FF:11512-119G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005960 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005960 | ||
|accession_numbers=CAGE;DRX008478;DRR009350;DRZ000775;DRZ002160;DRZ012125;DRZ013510 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037040;DRR041406;DRZ007048 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000167,FF:0000004,FF:0000179 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11512-119G9 | |id=FF:11512-119G9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000179;;FF:0000998 | ||
|is_obsolete= | |||
|library_id=CNhs11328 | |||
|library_id_phase_based=2:CNhs11328 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11512 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TAGCTT.11512 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11512 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TAGCTT.11512 | |||
|name=Smooth Muscle Cells - Bronchial, donor1 | |name=Smooth Muscle Cells - Bronchial, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11328,LSID768,release014,COMPLETED | |profile_hcage=CNhs11328,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0191750419381125,0,-0.0978690601690154,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.0989542966657617,0,-0.0543687136826659,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.164967091391252,0,0,0,0,0,0,0,0,0.0252621272200465,0,0,0,0.179493072024499,0,0.0514809683766065,0.179493072024499,-0.0969923612426051,0,0,0.00161066945266475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0227356487764474,0,0,0.0128133068765504,0,0,0,0,0,0,0,-0.00184214846619235,0.142347611844829,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105648514076676,0,0,0,0,0.0669199870007253,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3405 | |rna_catalog_number=SC3405 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119G9 | |rna_tube_id=119G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.85863478702461e-217!GO:0005737;cytoplasm;2.16386631397125e-178!GO:0043231;intracellular membrane-bound organelle;5.2046583163741e-159!GO:0043227;membrane-bound organelle;1.38863386119613e-158!GO:0043226;organelle;3.61698191834536e-155!GO:0043229;intracellular organelle;4.85506197048986e-155!GO:0044444;cytoplasmic part;2.29279502413612e-137!GO:0044422;organelle part;1.0805172840728e-119!GO:0044446;intracellular organelle part;1.05082304173219e-118!GO:0005739;mitochondrion;3.09681806035676e-76!GO:0032991;macromolecular complex;4.46674568164871e-74!GO:0030529;ribonucleoprotein complex;2.78516941138813e-72!GO:0044237;cellular metabolic process;1.24856875847696e-70!GO:0044238;primary metabolic process;2.16234395372639e-70!GO:0005515;protein binding;1.35847581193996e-63!GO:0043170;macromolecule metabolic process;5.1644694467442e-59!GO:0043233;organelle lumen;7.73962485828058e-59!GO:0031974;membrane-enclosed lumen;7.73962485828058e-59!GO:0005840;ribosome;1.79291273539026e-51!GO:0044429;mitochondrial part;1.05639094032973e-50!GO:0031090;organelle membrane;2.32809157106976e-50!GO:0044428;nuclear part;7.9244093119179e-49!GO:0005634;nucleus;7.41968208715576e-48!GO:0003735;structural constituent of ribosome;9.83178531764754e-47!GO:0003723;RNA binding;4.09070827498668e-46!GO:0009058;biosynthetic process;2.81486115462507e-43!GO:0006412;translation;3.76842905195532e-42!GO:0019538;protein metabolic process;1.39050986889749e-40!GO:0033279;ribosomal subunit;7.93653866114676e-40!GO:0031967;organelle envelope;1.18227107216909e-39!GO:0031975;envelope;2.12478458100526e-39!GO:0044249;cellular biosynthetic process;6.30714616687804e-39!GO:0016043;cellular component organization and biogenesis;1.14181861101674e-38!GO:0044260;cellular macromolecule metabolic process;1.31566755086722e-36!GO:0043234;protein complex;1.82762562728675e-35!GO:0009059;macromolecule biosynthetic process;2.25157167244591e-35!GO:0044267;cellular protein metabolic process;2.3259860294314e-35!GO:0005829;cytosol;3.02348867732565e-35!GO:0005740;mitochondrial envelope;1.36240541992035e-34!GO:0015031;protein transport;2.04728071633578e-33!GO:0006396;RNA processing;2.04728071633578e-33!GO:0031966;mitochondrial membrane;2.25223846307727e-32!GO:0033036;macromolecule localization;5.76426562874501e-32!GO:0031981;nuclear lumen;7.21657500933117e-31!GO:0045184;establishment of protein localization;1.44737827408683e-30!GO:0019866;organelle inner membrane;1.58574383671504e-30!GO:0008104;protein localization;2.68234009865024e-30!GO:0005743;mitochondrial inner membrane;1.11903290665183e-29!GO:0043283;biopolymer metabolic process;8.95641157893655e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.70368344443655e-28!GO:0006996;organelle organization and biogenesis;6.15549632148161e-27!GO:0010467;gene expression;4.45557353084542e-26!GO:0046907;intracellular transport;1.15520330837261e-25!GO:0065003;macromolecular complex assembly;2.20402863232447e-24!GO:0016071;mRNA metabolic process;2.4561232270144e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.95556593121276e-24!GO:0043228;non-membrane-bound organelle;3.82149174290938e-23!GO:0043232;intracellular non-membrane-bound organelle;3.82149174290938e-23!GO:0044445;cytosolic part;6.64004870337253e-23!GO:0006886;intracellular protein transport;1.13782935519913e-22!GO:0008380;RNA splicing;4.07492517453154e-22!GO:0022607;cellular component assembly;7.50770136052214e-22!GO:0015934;large ribosomal subunit;2.48842930949021e-21!GO:0044455;mitochondrial membrane part;7.68977222643195e-21!GO:0006119;oxidative phosphorylation;1.0867687321454e-20!GO:0006397;mRNA processing;1.10848780677545e-20!GO:0005783;endoplasmic reticulum;2.4189656309831e-20!GO:0006259;DNA metabolic process;4.30483718177791e-20!GO:0031980;mitochondrial lumen;7.54079858658406e-20!GO:0005759;mitochondrial