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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001043,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0002036,UBERON:0002385,UBERON:0005177,UBERON:0000486,UBERON:0003104,UBERON:0000464,UBERON:0000914,UBERON:0005256,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0001015,UBERON:0002532,UBERON:0001555,UBERON:0002329,UBERON:0002204,UBERON:0007026,UBERON:0001041,UBERON:0000383,UBERON:0002224,UBERON:0000915,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0006595,UBERON:0006603,UBERON:0009143,UBERON:0003082,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
|DRA_sample_Accession=CAGE@SAMD00004907
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000222,CL:0002599,CL:0000355,CL:0000514
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004907
|accession_numbers=CAGE;DRX008489;DRR009361;DRZ000786;DRZ002171;DRZ012136;DRZ013521
|accession_numbers_RNASeq=sRNA-Seq;DRX037116;DRR041482;DRZ007124
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002599
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000182
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.85!704.63!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.07!142.39!FOXF1;;chr5:134369905..134369972,-!p1@PITX1!1.89!115.08!PITX1;;chr4:174451370..174451387,-!p1@HAND2!1.68!47.30!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.68!46.81!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!202.86!CREB3L1;;chr19:46801639..46801699,+!p1@HIF3A!1.57!36.08!HIF3A;;chr6:1389789..1389821,+!p1@FOXF2!1.55!46.81!FOXF2;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.37!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!1.35!27.80!BCL3;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.21!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.07!HAND2;;chr5:92918919..92918942,+!p1@NR2F1!1.21!66.81!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.81!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.86!TWIST2;;chr14:29235961..29236008,+!p1@FOXG1!1.15!13.17!FOXG1;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.97!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!1.06!23.41!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.43!C11orf9;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.51!GLI2;;chr15:76629123..76629151,+!p1@ISL2!0.99!9.75!ISL2;;chr8:48650715..48650735,-!p1@CEBPD!0.95!1039.64!CEBPD;;chr20:50721803..50721857,-!p2@ZFP64!0.95!12.68!ZFP64;;chr17:46622114..46622138,-!p4@HOXB2!0.95!12.19!HOXB2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.73!TBX2;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.71!HIC1;;chr14:29236269..29236285,+!p3@FOXG1!0.92!7.31!FOXG1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.37!MYBL2;;chr9:132427972..132428056,+!p1@PRRX2!0.90!9.27!PRRX2;;chr1:203055129..203055147,-!p1@MYOG!0.89!6.83!MYOG;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.83!FOXF2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.19!ZFP106;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.29!SMAD3;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.31!NR1H3;;chr4:111558135..111558198,-!p2@PITX2!0.87!6.34!PITX2;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.34!HIF3A;;chr16:8962853..8962878,-!p1@CARHSP1!0.86!387.67!CARHSP1;;chr2:19558373..19558392,-!p1@OSR1!0.86!18.04!OSR1;;chr17:59477197..59477212,+!p2@TBX2!0.86!11.22!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.85!6.83!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!0.84!10.73!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.85!CREB3L1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.14!TOX2;;chr7:42276787..42276815,-!p1@GLI3!0.81!15.60!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.63!TWIST1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.80!15.60!ZC3H7B;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.68!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.80!7.80!ZBTB16;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.36!KDM5D;;chr5:92919100..92919135,+!p3@NR2F1!0.79!6.34!NR2F1;;chr20:42295745..42295765,+!p1@MYBL2!0.78!90.21!MYBL2;;chr7:42276822..42276895,-!p2@GLI3!0.77!15.60!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.77!14.14!HOXB2;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.88!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.43!TOX2;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.88!SMAD3;;chr4:111544219..111544240,-!p1@PITX2!0.73!4.39!