460.206
470.49
480.37
490.23
50.26
500.557
510.497
520.258
530.899
540.317
550.338
560.682
570.302
580.819
590.0487
60.888
600.173
610.91
620.923
630.129
640.419
650.187
660.587
670.408
680.0767
690.129
70.715
700.057
710.381
720.955
730.0306
740.351
750.39
760.608
770.0144
780.913
790.00625
80.0779
800.88
810.565
820.0932
830.834
840.134
850.0151
860.588
870.399
880.231
890.00951
90.291
900.688
910.707
920.0382
930.825
940.33
950.179
960.823
970.189
980.346
990.0759



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12065


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002581 (perirenal preadipocyte)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0005406 (perirenal fat)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000141 (human perirenal preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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