matrix;7.54079858658406e-20!GO:0015935;small ribosomal subunit;1.37779285496108e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.82095736635756e-19!GO:0005654;nucleoplasm;2.0954642787996e-17!GO:0005746;mitochondrial respiratory chain;2.72117312969787e-17!GO:0012505;endomembrane system;2.86628657181572e-17!GO:0044432;endoplasmic reticulum part;3.66039874917262e-17!GO:0006457;protein folding;6.40148681042357e-17!GO:0048770;pigment granule;1.53455789998876e-16!GO:0042470;melanosome;1.53455789998876e-16!GO:0005681;spliceosome;2.26675338011709e-16!GO:0051186;cofactor metabolic process;5.01379646783738e-16!GO:0051649;establishment of cellular localization;1.43957869117453e-15!GO:0051641;cellular localization;2.56291240221532e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.70465165036169e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.71945701774066e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.71945701774066e-15!GO:0003954;NADH dehydrogenase activity;4.71945701774066e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.71945701774066e-15!GO:0005761;mitochondrial ribosome;5.7178696007875e-15!GO:0000313;organellar ribosome;5.7178696007875e-15!GO:0007049;cell cycle;5.7178696007875e-15!GO:0044451;nucleoplasm part;7.95441494877763e-15!GO:0005730;nucleolus;9.00691446569425e-15!GO:0008134;transcription factor binding;4.93710016256365e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17574940083464e-13!GO:0016874;ligase activity;1.21436961068216e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.21436961068216e-13!GO:0042773;ATP synthesis coupled electron transport;1.21436961068216e-13!GO:0005794;Golgi apparatus;2.63438612463399e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.05581537635156e-13!GO:0045271;respiratory chain complex I;3.05581537635156e-13!GO:0005747;mitochondrial respiratory chain complex I;3.05581537635156e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.00815523194438e-12!GO:0006512;ubiquitin cycle;1.62430019041087e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.91158414321585e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.79946019153565e-12!GO:0000166;nucleotide binding;3.04078858479693e-12!GO:0005789;endoplasmic reticulum membrane;3.51468615445263e-12!GO:0016462;pyrophosphatase activity;3.77298052166256e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.90659689756837e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;4.34072308439622e-12!GO:0009055;electron carrier activity;4.50976369140693e-12!GO:0022402;cell cycle process;5.05639644607805e-12!GO:0051082;unfolded protein binding;7.41817045714073e-12!GO:0012501;programmed cell death;7.70706859858448e-12!GO:0000502;proteasome complex (sensu Eukaryota);9.08010197483897e-12!GO:0006732;coenzyme metabolic process;9.69956092570812e-12!GO:0017111;nucleoside-triphosphatase activity;1.35600443347526e-11!GO:0006915;apoptosis;1.36254794554129e-11!GO:0044265;cellular macromolecule catabolic process;1.6475917942852e-11!GO:0000278;mitotic cell cycle;2.1482886238326e-11!GO:0044248;cellular catabolic process;2.59197745098796e-11!GO:0006605;protein targeting;2.60544423562566e-11!GO:0043285;biopolymer catabolic process;3.70106384915852e-11!GO:0043412;biopolymer modification;5.46479895136859e-11!GO:0008219;cell death;1.68145976204929e-10!GO:0016265;death;1.68145976204929e-10!GO:0009057;macromolecule catabolic process;2.07386531278064e-10!GO:0022618;protein-RNA complex assembly;2.41892155228101e-10!GO:0048193;Golgi vesicle transport;3.97115786082305e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;4.43126817918916e-10!GO:0005793;ER-Golgi intermediate compartment;5.23637418742831e-10!GO:0019941;modification-dependent protein catabolic process;5.55062982826164e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.55062982826164e-10!GO:0006464;protein modification process;6.88180640976826e-10!GO:0044257;cellular protein catabolic process;7.27193769393156e-10!GO:0006511;ubiquitin-dependent protein catabolic process;9.06658405859428e-10!GO:0016491;oxidoreductase activity;1.19999340760597e-09!GO:0003712;transcription cofactor activity;1.4054734838416e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.46145870111833e-09!GO:0008135;translation factor activity, nucleic acid binding;1.65421913980541e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.96493989830492e-09!GO:0000375;RNA splicing, via transesterification reactions;1.96493989830492e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.96493989830492e-09!GO:0003676;nucleic acid binding;2.1573938331393e-09!GO:0042254;ribosome biogenesis and assembly;2.74447554728649e-09!GO:0006163;purine nucleotide metabolic process;4.62652243814259e-09!GO:0006974;response to DNA damage stimulus;4.88297197903956e-09!GO:0030163;protein catabolic process;4.88297197903956e-09!GO:0051276;chromosome organization and biogenesis;5.1890097154206e-09!GO:0006323;DNA packaging;5.89833198626283e-09!GO:0016192;vesicle-mediated transport;5.89833198626283e-09!GO:0009259;ribonucleotide metabolic process;6.58181263719741e-09!GO:0009150;purine ribonucleotide metabolic process;6.81344998937692e-09!GO:0006399;tRNA metabolic process;8.4575766118304e-09!GO:0051188;cofactor biosynthetic process;1.14327932839351e-08!GO:0048523;negative regulation of cellular process;1.22132908384734e-08!GO:0007005;mitochondrion organization and biogenesis;1.51583629362155e-08!GO:0032553;ribonucleotide binding;1.85602887144897e-08!GO:0032555;purine ribonucleotide binding;1.85602887144897e-08!GO:0042981;regulation of apoptosis;1.85602887144897e-08!GO:0043067;regulation of programmed cell death;2.3282134143326e-08!GO:0051726;regulation of cell cycle;2.33255265213964e-08!GO:0006164;purine nucleotide biosynthetic process;2.48069843438734e-08!GO:0017076;purine nucleotide