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!42.91!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.72!28.77!FOXM1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!528.59!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.84!AEBP1;;chr11:65686952..65686975,+!p5@DRAP1!0.71!25.36!DRAP1;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.78!RCOR2;;chr19:45261550..45261641,+!p6@BCL3!0.71!7.31!BCL3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.83!MSC;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr2:242576431..242576458,-!p3@THAP4!0.70!10.73!THAP4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.70!5.36!ZC3H7B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.70!4.39!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.69!105.82!ZNF703;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.49!ZNF503;;chr12:7079780..7079791,-!p2@PHB2!0.69!22.92!PHB2;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.83!GLI2;;chr2:85981222..85981259,+!p2@ATOH8!0.69!6.83!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.69!3.90!HAND2;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.90!FOXF2;;chr16:86612046..86612065,+!p3@FOXL1!0.69!3.90!FOXL1;;chr20:306489..306564,+!p1@SOX12!0.68!46.81!SOX12;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.51!MEIS2;;chr16:8962202..8962222,-!p3@CARHSP1!0.68!7.31!CARHSP1;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.83!FOXD1;;chr8:72756267..72756296,-!p4@MSC!0.68!5.85!MSC;;chr15:37392094..37392116,-!p6@MEIS2!0.68!4.88!MEIS2;;chr1:8938766..8938774,-!p2@ENO1!0.67!290.63!ENO1;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.22!SALL2;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.78!SMARCD3;;chr8:60031619..60031676,-!p1@TOX!0.67!8.78!TOX;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.85!HOXB4;;chr6:34204921..34204939,+!p3@HMGA1!0.66!125.81!HMGA1;;chr10:77161533..77161546,-!p2@ZNF503!0.66!16.09!ZNF503;;chr16:86600426..86600441,+!p1@FOXC2!0.66!9.75!FOXC2;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.47!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.65!6.83!HLX;;chr19:13134772..13134822,+!p2@NFIX!0.65!5.36!NFIX;;chr2:121493717..121493755,+!p3@GLI2!0.65!3.90!GLI2;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.84!SMAD3;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.88!BATF2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.41!HOXC4;;chr12:56414795..56414836,+!p4@IKZF4!0.64!3.41!IKZF4;;chr15:67418177..67418204,+!p9@SMAD3!0.64!3.41!SMAD3;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.41!HOXA4;;chr2:85981271..85981289,+!p9@ATOH8!0.64!3.41!ATOH8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr17:3571887..3571918,-!p2@TAX1BP3!0.63!42.91!TAX1BP3;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.63!HHEX;;chr1:8483878..8483907,-!p4@RERE!0.63!14.63!RERE;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.75!ZFPM2;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.39!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr1:23885981..23886002,-!p1@ID3!0.62!666.11!ID3;;chr19:3366570..3366619,+!p1@NFIC!0.62!121.91!NFIC;;chr8:49833978..49833996,-!p1@SNAI2!0.62!77.53!SNAI2;;chr19:3359591..3359667,+!p2@NFIC!0.62!43.40!NFIC;;chr16:29817841..29817865,+!p1@MAZ!0.61!79.00!MAZ;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.58!DRAP1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.78!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.61!5.36!RARA;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.36!ETV4;;chr14:75894714..75894733,+!p1@JDP2!0.60!103.38!JDP2;;chr5:178368186..178368238,+!p1@ZNF454!0.60!5.85!ZNF454;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.85!ZNF804A;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr11:113930291..113930339,+!p2@ZBTB16!0.60!5.36!ZBTB16;;chr1:221052700..221052730,+!p5@HLX!0.60!4.88!HLX;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.90!DPF1;;chr8:128748308..128748324,+!p2@MYC!0.59!98.50!MYC;;chr16:4322832..4322907,-!p1@TFAP4!0.59!26.33!TFAP4;;chr5:92918894..92918912,+!p2@NR2F1!0.59!11.22!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.36!TCF12;;chr5:134369973..134369984,-!p3@PITX1!0.59!2.93!PITX1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.93!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.93!HOXA2;;chr11:125034605..125034636,+!p2@PKNOX2!0.59!2.93!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.93!PKNOX2;;chr2:5832508..5832524,+!p1@SOX11!0.59!2.93!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.93!