binding;2.81573592647125e-08!GO:0000074;regulation of progression through cell cycle;2.82085130144132e-08!GO:0016070;RNA metabolic process;2.92717839939054e-08!GO:0044427;chromosomal part;3.11830361034069e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.18178434097018e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.61207397614131e-08!GO:0005694;chromosome;4.12828298535471e-08!GO:0043687;post-translational protein modification;4.34560865872135e-08!GO:0009260;ribonucleotide biosynthetic process;4.65357426873888e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.74889243163927e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.11278197905758e-08!GO:0005768;endosome;7.02253625167841e-08!GO:0009141;nucleoside triphosphate metabolic process;7.40361291850033e-08!GO:0065004;protein-DNA complex assembly;7.72054766432959e-08!GO:0016740;transferase activity;7.72054766432959e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.22990578986147e-08!GO:0022403;cell cycle phase;9.46400753172659e-08!GO:0006461;protein complex assembly;9.80865947252644e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.01546431004465e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.01546431004465e-07!GO:0006333;chromatin assembly or disassembly;1.13514565009919e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.41482194264863e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.63819122080901e-07!GO:0009719;response to endogenous stimulus;1.67264757160053e-07!GO:0048519;negative regulation of biological process;2.434936151024e-07!GO:0000785;chromatin;2.46457024037569e-07!GO:0005635;nuclear envelope;2.67679785358919e-07!GO:0031497;chromatin assembly;2.75020149659763e-07!GO:0008639;small protein conjugating enzyme activity;3.08838105968021e-07!GO:0006334;nucleosome assembly;3.19475099865793e-07!GO:0006281;DNA repair;3.26034797952387e-07!GO:0007067;mitosis;3.57748392072807e-07!GO:0000087;M phase of mitotic cell cycle;3.70049153169399e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.02838377152734e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.02838377152734e-07!GO:0006091;generation of precursor metabolites and energy;5.04712505829775e-07!GO:0004842;ubiquitin-protein ligase activity;6.37005988960417e-07!GO:0006913;nucleocytoplasmic transport;6.58276301848389e-07!GO:0005788;endoplasmic reticulum lumen;6.71946153148223e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.03871375774776e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.21890744657061e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.21890744657061e-07!GO:0015986;ATP synthesis coupled proton transport;7.5758782250174e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.5758782250174e-07!GO:0003743;translation initiation factor activity;7.5758782250174e-07!GO:0009060;aerobic respiration;7.5758782250174e-07!GO:0019787;small conjugating protein ligase activity;8.15512780055424e-07!GO:0005524;ATP binding;8.62515768354453e-07!GO:0032559;adenyl ribonucleotide binding;9.64690555397571e-07!GO:0031965;nuclear membrane;1.02761134488518e-06!GO:0006260;DNA replication;1.0989554362859e-06!GO:0046034;ATP metabolic process;1.0989554362859e-06!GO:0017038;protein import;1.11876549426526e-06!GO:0051169;nuclear transport;1.22344545509282e-06!GO:0009056;catabolic process;1.28103434778789e-06!GO:0006364;rRNA processing;1.37957833043491e-06!GO:0009117;nucleotide metabolic process;1.42135838408666e-06!GO:0045333;cellular respiration;1.43315062046494e-06!GO:0008565;protein transporter activity;1.50394877841937e-06!GO:0030554;adenyl nucleotide binding;1.75903332561894e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.82543798747488e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.82543798747488e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.82543798747488e-06!GO:0008654;phospholipid biosynthetic process;2.26205178452128e-06!GO:0006366;transcription from RNA polymerase II promoter;2.27573062650863e-06!GO:0006916;anti-apoptosis;2.37338115501419e-06!GO:0065002;intracellular protein transport across a membrane;2.51757970043942e-06!GO:0016072;rRNA metabolic process;2.60506494978769e-06!GO:0016881;acid-amino acid ligase activity;2.68608772404276e-06!GO:0045259;proton-transporting ATP synthase complex;2.73713639693653e-06!GO:0016604;nuclear body;2.73905222279181e-06!GO:0005773;vacuole;2.88574019922284e-06!GO:0030120;vesicle coat;2.96793051024517e-06!GO:0030662;coated vesicle membrane;2.96793051024517e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.08812307319579e-06!GO:0009108;coenzyme biosynthetic process;3.28318153883908e-06!GO:0043069;negative regulation of programmed cell death;3.36380073320556e-06!GO:0016564;transcription repressor activity;3.43463735495364e-06!GO:0006413;translational initiation;3.56338865721911e-06!GO:0043066;negative regulation of apoptosis;4.00313904187326e-06!GO:0003714;transcription corepressor activity;4.29237513133366e-06!GO:0003924;GTPase activity;4.29299160482661e-06!GO:0005762;mitochondrial large ribosomal subunit;4.5148381883146e-06!GO:0000315;organellar large ribosomal subunit;4.5148381883146e-06!GO:0044431;Golgi apparatus part;4.69067133870193e-06!GO:0006446;regulation of translational initiation;5.0044917196582e-06!GO:0043038;amino acid activation;5.0044917196582e-06!GO:0006418;tRNA aminoacylation for protein translation;5.0044917196582e-06!GO:0043039;tRNA aminoacylation;5.0044917196582e-06!GO:0048475;coated membrane;5.7565581833714e-06!GO:0030117;membrane coat;5.7565581833714e-06!GO:0031988;membrane-bound vesicle;5.92360562589808e-06!GO:0016853;isomerase activity;6.67704393736101e-06!GO:0006754;ATP biosynthetic process;7.15764906104453e-06!GO:0006753;nucleoside phosphate metabolic process;7.15764906104453e-06!GO:0019829;cation-transporting ATPase activity;7.19683025057305e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.82730414830585e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.82730414830585e-06!GO:0051329;interphase of mitotic cell cycle;8.47967001769438e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.07431344668705e-06!GO:0044440;endosomal part;9.94681972223211e-06!GO:0010008;endosome membrane;9.94681972223211e-06!GO:0044453;nuclear membrane part;1.02545547614826e-05!GO:0051301;cell division;1.02545547614826e-05!GO:0016779;nucleotidyltransferase activity;1.24047658013055e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.27276214237122e-05!GO:0008610;lipid biosynthetic process;1.34515270999314e-05!GO:0005905;coated pit;1.38415123956531e-05!GO:0016049;cell growth;1.6122555730128e-05!GO:0031324;negative regulation of cellular metabolic process;1.7555707425313e-05!GO:0008361;regulation of cell size;1.81540348847488e-05!GO:0051246;regulation of protein metabolic process;1.85206782454994e-05!GO:0005667;transcription factor complex;2.24803179988588e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.32922160647632e-05!GO:0051325;interphase;2.47444087916032e-05!GO:0006099;tricarboxylic acid cycle;2.63144753017932e-05!GO:0046356;acetyl-CoA catabolic process;2.63144753017932e-05!GO:0005770;late endosome;2.77704017880915e-05!GO:0000323;lytic vacuole;2.84222224849631e-05!GO:0005764;lysosome;2.84222224849631e-05!GO:0016563;transcription activator activity;2.98488838911082e-05!GO:0006084;acetyl-CoA metabolic process;3.41232618595629e-05!GO:0050794;regulation of cellular process;3.4874831718195e-05!GO:0003899;DNA-directed RNA polymerase activity;3.4874831718195e-05!GO:0051187;cofactor catabolic process;3.52090564053523e-05!GO:0045454;cell redox homeostasis;3.60007888896012e-05!GO:0042623;ATPase activity, coupled;4.02569468591022e-05!GO:0000279;M phase;4.39906658160985e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.44386263566779e-05!GO:0016568;chromatin modification;4.78885681160552e-05!GO:0046474;glycerophospholipid biosynthetic process;5.14618913293334e-05!GO:0003697;single-stranded DNA binding;5.14618913293334e-05!GO:0006752;group transfer coenzyme metabolic process;5.18963984375327e-05!GO:0031252;leading edge;5.54401096887559e-05!GO:0004298;threonine endopeptidase activity;6.06414568290749e-05!GO:0031410;cytoplasmic vesicle;6.42689074142116e-05!GO:0000314;organellar small ribosomal subunit;7.50301550383394e-05!GO:0005763;mitochondrial small ribosomal subunit;7.50301550383394e-05!GO:0009109;coenzyme catabolic process;7.99731806488375e-05!GO:0045786;negative regulation of progression through cell cycle;7.99874355382038e-05!GO:0016126;sterol biosynthetic process;7.99874355382038e-05!GO:0005791;rough endoplasmic reticulum;8.0093451596623e-05!GO:0031982;vesicle;8.13335662797625e-05!GO:0044262;cellular carbohydrate metabolic process;8.31254786244587e-05!GO:0001558;regulation of cell growth;8.61845806266014e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.61845806266014e-05!GO:0043623;cellular protein complex assembly;9.48020377068281e-05!GO:0015630;microtubule cytoskeleton;9.55311264490066e-05!GO:0032446;protein modification by small protein conjugation;0.000108720451654753!GO:0016887;ATPase activity;0.000126287596391398!GO:0016859;cis-trans isomerase activity;0.00013079763476187!GO:0016567;protein ubiquitination;0.000133533498791938!GO:0048522;positive regulation of cellular process;0.000135165498487265!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000136190674897172!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000137829962046271!GO:0000139;Golgi membrane;0.000143468080055516!GO:0030133;transport vesicle;0.000146686560201992!GO:0003713;transcription coactivator activity;0.000154463740959117!GO:0006793;phosphorus metabolic process;0.000169091974385117!GO:0006796;phosphate metabolic process;0.000169091974385117!GO:0051427;hormone receptor binding;0.000181172856677721!GO:0033116;ER-Golgi intermediate compartment membrane;0.000188672261266086!GO:0005643;nuclear pore;0.000194246643547252!GO:0016607;nuclear speck;0.000194246643547252!GO:0030176;integral to endoplasmic reticulum membrane;0.000194246643547252!GO:0030867;rough endoplasmic reticulum membrane;0.000203229471879778!GO:0009892;negative regulation of metabolic process;0.000205647363913265!GO:0019899;enzyme binding;0.000219843826410106!GO:0000245;spliceosome assembly;0.000232902117792142!GO:0006626;protein targeting to mitochondrion;0.000243556934216085!GO:0016310;phosphorylation;0.0002707095917955!GO:0000786;nucleosome;0.000275844641303319!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000279785125268934!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000279858243500057!GO:0031968;organelle outer membrane;0.000281457450241921!GO:0043284;biopolymer biosynthetic process;0.000285931741686265!GO:0016787;hydrolase activity;0.000313545438786349!GO:0019867;outer membrane;0.000327750848367818!GO:0035257;nuclear hormone receptor binding;0.000329182012586063!GO:0046930;pore complex;0.000373408142728486!GO:0043681;protein import into mitochondrion;0.000376972478896171!GO:0005525;GTP binding;0.000376972478896171!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0003916924665026!GO:0005798;Golgi-associated vesicle;0.00040039714346397!GO:0051789;response to protein stimulus;0.00041153905473263!GO:0006986;response to unfolded protein;0.00041153905473263!GO:0065009;regulation of a molecular function;0.00044638708378205!GO:0007006;mitochondrial membrane organization and biogenesis;0.000484364673035761!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000487178358863398!GO:0005741;mitochondrial outer membrane;0.000493350742872136!GO:0005048;signal sequence binding;0.000495764433969965!GO:0046467;membrane lipid biosynthetic process;0.000498020316814548!