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.92!MXD3;;chr8:49833948..49833973,-!p2@SNAI2!0.58!21.46!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!0.58!17.07!HMGA1;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.60!THAP8;;chr17:38498594..38498661,+!p2@RARA!0.58!11.22!RARA;;chr19:56152332..56152347,+!p4@ZNF580!0.58!7.31!ZNF580;;chrX:48900782..48900793,-!p3@TFE3!0.58!5.85!TFE3;;chr8:60031762..60031803,-!p3@TOX!0.58!4.39!TOX;;chr19:6424813..6424835,-!p1@KHSRP!0.57!211.63!KHSRP;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.77!TEAD2;;chr12:3069037..3069119,+!p2@TEAD4!0.57!11.22!TEAD4;;chr19:926055..926068,+!p2@ARID3A!0.57!6.83!ARID3A;;chr1:164528616..164528660,+!p5@PBX1!0.57!6.34!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.57!5.85!NR2F2;;chr11:8102749..8102769,+!p2@TUB!0.57!5.85!TUB;;chr12:122516678..122516687,+!p3@MLXIP!0.57!5.85!MLXIP;;chr17:42295777..42295816,-!p7@UBTF!0.57!3.41!UBTF;;chr22:41697520..41697613,+!p1@ZC3H7B!0.56!185.79!ZC3H7B;;chr9:35732647..35732678,+!p2@CREB3!0.56!18.04!CREB3;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.19!SIX1;;chr12:54447599..54447630,+!p3@HOXC4!0.56!3.41!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.41!TBX18;;chr2:46524537..46524553,+!p1@EPAS1!0.55!319.89!EPAS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.55!233.09!TAX1BP3;;chr19:6424783..6424802,-!p2@KHSRP!0.55!65.83!KHSRP;;chr6:41514078..41514158,+!p1@FOXP4!0.55!28.77!FOXP4;;chr8:48650697..48650708,-!p2@CEBPD!0.55!24.38!CEBPD;;chr16:29818160..29818188,+!p6@MAZ!0.55!14.63!MAZ;;chr8:60031809..60031835,-!p4@TOX!0.55!3.41!TOX;;chr1:8938736..8938756,-!p1@ENO1!0.54!3507.06!ENO1;;chrX:48900871..48900890,-!p1@TFE3!0.54!162.87!TFE3;;chr19:13106214..13106382,+!p1@NFIX!0.54!72.66!NFIX;;chr17:17740330..17740349,-!p3@SREBF1!0.54!20.48!SREBF1;;chr17:17726907..17726958,-!p2@SREBF1!0.54!19.02!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.54!3.90!AR;;chr9:132427883..132427951,+!p2@PRRX2!0.54!2.44!PRRX2;;chr15:80843484..80843499,+!p5@ARNT2!0.54!2.44!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.44!BNC1;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.54!2.44!ZNF469;;chr6:35464729..35464738,-!p3@TEAD3!0.54!2.44!TEAD3;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.44!FOSL1;;chr19:50542543..50542548,+!p2@ZNF473!0.54!2.44!ZNF473;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.54!2.44!PEG3;;chr2:66666432..66666462,+!p7@MEIS1!0.54!2.44!MEIS1;;chr2:85980903..85980914,+!p11@ATOH8!0.54!2.44!ATOH8;;chr15:96873921..96873946,+!p1@NR2F2!0.53!86.80!NR2F2;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.47!CREB3;;chr6:31126291..31126399,+!p1@TCF19!0.53!28.77!TCF19;;chr15:96873984..96873999,+!p3@NR2F2!0.53!21.94!NR2F2;;chr12:54772960..54773015,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001043;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.ctss.bed.gz
|id=FF:11508-119G5
|id=FF:11508-119G5
|is_a=EFO:0002091;;FF:0000182
|is_a=EFO:0002091;;FF:0000182
|is_obsolete=
|is_obsolete=
|library_id=CNhs11324
|library_id_phase_based=2:CNhs11324
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11508
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TAGCTT.11508
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11508
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TAGCTT.11508
|name=Smooth Muscle Cells - Esophageal, donor1
|name=Smooth Muscle Cells - Esophageal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11324,LSID768,release014,COMPLETED
|profile_hcage=CNhs11324,LSID768,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10008,,,
|profile_srnaseq=SRhi10008,,,
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|rna_catalog_number=SC2715
Line 58: Line 82:
|rna_tube_id=119G5
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.TAGCTT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 80: Line 106:
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|top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11508-119G5;search_select_hide=table117:FF:11508-119G5
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Smooth Muscle Cells - Esophageal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11324
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueesophagus
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:575
catalog numberSC2715
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004907
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11324 CAGE DRX008489 DRR009361
Accession ID Hg19