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000501379434664859!GO:0050789;regulation of biological process;0.000527744219500071!GO:0016481;negative regulation of transcription;0.000581828403464239!GO:0006839;mitochondrial transport;0.00059801208986775!GO:0008033;tRNA processing;0.000612909765508321!GO:0005769;early endosome;0.000643200822317497!GO:0051170;nuclear import;0.000667968056094029!GO:0019843;rRNA binding;0.000761438353638786!GO:0008250;oligosaccharyl transferase complex;0.00091967352315907!GO:0006606;protein import into nucleus;0.00101630427005313!GO:0043566;structure-specific DNA binding;0.0010797147465844!GO:0009165;nucleotide biosynthetic process;0.0010797147465844!GO:0030036;actin cytoskeleton organization and biogenesis;0.00109740271554918!GO:0006979;response to oxidative stress;0.00111680551493456!GO:0006695;cholesterol biosynthetic process;0.00115859767667301!GO:0000151;ubiquitin ligase complex;0.00117401251909856!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00121559573085316!GO:0008632;apoptotic program;0.00122651367642456!GO:0006082;organic acid metabolic process;0.00134767632160791!GO:0030132;clathrin coat of coated pit;0.00137252459259165!GO:0051920;peroxiredoxin activity;0.00150233048000559!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00151857178532641!GO:0030880;RNA polymerase complex;0.00152909042207456!GO:0019752;carboxylic acid metabolic process;0.00155260959044993!GO:0006414;translational elongation;0.00157009462704922!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00157009462704922!GO:0015002;heme-copper terminal oxidase activity;0.00157009462704922!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00157009462704922!GO:0004129;cytochrome-c oxidase activity;0.00157009462704922!GO:0046489;phosphoinositide biosynthetic process;0.00158884662114887!GO:0006613;cotranslational protein targeting to membrane;0.0016425133345154!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00164305777700058!GO:0031902;late endosome membrane;0.00170300324345355!GO:0006778;porphyrin metabolic process;0.00174034872937153!GO:0033013;tetrapyrrole metabolic process;0.00174034872937153!GO:0007243;protein kinase cascade;0.00175063579048828!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00181380256823124!GO:0040008;regulation of growth;0.00181409890553121!GO:0018196;peptidyl-asparagine modification;0.00196961412973197!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00196961412973197!GO:0006650;glycerophospholipid metabolic process;0.00210712434751041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00212512698801055!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00216789497463094!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00216789497463094!GO:0032561;guanyl ribonucleotide binding;0.00217836723803891!GO:0019001;guanyl nucleotide binding;0.00217836723803891!GO:0030118;clathrin coat;0.00218732340816061!GO:0046483;heterocycle metabolic process;0.00228043334049369!GO:0005774;vacuolar membrane;0.00228154065120104!GO:0043488;regulation of mRNA stability;0.0023314879282081!GO:0043487;regulation of RNA stability;0.0023314879282081!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00237016113581924!GO:0016044;membrane organization and biogenesis;0.00273935631694514!GO:0042802;identical protein binding;0.00284415033753487!GO:0008026;ATP-dependent helicase activity;0.00288980615974491!GO:0005885;Arp2/3 protein complex;0.00290176834485329!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00303509220377885!GO:0005819;spindle;0.00309428971569951!GO:0051348;negative regulation of transferase activity;0.0033406655246202!GO:0033673;negative regulation of kinase activity;0.00334662736836013!GO:0006469;negative regulation of protein kinase activity;0.00334662736836013!GO:0045941;positive regulation of transcription;0.00343236888131944!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00358461082856371!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00358461082856371!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00358461082856371!GO:0048468;cell development;0.00364878182403094!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00366958438635216!GO:0000428;DNA-directed RNA polymerase complex;0.00366958438635216!GO:0008637;apoptotic mitochondrial changes;0.00373965084538834!GO:0048518;positive regulation of biological process;0.00374547218151342!GO:0007010;cytoskeleton organization and biogenesis;0.00377574717606737!GO:0005813;centrosome;0.00377916668148168!GO:0006779;porphyrin biosynthetic process;0.00396026064515327!GO:0033014;tetrapyrrole biosynthetic process;0.00396026064515327!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00398837047712011!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00420737225258904!GO:0043021;ribonucleoprotein binding;0.00425019654240465!GO:0007264;small GTPase mediated signal transduction;0.00454484697336239!GO:0005684;U2-dependent spliceosome;0.00468955154301052!GO:0016125;sterol metabolic process;0.0048069668508591!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00495108925080217!GO:0050657;nucleic acid transport;0.00498223651055103!GO:0051236;establishment of RNA localization;0.00498223651055103!GO:0050658;RNA transport;0.00498223651055103!GO:0004386;helicase activity;0.00498223651055103!GO:0042168;heme metabolic process;0.00498257064832223!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00498257064832223!GO:0015399;primary active transmembrane transporter activity;0.00498257064832223!GO:0006520;amino acid metabolic process;0.00504992217340801!GO:0006595;polyamine metabolic process;0.00504992217340801!GO:0008286;insulin receptor signaling pathway;0.00507592933903033!GO:0006403;RNA localization;0.00507991928029568!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00509901345141717!GO:0007040;lysosome organization and biogenesis;0.00539062237073351!GO:0030029;actin filament-based process;0.00551974324478826!GO:0006118;electron transport;0.00576531885368114!GO:0031072;heat shock protein binding;0.00580502395905244!GO:0015992;proton transport;0.00581759384838287!GO:0005815;microtubule organizing center;0.00581759384838287!GO:0044437;vacuolar part;0.00616994273092458!GO:0005765;lysosomal membrane;0.00624954474765649!GO:0006818;hydrogen transport;0.00635091770610211!GO:0043065;positive regulation of apoptosis;0.00644772806933485!GO:0044452;nucleolar part;0.00647649747345138!GO:0017166;vinculin binding;0.00693829353262461!GO:0007033;vacuole organization and biogenesis;0.00695983241924846!GO:0030658;transport vesicle membrane;0.00707398978287248!GO:0045893;positive regulation of transcription, DNA-dependent;0.00712250120197536!GO:0016860;intramolecular oxidoreductase activity;0.00727896415167295!GO:0022890;inorganic cation transmembrane transporter activity;0.00738914928612355!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00749285853520608!GO:0042158;lipoprotein biosynthetic process;0.0075113349701119!GO:0043068;positive regulation of programmed cell death;0.0075113349701119!GO:0004576;oligosaccharyl transferase activity;0.00808253701511022!GO:0030125;clathrin vesicle coat;0.00830487845854439!GO:0030665;clathrin coated vesicle membrane;0.00830487845854439!GO:0006643;membrane lipid metabolic process;0.00831146180488168!GO:0030119;AP-type membrane coat adaptor complex;0.00842312575920527!GO:0006740;NADPH regeneration;0.00853352220680268!GO:0006098;pentose-phosphate shunt;0.00853352220680268!GO:0006509;membrane protein ectodomain proteolysis;0.00855160555314813!GO:0033619;membrane protein proteolysis;0.00855160555314813!GO:0003684;damaged DNA binding;0.00859462793520823!GO:0048487;beta-tubulin binding;0.00887989463578284!GO:0006497;protein amino acid lipidation;0.00917858798457023!GO:0050790;regulation of catalytic activity;0.00935839452474066!GO:0045792;negative regulation of cell size;0.00979222773818871!GO:0045892;negative regulation of transcription, DNA-dependent;0.00979222773818871!GO:0030308;negative regulation of cell growth;0.0100595369851943!GO:0016272;prefoldin complex;0.0101819972797077!GO:0004177;aminopeptidase activity;0.0102334882752441!GO:0006289;nucleotide-excision repair;0.0105622655364297!GO:0006783;heme biosynthetic process;0.0108628156058447!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0108715578961199!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0108813908471391!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0111587161727391!GO:0006807;nitrogen compound metabolic process;0.0111837402250676!GO:0048471;perinuclear region of cytoplasm;0.0113875332869205!GO:0001726;ruffle;0.0113875332869205!GO:0006506;GPI anchor biosynthetic process;0.0115509658904944!GO:0006383;transcription from RNA polymerase III promoter;0.0122602791951445!GO:0033559;unsaturated fatty acid metabolic process;0.0124198167549877!GO:0006636;unsaturated fatty acid biosynthetic process;0.0124198167549877!GO:0051287;NAD binding;0.0126323114583587!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0126339062041546!GO:0007050;cell cycle arrest;0.0129627125803708!GO:0035258;steroid hormone receptor binding;0.0131053867961508!GO:0030131;clathrin adaptor complex;0.0134003224356124!GO:0051087;chaperone binding;0.0136415275175816!GO:0051540;metal cluster binding;0.0139458487592966!GO:0051536;iron-sulfur cluster binding;0.0139458487592966!GO:0044255;cellular lipid metabolic process;0.0139901723158206!GO:0030660;Golgi-associated vesicle membrane;0.0139901723158206!GO:0006612;protein targeting to membrane;0.0140842610909889!GO:0006402;mRNA catabolic process;0.0143155312078503!GO:0016741;transferase activity, transferring one-carbon groups;0.014366470286927!GO:0008168;methyltransferase activity;0.0145643825586398!GO:0006644;phospholipid metabolic process;0.0146115313126363!GO:0031301;integral to organelle membrane;0.0146560330249!GO:0051539;4 iron, 4 sulfur cluster binding;0.0148712310084575!GO:0046426;negative regulation of JAK-STAT cascade;0.0148712310084575!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0148712310084575!GO:0005862;muscle thin filament tropomyosin;0.0153835434557872!GO:0008047;enzyme activator activity;0.0154318285333192!GO:0015631;tubulin binding;0.0158831033101349!GO:0008243;plasminogen activator activity;0.0160755145975327!GO:0008652;amino acid biosynthetic process;0.0160755145975327!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0161133329202435!GO:0050662;coenzyme binding;0.0161133329202435!GO:0009112;nucleobase metabolic process;0.0161576499958249!GO:0000082;G1/S transition of mitotic cell cycle;0.016184195980368!GO:0051168;nuclear export;0.0162172833974414!GO:0019206;nucleoside kinase activity;0.0163470043071286!GO:0001836;release of cytochrome c from mitochondria;0.016610413633544!GO:0008092;cytoskeletal protein binding;0.0170575179658847!GO:0006790;sulfur metabolic process;0.017086513468272!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0170968491538125!GO:0006220;pyrimidine nucleotide metabolic process;0.0171558855573483!GO:0051252;regulation of RNA metabolic process;0.0174669498654304!GO:0006505;GPI anchor metabolic process;0.0175714022874647!GO:0035035;histone acetyltransferase binding;0.0175753372285597!GO:0009308;amine metabolic process;0.0185744287089226!GO:0000075;cell cycle checkpoint;0.018731354720402!GO:0030384;phosphoinositide metabolic process;0.01904400832116!GO:0000049;tRNA binding;0.0191649834498932!GO:0006066;alcohol metabolic process;0.01924137890235!GO:0040029;regulation of gene expression, epigenetic;0.0199702071037359!GO:0031272;regulation of pseudopodium formation;0.0206452568881707!GO:0031269;pseudopodium formation;0.0206452568881707!GO:0031344;regulation of cell projection organization and biogenesis;0.0206452568881707!GO:0031268;pseudopodium organization and biogenesis;0.0206452568881707!