Library idBAMCTSS
CNhs11324 DRZ000786 DRZ002171
Accession ID Hg38

Library idBAMCTSS
CNhs11324 DRZ012136 DRZ013521
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004907
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.TAGCTT sRNA-Seq DRX037116 DRR041482
Accession ID Hg19

Library idBAMCTSS
SRhi10008.TAGCTT DRZ007124


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0557
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.00953
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.296
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.136
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0636
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.172
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.296
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.172
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.656
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.172
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.344
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.296
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.391
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0537
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11324

Jaspar motifP-value
MA0002.20.692
MA0003.10.307
MA0004.10.298
MA0006.10.472
MA0007.10.0137
MA0009.10.257
MA0014.10.946
MA0017.10.244
MA0018.20.0566
MA0019.10.94
MA0024.10.611
MA0025.10.567
MA0027.10.623
MA0028.10.112
MA0029.10.421
MA0030.10.151
MA0031.10.0388
MA0035.20.235
MA0038.10.00442
MA0039.20.389
MA0040.10.271
MA0041.10.426
MA0042.10.87
MA0043.10.0745
MA0046.10.0214
MA0047.20.72
MA0048.10.376
MA0050.10.00213
MA0051.10.00817
MA0052.10.0552
MA0055.10.00979
MA0057.10.352
MA0058.10.378
MA0059.10.23
MA0060.12.06037e-5
MA0061.10.616
MA0062.28.94233e-4
MA0065.20.0709
MA0066.10.401
MA0067.10.0155
MA0068.10.619
MA0069.10.618
MA0070.10.0121
MA0071.10.0767
MA0072.10.737
MA0073.10.871
MA0074.10.449
MA0076.10.0226
MA0077.10.515
MA0078.10.81
MA0079.20.993
MA0080.26.19773e-6
MA0081.10.0296
MA0083.11.28316e-6
MA0084.10.632
MA0087.10.442
MA0088.10.194
MA0090.10.0021
MA0091.18.84785e-4
MA0092.10.216
MA0093.10.34
MA0099.20.161
MA0100.10.333
MA0101.10.761
MA0102.20.308
MA0103.10.958
MA0104.20.872
MA0105.10.565
MA0106.10.166
MA0107.10.647
MA0108.28.00952e-11
MA0111.10.382
MA0112.20.0168
MA0113.10.00632
MA0114.10.0755
MA0115.10.524
MA0116.10.226
MA0117.10.452
MA0119.10.144
MA0122.10.605
MA0124.10.799
MA0125.10.0963
MA0131.10.477
MA0135.10.225
MA0136.17.72742e-7
MA0137.20.0651
MA0138.20.465
MA0139.10.804
MA0140.10.24
MA0141.10.0117
MA0142.10.515
MA0143.10.245
MA0144.10.391
MA0145.10.226
MA0146.10.0288
MA0147.10.695
MA0148.10.484
MA0149.10.599
MA0150.10.666
MA0152.10.818
MA0153.10.0579
MA0154.10.172
MA0155.10.0798
MA0156.14.25189e-5
MA0157.10.17
MA0159.10.946
MA0160.10.163
MA0162.10.154
MA0163.10.174
MA0164.10.751
MA0258.10.0395
MA0259.10.861



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11324

Novel motifP-value
10.925
100.615
1000.13
1010.288
1020.62
1030.897
1040.127
1050.029
1060.118
1070.0328
1080.681
1090.0569
110.0414
1100.0978
1110.725
1120.626
1130.93
1140.948
1150.929
1160.0473
1170.828
1180.603
1190.854
120.371
1200.523
1210.266
1220.789
1230.0465
1240.406
1250.284
1260.531
1270.866
1280.346
1290.808
130.289
1300.177
1310.683
1320.548
1330.264
1340.161
1350.285
1360.842
1370.073
1380.0357
1390.715
140.906
1400.567
1410.563
1420.11
1430.376
1440.441
1450.284
1460.254
1470.379
1480.379
1490.317
150.673
1500.496
1510.539
1520.108
1530.069
1540.212
1550.395
1560.473
1570.282
1580.18
1590.886
160.168
1600.0544
1610.244
1620.0647
1630.954
1640.637
1650.0801
1660.931
1670.149
1680.618
1690.0884
170.158
180.242
190.0968
20.451
200.56
210.883
220.105
230.585
240.54
250.565
260.00642
270.476
280.146
290.986
30.78
300.127
310.357
321.95543e-6
330.436
340.0913
350.575
360.661
370.593
380.438
390.484
40.438
400.00547
410.265
420.568
430.274
440.65
450.344
460.177
470.23
480.108
490.177
50.734
500.32
510.328
520.521
530.673
540.636
550.606
560.184
570.514
580.342
590.052
60.375
600.54
610.652
620.497
630.317
640.107
650.0615
660.203
670.948
680.0603
690.15
70.728
700.861
710.0728
720.584
730.0642
740.745
750.696
760.633
770.0306
780.576
790.378
80.0288
800.827
810.852
820.692
830.857
840.377
850.373
860.905
870.27
880.18
890.291
90.176
900.0254
910.359
920.426
930.538
940.203
950.343
960.953
970.545
980.629
996.57564e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11324


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002599 (smooth muscle cell of the esophagus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000182 (human esophageal smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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