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0206452568881707!GO:0031274;positive regulation of pseudopodium formation;0.0206452568881707!GO:0045936;negative regulation of phosphate metabolic process;0.0211750919514145!GO:0030663;COPI coated vesicle membrane;0.0215814981940369!GO:0030126;COPI vesicle coat;0.0215814981940369!GO:0030508;thiol-disulfide exchange intermediate activity;0.0216394791941909!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0217318343740293!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0219572095205634!GO:0045926;negative regulation of growth;0.022884299312018!GO:0006458;'de novo' protein folding;0.02291855295134!GO:0051084;'de novo' posttranslational protein folding;0.02291855295134!GO:0030027;lamellipodium;0.0229549684185467!GO:0009303;rRNA transcription;0.0232632131205118!GO:0030659;cytoplasmic vesicle membrane;0.0239655803629248!GO:0030145;manganese ion binding;0.0240281798716857!GO:0030137;COPI-coated vesicle;0.024060323593017!GO:0004860;protein kinase inhibitor activity;0.024060323593017!GO:0006401;RNA catabolic process;0.0241095860656537!GO:0005657;replication fork;0.0242197633841452!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0242197633841452!GO:0010257;NADH dehydrogenase complex assembly;0.0242197633841452!GO:0033108;mitochondrial respiratory chain complex assembly;0.0242197633841452!GO:0032508;DNA duplex unwinding;0.0249060678418212!GO:0032392;DNA geometric change;0.0249060678418212!GO:0005874;microtubule;0.0255009466753781!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0255242625826127!GO:0000030;mannosyltransferase activity;0.025704910504503!GO:0005869;dynactin complex;0.0260654269670234!GO:0006917;induction of apoptosis;0.0262414173004558!GO:0006261;DNA-dependent DNA replication;0.026345318624496!GO:0065007;biological regulation;0.0263949059316643!GO:0016363;nuclear matrix;0.0265761637647202!GO:0043492;ATPase activity, coupled to movement of substances;0.0266001886300956!GO:0051098;regulation of binding;0.0270926979303308!GO:0031124;mRNA 3'-end processing;0.0271071303721098!GO:0000096;sulfur amino acid metabolic process;0.0271071303721098!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0273032189081096!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0276383630676128!GO:0008538;proteasome activator activity;0.0279062400308539!GO:0043086;negative regulation of catalytic activity;0.0279092905711361!GO:0008139;nuclear localization sequence binding;0.028113966069618!GO:0007051;spindle organization and biogenesis;0.0283540609533912!GO:0031529;ruffle organization and biogenesis;0.0286237816219971!GO:0006739;NADP metabolic process;0.0291117502315718!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0298376118968922!GO:0046519;sphingoid metabolic process;0.0304310950689227!GO:0007021;tubulin folding;0.0304310950689227!GO:0030041;actin filament polymerization;0.031157028018101!GO:0051101;regulation of DNA binding;0.0313729485733375!GO:0005758;mitochondrial intermembrane space;0.0313729485733375!GO:0051028;mRNA transport;0.0314881780785444!GO:0004674;protein serine/threonine kinase activity;0.0317443211896684!GO:0000209;protein polyubiquitination;0.0318369789303889!GO:0030134;ER to Golgi transport vesicle;0.0318369789303889!GO:0003724;RNA helicase activity;0.0319480910252513!GO:0009116;nucleoside metabolic process;0.0319641968138746!GO:0006268;DNA unwinding during replication;0.0325046418697435!GO:0000084;S phase of mitotic cell cycle;0.0326324992817521!GO:0012502;induction of programmed cell death;0.0333142160070564!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0336156281194932!GO:0045039;protein import into mitochondrial inner membrane;0.0336156281194932!GO:0003746;translation elongation factor activity;0.0340984661732895!GO:0048037;cofactor binding;0.0344051765757009!GO:0007346;regulation of progression through mitotic cell cycle;0.0344244102107936!GO:0016301;kinase activity;0.0355240778284051!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0356915008038772!GO:0044433;cytoplasmic vesicle part;0.0368874357272519!GO:0003729;mRNA binding;0.0373167593370233!GO:0006891;intra-Golgi vesicle-mediated transport;0.0377289938311761!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0377289938311761!GO:0004364;glutathione transferase activity;0.0377289938311761!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0377289938311761!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0377289938311761!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0377289938311761!GO:0030433;ER-associated protein catabolic process;0.038215513110294!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.038215513110294!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0384435289587932!GO:0003678;DNA helicase activity;0.0395591433567757!GO:0051775;response to redox state;0.0398999651394674!GO:0006980;redox signal response;0.0398999651394674!GO:0008629;induction of apoptosis by intracellular signals;0.0399183044345966!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0399183044345966!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0399183044345966!GO:0003756;protein disulfide isomerase activity;0.0402802128288919!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0402802128288919!GO:0043281;regulation of caspase activity;0.0409488933926279!GO:0043414;biopolymer methylation;0.041039258479086!GO:0008203;cholesterol metabolic process;0.0411737064927844!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0420032610303829!GO:0051128;regulation of cellular component organization and biogenesis;0.0424183211257054!GO:0051085;chaperone cofactor-dependent protein folding;0.0425354478503613!GO:0006519;amino acid and derivative metabolic process;0.0427364292261622!GO:0030503;regulation of cell redox homeostasis;0.0428504440070396!GO:0007034;vacuolar transport;0.0429928829743508!GO:0009119;ribonucleoside metabolic process;0.0441028583013486!GO:0005096;GTPase activator activity;0.0453845323873349!GO:0015036;disulfide oxidoreductase activity;0.0456787195308814!GO:0031970;organelle envelope lumen;0.0468437825187208!GO:0004680;casein kinase activity;0.0470020445464885!GO:0003711;transcription elongation regulator activity;0.0478557217068064!GO:0005996;monosaccharide metabolic process;0.0478557217068064!GO:0030521;androgen receptor signaling pathway;0.0483643998033812!GO:0042326;negative regulation of phosphorylation;0.048645215892269!GO:0030127;COPII vesicle coat;0.0490455141749467!GO:0012507;ER to Golgi transport vesicle membrane;0.0490455141749467!GO:0050811;GABA receptor binding;0.0493589873449266!GO:0019318;hexose metabolic process;0.0493589873449266!GO:0030128;clathrin coat of endocytic vesicle;0.0494211806722867!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0494211806722867!GO:0030122;AP-2 adaptor complex;0.0494211806722867!GO:0000118;histone deacetylase complex;0.0494211806722867 | |||
|sample_id=11512 | |sample_id=11512 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171 | |top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11512-119G9;search_select_hide=table117:FF:11512-119G9 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Bronchial, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11328 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11328
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11328
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.67 |
| 10 | 10 | 0.791 |
| 100 | 100 | 0.644 |
| 101 | 101 | 0.753 |
| 102 | 102 | 0.895 |
| 103 | 103 | 0.404 |
| 104 | 104 | 0.292 |
| 105 | 105 | 0.124 |
| 106 | 106 | 0.0407 |
| 107 | 107 | 0.0261 |
| 108 | 108 | 0.359 |
| 109 | 109 | 0.068 |
| 11 | 11 | 0.046 |
| 110 | 110 | 0.111 |
| 111 | 111 | 0.764 |
| 112 | 112 | 0.672 |
| 113 | 113 | 0.466 |
| 114 | 114 | 0.626 |
| 115 | 115 | 0.4 |
| 116 | 116 | 0.0815 |
| 117 | 117 | 0.9 |
| 118 | 118 | 0.684 |
| 119 | 119 | 0.473 |
| 12 | 12 | 0.343 |
| 120 | 120 | 0.336 |
| 121 | 121 | 0.441 |
| 122 | 122 | 0.616 |
| 123 | 123 | 0.0593 |
| 124 | 124 | 0.222 |
| 125 | 125 | 0.366 |
| 126 | 126 | 0.497 |
| 127 | 127 | 0.384 |
| 128 | 128 | 0.0389 |
| 129 | 129 | 0.242 |
| 13 | 13 | 0.398 |
| 130 | 130 | 0.149 |
| 131 | 131 | 0.789 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.864 |
| 134 | 134 | 0.212 |
| 135 | 135 | 0.173 |
| 136 | 136 | 0.509 |
| 137 | 137 | 0.146 |
| 138 | 138 | 0.344 |
| 139 | 139 | 0.409 |
| 14 | 14 | 0.953 |
| 140 | 140 | 0.512 |
| 141 | 141 | 0.408 |
| 142 | 142 | 0.781 |
| 143 | 143 | 0.0421 |
| 144 | 144 | 0.98 |
| 145 | 145 | 0.151 |
| 146 | 146 | 0.239 |
| 147 | 147 | 0.386 |
| 148 | 148 | 0.932 |
| 149 | 149 | 0.036 |
| 15 | 15 | 0.901 |
| 150 | 150 | 0.257 |
| 151 | 151 | 0.478 |
| 152 | 152 | 0.176 |
| 153 | 153 | 0.402 |
| 154 | 154 | 0.343 |
| 155 | 155 | 0.4 |
| 156 | 156 | 0.631 |
| 157 | 157 | 0.0742 |
| 158 | 158 | 0.151 |
| 159 | 159 | 0.713 |
| 16 | 16 | 0.103 |
| 160 | 160 | 0.0154 |
| 161 | 161 | 0.592 |
| 162 | 162 | 0.202 |
| 163 | 163 | 0.706 |
| 164 | 164 | 0.778 |
| 165 | 165 | 0.237 |
| 166 | 166 | 0.836 |
| 167 | 167 | 0.268 |
| 168 | 168 | 0.839 |
| 169 | 169 | 0.0644 |
| 17 | 17 | 0.135 |
| 18 | 18 | 0.103 |
| 19 | 19 | 0.0537 |
| 2 | 2 | 0.23 |
| 20 | 20 | 0.477 |
| 21 | 21 | 0.464 |
| 22 | 22 | 0.0774 |
| 23 | 23 | 0.157 |
| 24 | 24 | 0.264 |
| 25 | 25 | 0.865 |
| 26 | 26 | 0.0244 |
| 27 | 27 | 0.228 |
| 28 | 28 | 0.303 |
| 29 | 29 | 0.973 |
| 3 | 3 | 0.441 |
| 30 | 30 | 0.166 |
| 31 | 31 | 0.261 |
| 32 | 32 | 1.18824e-5 |
| 33 | 33 | 0.359 |
| 34 | 34 | 0.139 |
| 35 | 35 | 0.968 |
| 36 | 36 | 0.881 |
| 37 | 37 | 0.27 |
| 38 | 38 | 0.386 |
| 39 | 39 | 0.222 |
| 4 | 4 | 0.314 |
| 40 | 40 | 0.0273 |
| 41 | 41 | 0.513 |
| 42 | 42 | 0.639 |
| 43 | 43 | 0.194 |
| 44 | 44 | 0.739 |
| 45 | 45 | 0.321 |
| 46 | 46 | 0.0896 |
| 47 | 47 | 0.32 |
| 48 | 48 | 0.24 |
| 49 | 49 | 0.178 |
| 5 | 5 | 0.924 |
| 50 | 50 | 0.394 |
| 51 | 51 | 0.284 |
| 52 | 52 | 0.365 |
| 53 | 53 | 0.822 |
| 54 | 54 | 0.251 |
| 55 | 55 | 0.533 |
| 56 | 56 | 0.231 |
| 57 | 57 | 0.231 |
| 58 | 58 | 0.799 |
| 59 | 59 | 0.0286 |
| 6 | 6 | 0.644 |
| 60 | 60 | 0.272 |
| 61 | 61 | 0.644 |
| 62 | 62 | 0.944 |
| 63 | 63 | 0.188 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.033 |
| 66 | 66 | 0.307 |
| 67 | 67 | 0.758 |
| 68 | 68 | 0.109 |
| 69 | 69 | 0.0352 |
| 7 | 7 | 0.748 |
| 70 | 70 | 0.099 |
| 71 | 71 | 0.127 |
| 72 | 72 | 0.858 |
| 73 | 73 | 0.103 |
| 74 | 74 | 0.92 |
| 75 | 75 | 0.795 |
| 76 | 76 | 0.49 |
| 77 | 77 | 0.0241 |
| 78 | 78 | 0.971 |
| 79 | 79 | 0.438 |
| 8 | 8 | 0.0451 |
| 80 | 80 | 0.643 |
| 81 | 81 | 0.521 |
| 82 | 82 | 0.452 |
| 83 | 83 | 0.89 |
| 84 | 84 | 0.501 |
| 85 | 85 | 0.159 |
| 86 | 86 | 0.875 |
| 87 | 87 | 0.442 |
| 88 | 88 | 0.223 |
| 89 | 89 | 0.202 |
| 9 | 9 | 0.183 |
| 90 | 90 | 0.0306 |
| 91 | 91 | 0.25 |
| 92 | 92 | 0.22 |
| 93 | 93 | 0.957 |
| 94 | 94 | 0.261 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.805 |
| 97 | 97 | 0.391 |
| 98 | 98 | 0.164 |
| 99 | 99 | 0.00262 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11328
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000179 human bronchial smooth muscle cell sample
FF:0000998 adult tissue sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000167 (smooth muscle cell sample)
0000004 (tissue sample)
0000179 (human bronchial smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
